Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048046.t1 | KEH35336.1 | 67.9 | 190 | 17 | 1 | 1 | 146 | 1 | 190 | 2.50E-58 | 235.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048046.t1 | Q8LAV5 | 27.5 | 102 | 72 | 1 | 12 | 113 | 1 | 100 | 2.5e-06 | 54.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048046.t1 | A0A072V0X2 | 67.9 | 190 | 17 | 1 | 1 | 146 | 1 | 190 | 1.8e-58 | 235.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048046.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048046.t1 | MTR_3g088515 | 67.895 | 190 | 17 | 1 | 1 | 146 | 1 | 190 | 1.59e-77 | 236 |
| MS.gene048046.t1 | MTR_1g046340 | 80.180 | 111 | 22 | 0 | 12 | 122 | 1 | 111 | 5.00e-58 | 188 |
| MS.gene048046.t1 | MTR_1g046320 | 71.560 | 109 | 31 | 0 | 12 | 120 | 1 | 109 | 4.97e-47 | 160 |
| MS.gene048046.t1 | MTR_1g046200 | 71.963 | 107 | 30 | 0 | 16 | 122 | 2 | 108 | 6.58e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGTTGGTCATAATT+TGG | 0.253758 | 3.3:+74042243 | None:intergenic |
| ACTTTCCCGGCGGTGGAAAC+GGG | 0.333345 | 3.3:-74039053 | MS.gene048046:CDS |
| AACTTTCCCGGCGGTGGAAA+CGG | 0.347641 | 3.3:-74039054 | MS.gene048046:CDS |
| TTACCTTTGGAATGGATAGA+TGG | 0.348383 | 3.3:+74042789 | None:intergenic |
| CAGAGAAGAAAATTCATTAG+AGG | 0.353395 | 3.3:-74041834 | MS.gene048046:CDS |
| TGCCATATTGCGTGTCCGCC+TGG | 0.359320 | 3.3:+74039213 | None:intergenic |
| ATGAGCTTCACAAAAGCAAT+TGG | 0.382357 | 3.3:+74041977 | None:intergenic |
| CGCGTCAAAGCACATTCAAT+TGG | 0.401347 | 3.3:-74041893 | MS.gene048046:CDS |
| AGCTCAAACGGAGGCGGTGG+TGG | 0.412381 | 3.3:-74039177 | MS.gene048046:CDS |
| ACTTTCCTAGTGGTGGTAAA+GGG | 0.412711 | 3.3:-74039143 | MS.gene048046:CDS |
| GGCCAGGCGGACACGCAATA+TGG | 0.417457 | 3.3:-74039215 | MS.gene048046:CDS |
| GTCATAAACTTTCCCGGCGG+TGG | 0.417743 | 3.3:-74039060 | MS.gene048046:CDS |
| AACTTTCCTAGTGGTGGTAA+AGG | 0.439112 | 3.3:-74039144 | MS.gene048046:CDS |
| GTGTTGATGGCTATATAGTT+TGG | 0.439892 | 3.3:-74039236 | MS.gene048046:CDS |
| GTATGTGTTGTGTTGATTTG+TGG | 0.448016 | 3.3:+74040736 | None:intergenic |
| GCAAATGTCATAAACTTTCC+CGG | 0.460290 | 3.3:-74039066 | MS.gene048046:CDS |
| GCCTCCGTTTGAGCTTCCAC+TGG | 0.480548 | 3.3:+74039185 | None:intergenic |
| AGCACCAGTGGAAGCTCAAA+CGG | 0.486563 | 3.3:-74039189 | MS.gene048046:CDS |
| ATGAAAGCAGAAAAGAAGAA+AGG | 0.488071 | 3.3:-74041521 | MS.gene048046:intron |
| CTCTTCCTCTATGATCCCTT+AGG | 0.492258 | 3.3:+74041921 | None:intergenic |
| TTGTGGCAATATGTGATGAT+AGG | 0.496982 | 3.3:+74040753 | None:intergenic |
| TCTCATAATGCTTCTCTATG+AGG | 0.504327 | 3.3:+74042192 | None:intergenic |
| GGGATCATAGAGGAAGAGAT+TGG | 0.510517 | 3.3:-74041916 | MS.gene048046:CDS |
| CTTTCCCGGCGGTGGAAACG+GGG | 0.511813 | 3.3:-74039052 | MS.gene048046:CDS |
| GGAAGCTCAAACGGAGGCGG+TGG | 0.512147 | 3.3:-74039180 | MS.gene048046:CDS |
| ATCATAAACTTTCCTAGTGG+TGG | 0.514983 | 3.3:-74039150 | MS.gene048046:CDS |
| AAGCACATTCAATTGGTGGC+AGG | 0.516729 | 3.3:-74041886 | MS.gene048046:CDS |
| AAGAAGAAAGGAGTTGACAA+GGG | 0.522584 | 3.3:-74041509 | MS.gene048046:CDS |
| AGAGAAGCATTATGAGAGAA+TGG | 0.527328 | 3.3:-74042186 | MS.gene048046:intron |
| GATGGCTATATAGTTTGGCC+AGG | 0.530422 | 3.3:-74039231 | MS.gene048046:CDS |
| AAAGAAGAAAGGAGTTGACA+AGG | 0.542225 | 3.3:-74041510 | MS.gene048046:CDS |
| GAGGGACATAAGTCAAGCGT+TGG | 0.544112 | 3.3:-74039009 | MS.gene048046:CDS |
| TGAGCTTCACAAAAGCAATT+GGG | 0.545679 | 3.3:+74041978 | None:intergenic |
| GTCAAAGCACATTCAATTGG+TGG | 0.546694 | 3.3:-74041890 | MS.gene048046:CDS |
| ACCAGTGGAAGCTCAAACGG+AGG | 0.551732 | 3.3:-74039186 | MS.gene048046:CDS |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 3.3:+74041801 | None:intergenic |
| GAGGAACACCTTGGCAGTGT+TGG | 0.557953 | 3.3:+74042232 | None:intergenic |
| ATTTGTAGTTGGTGAGACAC+AGG | 0.559962 | 3.3:-74039277 | MS.gene048046:intron |
