Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048052.t1 | XP_024634357.1 | 66 | 1050 | 145 | 19 | 1 | 861 | 1028 | 2054 | 0.00E+00 | 1120.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048052.t1 | Q2LAE1 | 34.8 | 916 | 356 | 29 | 81 | 838 | 826 | 1658 | 2.8e-112 | 407.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048052.t1 | A0A072V116 | 66.0 | 1050 | 145 | 19 | 1 | 861 | 922 | 1948 | 0.0e+00 | 1120.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048052.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048052.t1 | MTR_3g088625 | 67.840 | 1051 | 124 | 20 | 1 | 861 | 1028 | 2054 | 0.0 | 1284 |
| MS.gene048052.t1 | MTR_3g088625 | 67.840 | 1051 | 124 | 20 | 1 | 861 | 922 | 1948 | 0.0 | 1282 |
| MS.gene048052.t1 | MTR_1g098370 | 39.506 | 162 | 68 | 3 | 261 | 393 | 65 | 225 | 2.75e-27 | 117 |
| MS.gene048052.t1 | MTR_1g098000 | 38.889 | 162 | 69 | 3 | 261 | 393 | 62 | 222 | 9.96e-27 | 115 |
| MS.gene048052.t1 | MTR_0071s0100 | 47.917 | 96 | 49 | 1 | 298 | 393 | 242 | 336 | 4.15e-19 | 90.9 |
| MS.gene048052.t1 | MTR_6g059310 | 36.943 | 157 | 69 | 5 | 262 | 390 | 81 | 235 | 1.71e-18 | 88.6 |
| MS.gene048052.t1 | MTR_6g059310 | 36.943 | 157 | 69 | 5 | 262 | 390 | 81 | 235 | 1.71e-18 | 88.2 |
| MS.gene048052.t1 | MTR_1g012910 | 46.970 | 66 | 35 | 0 | 321 | 386 | 585 | 650 | 1.10e-11 | 68.9 |
| MS.gene048052.t1 | MTR_1g012910 | 46.970 | 66 | 35 | 0 | 321 | 386 | 422 | 487 | 1.36e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048052.t1 | AT1G77300 | 36.478 | 954 | 417 | 34 | 39 | 837 | 784 | 1703 | 5.70e-139 | 453 |
| MS.gene048052.t1 | AT1G77300 | 42.273 | 440 | 170 | 13 | 39 | 423 | 784 | 1194 | 3.54e-92 | 318 |
| MS.gene048052.t1 | AT1G77300 | 55.319 | 94 | 38 | 2 | 532 | 622 | 1347 | 1439 | 4.65e-17 | 87.0 |
| MS.gene048052.t1 | AT1G76710 | 34.498 | 229 | 98 | 6 | 196 | 393 | 9 | 216 | 1.14e-28 | 121 |
| MS.gene048052.t1 | AT1G76710 | 34.498 | 229 | 98 | 6 | 196 | 393 | 9 | 216 | 1.14e-28 | 121 |
| MS.gene048052.t1 | AT1G76710 | 34.498 | 229 | 98 | 6 | 196 | 393 | 9 | 216 | 1.74e-28 | 120 |
| MS.gene048052.t1 | AT1G76710 | 34.498 | 229 | 98 | 6 | 196 | 393 | 9 | 216 | 2.02e-28 | 120 |
| MS.gene048052.t1 | AT2G44150 | 45.161 | 93 | 50 | 1 | 298 | 390 | 148 | 239 | 2.37e-18 | 88.2 |
| MS.gene048052.t1 | AT3G59960 | 45.652 | 92 | 49 | 1 | 299 | 390 | 144 | 234 | 8.37e-18 | 85.5 |
| MS.gene048052.t1 | AT3G59960 | 45.652 | 92 | 49 | 1 | 299 | 390 | 144 | 234 | 8.37e-18 | 85.5 |
| MS.gene048052.t1 | AT3G59960 | 45.652 | 92 | 49 | 1 | 299 | 390 | 144 | 234 | 8.37e-18 | 85.5 |
| MS.gene048052.t1 | AT4G30860 | 35.897 | 156 | 74 | 5 | 263 | 393 | 298 | 452 | 1.19e-17 | 87.4 |
| MS.gene048052.t1 | AT3G59960 | 45.652 | 92 | 49 | 1 | 299 | 390 | 144 | 234 | 1.73e-17 | 85.1 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT5G42400 | 39.241 | 79 | 48 | 0 | 306 | 384 | 1289 | 1367 | 3.07e-12 | 71.2 |
| MS.gene048052.t1 | AT1G02580 | 51.562 | 64 | 31 | 0 | 321 | 384 | 597 | 660 | 9.38e-11 | 66.2 |
