Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048089.t1 | XP_013454907.1 | 98.7 | 391 | 3 | 1 | 1 | 391 | 213 | 601 | 2.50E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048089.t1 | Q9LZM8 | 50.5 | 408 | 164 | 9 | 2 | 391 | 188 | 575 | 9.2e-71 | 268.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048089.t1 | A0A072USU8 | 98.7 | 391 | 3 | 1 | 1 | 391 | 213 | 601 | 1.8e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048089.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048089.t1 | MTR_4g019450 | 98.210 | 391 | 5 | 1 | 1 | 391 | 213 | 601 | 0.0 | 806 |
| MS.gene048089.t1 | MTR_7g065050 | 59.900 | 399 | 116 | 12 | 1 | 391 | 154 | 516 | 2.42e-154 | 445 |
| MS.gene048089.t1 | MTR_2g095050 | 55.385 | 195 | 72 | 1 | 41 | 220 | 317 | 511 | 1.33e-66 | 222 |
| MS.gene048089.t1 | MTR_8g078480 | 54.884 | 215 | 86 | 4 | 31 | 236 | 452 | 664 | 4.50e-66 | 225 |
| MS.gene048089.t1 | MTR_7g106320 | 48.523 | 237 | 96 | 4 | 43 | 265 | 250 | 474 | 1.57e-64 | 218 |
| MS.gene048089.t1 | MTR_5g018860 | 50.216 | 231 | 105 | 3 | 20 | 242 | 390 | 618 | 7.18e-64 | 218 |
| MS.gene048089.t1 | MTR_1g023050 | 54.545 | 176 | 76 | 1 | 43 | 218 | 255 | 426 | 2.07e-61 | 209 |
| MS.gene048089.t1 | MTR_1g057790 | 46.586 | 249 | 106 | 4 | 43 | 281 | 238 | 469 | 9.32e-61 | 207 |
| MS.gene048089.t1 | MTR_4g051532 | 51.759 | 199 | 89 | 3 | 43 | 236 | 294 | 490 | 1.15e-59 | 206 |
| MS.gene048089.t1 | MTR_8g098815 | 54.839 | 186 | 60 | 3 | 41 | 211 | 256 | 432 | 3.11e-59 | 202 |
| MS.gene048089.t1 | MTR_3g112300 | 53.409 | 176 | 78 | 1 | 43 | 218 | 244 | 415 | 1.05e-58 | 199 |
| MS.gene048089.t1 | MTR_3g112300 | 53.409 | 176 | 78 | 1 | 43 | 218 | 244 | 415 | 2.34e-58 | 200 |
| MS.gene048089.t1 | MTR_3g112290 | 47.179 | 195 | 85 | 3 | 44 | 226 | 238 | 426 | 1.11e-56 | 192 |
| MS.gene048089.t1 | MTR_3g112300 | 49.020 | 153 | 74 | 1 | 43 | 195 | 244 | 392 | 3.54e-43 | 155 |
| MS.gene048089.t1 | MTR_1g016490 | 38.071 | 197 | 118 | 4 | 43 | 238 | 322 | 515 | 1.62e-37 | 142 |
| MS.gene048089.t1 | MTR_3g112300 | 45.455 | 132 | 68 | 1 | 43 | 174 | 244 | 371 | 3.63e-31 | 122 |
| MS.gene048089.t1 | MTR_5g033720 | 54.902 | 51 | 23 | 0 | 159 | 209 | 246 | 296 | 7.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048089.t1 | AT5G02030 | 50.135 | 371 | 131 | 11 | 46 | 391 | 234 | 575 | 2.75e-94 | 293 |
| MS.gene048089.t1 | AT4G34610 | 40.782 | 358 | 168 | 13 | 44 | 391 | 209 | 532 | 1.30e-62 | 210 |
| MS.gene048089.t1 | AT4G34610 | 40.782 | 358 | 168 | 13 | 44 | 391 | 209 | 532 | 1.30e-62 | 210 |
| MS.gene048089.t1 | AT4G34610 | 40.782 | 358 | 168 | 13 | 44 | 391 | 209 | 532 | 1.30e-62 | 210 |
| MS.gene048089.t1 | AT4G34610 | 40.782 | 358 | 168 | 13 | 44 | 391 | 209 | 532 | 1.30e-62 | 210 |
| MS.gene048089.t1 | AT4G36870 | 56.122 | 196 | 73 | 4 | 31 | 215 | 372 | 565 | 1.88e-61 | 211 |
| MS.gene048089.t1 | AT4G36870 | 56.122 | 196 | 73 | 4 | 31 | 215 | 372 | 565 | 1.88e-61 | 211 |
| MS.gene048089.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 6.25e-61 | 206 |
| MS.gene048089.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 6.25e-61 | 206 |
| MS.gene048089.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 6.25e-61 | 206 |
| MS.gene048089.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 6.25e-61 | 206 |
| MS.gene048089.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 6.25e-61 | 206 |
| MS.gene048089.t1 | AT1G75410 | 53.333 | 180 | 80 | 1 | 43 | 218 | 237 | 416 | 9.98e-61 | 204 |
| MS.gene048089.t1 | AT1G75410 | 53.333 | 180 | 80 | 1 | 43 | 218 | 237 | 416 | 9.98e-61 | 204 |
| MS.gene048089.t1 | AT2G16400 | 49.083 | 218 | 100 | 4 | 44 | 256 | 176 | 387 | 2.66e-60 | 202 |
| MS.gene048089.t1 | AT2G27990 | 57.303 | 178 | 71 | 2 | 43 | 220 | 324 | 496 | 2.93e-60 | 205 |
| MS.gene048089.t1 | AT2G23760 | 54.592 | 196 | 76 | 4 | 31 | 215 | 298 | 491 | 1.20e-59 | 204 |
| MS.gene048089.t1 | AT2G23760 | 54.592 | 196 | 76 | 4 | 31 | 215 | 298 | 491 | 1.20e-59 | 204 |
| MS.gene048089.t1 | AT2G23760 | 54.592 | 196 | 76 | 4 | 31 | 215 | 298 | 491 | 1.20e-59 | 204 |
| MS.gene048089.t1 | AT2G35940 | 48.035 | 229 | 90 | 4 | 43 | 248 | 272 | 494 | 1.41e-57 | 199 |
| MS.gene048089.t1 | AT2G35940 | 48.035 | 229 | 90 | 4 | 43 | 248 | 272 | 494 | 1.41e-57 | 199 |
| MS.gene048089.t1 | AT2G35940 | 48.035 | 229 | 90 | 4 | 43 | 248 | 272 | 494 | 1.41e-57 | 199 |
| MS.gene048089.t1 | AT5G41410 | 37.903 | 372 | 174 | 13 | 41 | 390 | 275 | 611 | 7.17e-56 | 194 |
| MS.gene048089.t1 | AT2G27220 | 38.462 | 299 | 137 | 8 | 43 | 332 | 136 | 396 | 1.40e-54 | 186 |
| MS.gene048089.t1 | AT2G27220 | 38.462 | 299 | 137 | 8 | 43 | 332 | 136 | 396 | 1.40e-54 | 186 |