| AGCTCATGCTTTCGAAACAA+AGG | 0.561664 | 3.3:-74041961 | MS.gene048046:CDS |
| GGAAGACTTTGAAGAAGTTG+AGG | 0.564880 | 3.3:+74042213 | None:intergenic |
| GCTCATGCTTTCGAAACAAA+GGG | 0.566004 | 3.3:-74041960 | MS.gene048046:CDS |
| AGTGGAAGCTCAAACGGAGG+CGG | 0.581193 | 3.3:-74039183 | MS.gene048046:CDS |
| CTTTCCTAGTGGTGGTAAAG+GGG | 0.585504 | 3.3:-74039142 | MS.gene048046:CDS |
| TTTCCTAGTGGTGGTAAAGG+GGG | 0.588254 | 3.3:-74039141 | MS.gene048046:CDS |
| GGCTATATAGTTTGGCCAGG+CGG | 0.594243 | 3.3:-74039228 | MS.gene048046:CDS |
| GAAGAAGTTGAGGAACACCT+TGG | 0.598409 | 3.3:+74042223 | None:intergenic |
| TTTCCCGGCGGTGGAAACGG+GGG | 0.606258 | 3.3:-74039051 | MS.gene048046:CDS |
| TTTATCCTAAGGGATCATAG+AGG | 0.616153 | 3.3:-74041926 | MS.gene048046:CDS |
| ATGCCATCTATCCATTCCAA+AGG | 0.619737 | 3.3:-74042792 | MS.gene048046:intron |
| AATTATGACCAACACTGCCA+AGG | 0.625272 | 3.3:-74042240 | MS.gene048046:CDS |
| GCAATATGGCAAAGCACCAG+TGG | 0.640117 | 3.3:-74039201 | MS.gene048046:CDS |
| CCCGGAAGTGGAAAACGGGG+TGG | 0.655848 | 3.3:-74039093 | MS.gene048046:CDS |
| ACAACACATACCGAAAAGAG+AGG | 0.656927 | 3.3:-74040724 | MS.gene048046:CDS |
| ATTATCATAAACTTTCCTAG+TGG | 0.664481 | 3.3:-74039153 | MS.gene048046:CDS |
| TTTCCCGGAAGTGGAAAACG+GGG | 0.695053 | 3.3:-74039096 | MS.gene048046:CDS |
| AATGTCATAAACTTTCCCGG+CGG | 0.795660 | 3.3:-74039063 | MS.gene048046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTATTTTTATTTTAT+TGG | - | chr3.3:74042148-74042167 | MS.gene048046:intron | 0.0% |
| !!! | ATCAGTTTTTTTTTTTTTTT+TGG | + | chr3.3:74039722-74039741 | None:intergenic | 10.0% |
| !!! | TTGTAAAATATTTTTATGAA+GGG | - | chr3.3:74041284-74041303 | MS.gene048046:intron | 10.0% |
| !!! | TTTGTAAAATATTTTTATGA+AGG | - | chr3.3:74041283-74041302 | MS.gene048046:intron | 10.0% |
| !!! | TTTTTAATATTTGTTTTCTA+TGG | - | chr3.3:74039403-74039422 | MS.gene048046:intron | 10.0% |
| !! | AATACATAATAATTTCTTCT+TGG | - | chr3.3:74041886-74041905 | MS.gene048046:CDS | 15.0% |
| !! | AATTTCTTTAGCAATTTATT+TGG | - | chr3.3:74039430-74039449 | MS.gene048046:intron | 15.0% |
| !! | TAACAATTAACTATTAACAT+TGG | + | chr3.3:74039256-74039275 | None:intergenic | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | + | chr3.3:74040909-74040928 | None:intergenic | 15.0% |
| !!! | AGGAAAATATTTGAATTTTT+AGG | - | chr3.3:74039475-74039494 | MS.gene048046:intron | 15.0% |
| !!! | AGTTTTTATTTATTTGTAGT+TGG | - | chr3.3:74042491-74042510 | MS.gene048046:intron | 15.0% |
| !!! | TATATATTGTTTTCAATTGT+TGG | + | chr3.3:74042363-74042382 | None:intergenic | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | - | chr3.3:74040810-74040829 | MS.gene048046:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | - | chr3.3:74040909-74040928 | MS.gene048046:intron | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | - | chr3.3:74040908-74040927 | MS.gene048046:intron | 15.0% |
| !! | AAAAGAAAAAAGGTTTAAGT+TGG | + | chr3.3:74039190-74039209 | None:intergenic | 20.0% |
| !! | AAACAAGTTTCAAAGTTAAT+AGG | + | chr3.3:74041262-74041281 | None:intergenic | 20.0% |
| !! | AACAAGAAGAAAAAGAAAAA+AGG | + | chr3.3:74039200-74039219 | None:intergenic | 20.0% |
| !! | AACTTAATAATAATAATCGG+AGG | + | chr3.3:74039644-74039663 | None:intergenic | 20.0% |
| !! | ACTTTATGTATAAAACAGTT+AGG | + | chr3.3:74041784-74041803 | None:intergenic | 20.0% |
| !! | ATTAAGACAATAAAAACTTG+AGG | + | chr3.3:74039358-74039377 | None:intergenic | 20.0% |
| !! | CTTAATAATATTATCCAATG+AGG | + | chr3.3:74041373-74041392 | None:intergenic | 20.0% |
| !!! | ACTGTTTTATACATAAAGTT+TGG | - | chr3.3:74041785-74041804 | MS.gene048046:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | - | chr3.3:74039843-74039862 | MS.gene048046:intron | 20.0% |
| !!! | GTGTTTTTATAACTTTCTTA+TGG | - | chr3.3:74041306-74041325 | MS.gene048046:intron | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | - | chr3.3:74039842-74039861 | MS.gene048046:intron | 20.0% |