Find 211 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCTTCACTTTGTTAAT+TGG | 0.173393 | 3.3:-74407779 | None:intergenic |
| TTTCAACAGTGGATGGTAAA+TGG | 0.190581 | 3.3:+74413395 | MS.gene048052:intron |
| CGAGAATTGAATTTCTCTTT+TGG | 0.232990 | 3.3:-74417863 | None:intergenic |
| ATCAGTCAATGAATCTAATT+TGG | 0.253801 | 3.3:+74408088 | MS.gene048052:CDS |
| TCCATACTATTAGTATTAGA+AGG | 0.255465 | 3.3:-74418040 | None:intergenic |
| TTGCAAAATGCAAGCCATTC+TGG | 0.266578 | 3.3:+74417809 | MS.gene048052:CDS |
| TTGCTTCTCACTGTGGCTTC+AGG | 0.283344 | 3.3:+74415559 | MS.gene048052:CDS |
| CGGTTGTAGAACAGCCTTCC+TGG | 0.306840 | 3.3:-74417587 | None:intergenic |
| CCACATCCTAACTTGCCTTC+TGG | 0.307410 | 3.3:-74410319 | None:intergenic |
| GCCGTCTTCTAGAAGACCTT+TGG | 0.314283 | 3.3:+74407642 | MS.gene048052:CDS |
| ATTCAGTATCACACAATCAT+AGG | 0.322676 | 3.3:+74417472 | MS.gene048052:CDS |
| TCTCGTTTGCCTGTCTCATA+TGG | 0.340166 | 3.3:+74417881 | MS.gene048052:CDS |
| TCTGTGATATCCCGTGGATA+TGG | 0.345446 | 3.3:-74418010 | None:intergenic |
| CGTTTGATTACAACTATGTA+AGG | 0.352667 | 3.3:+74414333 | MS.gene048052:CDS |
| TTAAGAAGCTTTCGTAGTAT+TGG | 0.355229 | 3.3:-74416010 | None:intergenic |
| CATTGTACCTCTGAACTTGT+AGG | 0.355576 | 3.3:+74410270 | MS.gene048052:CDS |
| TCCGTAAGCATCATGGGTTC+TGG | 0.356954 | 3.3:-74414475 | None:intergenic |
| TTCAACAGTGGATGGTAAAT+GGG | 0.359427 | 3.3:+74413396 | MS.gene048052:intron |
| TAGAAGAATTTCTCAACAAA+TGG | 0.361899 | 3.3:+74414751 | MS.gene048052:CDS |
| TTTCTGAATTCCAGGGTTCT+GGG | 0.362785 | 3.3:+74407614 | MS.gene048052:CDS |
| GGGTGTTGGGTCACTGCTCC+TGG | 0.364043 | 3.3:+74417956 | MS.gene048052:CDS |
| AGGCAGAAAACGTGGCTATA+TGG | 0.364375 | 3.3:+74417397 | MS.gene048052:intron |
| TTCAGAGGTACAATGAATAA+TGG | 0.364920 | 3.3:-74410262 | None:intergenic |
| CCACCTCCAGAAGGCAAGTT+AGG | 0.365377 | 3.3:+74410313 | MS.gene048052:CDS |
| AATGCTGAGGTTATAGTTCA+TGG | 0.370711 | 3.3:+74414433 | MS.gene048052:intron |
| GCAGAGATTAATGCAGAGTT+AGG | 0.371338 | 3.3:+74408725 | MS.gene048052:CDS |
| CAATCAATTTCTTCTTCCTT+AGG | 0.372328 | 3.3:-74417513 | None:intergenic |
| CTGTGATATCCCGTGGATAT+GGG | 0.382643 | 3.3:-74418009 | None:intergenic |
| ACATTTAAACCACTTCAATC+TGG | 0.387836 | 3.3:-74410529 | None:intergenic |
| ACCTCTGAACTTGTAGGTAA+TGG | 0.388035 | 3.3:+74410276 | MS.gene048052:CDS |
| GGGGAAACTAAATGAGTTGC+TGG | 0.393652 | 3.3:+74415137 | MS.gene048052:CDS |
| CAAAAGTTTCAAGTAGCCTT+TGG | 0.400812 | 3.3:-74415539 | None:intergenic |
| CTACTTCAGCTGAGTGCAAA+AGG | 0.403773 | 3.3:-74414692 | None:intergenic |
| AGAAGAATTTCTCAACAAAT+GGG | 0.405459 | 3.3:+74414752 | MS.gene048052:CDS |
| AATGAGTTGCTGGATGGAAA+TGG | 0.407386 | 3.3:+74415147 | MS.gene048052:CDS |
| CCGTCTTCTAGAAGACCTTT+GGG | 0.409005 | 3.3:+74407643 | MS.gene048052:CDS |
| TGCAAGTGCAAAAGGAAACT+TGG | 0.421478 | 3.3:+74413001 | MS.gene048052:CDS |
| CTTTGACGTGCCTCGTATGC+AGG | 0.427909 | 3.3:-74411553 | None:intergenic |