| MS.gene048089.t1 | AT2G27220 | 38.305 | 295 | 135 | 8 | 47 | 332 | 158 | 414 | 5.25e-52 | 180 |
| MS.gene048089.t1 | AT2G23760 | 43.145 | 248 | 76 | 5 | 31 | 215 | 298 | 543 | 5.61e-50 | 179 |
| MS.gene048089.t1 | AT1G75430 | 42.574 | 202 | 98 | 5 | 44 | 232 | 90 | 286 | 5.23e-49 | 167 |
| MS.gene048089.t1 | AT4G36870 | 52.542 | 177 | 71 | 4 | 31 | 196 | 372 | 546 | 2.97e-47 | 169 |
| MS.gene048089.t1 | AT1G75410 | 50.318 | 157 | 74 | 1 | 43 | 195 | 237 | 393 | 2.94e-46 | 164 |
| MS.gene048089.t1 | AT4G36870 | 52.000 | 175 | 71 | 4 | 31 | 194 | 372 | 544 | 6.47e-46 | 166 |
| MS.gene048089.t1 | AT4G32980 | 37.853 | 177 | 95 | 3 | 43 | 215 | 274 | 439 | 1.41e-34 | 133 |
| MS.gene048089.t1 | AT4G32980 | 37.853 | 177 | 95 | 3 | 43 | 215 | 274 | 439 | 1.41e-34 | 133 |
| MS.gene048089.t1 | AT2G27990 | 46.970 | 132 | 65 | 2 | 43 | 174 | 324 | 450 | 1.74e-29 | 119 |
| MS.gene048089.t1 | AT1G75430 | 36.111 | 144 | 74 | 5 | 44 | 174 | 90 | 228 | 6.99e-22 | 95.1 |
| MS.gene048089.t1 | AT1G23380 | 52.727 | 55 | 26 | 0 | 155 | 209 | 255 | 309 | 2.51e-11 | 64.7 |
| MS.gene048089.t1 | AT1G23380 | 52.727 | 55 | 26 | 0 | 155 | 209 | 253 | 307 | 2.60e-11 | 64.7 |
| MS.gene048089.t1 | AT1G70510 | 52.727 | 55 | 26 | 0 | 155 | 209 | 237 | 291 | 8.43e-11 | 63.2 |
| MS.gene048089.t1 | AT1G70510 | 52.727 | 55 | 26 | 0 | 155 | 209 | 241 | 295 | 8.98e-11 | 63.2 |
Find 80 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAATTACCTTCATTAT+TGG | 0.154139 | 4.4:-81783340 | None:intergenic |
| GAATCACAAAATAGGCATTT+TGG | 0.235036 | 4.4:+81783375 | MS.gene048089:CDS |
| ACATCATTTGAGTATGTTTC+CGG | 0.258945 | 4.4:+81781819 | MS.gene048089:CDS |
| CTTCAAGCATCTAAAATGTT+TGG | 0.311343 | 4.4:-81781889 | None:intergenic |
| CTTTCACTATTGCCAAATCT+TGG | 0.311544 | 4.4:-81781984 | None:intergenic |
| TTTGATGATGGAATCTCCTT+TGG | 0.312465 | 4.4:+81778818 | MS.gene048089:CDS |
| TGACTCCTAATTGGTATGTT+AGG | 0.316989 | 4.4:-81783090 | None:intergenic |
| TGCAGCTCCTTATGCAAGTT+TGG | 0.333083 | 4.4:+81781851 | MS.gene048089:CDS |
| TGTTGTCCTTGACTCCTAAT+TGG | 0.334463 | 4.4:-81783099 | None:intergenic |
| CTTTATCAAAATCATGGAAT+TGG | 0.335858 | 4.4:+81783261 | MS.gene048089:CDS |
| AATCGTTGAGCTGCACTTAG+AGG | 0.350236 | 4.4:-81783300 | None:intergenic |
| CCAACTACAGTTCAATAATA+AGG | 0.350401 | 4.4:+81781926 | MS.gene048089:CDS |
| TTGTGTATCAGGTGTCAAAT+TGG | 0.359128 | 4.4:+81782839 | MS.gene048089:intron |
| TACCTTCATTATTGGTTTCA+AGG | 0.361603 | 4.4:-81783332 | None:intergenic |
| TGCTGATTCTTCTTTGATGA+TGG | 0.364670 | 4.4:+81778806 | MS.gene048089:CDS |
| ATCTTGGAGATTCTTCCTTC+CGG | 0.371264 | 4.4:-81781968 | None:intergenic |
| CTAAGTGCAGCTCAACGATT+TGG | 0.381700 | 4.4:+81783303 | MS.gene048089:CDS |
| GTTGGTAGTGGAAGCAATAA+TGG | 0.383790 | 4.4:+81783186 | MS.gene048089:CDS |
| AAGGAAGAATCTCCAAGATT+TGG | 0.395392 | 4.4:+81781972 | MS.gene048089:CDS |
| TAAATGCAAGAGTAAGGCTT+TGG | 0.402125 | 4.4:+81782866 | MS.gene048089:CDS |
| GTTGGAAATCTTGGTGTTTG+TGG | 0.405935 | 4.4:+81778765 | MS.gene048089:CDS |
| AAATTCCTAACATACCAATT+AGG | 0.407283 | 4.4:+81783085 | MS.gene048089:CDS |
| TGAGCTGCACTTAGAGGAAA+TGG | 0.414973 | 4.4:-81783294 | None:intergenic |
| ATTTACGGCGCGCTTGTAAG+TGG | 0.428680 | 4.4:-81783061 | None:intergenic |
| CCTTATTATTGAACTGTAGT+TGG | 0.430289 | 4.4:-81781926 | None:intergenic |
| GGTTCATAAATGCAAGAGTA+AGG | 0.433955 | 4.4:+81782860 | MS.gene048089:CDS |
| TATGTTAGGAATTTCATTTA+CGG | 0.436827 | 4.4:-81783076 | None:intergenic |
| TTTATCGCCAAACTTGCATA+AGG | 0.446881 | 4.4:-81781858 | None:intergenic |
| CTACAAAGTCATGAAACATT+TGG | 0.448894 | 4.4:-81783416 | None:intergenic |
| GCAGCTCAACGATTTGGTCT+TGG | 0.449764 | 4.4:+81783309 | MS.gene048089:CDS |
| AACAAAATGAAGAAAATTGT+AGG | 0.452610 | 4.4:+81782947 | MS.gene048089:CDS |
| CCTCTTTGAGGTCGCCATAC+AGG | 0.463860 | 4.4:-81782053 | None:intergenic |
| AACCGGTCTATCGCGTAGCC+AGG | 0.468227 | 4.4:+81782716 | MS.gene048089:CDS |
| CGCTCGGGGAGTCCTCTTTG+AGG | 0.471673 | 4.4:-81782065 | None:intergenic |
| ATGTGTGATGTTGGAAATCT+TGG | 0.472538 | 4.4:+81778756 | MS.gene048089:CDS |
| TTGAGTGAAGAAGATCCATT+TGG | 0.474029 | 4.4:+81778846 | MS.gene048089:CDS |
| TAACCTGACCTATGGCTGTA+AGG | 0.479106 | 4.4:-81782014 | None:intergenic |
| CCAACACCTACATGTTGAAA+AGG | 0.482247 | 4.4:-81783153 | None:intergenic |
| CTAGGACTTTATCAAAATCA+TGG | 0.485498 | 4.4:+81783255 | MS.gene048089:CDS |
| CAAATGTTTCATGACTTTGT+AGG | 0.488512 | 4.4:+81783417 | MS.gene048089:CDS |
| TCTTGGTGTTTGTGGTGAAA+AGG | 0.489743 | 4.4:+81778773 | MS.gene048089:CDS |
