AlfalfaGEDB | MS.gene047958

M. sativa cultivar XinJiangDaYe / MS.gene047958

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047958.t1	XP_013462788.1	98.2	392	7	0	1	392	1	392	7.40E-221	776.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047958.t1	F4JEQ2	62.2	373	123	3	1	363	3	367	7.0e-127	455.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047958.t1	A0A072V667	98.2	392	7	0	1	392	1	392	5.3e-221	776.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047958.t1	MTR_2g022810	98.214	392	7	0	1	392	1	392	0.0	805
MS.gene047958.t1	MTR_3g050780	60.331	363	143	1	1	363	1	362	6.51e-159	454
MS.gene047958.t1	MTR_5g092120	58.074	353	139	2	7	358	6	350	2.60e-148	425
MS.gene047958.t1	MTR_7g100500	54.933	375	145	4	1	366	1	360	2.83e-145	417
MS.gene047958.t1	MTR_2g019990	64.423	312	110	1	52	362	61	372	9.56e-145	421
MS.gene047958.t1	MTR_1g067140	63.851	296	107	0	65	360	60	355	1.15e-142	410
MS.gene047958.t1	MTR_1g117060	61.765	306	115	1	64	367	82	387	9.11e-140	407
MS.gene047958.t1	MTR_2g095880	56.213	338	142	2	33	364	39	376	2.21e-138	401
MS.gene047958.t1	MTR_2g095920	53.611	360	161	2	11	364	130	489	1.38e-136	399
MS.gene047958.t1	MTR_3g115500	54.867	339	150	2	35	373	8	343	3.80e-133	385

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047958.t1	AT3G20530	68.085	329	104	1	36	363	39	367	5.46e-164	465
MS.gene047958.t1	AT1G61860	63.526	329	120	0	29	357	35	363	2.12e-155	443
MS.gene047958.t1	AT5G18610	55.820	378	158	4	3	374	4	378	8.09e-146	424
MS.gene047958.t1	AT5G18610	55.820	378	158	4	3	374	4	378	8.09e-146	424
MS.gene047958.t1	AT5G18610	55.820	378	158	4	3	374	4	378	8.09e-146	424
MS.gene047958.t1	AT5G02800	56.077	362	153	2	1	362	1	356	8.56e-144	414
MS.gene047958.t1	AT5G13160	54.667	375	151	3	1	362	1	369	4.30e-140	407
MS.gene047958.t1	AT1G07870	60.390	308	122	0	65	372	89	396	8.84e-139	402
MS.gene047958.t1	AT1G07870	60.390	308	122	0	65	372	89	396	1.48e-137	404
MS.gene047958.t1	AT2G28590	50.919	381	168	1	1	362	1	381	4.28e-137	398