| CAGAAGAGCGTCAAGGATCA+TGG | 0.429608 | 3.3:-74415771 | None:intergenic |
| GTAAATGGGGAAATCTGTAT+TGG | 0.430423 | 3.3:+74413410 | MS.gene048052:CDS |
| CGACAGACCATGCTGGCAGC+AGG | 0.430454 | 3.3:-74414797 | None:intergenic |
| GTCTTCTATTCATTTATTGA+CGG | 0.430869 | 3.3:+74414558 | MS.gene048052:CDS |
| TCATAAAATAGAAATGTCTA+TGG | 0.430926 | 3.3:-74411594 | None:intergenic |
| CTATTCATTTATTGACGGAC+AGG | 0.431304 | 3.3:+74414563 | MS.gene048052:CDS |
| ATGAGTTGCTGGATGGAAAT+GGG | 0.432717 | 3.3:+74415148 | MS.gene048052:CDS |
| CCTAACTTGCCTTCTGGAGG+TGG | 0.437776 | 3.3:-74410313 | None:intergenic |
| TGCAGTTCGTTTCATCAATC+CGG | 0.440839 | 3.3:-74408220 | None:intergenic |
| ATCCGGTCAGCAAGCAAAGC+TGG | 0.442883 | 3.3:-74408203 | None:intergenic |
| AGCGGAAATCACAGGGTGTT+GGG | 0.444043 | 3.3:+74417943 | MS.gene048052:CDS |
| TCATACCTCACTGCCATTCA+AGG | 0.444050 | 3.3:-74411617 | None:intergenic |
| TACGGAAGATGGTGTAGTTA+AGG | 0.445401 | 3.3:+74414492 | MS.gene048052:CDS |
| ATCAACATTATCACAGTACT+TGG | 0.445406 | 3.3:-74414530 | None:intergenic |
| GACAGAGCATGATGACAAAC+AGG | 0.452177 | 3.3:+74417125 | MS.gene048052:CDS |
| TCCAATGGACGGTTTGAAGC+AGG | 0.454802 | 3.3:+74415032 | MS.gene048052:CDS |
| AAAAGGGAAACGGCAGATGC+AGG | 0.456122 | 3.3:-74414675 | None:intergenic |
| GTGATAGATGCAAGTGCAAA+AGG | 0.457439 | 3.3:+74412993 | MS.gene048052:CDS |
| AATGGGTGAGAAGGCATGCC+AGG | 0.458001 | 3.3:-74417974 | None:intergenic |
| GACTGATACTCTGTTGTCAC+TGG | 0.458995 | 3.3:-74408072 | None:intergenic |
| GGACCGCTGTTGATATGTTC+AGG | 0.460206 | 3.3:-74416719 | None:intergenic |
| CTCAGTCGCCGCGTAATGCA+TGG | 0.460257 | 3.3:+74408144 | MS.gene048052:CDS |
| CCCTCTAGTTTAGTCACTAC+TGG | 0.460485 | 3.3:+74417836 | MS.gene048052:CDS |
| ACCATGCTGGCAGCAGGGCA+TGG | 0.462639 | 3.3:-74414791 | None:intergenic |
| TTCCAGCTTTGCTTGCTGAC+CGG | 0.467741 | 3.3:+74408201 | MS.gene048052:CDS |
| CCCATGATGCTTACGGAAGA+TGG | 0.472481 | 3.3:+74414481 | MS.gene048052:CDS |
| TCTTCTATTTGATCAGAAGA+TGG | 0.474881 | 3.3:-74414735 | None:intergenic |
| TTCTCCTTGCGTCCAGTAGT+AGG | 0.479236 | 3.3:-74407746 | None:intergenic |
| TTCAGTAGATGCTGGCTCCC+AGG | 0.480775 | 3.3:+74417569 | MS.gene048052:CDS |
| CTTCTGGAGGTGGCTTGCAA+TGG | 0.483157 | 3.3:-74410303 | None:intergenic |
| ACTGCGGTGCTGAAACTCAT+TGG | 0.484729 | 3.3:-74409009 | None:intergenic |
| CGGTCCTCCTTGTCGTGGAA+TGG | 0.485164 | 3.3:+74416736 | MS.gene048052:CDS |
| GGTCAAACATCTGGTGATCA+TGG | 0.486471 | 3.3:+74407589 | MS.gene048052:CDS |
| ACCATCTTCCGTAAGCATCA+TGG | 0.489670 | 3.3:-74414482 | None:intergenic |
| AGCTGAGTGCAAAAGGGAAA+CGG | 0.491699 | 3.3:-74414685 | None:intergenic |
| TCAAAACCTTGCCTGCTGCC+AGG | 0.492117 | 3.3:-74416694 | None:intergenic |
| GCAAGTGCAAAAGGAAACTT+GGG | 0.496721 | 3.3:+74413002 | MS.gene048052:CDS |
| AGACAGGCTGGTCAAACATC+TGG | 0.499719 | 3.3:+74407580 | None:intergenic |
| CAAAGTGAAGCCAAGGGTAA+AGG | 0.500492 | 3.3:+74407787 | MS.gene048052:CDS |