| TGTCGATGTAGACGGATTCT+CGG | 0.491856 | 4.4:-81783022 | None:intergenic |
| AGAACAGTCACAGCACGCTC+GGG | 0.499463 | 4.4:-81782080 | None:intergenic |
| CTGTGACTGTTCTTAGAGCT+TGG | 0.502191 | 4.4:+81782090 | MS.gene048089:CDS |
| ATGTGAATTTCTTCCACCAT+TGG | 0.504116 | 4.4:-81782892 | None:intergenic |
| TTGGAAGAGATGTGTGATGT+TGG | 0.509914 | 4.4:+81778747 | None:intergenic |
| GGCCTTGAAACCAATAATGA+AGG | 0.519264 | 4.4:+81783330 | MS.gene048089:CDS |
| AACAGGTTTATAAGCGGTAC+AGG | 0.526188 | 4.4:+81781766 | MS.gene048089:intron |
| ATAATGTTGGCTAAACAAAC+CGG | 0.528557 | 4.4:+81782699 | MS.gene048089:CDS |
| TTATTGCGACCATCACCAAA+TGG | 0.532053 | 4.4:-81778861 | None:intergenic |
| GGAATGAACATTGTTGGTAG+TGG | 0.533845 | 4.4:+81783174 | MS.gene048089:CDS |
| TTGAGCAGCAGCAACCTGTA+TGG | 0.537184 | 4.4:+81782039 | MS.gene048089:CDS |
| GGTGTTGGAATGAACATTGT+TGG | 0.538133 | 4.4:+81783168 | MS.gene048089:CDS |
| GAGGAGGACCTTACAGCCAT+AGG | 0.542996 | 4.4:+81782006 | MS.gene048089:CDS |
| TCTTCACTCAATCTTTCCAA+AGG | 0.544697 | 4.4:-81778834 | None:intergenic |
| AGATTTGGCAATAGTGAAAG+AGG | 0.547255 | 4.4:+81781987 | MS.gene048089:CDS |
| GGACCTTACAGCCATAGGTC+AGG | 0.547661 | 4.4:+81782011 | MS.gene048089:CDS |
| TTTGGAAGAGATGTAATTGG+TGG | 0.549107 | 4.4:+81783393 | MS.gene048089:CDS |
| TGATACAGACAAAATAATGT+TGG | 0.550720 | 4.4:+81782686 | MS.gene048089:CDS |
| AAGAACAGTCACAGCACGCT+CGG | 0.552428 | 4.4:-81782081 | None:intergenic |
| GAAGGTAATTATGTTATGAG+TGG | 0.565516 | 4.4:+81783348 | MS.gene048089:CDS |
| AACATACCAATTAGGAGTCA+AGG | 0.566002 | 4.4:+81783093 | MS.gene048089:CDS |
| AGGAGCTGCATTGTTGAGGC+CGG | 0.568570 | 4.4:-81781838 | None:intergenic |
| ATACTACCAACAGATGCAAT+CGG | 0.575247 | 4.4:+81781791 | MS.gene048089:CDS |
| CATAAGGAGCTGCATTGTTG+AGG | 0.575307 | 4.4:-81781842 | None:intergenic |
| GCTCAAGATAACCTGACCTA+TGG | 0.580908 | 4.4:-81782022 | None:intergenic |
| TACCTGGCTACGCGATAGAC+CGG | 0.588694 | 4.4:-81782718 | None:intergenic |
| GAAACTAGAGAAGTATCTGA+AGG | 0.590625 | 4.4:-81783000 | None:intergenic |
| AACTTATCTGTCGATGTAGA+CGG | 0.592212 | 4.4:-81783030 | None:intergenic |
| GAAGAAGATCCATTTGGTGA+TGG | 0.601601 | 4.4:+81778852 | MS.gene048089:CDS |
| AGTAAGGCTTTGGAAACCAA+TGG | 0.617622 | 4.4:+81782876 | MS.gene048089:CDS |
| TTACGACCGATTGCATCTGT+TGG | 0.619652 | 4.4:-81781797 | None:intergenic |
| AGTAATGTGTCATTGACACT+AGG | 0.633869 | 4.4:+81783237 | MS.gene048089:CDS |
| GAACAGTCACAGCACGCTCG+GGG | 0.634057 | 4.4:-81782079 | None:intergenic |
| ATTGTTGACTATGCTTGATG+AGG | 0.645801 | 4.4:+81778890 | MS.gene048089:CDS |
| CCTGTATGGCGACCTCAAAG+AGG | 0.654482 | 4.4:+81782053 | MS.gene048089:CDS |
| TTACTCAACAGGTTTATAAG+CGG | 0.661325 | 4.4:+81781760 | MS.gene048089:intron |
| AAATTCACATGTTAGAAACA+AGG | 0.662688 | 4.4:+81782905 | MS.gene048089:CDS |
| AAGGCTTTGGAAACCAATGG+TGG | 0.671971 | 4.4:+81782879 | MS.gene048089:CDS |
| TTTGGCAATAGTGAAAGAGG+AGG | 0.703422 | 4.4:+81781990 | MS.gene048089:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAAACTTTAAATT+AGG | - | chr4.4:81779989-81780008 | None:intergenic | 10.0% |
| !! | AAAACAAAAACTTTAAATTA+GGG | - | chr4.4:81779988-81780007 | None:intergenic | 10.0% |
| !!! | TAAGAAAAAATCTATTTTTT+AGG | + | chr4.4:81780287-81780306 | MS.gene048089:intron | 10.0% |
| !!! | TATATTTTTAGATGATAATA+AGG | + | chr4.4:81779747-81779766 | MS.gene048089:intron | 10.0% |
| !!! | TTGTAATTTTAATACATTAA+GGG | - | chr4.4:81782287-81782306 | None:intergenic | 10.0% |
| !!! | TTTCCATTTTTATTTTTTTT+TGG | + | chr4.4:81779142-81779161 | MS.gene048089:intron | 10.0% |
| !!! | TTTGTAATTTTAATACATTA+AGG | - | chr4.4:81782288-81782307 | None:intergenic | 10.0% |
| !! | ACAAAATTTCACTTATAATT+AGG | - | chr4.4:81779896-81779915 | None:intergenic | 15.0% |
| !! | ACTAACAAAAAATATAATTC+AGG | - | chr4.4:81782317-81782336 | None:intergenic | 15.0% |
| !! | AGAAAAATAAATAACTTCAT+TGG | + | chr4.4:81780064-81780083 | MS.gene048089:intron | 15.0% |
| !! | ATAGATTTATAGATTTATGT+TGG | - | chr4.4:81781480-81781499 | None:intergenic | 15.0% |
| !! | CTAACAAAAAATATAATTCA+GGG | - | chr4.4:81782316-81782335 | None:intergenic | 15.0% |
| !! | TCTCCAAAAAAAAATAAAAA+TGG | - | chr4.4:81779148-81779167 | None:intergenic | 15.0% |
| !! | TGTCTTAATTTCTAATTAAT+AGG | + | chr4.4:81779412-81779431 | MS.gene048089:intron | 15.0% |
| !! | TTAAAGTTATACTATATTGA+AGG | + | chr4.4:81779647-81779666 | MS.gene048089:intron | 15.0% |
| !! | TTTCTAATTAATAGGTTAAT+AGG | + | chr4.4:81779420-81779439 | MS.gene048089:intron | 15.0% |
| !!! | AATAATTAGATTCTGAAATA+TGG | - | chr4.4:81780937-81780956 | None:intergenic | 15.0% |