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Find 81 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAAATATCTGACTT+TGG	0.354792	2.4:+64596988	None:intergenic
AAAGGAAAGTTCCCTGTAAA+GGG	0.450214	2.4:-64596741	MS.gene047958:CDS
AACATATGAAGAAATTGCTG+AGG	0.620288	2.4:-64598103	MS.gene047958:CDS
AACCATTGGATTGGCATACA+AGG	0.501349	2.4:-64597254	MS.gene047958:CDS
AACTATAAATATCTGACTTT+GGG	0.263684	2.4:+64596989	None:intergenic
AAGAACAAAACTTGATTGAT+TGG	0.339483	2.4:-64596903	MS.gene047958:CDS
AAGTCAGATATTTATAGTTT+TGG	0.329933	2.4:-64596985	MS.gene047958:CDS
AAGTCCTCTTGCTGCTCCGT+CGG	0.598070	2.4:+64597221	None:intergenic
AAGTTCATTTGCAGCTGAAA+GGG	0.502666	2.4:-64596535	MS.gene047958:CDS
AATAACCGACAAGTTTCACT+AGG	0.590349	2.4:+64597813	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATATGAAGAAATTGCTG+AGG	-	chr2.4:64596975-64596994	MS.gene047958:CDS	30.0%
ATTGTGTAGAAGATGATCAA+AGG	-	chr2.4:64597285-64597304	MS.gene047958:intron	30.0%
CACAGATATAGGTAATGATA+AGG	-	chr2.4:64597801-64597820	MS.gene047958:CDS	30.0%
CCAAAAACAATAGAACAATG+TGG	+	chr2.4:64596799-64596818	None:intergenic	30.0%
CTTATCATTACCTATATCTG+TGG	+	chr2.4:64597803-64597822	None:intergenic	30.0%
GATTGACATGTTACAATTTC+AGG	-	chr2.4:64597683-64597702	MS.gene047958:intron	30.0%
GTTCAATTGTTAGAAACATG+TGG	+	chr2.4:64597645-64597664	None:intergenic	30.0%
GTTTCGGTGAATTGAAAAAA+AGG	+	chr2.4:64597728-64597747	None:intergenic	30.0%
TAAATCATTGCTATGTCTCT+AGG	+	chr2.4:64597618-64597637	None:intergenic	30.0%
TGCTAATTCGAAAAAAAGAG+AGG	+	chr2.4:64597460-64597479	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	64596530	64598570	64596530	ID=MS.gene047958
chr2.4	mRNA	64596530	64598570	64596530	ID=MS.gene047958.t1;Parent=MS.gene047958
chr2.4	exon	64598444	64598570	64598444	ID=MS.gene047958.t1.exon1;Parent=MS.gene047958.t1
chr2.4	CDS	64598444	64598570	64598444	ID=cds.MS.gene047958.t1;Parent=MS.gene047958.t1
chr2.4	exon	64598017	64598198	64598017	ID=MS.gene047958.t1.exon2;Parent=MS.gene047958.t1
chr2.4	CDS	64598017	64598198	64598017	ID=cds.MS.gene047958.t1;Parent=MS.gene047958.t1
chr2.4	exon	64597741	64597930	64597741	ID=MS.gene047958.t1.exon3;Parent=MS.gene047958.t1
chr2.4	CDS	64597741	64597930	64597741	ID=cds.MS.gene047958.t1;Parent=MS.gene047958.t1
chr2.4	exon	64596903	64597294	64596903	ID=MS.gene047958.t1.exon4;Parent=MS.gene047958.t1
chr2.4	CDS	64596903	64597294	64596903	ID=cds.MS.gene047958.t1;Parent=MS.gene047958.t1
chr2.4	exon	64596530	64596820	64596530	ID=MS.gene047958.t1.exon5;Parent=MS.gene047958.t1
chr2.4	CDS	64596530	64596820	64596530	ID=cds.MS.gene047958.t1;Parent=MS.gene047958.t1