| CCAGAAGGCAAGTTAGGATG+TGG | 0.501691 | 3.3:+74410319 | MS.gene048052:CDS |
| GAAAACGTGGCTATATGGAC+AGG | 0.502348 | 3.3:+74417402 | MS.gene048052:CDS |
| GCACTGTTTAATGAACGTAT+TGG | 0.502973 | 3.3:-74417764 | None:intergenic |
| TAAATGGGGAAATCTGTATT+GGG | 0.503299 | 3.3:+74413411 | MS.gene048052:CDS |
| CCATCTTCCGTAAGCATCAT+GGG | 0.509094 | 3.3:-74414481 | None:intergenic |
| ACACAATCATAGGGACGAGC+AGG | 0.512393 | 3.3:+74417482 | MS.gene048052:CDS |
| AAGCGGAAATCACAGGGTGT+TGG | 0.513743 | 3.3:+74417942 | MS.gene048052:CDS |
| ATTGACGGACAGGGATGCAT+TGG | 0.513969 | 3.3:+74414573 | MS.gene048052:CDS |
| AGAGGAGACACCTTTACCCT+TGG | 0.515485 | 3.3:-74407797 | None:intergenic |
| CATATAAAGCTACCTGGATG+CGG | 0.516319 | 3.3:-74407848 | None:intergenic |
| CCCATGCCCTGCTGCCAGCA+TGG | 0.516846 | 3.3:+74414790 | MS.gene048052:CDS |
| CCATGCTGGCAGCAGGGCAT+GGG | 0.517058 | 3.3:-74414790 | None:intergenic |
| TCCTAATTGTCGGACAGAAA+AGG | 0.517701 | 3.3:+74413049 | MS.gene048052:CDS |
| TTCTGAATTCCAGGGTTCTG+GGG | 0.518245 | 3.3:+74407615 | MS.gene048052:CDS |
| AGAGTACCTGGCAGCAGGCA+AGG | 0.518795 | 3.3:+74416688 | MS.gene048052:intron |
| TCTTAAGAGTACCTGGCAGC+AGG | 0.518802 | 3.3:+74416683 | MS.gene048052:intron |
| TGGCTGCCATCTCAGCTGTA+AGG | 0.519362 | 3.3:-74414959 | None:intergenic |
| ACTCCTCAAGCGGAAATCAC+AGG | 0.520947 | 3.3:+74417935 | MS.gene048052:CDS |
| AAGTTTCAAGTAGCCTTTGG+TGG | 0.520956 | 3.3:-74415536 | None:intergenic |
| GCAGTCAAAAGACCTACTAC+TGG | 0.521575 | 3.3:+74407734 | MS.gene048052:intron |
| ACCTGCTTCAAACCGTCCAT+TGG | 0.522077 | 3.3:-74415033 | None:intergenic |
| TCCAGAACCCATGATGCTTA+CGG | 0.522239 | 3.3:+74414474 | MS.gene048052:CDS |
| CACCCTGTGATTTCCGCTTG+AGG | 0.525149 | 3.3:-74417938 | None:intergenic |
| AACTCATTGGTTGAAAATGC+GGG | 0.528612 | 3.3:-74408996 | None:intergenic |
| GGACAGGGATGATAATATGT+TGG | 0.529080 | 3.3:+74417418 | MS.gene048052:CDS |
| AATCATAAGTTGGATGCTGT+TGG | 0.531864 | 3.3:+74408038 | MS.gene048052:CDS |
| CCATACTATTAGTATTAGAA+GGG | 0.535800 | 3.3:-74418039 | None:intergenic |
| ACTTCGTGTGTAACTTTGAG+AGG | 0.536479 | 3.3:-74407815 | None:intergenic |
| TGTGTTTGATAGATGGGCAC+TGG | 0.536612 | 3.3:-74414990 | None:intergenic |
| TGAGTTGCTGGATGGAAATG+GGG | 0.539055 | 3.3:+74415149 | MS.gene048052:CDS |
| ATAGTTGTGATCCTAATTGT+CGG | 0.541297 | 3.3:+74413039 | MS.gene048052:CDS |
| ATAAGATCATGAAGCAGTAC+AGG | 0.544962 | 3.3:+74415968 | MS.gene048052:CDS |
| GTGGAAGATCACCCGCATCC+AGG | 0.545045 | 3.3:+74407836 | MS.gene048052:CDS |
| GATGGGCACTGGCAATCGAT+TGG | 0.545095 | 3.3:-74414979 | None:intergenic |
| AACTAGAGGGCCATCCAGAA+TGG | 0.545297 | 3.3:-74417823 | None:intergenic |
| TGTGGGATGAATGTCTAAAT+CGG | 0.546594 | 3.3:+74410337 | MS.gene048052:CDS |
| TACTTCAGCTGAGTGCAAAA+GGG | 0.546946 | 3.3:-74414691 | None:intergenic |
| ATTAGTGAAGAAATTCCACC+TGG | 0.547236 | 3.3:+74417731 | MS.gene048052:CDS |
| CGCATTGCGGAATATCAAGC+AGG | 0.547348 | 3.3:+74413439 | MS.gene048052:CDS |