| !!! | ATAATTAGATTCTGAAATAT+GGG | - | chr4.4:81780936-81780955 | None:intergenic | 15.0% |
| !!! | ATTATAAGTGAAATTTTGTT+TGG | + | chr4.4:81779897-81779916 | MS.gene048089:intron | 15.0% |
| !!! | GAAATTAATGATTTAGAATA+TGG | - | chr4.4:81782768-81782787 | None:intergenic | 15.0% |
| !!! | TAATATTTCACAATTTTCTA+TGG | + | chr4.4:81780010-81780029 | MS.gene048089:intron | 15.0% |
| !!! | TTAAGTATTCTTTTAAAAAG+TGG | + | chr4.4:81779281-81779300 | MS.gene048089:intron | 15.0% |
| !!! | TTATAAGTGAAATTTTGTTT+GGG | + | chr4.4:81779898-81779917 | MS.gene048089:intron | 15.0% |
| !! | AACAAAATGAAGAAAATTGT+AGG | + | chr4.4:81782947-81782966 | MS.gene048089:CDS | 20.0% |
| !! | AACATAATTACCTTCATTAT+TGG | - | chr4.4:81783343-81783362 | None:intergenic | 20.0% |
| !! | AATAAACTATCAAAATGCTT+AGG | + | chr4.4:81780745-81780764 | MS.gene048089:intron | 20.0% |
| !! | AATAAGAACAATCTGAAAAA+CGG | - | chr4.4:81780795-81780814 | None:intergenic | 20.0% |
| !! | AGTTTATCTAGAAAAAGAAA+TGG | + | chr4.4:81780665-81780684 | MS.gene048089:intron | 20.0% |
| !! | ATAAACTATCAAAATGCTTA+GGG | + | chr4.4:81780746-81780765 | MS.gene048089:intron | 20.0% |
| !! | ATAAATGAAATACACATTCT+CGG | + | chr4.4:81782420-81782439 | MS.gene048089:intron | 20.0% |
| !! | ATAAGTAAGTTTGCATAAAA+AGG | + | chr4.4:81781235-81781254 | MS.gene048089:intron | 20.0% |
| !! | ATAGATATTGTTATATTGGT+AGG | - | chr4.4:81782818-81782837 | None:intergenic | 20.0% |
| !! | ATCTTAATTTATGTGCATTA+AGG | + | chr4.4:81779386-81779405 | MS.gene048089:intron | 20.0% |
| !! | ATTCTAAATACTCTCAATTT+GGG | + | chr4.4:81779196-81779215 | MS.gene048089:intron | 20.0% |
| !! | CAAGATAGATATTGTTATAT+TGG | - | chr4.4:81782822-81782841 | None:intergenic | 20.0% |
| !! | CAATACTCTTTCTTATATTT+GGG | + | chr4.4:81780424-81780443 | MS.gene048089:intron | 20.0% |
| !! | GTTTATCTAGAAAAAGAAAT+GGG | + | chr4.4:81780666-81780685 | MS.gene048089:intron | 20.0% |
| !! | TACTAAATTGACTAACAAAA+TGG | + | chr4.4:81782346-81782365 | MS.gene048089:intron | 20.0% |
| !! | TAGAATCATAAATAATCTTG+TGG | + | chr4.4:81780512-81780531 | MS.gene048089:intron | 20.0% |
| !! | TATGTTAGGAATTTCATTTA+CGG | - | chr4.4:81783079-81783098 | None:intergenic | 20.0% |
| !! | TATTCTAAATACTCTCAATT+TGG | + | chr4.4:81779195-81779214 | MS.gene048089:intron | 20.0% |
| !! | TATTTAGACCATTAACAAAT+TGG | - | chr4.4:81780118-81780137 | None:intergenic | 20.0% |
| !! | TCACTTAAAAAAGAAATCTA+TGG | - | chr4.4:81779596-81779615 | None:intergenic | 20.0% |
| !! | TTAAAAAAGAAATCTATGGT+TGG | - | chr4.4:81779592-81779611 | None:intergenic | 20.0% |
| !! | TTCTTATAATTATGACTAGA+GGG | - | chr4.4:81780273-81780292 | None:intergenic | 20.0% |
| !! | TTGAAGTGGTTATATAATTA+GGG | - | chr4.4:81781352-81781371 | None:intergenic | 20.0% |
| !! | TTTCTTATAATTATGACTAG+AGG | - | chr4.4:81780274-81780293 | None:intergenic | 20.0% |
| !!! | ACCATTTTAATTCTTAAACA+AGG | - | chr4.4:81781443-81781462 | None:intergenic | 20.0% |
| !!! | ATTATTTTTGTCATTTTGTG+TGG | + | chr4.4:81779064-81779083 | MS.gene048089:intron | 20.0% |
| !!! | ATTTTCTATGGAAGTATATT+TGG | + | chr4.4:81780022-81780041 | MS.gene048089:intron | 20.0% |
| !!! | GCTTTTTAAGAAAAGTTAAT+GGG | + | chr4.4:81779526-81779545 | MS.gene048089:intron | 20.0% |
| !!! | TAAAATGGAATTTCTGATTT+TGG | - | chr4.4:81781053-81781072 | None:intergenic | 20.0% |
| !!! | TCCTTGTTTAAGAATTAAAA+TGG | + | chr4.4:81781439-81781458 | MS.gene048089:intron | 20.0% |
| !!! | TTTATAGACCAATTTGTTAA+TGG | + | chr4.4:81780107-81780126 | MS.gene048089:intron | 20.0% |
| !!! | TTTTATCTATTGATCTTGAT+GGG | + | chr4.4:81780704-81780723 | MS.gene048089:intron | 20.0% |
| ! | AAATATGGGTTTGAAAAGAT+AGG | - | chr4.4:81780922-81780941 | None:intergenic | 25.0% |
| ! | AAATTCACATGTTAGAAACA+AGG | + | chr4.4:81782905-81782924 | MS.gene048089:CDS | 25.0% |
| ! | AAATTCCTAACATACCAATT+AGG | + | chr4.4:81783085-81783104 | MS.gene048089:CDS | 25.0% |
| ! | AGGTGTATACCAATAATTTA+AGG | - | chr4.4:81779868-81779887 | None:intergenic | 25.0% |
| ! | ATTCTTGCATTATATTGTGA+TGG | + | chr4.4:81779481-81779500 | MS.gene048089:intron | 25.0% |
| ! | CTAATTATATAACCACTTCA+AGG | + | chr4.4:81781351-81781370 | MS.gene048089:intron | 25.0% |
| ! | CTTGAAGTGGTTATATAATT+AGG | - | chr4.4:81781353-81781372 | None:intergenic | 25.0% |
| ! | CTTTATCAAAATCATGGAAT+TGG | + | chr4.4:81783261-81783280 | MS.gene048089:CDS | 25.0% |
| ! | GCAATACTCTTTCTTATATT+TGG | + | chr4.4:81780423-81780442 | MS.gene048089:intron | 25.0% |
| ! | GGTGTATACCAATAATTTAA+GGG | - | chr4.4:81779867-81779886 | None:intergenic | 25.0% |
| ! | GTGTATGTGATTCATAATTT+AGG | - | chr4.4:81781400-81781419 | None:intergenic | 25.0% |