| !!! | TCAAGTTTTTATTGTCTTAA+TGG | - | chr3.3:74039357-74039376 | MS.gene048046:intron | 20.0% |
| ! | AAGTTTCAAAGGTTACAAAT+AGG | - | chr3.3:74041566-74041585 | MS.gene048046:intron | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | + | chr3.3:74040904-74040923 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | - | chr3.3:74040035-74040054 | MS.gene048046:intron | 25.0% |
| ! | ATTATCATAAACTTTCCTAG+TGG | - | chr3.3:74042626-74042645 | MS.gene048046:intron | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | - | chr3.3:74040415-74040434 | MS.gene048046:intron | 25.0% |
| ! | CAAATCAATAGAAATGCTTA+GGG | - | chr3.3:74041194-74041213 | MS.gene048046:intron | 25.0% |
| ! | CAGGAATCAAAGATAAAAAT+TGG | - | chr3.3:74042521-74042540 | MS.gene048046:intron | 25.0% |
| ! | CTGTCTTATAATTTGAATGT+TGG | - | chr3.3:74039498-74039517 | MS.gene048046:intron | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | + | chr3.3:74040755-74040774 | None:intergenic | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | - | chr3.3:74040071-74040090 | MS.gene048046:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | - | chr3.3:74040068-74040087 | MS.gene048046:intron | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | - | chr3.3:74040422-74040441 | MS.gene048046:intron | 25.0% |
| ! | TATGACAAAATATGCAACAA+AGG | + | chr3.3:74039032-74039051 | None:intergenic | 25.0% |
| ! | TTTCAAAACAAACTCTAAGT+AGG | - | chr3.3:74042257-74042276 | MS.gene048046:intron | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | + | chr3.3:74039981-74040000 | None:intergenic | 25.0% |
| !! | AAAGAAGAAAAAAGTGTACA+TGG | + | chr3.3:74042457-74042476 | None:intergenic | 25.0% |
| !! | GTGATTTTTCCATTTTCAAA+AGG | + | chr3.3:74041825-74041844 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | + | chr3.3:74040526-74040545 | None:intergenic | 25.0% |
| !! | TATTGTTTTCAATTGTTGGA+AGG | + | chr3.3:74042359-74042378 | None:intergenic | 25.0% |
| !! | TTTTCCTTGTAATAACTGTT+TGG | - | chr3.3:74041520-74041539 | MS.gene048046:intron | 25.0% |
| !!! | AAGATAAAAATTGGTGTTGA+TGG | - | chr3.3:74042530-74042549 | MS.gene048046:intron | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | + | chr3.3:74040472-74040491 | None:intergenic | 25.0% |
| !!! | TCATTTTCACCTTTTGAAAA+TGG | - | chr3.3:74041813-74041832 | MS.gene048046:CDS | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | - | chr3.3:74040979-74040998 | MS.gene048046:intron | 25.0% |
| !!! | TTGTAACCTTTGAAACTTAA+AGG | + | chr3.3:74041564-74041583 | None:intergenic | 25.0% |
| AAAGAACTAAACCAATTCGT+TGG | + | chr3.3:74040554-74040573 | None:intergenic | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | + | chr3.3:74040553-74040572 | None:intergenic | 30.0% | |
| AAGTTTCAAAGGTTACAGAT+AGG | + | chr3.3:74041707-74041726 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | + | chr3.3:74040973-74040992 | None:intergenic | 30.0% | |
| ACAAAATATGCAACAAAGGA+AGG | + | chr3.3:74039028-74039047 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr3.3:74040879-74040898 | None:intergenic | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | - | chr3.3:74040258-74040277 | MS.gene048046:intron | 30.0% | |
| CAAAAACATACATGCTTTGA+AGG | + | chr3.3:74040331-74040350 | None:intergenic | 30.0% | |
| CAGAGAAGAAAATTCATTAG+AGG | - | chr3.3:74039945-74039964 | MS.gene048046:intron | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | + | chr3.3:74040423-74040442 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | - | chr3.3:74040421-74040440 | MS.gene048046:intron | 30.0% | |
| CTATTACAGAATCATTTCTC+TGG | - | chr3.3:74041399-74041418 | MS.gene048046:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr3.3:74041680-74041699 | MS.gene048046:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr3.3:74041699-74041680 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | - | chr3.3:74041651-74041670 | MS.gene048046:intron | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | - | chr3.3:74041079-74041098 | MS.gene048046:intron | 30.0% | |