| TCAAAGAGAGTATGCTGTGA+AGG | 0.547472 | 3.3:+74411570 | MS.gene048052:CDS |
| TTAGGATTATCATATGCCTC+TGG | 0.547631 | 3.3:+74408743 | MS.gene048052:CDS |
| AGGACCTCTGAATTGCTTCA+CGG | 0.549959 | 3.3:-74415594 | None:intergenic |
| TGTCTGTTGCCTCAGCAATA+CGG | 0.553028 | 3.3:+74417911 | MS.gene048052:CDS |
| CATGGCATTCCATATGAGAC+AGG | 0.553338 | 3.3:-74417890 | None:intergenic |
| ATATAAAGCTACCTGGATGC+GGG | 0.555442 | 3.3:-74407847 | None:intergenic |
| TTCAGTATCACACAATCATA+GGG | 0.555928 | 3.3:+74417473 | MS.gene048052:CDS |
| TGTTCTCCCAAATCAAAACT+AGG | 0.556959 | 3.3:-74408119 | None:intergenic |
| CCTTGACATGCCTGCATACG+AGG | 0.557853 | 3.3:+74411543 | MS.gene048052:CDS |
| TCAACAGTGGATGGTAAATG+GGG | 0.558827 | 3.3:+74413397 | MS.gene048052:intron |
| TGCTGTTGGAAATCATAAGT+TGG | 0.561854 | 3.3:+74408028 | MS.gene048052:CDS |
| AAAGGGAAACGGCAGATGCA+GGG | 0.565323 | 3.3:-74414674 | None:intergenic |
| ACGGCAAATCCCCAGAACCC+TGG | 0.566390 | 3.3:-74407624 | None:intergenic |
| TGTGGTTCACCTCATTGTCG+AGG | 0.569578 | 3.3:+74414385 | MS.gene048052:CDS |
| CAATTAACAAAGTGAAGCCA+AGG | 0.571366 | 3.3:+74407780 | MS.gene048052:CDS |
| TCGAAGGTGCTTCCAATGGA+CGG | 0.572817 | 3.3:+74415021 | MS.gene048052:CDS |
| AGATTGAAGTGGTTTAAATG+TGG | 0.572843 | 3.3:+74410531 | MS.gene048052:CDS |
| AAACTCATTGGTTGAAAATG+CGG | 0.574360 | 3.3:-74408997 | None:intergenic |
| GTGGTCGAAGGTGCTTCCAA+TGG | 0.574590 | 3.3:+74415017 | MS.gene048052:CDS |
| TATTCATTTATTGACGGACA+GGG | 0.576884 | 3.3:+74414564 | MS.gene048052:CDS |
| AAATCGCCTTACAGCTGAGA+TGG | 0.576893 | 3.3:+74414953 | MS.gene048052:CDS |
| CCTCGTATGCAGGCATGTCA+AGG | 0.577534 | 3.3:-74411543 | None:intergenic |
| GGTTGTAGAACAGCCTTCCT+GGG | 0.577884 | 3.3:-74417586 | None:intergenic |
| CATCCTAACTTGCCTTCTGG+AGG | 0.578057 | 3.3:-74410316 | None:intergenic |
| TCTCAAAGTTACACACGAAG+TGG | 0.579509 | 3.3:+74407817 | MS.gene048052:CDS |
| ATTGGAGCAACGTCCCCACA+TGG | 0.579922 | 3.3:-74410393 | None:intergenic |
| ACTTCAACTTCAGTAGATGC+TGG | 0.581263 | 3.3:+74417561 | MS.gene048052:CDS |
| GCGAGTATTCCAGATTGAAG+TGG | 0.582407 | 3.3:+74410520 | MS.gene048052:CDS |
| TTCGGTAGTTTACGACCCAA+AGG | 0.583850 | 3.3:-74407658 | None:intergenic |
| TCAGTCGCCGCGTAATGCAT+GGG | 0.587562 | 3.3:+74408145 | MS.gene048052:CDS |
| ATTGGAATATCGACTACCAC+CGG | 0.587717 | 3.3:+74408805 | MS.gene048052:CDS |
| GTAGATGCTGGCTCCCAGGA+AGG | 0.588353 | 3.3:+74417573 | MS.gene048052:CDS |
| GACAGACCATGCTGGCAGCA+GGG | 0.589625 | 3.3:-74414796 | None:intergenic |
| TTGTCATAGGATGCCACCAA+AGG | 0.590097 | 3.3:+74415523 | MS.gene048052:intron |
| TGTGATATCCCGTGGATATG+GGG | 0.592086 | 3.3:-74418008 | None:intergenic |
| TTAAACAGTGCACTAAACTC+TGG | 0.594335 | 3.3:+74417776 | MS.gene048052:CDS |
| ACAACTGCTATAGATGAAGA+TGG | 0.594412 | 3.3:+74414604 | MS.gene048052:CDS |
| TAGAATTCGACAGACCATGC+TGG | 0.594780 | 3.3:-74414804 | None:intergenic |
| AAACTAAATGAGTTGCTGGA+TGG | 0.596646 | 3.3:+74415141 | MS.gene048052:CDS |