| ! | GTTCTATACTTATTATCTGT+CGG | + | chr4.4:81781642-81781661 | MS.gene048089:intron | 25.0% |
| ! | TAAATGAAATACACATTCTC+GGG | + | chr4.4:81782421-81782440 | MS.gene048089:intron | 25.0% |
| ! | TATCACGATTATTGTCATAT+TGG | - | chr4.4:81780602-81780621 | None:intergenic | 25.0% |
| ! | TCTTGTGGTACATATTTAAT+TGG | + | chr4.4:81780527-81780546 | MS.gene048089:intron | 25.0% |
| ! | TGATACAGACAAAATAATGT+TGG | + | chr4.4:81782686-81782705 | MS.gene048089:CDS | 25.0% |
| ! | TGGTAGGATTATAAATTCAT+TGG | - | chr4.4:81782802-81782821 | None:intergenic | 25.0% |
| ! | TTAGATGATAATAAGGTGAT+TGG | + | chr4.4:81779754-81779773 | MS.gene048089:intron | 25.0% |
| ! | TTTAAGAAAAGTTAATGGGA+AGG | + | chr4.4:81779530-81779549 | MS.gene048089:intron | 25.0% |
| ! | TTTGTTTGGGTCTATTTATA+AGG | + | chr4.4:81779911-81779930 | MS.gene048089:intron | 25.0% |
| !! | CTATTTCTCCCTTAAATTAT+TGG | + | chr4.4:81779856-81779875 | MS.gene048089:intron | 25.0% |
| !! | CTTTTATCTATTGATCTTGA+TGG | + | chr4.4:81780703-81780722 | MS.gene048089:intron | 25.0% |
| !! | GAAGTATAAATCTTTTCCAA+TGG | - | chr4.4:81779676-81779695 | None:intergenic | 25.0% |
| !! | TTCAAAAGCTTTTACATTTG+TGG | + | chr4.4:81782620-81782639 | MS.gene048089:intron | 25.0% |
| !!! | AGGTTAATAGGTTAGTTTTA+TGG | + | chr4.4:81779432-81779451 | MS.gene048089:intron | 25.0% |
| !!! | ATTATTTTGTCTGTATCAGT+AGG | - | chr4.4:81782684-81782703 | None:intergenic | 25.0% |
| !!! | CTGTTTTTTTCTTCTTTTGT+CGG | + | chr4.4:81779013-81779032 | MS.gene048089:intron | 25.0% |
| !!! | GGCTTTTTAAGAAAAGTTAA+TGG | + | chr4.4:81779525-81779544 | MS.gene048089:intron | 25.0% |
| !!! | GTATTCTTTTAAAAAGTGGA+AGG | + | chr4.4:81779285-81779304 | MS.gene048089:intron | 25.0% |
| !!! | GTTCTATATTTTTACTCAAC+AGG | + | chr4.4:81781749-81781768 | MS.gene048089:intron | 25.0% |
| !!! | TCATTTTGTTGTGAATCTTT+TGG | - | chr4.4:81782937-81782956 | None:intergenic | 25.0% |
| !!! | TTTTAGTTCTTGAATGTGTA+CGG | + | chr4.4:81782245-81782264 | MS.gene048089:intron | 25.0% |
| AAAAATTGAAACATCTGTGC+TGG | + | chr4.4:81782200-81782219 | MS.gene048089:intron | 30.0% | |
| AAAATTGAAACATCTGTGCT+GGG | + | chr4.4:81782201-81782220 | MS.gene048089:intron | 30.0% | |
| AAGCAATAATTTCATCTTGC+CGG | - | chr4.4:81779950-81779969 | None:intergenic | 30.0% | |
| AATGAACGTTATGTATGTCT+TGG | + | chr4.4:81780635-81780654 | MS.gene048089:intron | 30.0% | |
| AATTATTGGTATACACCTCA+TGG | + | chr4.4:81779870-81779889 | MS.gene048089:intron | 30.0% | |
| ACATCATTTGAGTATGTTTC+CGG | + | chr4.4:81781819-81781838 | MS.gene048089:CDS | 30.0% | |
| ACTAACAAAATGGATATTCG+AGG | + | chr4.4:81782356-81782375 | MS.gene048089:intron | 30.0% | |
| ACTATATTGAAGGAATCCAT+TGG | + | chr4.4:81779657-81779676 | MS.gene048089:intron | 30.0% | |
| ATAAGGAAAAAAGTTGCAAC+CGG | + | chr4.4:81779928-81779947 | MS.gene048089:intron | 30.0% | |
| CAAATGTTTCATGACTTTGT+AGG | + | chr4.4:81783417-81783436 | MS.gene048089:CDS | 30.0% | |
| CAATATCTATCTTGTGTATC+AGG | + | chr4.4:81782828-81782847 | MS.gene048089:intron | 30.0% | |
| CATATCAATGAAACAGCAAA+AGG | - | chr4.4:81781594-81781613 | None:intergenic | 30.0% | |
| CCAACTACAGTTCAATAATA+AGG | + | chr4.4:81781926-81781945 | MS.gene048089:CDS | 30.0% | |
| CCTTATTATTGAACTGTAGT+TGG | - | chr4.4:81781929-81781948 | None:intergenic | 30.0% | |
| CTACAAAGTCATGAAACATT+TGG | - | chr4.4:81783419-81783438 | None:intergenic | 30.0% | |
| CTAGGACTTTATCAAAATCA+TGG | + | chr4.4:81783255-81783274 | MS.gene048089:CDS | 30.0% | |
| GAAACATAGAATTGCACTTA+CGG | - | chr4.4:81782137-81782156 | None:intergenic | 30.0% | |
| GAAGGTAATTATGTTATGAG+TGG | + | chr4.4:81783348-81783367 | MS.gene048089:CDS | 30.0% | |
| GTAAAGCCAATCTTACATAA+AGG | - | chr4.4:81779780-81779799 | None:intergenic | 30.0% | |
| TAGAACAAATGTCACAATCA+TGG | - | chr4.4:81781735-81781754 | None:intergenic | 30.0% | |
| TATCAAACATTGTCAACTGA+AGG | - | chr4.4:81781707-81781726 | None:intergenic | 30.0% | |
| TGTGGTACATATTTAATTGG+TGG | + | chr4.4:81780530-81780549 | MS.gene048089:intron | 30.0% | |
| TTACTCAACAGGTTTATAAG+CGG | + | chr4.4:81781760-81781779 | MS.gene048089:intron | 30.0% | |
| TTATACTTTAGTCAGGATCA+CGG | + | chr4.4:81782526-81782545 | MS.gene048089:intron | 30.0% | |
| TTGATTGCATAGTCATTTCT+TGG | - | chr4.4:81781541-81781560 | None:intergenic | 30.0% | |
| ! | ACATTTTAGATGCTTGAAGA+AGG | + | chr4.4:81781893-81781912 | MS.gene048089:CDS | 30.0% |
| ! | AGCACAGATGTTTCAATTTT+TGG | - | chr4.4:81782201-81782220 | None:intergenic | 30.0% |
| ! | ATAATGTTGGCTAAACAAAC+CGG | + | chr4.4:81782699-81782718 | MS.gene048089:CDS | 30.0% |
| ! | CTTCAAGCATCTAAAATGTT+TGG | - | chr4.4:81781892-81781911 | None:intergenic | 30.0% |