| GCAAATCAATAGAAATGCTT+AGG | - | chr3.3:74041193-74041212 | MS.gene048046:intron | 30.0% | |
| GCATAAGATGATAAATGAGT+TGG | + | chr3.3:74042297-74042316 | None:intergenic | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | - | chr3.3:74040041-74040060 | MS.gene048046:intron | 30.0% | |
| GTTACAAACGTGAAACTTAA+AGG | - | chr3.3:74041740-74041759 | MS.gene048046:intron | 30.0% | |
| GTTTCATTCCATATCATGTA+TGG | + | chr3.3:74039064-74039083 | None:intergenic | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | - | chr3.3:74040077-74040096 | MS.gene048046:intron | 30.0% | |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr3.3:74040843-74040862 | None:intergenic | 30.0% | |
| TTGTTGATCAGAATTGAGTT+TGG | - | chr3.3:74041470-74041489 | MS.gene048046:CDS | 30.0% | |
| ! | AAGAAAAAAGTGTACATGGA+TGG | + | chr3.3:74042453-74042472 | None:intergenic | 30.0% |
| ! | ACTTGTTGCTTATGAATATC+AGG | - | chr3.3:74039455-74039474 | MS.gene048046:intron | 30.0% |
| ! | AGATCAATGTTACTTAAGAG+TGG | + | chr3.3:74039749-74039768 | None:intergenic | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | - | chr3.3:74040672-74040691 | MS.gene048046:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | + | chr3.3:74041718-74041737 | None:intergenic | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr3.3:74041584-74041603 | MS.gene048046:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr3.3:74041603-74041584 | None:intergenic | 30.0% |
| ! | GGAAACATCATAATTTTTCC+CGG | - | chr3.3:74042668-74042687 | MS.gene048046:intron | 30.0% |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | - | chr3.3:74040671-74040690 | MS.gene048046:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr3.3:74041595-74041614 | MS.gene048046:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr3.3:74041614-74041595 | None:intergenic | 30.0% |
| !! | ACTGGTTTGAGTAAAATGTT+AGG | + | chr3.3:74039323-74039342 | None:intergenic | 30.0% |
| !! | CTGTAACCTTTGAAACTTAA+AGG | - | chr3.3:74041709-74041728 | MS.gene048046:intron | 30.0% |
| !!! | TCATTTCTCTGGTTTTACAT+TGG | - | chr3.3:74041410-74041429 | MS.gene048046:intron | 30.0% |
| AAAAGTGGTCATCATAGTCA+TGG | + | chr3.3:74041343-74041362 | None:intergenic | 35.0% | |
| AAAGAAGAAAGGAGTTGACA+AGG | - | chr3.3:74040269-74040288 | MS.gene048046:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | - | chr3.3:74040270-74040289 | MS.gene048046:intron | 35.0% | |
| AAGTGACTTTAACCCAATGA+AGG | + | chr3.3:74041499-74041518 | None:intergenic | 35.0% | |
| AATATGCAACAAAGGAAGGA+TGG | + | chr3.3:74039024-74039043 | None:intergenic | 35.0% | |
| ACATGTCATATTATCCACTG+TGG | + | chr3.3:74041852-74041871 | None:intergenic | 35.0% | |
| ACTGCTTCTTAACTCTAGTA+TGG | - | chr3.3:74042325-74042344 | MS.gene048046:intron | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr3.3:74041071-74041090 | MS.gene048046:intron | 35.0% | |
| ATATGCAACAAAGGAAGGAT+GGG | + | chr3.3:74039023-74039042 | None:intergenic | 35.0% | |
| ATCATAAACTTTCCTAGTGG+TGG | - | chr3.3:74042629-74042648 | MS.gene048046:intron | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | + | chr3.3:74039805-74039824 | None:intergenic | 35.0% | |
| CAATGAGGCATAGATAAAAG+TGG | + | chr3.3:74041358-74041377 | None:intergenic | 35.0% | |
| CATCTCTTCCATACATGATA+TGG | - | chr3.3:74039053-74039072 | MS.gene048046:CDS | 35.0% | |
| CTGCTTCTTAACTCTAGTAT+GGG | - | chr3.3:74042326-74042345 | MS.gene048046:intron | 35.0% | |
| CTTGTCAATTGTGGTAAGTA+GGG | + | chr3.3:74042038-74042057 | None:intergenic | 35.0% | |
| GAAAAATCACTAATCCACAG+TGG | - | chr3.3:74041835-74041854 | MS.gene048046:CDS | 35.0% | |
| GACTATCAATAGCACTTGTT+GGG | + | chr3.3:74042087-74042106 | None:intergenic | 35.0% | |