| AAGGAAGAAGAAATTGATTG+TGG | 0.597789 | 3.3:+74417516 | MS.gene048052:CDS |
| CGAGCAGGGATTAAGACCTA+AGG | 0.597802 | 3.3:+74417497 | MS.gene048052:CDS |
| AAAATGCAAGCCATTCTGGA+TGG | 0.598409 | 3.3:+74417813 | MS.gene048052:CDS |
| AACAGCGGTCCTCCTTGTCG+TGG | 0.600984 | 3.3:+74416731 | MS.gene048052:CDS |
| CTCCTCAAGCGGAAATCACA+GGG | 0.601118 | 3.3:+74417936 | MS.gene048052:CDS |
| AAGACCTACTACTGGACGCA+AGG | 0.601204 | 3.3:+74407742 | MS.gene048052:CDS |
| GAGTTGCTGGATGGAAATGG+GGG | 0.602130 | 3.3:+74415150 | MS.gene048052:CDS |
| CTTAACATTGAATGTGTGCA+AGG | 0.603715 | 3.3:+74410363 | MS.gene048052:CDS |
| GTTTGATTACAACTATGTAA+GGG | 0.603755 | 3.3:+74414334 | MS.gene048052:CDS |
| CTCCTTGTCGTGGAATGGAG+AGG | 0.603817 | 3.3:+74416741 | MS.gene048052:CDS |
| CCTATATAACCTCGACAATG+AGG | 0.604787 | 3.3:-74414394 | None:intergenic |
| GTCGCGTCAGCAGATGCTGT+TGG | 0.606167 | 3.3:+74408014 | MS.gene048052:intron |
| TTATCACAGTACTTGGGCAT+AGG | 0.609261 | 3.3:-74414523 | None:intergenic |
| CAAAGAGAGTATGCTGTGAA+GGG | 0.609455 | 3.3:+74411571 | MS.gene048052:CDS |
| AGTGGCGGAAATGGGTGAGA+AGG | 0.611032 | 3.3:-74417983 | None:intergenic |
| ACTGATACTCTGTTGTCACT+GGG | 0.611710 | 3.3:-74408071 | None:intergenic |
| TATTGCTGAGGCAACAGACA+TGG | 0.612216 | 3.3:-74417908 | None:intergenic |
| CCCAAAGGTCTTCTAGAAGA+CGG | 0.613302 | 3.3:-74407643 | None:intergenic |
| ACATACATCTTCTTCACCAG+AGG | 0.613865 | 3.3:-74408759 | None:intergenic |
| TGCAAGGAACTTGCCCATGT+GGG | 0.614879 | 3.3:+74410379 | MS.gene048052:CDS |
| ACCATTACCTACAAGTTCAG+AGG | 0.615377 | 3.3:-74410277 | None:intergenic |
| CATTGCAAGCCACCTCCAGA+AGG | 0.624193 | 3.3:+74410304 | MS.gene048052:CDS |
| TTGGAATATCGACTACCACC+GGG | 0.626301 | 3.3:+74408806 | MS.gene048052:CDS |
| CAGAAGGCAAGTTAGGATGT+GGG | 0.628309 | 3.3:+74410320 | MS.gene048052:CDS |
| TGAGGAGTTCCGTATTGCTG+AGG | 0.629044 | 3.3:-74417920 | None:intergenic |
| GTATTGGGCTGTTCGCATTG+CGG | 0.629823 | 3.3:+74413426 | MS.gene048052:CDS |
| CATGCATTACGCGGCGACTG+AGG | 0.631226 | 3.3:-74408143 | None:intergenic |
| GAAGAATTTCTCAACAAATG+GGG | 0.634124 | 3.3:+74414753 | MS.gene048052:CDS |
| ATTCCTCAACTGCAGTTCAG+GGG | 0.636635 | 3.3:+74415118 | MS.gene048052:intron |
| GTGATATCCCGTGGATATGG+GGG | 0.638535 | 3.3:-74418007 | None:intergenic |
| ACCAGTAGTGACTAAACTAG+AGG | 0.640910 | 3.3:-74417837 | None:intergenic |
| AGGGATAGCACAATCAGCAA+AGG | 0.643038 | 3.3:-74408687 | None:intergenic |
| CAACTCACCCATGCATTACG+CGG | 0.645588 | 3.3:-74408152 | None:intergenic |
| CACAATCATAGGGACGAGCA+GGG | 0.647144 | 3.3:+74417483 | MS.gene048052:CDS |
| GACCTCTCCATTCCACGACA+AGG | 0.647921 | 3.3:-74416743 | None:intergenic |
| CCAGTAGTGACTAAACTAGA+GGG | 0.648862 | 3.3:-74417836 | None:intergenic |
| TGACAGTCTGTGATATCCCG+TGG | 0.652016 | 3.3:-74418016 | None:intergenic |
| GCAATACGGAACTCCTCAAG+CGG | 0.652119 | 3.3:+74417925 | MS.gene048052:CDS |
| TCAACATTATCACAGTACTT+GGG | 0.654003 | 3.3:-74414529 | None:intergenic |