| ! | GAATCACAAAATAGGCATTT+TGG | + | chr4.4:81783375-81783394 | MS.gene048089:CDS | 30.0% |
| ! | TTCTTATATTTGGGACAAGA+AGG | + | chr4.4:81780433-81780452 | MS.gene048089:intron | 30.0% |
| ! | TTGCATTATATTGTGATGGA+TGG | + | chr4.4:81779485-81779504 | MS.gene048089:intron | 30.0% |
| ! | TTTTTGCTTATAGTTGTGAC+CGG | + | chr4.4:81780385-81780404 | MS.gene048089:intron | 30.0% |
| !! | CATTTTGGAAGAGATGTAAT+TGG | + | chr4.4:81783390-81783409 | MS.gene048089:CDS | 30.0% |
| !! | TAAGATTGGCTTTACTTGTT+TGG | + | chr4.4:81779785-81779804 | MS.gene048089:intron | 30.0% |
| !! | TACCTTCATTATTGGTTTCA+AGG | - | chr4.4:81783335-81783354 | None:intergenic | 30.0% |
| !!! | AGGTTTATTTTGTTAGTGGT+AGG | + | chr4.4:81779305-81779324 | MS.gene048089:intron | 30.0% |
| !!! | CTAGTTTAGCTTTTGTTTCA+TGG | + | chr4.4:81779358-81779377 | MS.gene048089:intron | 30.0% |
| !!! | GTGGTTTTGAATCACAAAAT+AGG | + | chr4.4:81783367-81783386 | MS.gene048089:CDS | 30.0% |
| !!! | TGGAAGGTTTATTTTGTTAG+TGG | + | chr4.4:81779301-81779320 | MS.gene048089:intron | 30.0% |
| !!! | TTTTTGTCATTTTGTGTGGA+TGG | + | chr4.4:81779068-81779087 | MS.gene048089:intron | 30.0% |
| AACATACCAATTAGGAGTCA+AGG | + | chr4.4:81783093-81783112 | MS.gene048089:CDS | 35.0% | |
| AACTTATCTGTCGATGTAGA+CGG | - | chr4.4:81783033-81783052 | None:intergenic | 35.0% | |
| AAGGAAGAATCTCCAAGATT+TGG | + | chr4.4:81781972-81781991 | MS.gene048089:CDS | 35.0% | |
| AATGGGAAGGAATATATGCA+TGG | + | chr4.4:81779543-81779562 | MS.gene048089:intron | 35.0% | |
| ACTATGTCACCCAATTTGTA+GGG | + | chr4.4:81779615-81779634 | MS.gene048089:intron | 35.0% | |
| AGATTTGGCAATAGTGAAAG+AGG | + | chr4.4:81781987-81782006 | MS.gene048089:CDS | 35.0% | |
| AGCAAATCATCCCTACAAAT+TGG | - | chr4.4:81779628-81779647 | None:intergenic | 35.0% | |
| AGGAATATATGCATGGAGAT+TGG | + | chr4.4:81779550-81779569 | MS.gene048089:intron | 35.0% | |
| AGGCTAACATAAGGTTTGAT+TGG | + | chr4.4:81779325-81779344 | MS.gene048089:intron | 35.0% | |
| ATACTACCAACAGATGCAAT+CGG | + | chr4.4:81781791-81781810 | MS.gene048089:CDS | 35.0% | |
| ATGTGAATTTCTTCCACCAT+TGG | - | chr4.4:81782895-81782914 | None:intergenic | 35.0% | |
| ATGTGTGATGTTGGAAATCT+TGG | + | chr4.4:81778756-81778775 | MS.gene048089:CDS | 35.0% | |
| ATTAACACAAGTTTCACACG+AGG | - | chr4.4:81781085-81781104 | None:intergenic | 35.0% | |
| ATTCCTTAACCAATGCTCTT+AGG | + | chr4.4:81781310-81781329 | MS.gene048089:intron | 35.0% | |
| CAGTTGCATTACATCTATCA+AGG | - | chr4.4:81782569-81782588 | None:intergenic | 35.0% | |
| CCTGACTAAAGTATAAAACG+AGG | - | chr4.4:81782522-81782541 | None:intergenic | 35.0% | |
| CTTTCACTATTGCCAAATCT+TGG | - | chr4.4:81781987-81782006 | None:intergenic | 35.0% | |
| GCAAATCATCCCTACAAATT+GGG | - | chr4.4:81779627-81779646 | None:intergenic | 35.0% | |
| GGTTCATAAATGCAAGAGTA+AGG | + | chr4.4:81782860-81782879 | MS.gene048089:CDS | 35.0% | |
| TAAAATGGTGCAAGTCATGA+CGG | + | chr4.4:81781454-81781473 | MS.gene048089:intron | 35.0% | |
| TAAATGCAAGAGTAAGGCTT+TGG | + | chr4.4:81782866-81782885 | MS.gene048089:CDS | 35.0% | |
| TACACATCATTCACTTGTGA+AGG | + | chr4.4:81781415-81781434 | MS.gene048089:intron | 35.0% | |
| TCACTTATAATTAGGCCATG+AGG | - | chr4.4:81779888-81779907 | None:intergenic | 35.0% | |
| TCTTCACTCAATCTTTCCAA+AGG | - | chr4.4:81778837-81778856 | None:intergenic | 35.0% | |
| TGACTCCTAATTGGTATGTT+AGG | - | chr4.4:81783093-81783112 | None:intergenic | 35.0% | |
| TGGCATATCAAATTCGATCA+AGG | - | chr4.4:81782181-81782200 | None:intergenic | 35.0% | |
| TTAACACAAGTTTCACACGA+GGG | - | chr4.4:81781084-81781103 | None:intergenic | 35.0% | |
| TTGAGTGAAGAAGATCCATT+TGG | + | chr4.4:81778846-81778865 | MS.gene048089:CDS | 35.0% | |
| TTGTAGAAATGTACTGCAGA+AGG | + | chr4.4:81780958-81780977 | MS.gene048089:intron | 35.0% | |
| TTGTGTATCAGGTGTCAAAT+TGG | + | chr4.4:81782839-81782858 | MS.gene048089:intron | 35.0% | |
| TTTATCGCCAAACTTGCATA+AGG | - | chr4.4:81781861-81781880 | None:intergenic | 35.0% | |
| TTTGGAAGAGATGTAATTGG+TGG | + | chr4.4:81783393-81783412 | MS.gene048089:CDS | 35.0% | |
| ! | AACAAACGTTTTCCTTGAAG+TGG | - | chr4.4:81781366-81781385 | None:intergenic | 35.0% |
| ! | AGTAATGTGTCATTGACACT+AGG | + | chr4.4:81783237-81783256 | MS.gene048089:CDS | 35.0% |
| ! | AGTCTACCTTTTCAACATGT+AGG | + | chr4.4:81783147-81783166 | MS.gene048089:CDS | 35.0% |
| ! | ATGCAGCATGGACTATAATA+TGG | - | chr4.4:81780878-81780897 | None:intergenic | 35.0% |
| ! | ATTGTTGACTATGCTTGATG+AGG | + | chr4.4:81778890-81778909 | MS.gene048089:CDS | 35.0% |
| ! | CCTCGTTTTATACTTTAGTC+AGG | + | chr4.4:81782519-81782538 | MS.gene048089:intron | 35.0% |