| GCAAATGTCATAAACTTTCC+CGG | - | chr3.3:74042713-74042732 | MS.gene048046:intron | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | + | chr3.3:74040773-74040792 | None:intergenic | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | - | chr3.3:74040496-74040515 | MS.gene048046:intron | 35.0% | |
| GTTTCACGTTTGTAACAGAT+AGG | + | chr3.3:74041736-74041755 | None:intergenic | 35.0% | |
| TACAGAAGTAAAGTAGCCAA+GGG | + | chr3.3:74039114-74039133 | None:intergenic | 35.0% | |
| TAGCTATTTGCAGTGAACTA+GGG | + | chr3.3:74042218-74042237 | None:intergenic | 35.0% | |
| TCTCATAATGCTTCTCTATG+AGG | + | chr3.3:74039590-74039609 | None:intergenic | 35.0% | |
| TGACTATCAATAGCACTTGT+TGG | + | chr3.3:74042088-74042107 | None:intergenic | 35.0% | |
| TGAGCTTCACAAAAGCAATT+GGG | + | chr3.3:74039804-74039823 | None:intergenic | 35.0% | |
| TGAGTTTGGAAACCTTCATT+GGG | - | chr3.3:74041484-74041503 | MS.gene048046:CDS | 35.0% | |
| TTACAGAAGTAAAGTAGCCA+AGG | + | chr3.3:74039115-74039134 | None:intergenic | 35.0% | |
| TTCTTTCCTTCATGTGCTTA+TGG | - | chr3.3:74040764-74040783 | MS.gene048046:CDS | 35.0% | |
| TTGAGGTTAGATAACTCAAC+TGG | + | chr3.3:74039341-74039360 | None:intergenic | 35.0% | |
| TTGAGTTTGGAAACCTTCAT+TGG | - | chr3.3:74041483-74041502 | MS.gene048046:CDS | 35.0% | |
| TTGGCCAAACAGTTATTACA+AGG | + | chr3.3:74041527-74041546 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | + | chr3.3:74041029-74041048 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | - | chr3.3:74039853-74039872 | MS.gene048046:intron | 35.0% | |
| ! | ACAAGTGCTATTGATAGTCA+TGG | - | chr3.3:74042088-74042107 | MS.gene048046:intron | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | + | chr3.3:74040736-74040755 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | + | chr3.3:74041068-74041087 | None:intergenic | 35.0% |
| ! | ATCATAATTTTTCCCGGAAG+TGG | - | chr3.3:74042674-74042693 | MS.gene048046:intron | 35.0% |
| ! | ATGGTTGAGTTTTTGTGCTA+GGG | - | chr3.3:74041098-74041117 | MS.gene048046:intron | 35.0% |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | - | chr3.3:74040677-74040696 | MS.gene048046:intron | 35.0% |
| ! | CACTTTTATCTATGCCTCAT+TGG | - | chr3.3:74041356-74041375 | MS.gene048046:intron | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | + | chr3.3:74040735-74040754 | None:intergenic | 35.0% |
| ! | TTGGCTACTTTACTTCTGTA+AGG | - | chr3.3:74039114-74039133 | MS.gene048046:CDS | 35.0% |
| ! | TTTGAAACTTAAAGGACCCA+GGG | + | chr3.3:74041556-74041575 | None:intergenic | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | - | chr3.3:74040047-74040066 | MS.gene048046:intron | 35.0% |
| !! | AGAGAAGCATTATGAGAGAA+TGG | - | chr3.3:74039593-74039612 | MS.gene048046:intron | 35.0% |
| !! | GAGTTCTTTTACCTTTGGAA+TGG | + | chr3.3:74039001-74039020 | None:intergenic | 35.0% |
| !! | GTATGTGTTGTGTTGATTTG+TGG | + | chr3.3:74041046-74041065 | None:intergenic | 35.0% |
| !! | GTGTTGATGGCTATATAGTT+TGG | - | chr3.3:74042543-74042562 | MS.gene048046:intron | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr3.3:74041647-74041666 | None:intergenic | 35.0% |
| !! | TTACCTTTGGAATGGATAGA+TGG | + | chr3.3:74038993-74039012 | None:intergenic | 35.0% |
| !!! | GGCTTTATTTTGATGATGGT+TGG | - | chr3.3:74039914-74039933 | MS.gene048046:intron | 35.0% |
| AACTTTCCTAGTGGTGGTAA+AGG | - | chr3.3:74042635-74042654 | MS.gene048046:intron | 40.0% | |
| AATGGTAGAGGAAGAAGAAG+AGG | - | chr3.3:74040152-74040171 | MS.gene048046:intron | 40.0% | |
| AATGTCATAAACTTTCCCGG+CGG | - | chr3.3:74042716-74042735 | MS.gene048046:intron | 40.0% | |
| AATTATGACCAACACTGCCA+AGG | - | chr3.3:74039539-74039558 | MS.gene048046:intron | 40.0% | |
| ACAAACTCTAAGTAGGAGCT+AGG | - | chr3.3:74042264-74042283 | MS.gene048046:intron | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | - | chr3.3:74041055-74041074 | MS.gene048046:intron | 40.0% | |