| AAGAAATTGATTGTGGTCAG+CGG | 0.655187 | 3.3:+74417523 | MS.gene048052:CDS |
| AACAGTGCACTAAACTCTGG+CGG | 0.669394 | 3.3:+74417779 | MS.gene048052:CDS |
| GTGCAAGGAACTTGCCCATG+TGG | 0.677364 | 3.3:+74410378 | MS.gene048052:CDS |
| GCAAGGAACTTGCCCATGTG+GGG | 0.677391 | 3.3:+74410380 | MS.gene048052:CDS |
| TTGGAGCAACGTCCCCACAT+GGG | 0.680649 | 3.3:-74410392 | None:intergenic |
| AATTAACAAAGTGAAGCCAA+GGG | 0.681119 | 3.3:+74407781 | MS.gene048052:CDS |
| GCAACCGTGAAGCAATTCAG+AGG | 0.683956 | 3.3:+74415590 | MS.gene048052:CDS |
| AAAACGTGGCTATATGGACA+GGG | 0.689647 | 3.3:+74417403 | MS.gene048052:CDS |
| TATGACCTTGAATGGCAGTG+AGG | 0.690530 | 3.3:+74411612 | MS.gene048052:CDS |
| CTCTCCATTCCACGACAAGG+AGG | 0.694119 | 3.3:-74416740 | None:intergenic |
| GTTGTGATGATTGTCACAAG+TGG | 0.694979 | 3.3:+74408171 | MS.gene048052:CDS |
| CGTATTGGACATGAAAACCC+AGG | 0.702002 | 3.3:-74417749 | None:intergenic |
| TTAGTGAAGAAATTCCACCT+GGG | 0.711962 | 3.3:+74417732 | MS.gene048052:CDS |
| GTGATGATTGTCACAAGTGG+CGG | 0.717012 | 3.3:+74408174 | MS.gene048052:CDS |
| ATTGGACATGAAAACCCAGG+TGG | 0.738932 | 3.3:-74417746 | None:intergenic |
| ACACCTGAACATATCAACAG+CGG | 0.753702 | 3.3:+74416716 | MS.gene048052:CDS |
| CAAGTGCAAAAGGAAACTTG+GGG | 0.825569 | 3.3:+74413003 | MS.gene048052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 74407586 | 74418055 | 74407586 | ID=MS.gene048052 |
| chr3.3 | mRNA | 74407586 | 74418055 | 74407586 | ID=MS.gene048052.t1;Parent=MS.gene048052 |
| chr3.3 | exon | 74407586 | 74407682 | 74407586 | ID=MS.gene048052.t1.exon1;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74407586 | 74407682 | 74407586 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74407738 | 74407857 | 74407738 | ID=MS.gene048052.t1.exon2;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74407738 | 74407857 | 74407738 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74408024 | 74408245 | 74408024 | ID=MS.gene048052.t1.exon3;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74408024 | 74408245 | 74408024 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74408687 | 74408827 | 74408687 | ID=MS.gene048052.t1.exon4;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74408687 | 74408827 | 74408687 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74408973 | 74409055 | 74408973 | ID=MS.gene048052.t1.exon5;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74408973 | 74409055 | 74408973 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74410225 | 74410404 | 74410225 | ID=MS.gene048052.t1.exon6;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74410225 | 74410404 | 74410225 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74410510 | 74410560 | 74410510 | ID=MS.gene048052.t1.exon7;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74410510 | 74410560 | 74410510 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74411541 | 74411633 | 74411541 | ID=MS.gene048052.t1.exon8;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74411541 | 74411633 | 74411541 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74412993 | 74413070 | 74412993 | ID=MS.gene048052.t1.exon9;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74412993 | 74413070 | 74412993 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74413404 | 74413460 | 74413404 | ID=MS.gene048052.t1.exon10;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74413404 | 74413460 | 74413404 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74414320 | 74414406 | 74414320 | ID=MS.gene048052.t1.exon11;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74414320 | 74414406 | 74414320 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74414442 | 74414625 | 74414442 | ID=MS.gene048052.t1.exon12;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74414442 | 74414625 | 74414442 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74414664 | 74414815 | 74414664 | ID=MS.gene048052.t1.exon13;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74414664 | 74414815 | 74414664 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74414930 | 74415053 | 74414930 | ID=MS.gene048052.t1.exon14;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74414930 | 74415053 | 74414930 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74415133 | 74415188 | 74415133 | ID=MS.gene048052.t1.exon15;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74415133 | 74415188 | 74415133 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74415532 | 74415611 | 74415532 | ID=MS.gene048052.t1.exon16;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74415532 | 74415611 | 74415532 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74415757 | 74415812 | 74415757 | ID=MS.gene048052.t1.exon17;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74415757 | 74415812 | 74415757 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74415953 | 74416023 | 74415953 | ID=MS.gene048052.t1.exon18;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74415953 | 74416023 | 74415953 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74416692 | 74416762 | 74416692 | ID=MS.gene048052.t1.exon19;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74416692 | 74416762 | 74416692 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74417107 | 74417146 | 74417107 | ID=MS.gene048052.t1.exon20;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74417107 | 74417146 | 74417107 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74417399 | 74417608 | 74417399 | ID=MS.gene048052.t1.exon21;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74417399 | 74417608 | 74417399 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| chr3.3 | exon | 74417725 | 74418055 | 74417725 | ID=MS.gene048052.t1.exon22;Parent=MS.gene048052.t1 |
| chr3.3 | CDS | 74417725 | 74418055 | 74417725 | ID=cds.MS.gene048052.t1;Parent=MS.gene048052.t1 |
| Gene Sequence |
| Protein sequence |