| !! | GAAACTAGAGAAGTATCTGA+AGG | - | chr4.4:81783003-81783022 | None:intergenic | 35.0% |
| !! | GATTGGCCTTTATGTAAGAT+TGG | + | chr4.4:81779771-81779790 | MS.gene048089:intron | 35.0% |
| !! | TACCTTGAAGGAACTTGTTA+AGG | - | chr4.4:81780248-81780267 | None:intergenic | 35.0% |
| !! | TGCTGATTCTTCTTTGATGA+TGG | + | chr4.4:81778806-81778825 | MS.gene048089:CDS | 35.0% |
| !! | TTTGATGATGGAATCTCCTT+TGG | + | chr4.4:81778818-81778837 | MS.gene048089:CDS | 35.0% |
| !!! | GAACTTGTTAAGGTGCTTTT+GGG | - | chr4.4:81780238-81780257 | None:intergenic | 35.0% |
| AACAGGTTTATAAGCGGTAC+AGG | + | chr4.4:81781766-81781785 | MS.gene048089:intron | 40.0% | |
| AACCAATGCTCTTAGGACAT+TGG | + | chr4.4:81781317-81781336 | MS.gene048089:intron | 40.0% | |
| AAGTTTCACACGAGGGTTTA+AGG | - | chr4.4:81781077-81781096 | None:intergenic | 40.0% | |
| AGAACATAGTTCGTCTCAGA+GGG | - | chr4.4:81781627-81781646 | None:intergenic | 40.0% | |
| ATAGGTTCCAACCGAAGAAA+AGG | - | chr4.4:81780904-81780923 | None:intergenic | 40.0% | |
| ATCTTGGAGATTCTTCCTTC+CGG | - | chr4.4:81781971-81781990 | None:intergenic | 40.0% | |
| CACCTTAACAAGTTCCTTCA+AGG | + | chr4.4:81780243-81780262 | MS.gene048089:intron | 40.0% | |
| CCAACACCTACATGTTGAAA+AGG | - | chr4.4:81783156-81783175 | None:intergenic | 40.0% | |
| CTAACTATCCCGTGATCTTA+GGG | + | chr4.4:81781193-81781212 | MS.gene048089:intron | 40.0% | |
| GACTATGTCACCCAATTTGT+AGG | + | chr4.4:81779614-81779633 | MS.gene048089:intron | 40.0% | |
| GGCCTTGAAACCAATAATGA+AGG | + | chr4.4:81783330-81783349 | MS.gene048089:CDS | 40.0% | |
| GTTAGTGGTAGGCTAACATA+AGG | + | chr4.4:81779316-81779335 | MS.gene048089:intron | 40.0% | |
| TAACCAATGCCCTAAGATCA+CGG | - | chr4.4:81781205-81781224 | None:intergenic | 40.0% | |
| TACTTATTATCTGTCGGTCC+TGG | + | chr4.4:81781648-81781667 | MS.gene048089:intron | 40.0% | |
| TAGAACATAGTTCGTCTCAG+AGG | - | chr4.4:81781628-81781647 | None:intergenic | 40.0% | |
| TGTTGTCCTTGACTCCTAAT+TGG | - | chr4.4:81783102-81783121 | None:intergenic | 40.0% | |
| TTATTGCGACCATCACCAAA+TGG | - | chr4.4:81778864-81778883 | None:intergenic | 40.0% | |
| TTTGGCAATAGTGAAAGAGG+AGG | + | chr4.4:81781990-81782009 | MS.gene048089:CDS | 40.0% | |
| ! | AACCAATGTCCTAAGAGCAT+TGG | - | chr4.4:81781322-81781341 | None:intergenic | 40.0% |
| ! | ACGAGGGTTTAAGGCTAAAA+TGG | - | chr4.4:81781068-81781087 | None:intergenic | 40.0% |
| ! | CCTTTTCAACATGTAGGTGT+TGG | + | chr4.4:81783153-81783172 | MS.gene048089:CDS | 40.0% |
| ! | GAAGAAGATCCATTTGGTGA+TGG | + | chr4.4:81778852-81778871 | MS.gene048089:CDS | 40.0% |
| ! | GGAATGAACATTGTTGGTAG+TGG | + | chr4.4:81783174-81783193 | MS.gene048089:CDS | 40.0% |
| ! | GGTGTTGGAATGAACATTGT+TGG | + | chr4.4:81783168-81783187 | MS.gene048089:CDS | 40.0% |
| ! | GTTATGTATGTCTTGGCTTG+TGG | + | chr4.4:81780642-81780661 | MS.gene048089:intron | 40.0% |
| !! | AGTAAGGCTTTGGAAACCAA+TGG | + | chr4.4:81782876-81782895 | MS.gene048089:CDS | 40.0% |
| !! | GTTGGAAATCTTGGTGTTTG+TGG | + | chr4.4:81778765-81778784 | MS.gene048089:CDS | 40.0% |
| !! | GTTGGTAGTGGAAGCAATAA+TGG | + | chr4.4:81783186-81783205 | MS.gene048089:CDS | 40.0% |
| !! | TATATTGTGATGGATGGCCT+CGG | + | chr4.4:81779491-81779510 | MS.gene048089:intron | 40.0% |
| !! | TCTTGGTGTTTGTGGTGAAA+AGG | + | chr4.4:81778773-81778792 | MS.gene048089:CDS | 40.0% |
| !! | TGTCCTAAGAGCATTGGTTA+AGG | - | chr4.4:81781316-81781335 | None:intergenic | 40.0% |
| !!! | GGAACTTGTTAAGGTGCTTT+TGG | - | chr4.4:81780239-81780258 | None:intergenic | 40.0% |
| AAAGCCAATTGAGTTCACCG+AGG | - | chr4.4:81779511-81779530 | None:intergenic | 45.0% | |
| AACCAATGCCCTAAGATCAC+GGG | - | chr4.4:81781204-81781223 | None:intergenic | 45.0% | |
| AATCGTTGAGCTGCACTTAG+AGG | - | chr4.4:81783303-81783322 | None:intergenic | 45.0% | |
| AGTTCTTGAATGTGTACGGC+AGG | + | chr4.4:81782249-81782268 | MS.gene048089:intron | 45.0% | |
| ATCAGTAGGATAGCTGCACA+AGG | - | chr4.4:81782670-81782689 | None:intergenic | 45.0% | |
| CATAAGGAGCTGCATTGTTG+AGG | - | chr4.4:81781845-81781864 | None:intergenic | 45.0% | |
| CTAAGTGCAGCTCAACGATT+TGG | + | chr4.4:81783303-81783322 | MS.gene048089:CDS | 45.0% | |
| CTGTGACTGTTCTTAGAGCT+TGG | + | chr4.4:81782090-81782109 | MS.gene048089:CDS | 45.0% | |
| GAACATAGTTCGTCTCAGAG+GGG | - | chr4.4:81781626-81781645 | None:intergenic | 45.0% | |
| GACAATGCTCGACACATTCA+AGG | + | chr4.4:81782480-81782499 | MS.gene048089:intron | 45.0% | |
| GCTAACTATCCCGTGATCTT+AGG | + | chr4.4:81781192-81781211 | MS.gene048089:intron | 45.0% | |
| GCTCAAGATAACCTGACCTA+TGG | - | chr4.4:81782025-81782044 | None:intergenic | 45.0% | |