| ACATTACAGACCCAACGAAT+TGG | - | chr3.3:74040540-74040559 | MS.gene048046:intron | 40.0% | |
| ACTTTCCTAGTGGTGGTAAA+GGG | - | chr3.3:74042636-74042655 | MS.gene048046:intron | 40.0% | |
| AGCTCATGCTTTCGAAACAA+AGG | - | chr3.3:74039818-74039837 | MS.gene048046:intron | 40.0% | |
| AGGCGGAGGAAAAATAAATG+AGG | - | chr3.3:74042751-74042770 | MS.gene048046:intron | 40.0% | |
| ATGCCATCTATCCATTCCAA+AGG | - | chr3.3:74038987-74039006 | MS.gene048046:CDS | 40.0% | |
| CTAGCTATTTGCAGTGAACT+AGG | + | chr3.3:74042219-74042238 | None:intergenic | 40.0% | |
| CTTTCTATCAACCTCCGTTA+AGG | + | chr3.3:74041622-74041641 | None:intergenic | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | - | chr3.3:74040174-74040193 | MS.gene048046:intron | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | - | chr3.3:74040168-74040187 | MS.gene048046:intron | 40.0% | |
| GCCATTGAAAGGTCAAATTG+GGG | + | chr3.3:74042065-74042084 | None:intergenic | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | - | chr3.3:74039819-74039838 | MS.gene048046:intron | 40.0% | |
| GCTTGTCAATTGTGGTAAGT+AGG | + | chr3.3:74042039-74042058 | None:intergenic | 40.0% | |
| GGCCATTGAAAGGTCAAATT+GGG | + | chr3.3:74042066-74042085 | None:intergenic | 40.0% | |
| GGCGGAGGAAAAATAAATGA+GGG | - | chr3.3:74042752-74042771 | MS.gene048046:intron | 40.0% | |
| GGTTTCAGATAGGTCCTTAA+CGG | - | chr3.3:74041605-74041624 | MS.gene048046:intron | 40.0% | |
| GTCAAAGCACATTCAATTGG+TGG | - | chr3.3:74039889-74039908 | MS.gene048046:intron | 40.0% | |
| TGGAAGATAGCAATGCACAA+TGG | - | chr3.3:74041430-74041449 | MS.gene048046:intron | 40.0% | |
| ! | CTGGGTCCTTTAAGTTTCAA+AGG | - | chr3.3:74041555-74041574 | MS.gene048046:intron | 40.0% |
| ! | GATGGGAGTTCTTTTACCTT+TGG | + | chr3.3:74039006-74039025 | None:intergenic | 40.0% |
| ! | GATGGTTGAGTTTTTGTGCT+AGG | - | chr3.3:74041097-74041116 | MS.gene048046:intron | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr3.3:74040517-74040536 | None:intergenic | 40.0% |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | + | chr3.3:74039569-74039588 | None:intergenic | 40.0% |
| ! | TGATGATGAAGACGATGATG+AGG | - | chr3.3:74040197-74040216 | MS.gene048046:intron | 40.0% |
| ! | TTGAGTTTTTGTGCTAGGGT+GGG | - | chr3.3:74041102-74041121 | MS.gene048046:intron | 40.0% |
| ! | TTTTTCCCGGAAGTGGAAAA+CGG | - | chr3.3:74042681-74042700 | MS.gene048046:intron | 40.0% |
| !! | ATTTGTAGTTGGTGAGACAC+AGG | - | chr3.3:74042502-74042521 | MS.gene048046:intron | 40.0% |
| !! | CTTAACGGAGGTTGATAGAA+AGG | - | chr3.3:74041620-74041639 | MS.gene048046:intron | 40.0% |
| !! | CTTTGAAACTTAAAGGACCC+AGG | + | chr3.3:74041557-74041576 | None:intergenic | 40.0% |
| !! | TGGCAGTGTTGGTCATAATT+TGG | + | chr3.3:74039539-74039558 | None:intergenic | 40.0% |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | - | chr3.3:74039910-74039929 | MS.gene048046:intron | 40.0% |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr3.3:74041747-74041766 | MS.gene048046:CDS | 45.0% | |
| CGACGGTTATACAATGGTAG+AGG | - | chr3.3:74040140-74040159 | MS.gene048046:intron | 45.0% | |
| CGCGTCAAAGCACATTCAAT+TGG | - | chr3.3:74039886-74039905 | MS.gene048046:intron | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | - | chr3.3:74041748-74041767 | MS.gene048046:CDS | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | + | chr3.3:74039861-74039880 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATACAA+GGG | + | chr3.3:74040866-74040885 | None:intergenic | 45.0% | |
| CTTTCCTAGTGGTGGTAAAG+GGG | - | chr3.3:74042637-74042656 | MS.gene048046:intron | 45.0% | |
| GAAGAAGTTGAGGAACACCT+TGG | + | chr3.3:74039559-74039578 | None:intergenic | 45.0% | |
| GATGGCTATATAGTTTGGCC+AGG | - | chr3.3:74042548-74042567 | MS.gene048046:intron | 45.0% | |