Gene Sequence

>MS.gene047958

ATGAGTTGCATTCCATGTTGCTGCAAATCCGATGTTAAATCAACCTCTTACAACCAAGTTTCCAACAAAGTTTCCAAAGGAAGAAGAACATTTAAATCATTAGCAGATGCTATGTCACGAAAAACAGGTATGTGGTATATGATTCATTCTAGATAGATACACAAATTAATATATATTATTTTCTAATTCAATCCAACAATATTTGTTAAATTGCATGTTCATACAAAAAATAAAAATTTTGTTGTATGATAATTCCTTCCTCAAAACCACATTGTTCTATTGTTTTTGGTTCATTTCTTAATATGGTATATAATTATATTTCCAAATGGAAATGTGGATTAATAATTTGTTTGATCTTAAATTAAATTGCAGGTAGCAGCAGACATAGACAAATTACAGCAGAAATACTAAAATATGGAGCTGCAAAAAATGATGTTAAAGTATTAACATATGAAGAAATTGCTGAGGCAACAAACAACTTCGGTTCTGATTGTCTTGTGGGAGAAGGTGGATTTGGGAATGTGTATAAAGGATACATGAAAAGCATTGAACAAGTTTGTTTCTCTCTCTTTCTTGTTGTACAAGTTTGTTTCTTGTTTTACAAGTTATTTGAGTCTCATATTAAATACTCAATGTTCAGAATGTAGCTGTGAAGACTCTGAACAGGGATGGGAATCAGGGAACAAGAGAATTTTTCGCAGAAGTTTTAATGTTGAGTATGGTGAATCATCCAAACCTAGTGAAACTTGTCGGTTATTGTGTAGAAGATGATCAAAGGATTTTAGTTTATGAGTACATGACCAATGGAAGCTTGGAAGATCACCTTCTTGGTAGGTAGTAGTATCTAAAAACATTATATTTCTTAGACTTCTTTTTTTGGTGAATAGGAAATTTCATCCTTAAAATTGTAATCATCGATCAAAGTAGCCTCTCTTTTTTTCGAATTAGCAATTGCATCCTTGACGTCAATCAAAAGGTCTCTTTGTTAAGTTATGCGAGTATGACTCACATGACATGTTAAATGAAGATGTGACATTCCACGTGGGCTCCATATCATTTGTGGAGTGGAGACGCAGCACATTCGTCCTAGAGACATAGCAATGATTTAGAGTCCACATGTTTCTAACAATTGAACTTAATGAAGAGATTATTTGATTGACATGTTACAATTTCAGGGATGAAATTGCCTATTCTCCCTTTTTTTCAATTCACCGAAACAAAACTATAGACAACACTAAAACTGAAACGAGTGTGTTTGTTTGTTTGTTTACCACAGATATAGGTAATGATAAGGAACCATTGGATTGGCATACAAGGATGAAAATTGCCGACGGAGCAGCAAGAGGACTTGAATATCTGCATAACTATGCAGATCCACCAGTGATTTTTCGTGATTTAAAATCGTCTAATATACTATTAGATGAAAATTTCAATCCAAAGCTTTCTGATTTTGGTCTTGCCAAGATTGCCCCAAGAGAGGGTGAGTTTGTAGCCAAAACCAGAGTTATGGGGACTTATGGCTACTGTGCACCAGAATACGTTGCTACTGGTCAATGTACCCCAAAGTCAGATATTTATAGTTTTGGTGTTGTGTTTTTGGAAATAATCAGTGGTAGGAGAGTAATTGACACTGCAAGAGATGCAGAAGAACAAAACTTGATTGATTGGGTATGTCGCGTTAAATATGAGATTCAACGATGAAAATTTCATTAAATATGGTGATACTAACATTATTTTTATGAATTGGCAGGCACAACCTTTGTTTGAGGATAGAGCAAAGTTCACTCTAATGGCTGATCCTTTGCTTAAAGGAAAGTTCCCTGTAAAGGGACTATTTCAAGCCCTTGCAGTGGCAGCAATGTGTCTACAAGAAGAAGCTGACACGCGCCCGTACATGGATGATGTCGTAGCGGCTCTTGCACATTTAGCAGTACACAAAACTGATGAAAAAGACATAGCTGGTGAATCTATAAAAACTGCTGGTCATGTTGAATCTTTTAGAGCTCCAAGTGGAAGTTCATTTGCAGCTGAAAGGGTATAA

Protein sequence

>MS.gene047958.t1

MSCIPCCCKSDVKSTSYNQVSNKVSKGRRTFKSLADAMSRKTGSSRHRQITAEILKYGAAKNDVKVLTYEEIAEATNNFGSDCLVGEGGFGNVYKGYMKSIEQNVAVKTLNRDGNQGTREFFAEVLMLSMVNHPNLVKLVGYCVEDDQRILVYEYMTNGSLEDHLLDIGNDKEPLDWHTRMKIADGAARGLEYLHNYADPPVIFRDLKSSNILLDENFNPKLSDFGLAKIAPREGEFVAKTRVMGTYGYCAPEYVATGQCTPKSDIYSFGVVFLEIISGRRVIDTARDAEEQNLIDWAQPLFEDRAKFTLMADPLLKGKFPVKGLFQALAVAAMCLQEEADTRPYMDDVVAALAHLAVHKTDEKDIAGESIKTAGHVESFRAPSGSSFAAERV