| TAACCTGACCTATGGCTGTA+AGG | - | chr4.4:81782017-81782036 | None:intergenic | 45.0% | |
| TGAGCTGCACTTAGAGGAAA+TGG | - | chr4.4:81783297-81783316 | None:intergenic | 45.0% | |
| TGCAGCTCCTTATGCAAGTT+TGG | + | chr4.4:81781851-81781870 | MS.gene048089:CDS | 45.0% | |
| TGCTTATAGTTGTGACCGGA+GGG | + | chr4.4:81780389-81780408 | MS.gene048089:intron | 45.0% | |
| TTACGACCGATTGCATCTGT+TGG | - | chr4.4:81781800-81781819 | None:intergenic | 45.0% | |
| TTGCTTATAGTTGTGACCGG+AGG | + | chr4.4:81780388-81780407 | MS.gene048089:intron | 45.0% | |
| ! | AAGAAAAGGCACATGCAGCA+TGG | - | chr4.4:81780890-81780909 | None:intergenic | 45.0% |
| ! | CGCATTTTCACACAAGCAAC+CGG | + | chr4.4:81781949-81781968 | MS.gene048089:CDS | 45.0% |
| ! | TGCTGCATGTGCCTTTTCTT+CGG | + | chr4.4:81780890-81780909 | MS.gene048089:intron | 45.0% |
| ! | TGTCGATGTAGACGGATTCT+CGG | - | chr4.4:81783025-81783044 | None:intergenic | 45.0% |
| ! | TGTTTGTGTCGGTGCTTCAT+AGG | + | chr4.4:81781671-81781690 | MS.gene048089:intron | 45.0% |
| ! | TTTTCACACAAGCAACCGGA+AGG | + | chr4.4:81781953-81781972 | MS.gene048089:CDS | 45.0% |
| !! | AAGGCTTTGGAAACCAATGG+TGG | + | chr4.4:81782879-81782898 | MS.gene048089:CDS | 45.0% |
| !!! | AGCTTTTGAAGTCACCACCA+CGG | - | chr4.4:81782610-81782629 | None:intergenic | 45.0% |
| !!! | TATTTTTTTTATTCTTTAAA+TGG | + | chr4.4:81780209-81780228 | MS.gene048089:intron | 5.0% |
| AAATGCAGTCGCAATGACCG+TGG | + | chr4.4:81782590-81782609 | MS.gene048089:intron | 50.0% | |
| AAGAACAGTCACAGCACGCT+CGG | - | chr4.4:81782084-81782103 | None:intergenic | 50.0% | |
| ATCCCGTGATCTTAGGGCAT+TGG | + | chr4.4:81781199-81781218 | MS.gene048089:intron | 50.0% | |
| ATGGCCTCGGTGAACTCAAT+TGG | + | chr4.4:81779504-81779523 | MS.gene048089:intron | 50.0% | |
| ATTTACGGCGCGCTTGTAAG+TGG | - | chr4.4:81783064-81783083 | None:intergenic | 50.0% | |
| GATCACGGTTGTGTTGCGTT+AGG | + | chr4.4:81782541-81782560 | MS.gene048089:intron | 50.0% | |
| TTGAGCAGCAGCAACCTGTA+TGG | + | chr4.4:81782039-81782058 | MS.gene048089:CDS | 50.0% | |
| TTGCTCACATGTACACCCTC+CGG | - | chr4.4:81780407-81780426 | None:intergenic | 50.0% | |
| ! | GACTAGAGGGTGTACCTTGA+AGG | - | chr4.4:81780260-81780279 | None:intergenic | 50.0% |
| ! | GCATGTGCCTTTTCTTCGGT+TGG | + | chr4.4:81780894-81780913 | MS.gene048089:intron | 50.0% |
| !! | GCAGCTCAACGATTTGGTCT+TGG | + | chr4.4:81783309-81783328 | MS.gene048089:CDS | 50.0% |
| AGAACAGTCACAGCACGCTC+GGG | - | chr4.4:81782083-81782102 | None:intergenic | 55.0% | |
| AGGAGCTGCATTGTTGAGGC+CGG | - | chr4.4:81781841-81781860 | None:intergenic | 55.0% | |
| CCTGTATGGCGACCTCAAAG+AGG | + | chr4.4:81782053-81782072 | MS.gene048089:CDS | 55.0% | |
| GAGGAGGACCTTACAGCCAT+AGG | + | chr4.4:81782006-81782025 | MS.gene048089:CDS | 55.0% | |
| GGACCTTACAGCCATAGGTC+AGG | + | chr4.4:81782011-81782030 | MS.gene048089:CDS | 55.0% | |
| GTCGGTCCTGGTGTTTGTGT+CGG | + | chr4.4:81781660-81781679 | MS.gene048089:intron | 55.0% | |
| TACCTGGCTACGCGATAGAC+CGG | - | chr4.4:81782721-81782740 | None:intergenic | 55.0% | |
| !! | CCTCTTTGAGGTCGCCATAC+AGG | - | chr4.4:81782056-81782075 | None:intergenic | 55.0% |
| !! | GAAGCACCGACACAAACACC+AGG | - | chr4.4:81781669-81781688 | None:intergenic | 55.0% |
| AACCGGTCTATCGCGTAGCC+AGG | + | chr4.4:81782716-81782735 | MS.gene048089:CDS | 60.0% | |
| GAACAGTCACAGCACGCTCG+GGG | - | chr4.4:81782082-81782101 | None:intergenic | 60.0% | |
| TGCAGTCGCAATGACCGTGG+TGG | + | chr4.4:81782593-81782612 | MS.gene048089:intron | 60.0% | |
| CGCTCGGGGAGTCCTCTTTG+AGG | - | chr4.4:81782068-81782087 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 81778756 | 81783443 | 81778756 | ID=MS.gene048089 |
| chr4.4 | mRNA | 81778756 | 81783443 | 81778756 | ID=MS.gene048089.t1;Parent=MS.gene048089 |
| chr4.4 | exon | 81778756 | 81778911 | 81778756 | ID=MS.gene048089.t1.exon1;Parent=MS.gene048089.t1 |
| chr4.4 | CDS | 81778756 | 81778911 | 81778756 | ID=cds.MS.gene048089.t1;Parent=MS.gene048089.t1 |
| chr4.4 | exon | 81781771 | 81782135 | 81781771 | ID=MS.gene048089.t1.exon2;Parent=MS.gene048089.t1 |
| chr4.4 | CDS | 81781771 | 81782135 | 81781771 | ID=cds.MS.gene048089.t1;Parent=MS.gene048089.t1 |
| chr4.4 | exon | 81782677 | 81782737 | 81782677 | ID=MS.gene048089.t1.exon3;Parent=MS.gene048089.t1 |
| chr4.4 | CDS | 81782677 | 81782737 | 81782677 | ID=cds.MS.gene048089.t1;Parent=MS.gene048089.t1 |
| chr4.4 | exon | 81782850 | 81783443 | 81782850 | ID=MS.gene048089.t1.exon4;Parent=MS.gene048089.t1 |
| chr4.4 | CDS | 81782850 | 81783443 | 81782850 | ID=cds.MS.gene048089.t1;Parent=MS.gene048089.t1 |
| Gene Sequence |
| Protein sequence |