| GCCCCAATTTGACCTTTCAA+TGG | - | chr3.3:74042061-74042080 | MS.gene048046:intron | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | - | chr3.3:74039863-74039882 | MS.gene048046:intron | 45.0% | |
| GGGCCATTGAAAGGTCAAAT+TGG | + | chr3.3:74042067-74042086 | None:intergenic | 45.0% | |
| TATGTTGGAGGATGAGGAAG+AGG | - | chr3.3:74040083-74040102 | MS.gene048046:intron | 45.0% | |
| TGAAGACGATGATGAGGATG+AGG | - | chr3.3:74040203-74040222 | MS.gene048046:intron | 45.0% | |
| TGACGACGACGGTTATACAA+TGG | - | chr3.3:74040134-74040153 | MS.gene048046:intron | 45.0% | |
| TGCTTAGGGTGCACGTTATT+AGG | - | chr3.3:74041208-74041227 | MS.gene048046:intron | 45.0% | |
| TTCAGATAGGTCCTTAACGG+AGG | - | chr3.3:74041608-74041627 | MS.gene048046:intron | 45.0% | |
| TTGTGCGAAGTTGTGTTGCA+TGG | - | chr3.3:74041168-74041187 | MS.gene048046:intron | 45.0% | |
| TTTCCTAGTGGTGGTAAAGG+GGG | - | chr3.3:74042638-74042657 | MS.gene048046:intron | 45.0% | |
| ! | AAGCACATTCAATTGGTGGC+AGG | - | chr3.3:74039893-74039912 | MS.gene048046:intron | 45.0% |
| ! | GAAGAGGAAGGTGATGATGA+TGG | - | chr3.3:74040099-74040118 | MS.gene048046:intron | 45.0% |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | - | chr3.3:74040430-74040449 | MS.gene048046:intron | 45.0% |
| ! | GTTGAGTTTTTGTGCTAGGG+TGG | - | chr3.3:74041101-74041120 | MS.gene048046:intron | 45.0% |
| ! | TTTTCCCGGAAGTGGAAAAC+GGG | - | chr3.3:74042682-74042701 | MS.gene048046:intron | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | - | chr3.3:74040050-74040069 | MS.gene048046:intron | 45.0% |
| !! | AAAAACTTAATAATAATAAT+CGG | + | chr3.3:74039647-74039666 | None:intergenic | 5.0% |
| !!! | TAAATAATTTTTTTTTTTTG+AGG | - | chr3.3:74041959-74041978 | MS.gene048046:CDS | 5.0% |
| AGCACCAGTGGAAGCTCAAA+CGG | - | chr3.3:74042590-74042609 | MS.gene048046:intron | 50.0% | |
| AGTTAGGCCAAATACCTCCC+TGG | + | chr3.3:74041768-74041787 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr3.3:74040867-74040886 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr3.3:74040864-74040883 | MS.gene048046:intron | 50.0% | |
| CGATGATGAGGATGAGGATG+AGG | - | chr3.3:74040209-74040228 | MS.gene048046:intron | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | - | chr3.3:74041751-74041770 | MS.gene048046:CDS | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr3.3:74041770-74041751 | None:intergenic | 50.0% | |
| GAAGTAAAGTAGCCAAGGGC+AGG | + | chr3.3:74039110-74039129 | None:intergenic | 50.0% | |
| GAGGGACATAAGTCAAGCGT+TGG | - | chr3.3:74042770-74042789 | MS.gene048046:intron | 50.0% | |
| GGCTATATAGTTTGGCCAGG+CGG | - | chr3.3:74042551-74042570 | MS.gene048046:intron | 50.0% | |
| GTTAGGCCAAATACCTCCCT+GGG | + | chr3.3:74041767-74041786 | None:intergenic | 50.0% | |
| GTTTGGCCAAATACCTCCCT+GGG | - | chr3.3:74041537-74041556 | MS.gene048046:intron | 50.0% | |
| TGCGAAGTTGTGTTGCATGG+AGG | - | chr3.3:74041171-74041190 | MS.gene048046:intron | 50.0% | |
| TGGGGCATGCTTGTCAATTG+TGG | + | chr3.3:74042047-74042066 | None:intergenic | 50.0% | |
| TGTTTGGCCAAATACCTCCC+TGG | - | chr3.3:74041536-74041555 | MS.gene048046:intron | 50.0% | |
| TTGGAGGATGAGGAAGAGGA+AGG | - | chr3.3:74040087-74040106 | MS.gene048046:intron | 50.0% | |
| TTTCCCGGAAGTGGAAAACG+GGG | - | chr3.3:74042683-74042702 | MS.gene048046:intron | 50.0% | |
| ! | ACCTCTTCTTTTCCTGCCCT+TGG | - | chr3.3:74039095-74039114 | MS.gene048046:CDS | 50.0% |
| ! | GCAATATGGCAAAGCACCAG+TGG | - | chr3.3:74042578-74042597 | MS.gene048046:intron | 50.0% |
| ! | GCACTTGTTGGGCCATTGAA+AGG | + | chr3.3:74042076-74042095 | None:intergenic | 50.0% |
| ! | GGAGATGATGATGACGACGA+CGG | - | chr3.3:74040123-74040142 | MS.gene048046:intron | 50.0% |
| !! | AAAGGACCCAGGGAGGTATT+TGG | - | chr3.3:74041758-74041777 | MS.gene048046:CDS | 50.0% |
| !! | AAAGGACCCAGGGAGGTATT+TGG | + | chr3.3:74041777-74041758 | None:intergenic | 50.0% |
| !! | GAGGAAGGTGATGATGATGG+TGG | - | chr3.3:74040102-74040121 | MS.gene048046:intron | 50.0% |
| AACTTTCCCGGCGGTGGAAA+CGG | - | chr3.3:74042725-74042744 | MS.gene048046:intron | 55.0% | |
| ACCAGTGGAAGCTCAAACGG+AGG | - | chr3.3:74042593-74042612 | MS.gene048046:intron | 55.0% | |
| AGTGGAAGCTCAAACGGAGG+CGG | - | chr3.3:74042596-74042615 | MS.gene048046:intron | 55.0% | |
| GAGGAACACCTTGGCAGTGT+TGG | + | chr3.3:74039550-74039569 | None:intergenic | 55.0% | |
| GCCAAGGGCAGGAAAAGAAG+AGG | + | chr3.3:74039099-74039118 | None:intergenic | 55.0% | |
| GTCATAAACTTTCCCGGCGG+TGG | - | chr3.3:74042719-74042738 | MS.gene048046:intron | 55.0% | |
| ! | ACCACCCCGTTTTCCACTTC+CGG | + | chr3.3:74042690-74042709 | None:intergenic | 55.0% |
| ACTTTCCCGGCGGTGGAAAC+GGG | - | chr3.3:74042726-74042745 | MS.gene048046:intron | 60.0% | |
| AGTGGTGGTAAAGGGGGTGG+AGG | - | chr3.3:74042644-74042663 | MS.gene048046:intron | 60.0% | |
| CCACCCCCTTTACCACCACT+AGG | + | chr3.3:74042644-74042663 | None:intergenic | 60.0% | |
| CCTAGTGGTGGTAAAGGGGG+TGG | - | chr3.3:74042641-74042660 | MS.gene048046:intron | 60.0% | |
| GCCTCCGTTTGAGCTTCCAC+TGG | + | chr3.3:74042597-74042616 | None:intergenic | 60.0% | |
| TGCCATATTGCGTGTCCGCC+TGG | + | chr3.3:74042569-74042588 | None:intergenic | 60.0% | |
| ! | CCACCCCGTTTTCCACTTCC+GGG | + | chr3.3:74042689-74042708 | None:intergenic | 60.0% |
| AGCTCAAACGGAGGCGGTGG+TGG | - | chr3.3:74042602-74042621 | MS.gene048046:intron | 65.0% | |
| CCCGGAAGTGGAAAACGGGG+TGG | - | chr3.3:74042686-74042705 | MS.gene048046:intron | 65.0% | |
| CTTTCCCGGCGGTGGAAACG+GGG | - | chr3.3:74042727-74042746 | MS.gene048046:intron | 65.0% | |
| GGAAGCTCAAACGGAGGCGG+TGG | - | chr3.3:74042599-74042618 | MS.gene048046:intron | 65.0% | |
| GGCCAGGCGGACACGCAATA+TGG | - | chr3.3:74042564-74042583 | MS.gene048046:intron | 65.0% | |
| GGTGGTAAAGGGGGTGGAGG+TGG | - | chr3.3:74042647-74042666 | MS.gene048046:intron | 65.0% | |
| TTTCCCGGCGGTGGAAACGG+GGG | - | chr3.3:74042728-74042747 | MS.gene048046:intron | 65.0% | |
| CCTCCCCCGTTTCCACCGCC+GGG | + | chr3.3:74042734-74042753 | None:intergenic | 75.0% | |
| GCCTCCCCCGTTTCCACCGC+CGG | + | chr3.3:74042735-74042754 | None:intergenic | 75.0% | |
| GGCGGTGGAAACGGGGGAGG+CGG | - | chr3.3:74042734-74042753 | MS.gene048046:intron | 75.0% | |
| GGTGGAAACGGGGGAGGCGG+AGG | - | chr3.3:74042737-74042756 | MS.gene048046:intron | 75.0% | |
| ! | CCCGGCGGTGGAAACGGGGG+AGG | - | chr3.3:74042731-74042750 | MS.gene048046:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 74038987 | 74042814 | 74038987 | ID=MS.gene048046 |
| chr3.3 | mRNA | 74038987 | 74042814 | 74038987 | ID=MS.gene048046.t1;Parent=MS.gene048046 |
| chr3.3 | exon | 74042793 | 74042814 | 74042793 | ID=MS.gene048046.t1.exon1;Parent=MS.gene048046.t1 |
| chr3.3 | CDS | 74042793 | 74042814 | 74042793 | ID=cds.MS.gene048046.t1;Parent=MS.gene048046.t1 |
| chr3.3 | exon | 74042187 | 74042269 | 74042187 | ID=MS.gene048046.t1.exon2;Parent=MS.gene048046.t1 |
| chr3.3 | CDS | 74042187 | 74042269 | 74042187 | ID=cds.MS.gene048046.t1;Parent=MS.gene048046.t1 |
| chr3.3 | exon | 74041745 | 74042005 | 74041745 | ID=MS.gene048046.t1.exon3;Parent=MS.gene048046.t1 |
| chr3.3 | CDS | 74041745 | 74042005 | 74041745 | ID=cds.MS.gene048046.t1;Parent=MS.gene048046.t1 |
| chr3.3 | exon | 74041462 | 74041533 | 74041462 | ID=MS.gene048046.t1.exon4;Parent=MS.gene048046.t1 |
| chr3.3 | CDS | 74041462 | 74041533 | 74041462 | ID=cds.MS.gene048046.t1;Parent=MS.gene048046.t1 |
| chr3.3 | exon | 74040716 | 74040800 | 74040716 | ID=MS.gene048046.t1.exon5;Parent=MS.gene048046.t1 |
| chr3.3 | CDS | 74040716 | 74040800 | 74040716 | ID=cds.MS.gene048046.t1;Parent=MS.gene048046.t1 |
| chr3.3 | exon | 74038987 | 74039291 | 74038987 | ID=MS.gene048046.t1.exon6;Parent=MS.gene048046.t1 |
| chr3.3 | CDS | 74038987 | 74039291 | 74038987 | ID=cds.MS.gene048046.t1;Parent=MS.gene048046.t1 |
| Gene Sequence |
| Protein sequence |
