AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048251

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048251.t1 MTR_2g026725 94.474 380 19 1 1 380 1 378 0.0 649
MS.gene048251.t1 MTR_1g098900 39.228 311 147 8 78 352 238 542 5.15e-54 189
MS.gene048251.t1 MTR_1g098900 40.230 87 51 1 264 350 57 142 7.23e-15 76.6
MS.gene048251.t1 MTR_1g098870 37.692 260 120 6 107 352 229 460 8.58e-44 160
MS.gene048251.t1 MTR_1g098870 41.379 87 50 1 264 350 55 140 1.17e-14 75.9
MS.gene048251.t1 MTR_1g081180 31.173 324 186 7 85 374 210 530 6.43e-34 132
MS.gene048251.t1 MTR_6g035370 60.870 92 36 0 261 352 461 552 1.87e-33 132
MS.gene048251.t1 MTR_6g035370 37.634 93 57 1 264 356 55 146 3.54e-15 77.4
MS.gene048251.t1 MTR_7g114860 31.008 258 136 8 116 351 240 477 1.45e-28 116
MS.gene048251.t1 MTR_1g492790 26.400 250 133 8 93 333 277 484 4.94e-16 79.7
MS.gene048251.t1 MTR_1g492790 33.333 132 83 4 220 350 73 200 3.17e-13 71.2
MS.gene048251.t1 MTR_1g060990 37.755 98 59 2 255 351 122 218 4.91e-14 73.9
MS.gene048251.t1 MTR_5g026540 31.683 101 64 2 260 358 41 138 1.47e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048251.t1 AT5G47660 40.964 249 122 3 107 355 169 392 4.67e-51 176
MS.gene048251.t1 AT1G76890 37.838 259 131 5 107 355 252 490 1.68e-44 162
MS.gene048251.t1 AT1G76890 41.176 85 49 1 264 348 41 124 4.64e-14 73.9
MS.gene048251.t1 AT5G28300 34.981 263 139 8 116 351 299 556 5.42e-37 141
MS.gene048251.t1 AT1G76880 53.398 103 44 1 257 359 401 499 3.19e-31 125
MS.gene048251.t1 AT1G76880 40.230 87 51 1 264 350 61 146 1.40e-13 72.8
MS.gene048251.t1 AT1G33240 54.839 93 42 0 264 356 435 527 3.03e-29 119
MS.gene048251.t1 AT1G33240 39.080 87 52 1 264 350 62 147 1.41e-13 72.4
MS.gene048251.t1 AT1G33240 54.839 93 42 0 264 356 435 527 4.17e-29 119
MS.gene048251.t1 AT1G33240 39.080 87 52 1 264 350 62 147 1.41e-13 72.8
MS.gene048251.t1 AT1G33240 54.839 93 42 0 264 356 396 488 6.50e-29 118
MS.gene048251.t1 AT5G03680 28.889 315 177 10 77 369 255 544 1.25e-19 90.9
MS.gene048251.t1 AT5G03680 41.573 89 50 2 264 351 119 206 1.23e-14 75.9
MS.gene048251.t1 AT3G10000 34.646 127 78 3 226 351 54 176 6.48e-16 79.3
MS.gene048251.t1 AT3G10000 34.127 126 70 3 226 351 54 166 8.51e-14 73.2

Find 140 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGGTCCTCGACCTTTA+TGG 0.221031 2.3:+62559707 None:intergenic
ATCGCTGATTCAGAAATTAT+TGG 0.263866 2.3:-62558490 MS.gene048251:CDS
TTGCCCTTACTTTAACGAAT+TGG 0.310790 2.3:-62558016 MS.gene048251:CDS
TGGGATCAAAAGGATCAATA+TGG 0.335339 2.3:-62558176 MS.gene048251:CDS
TCGCTGATTCAGAAATTATT+GGG 0.338301 2.3:-62558489 MS.gene048251:CDS
GGAGATAGCTGGAGCATTGC+AGG 0.341688 2.3:-62558151 MS.gene048251:CDS
TTCCCTTATGGAAGCATTGT+TGG 0.348593 2.3:+62557939 None:intergenic
TTGGACAATCTGTATAGAAA+TGG 0.356199 2.3:-62557997 MS.gene048251:CDS
GGAACACAAGTTCGGTCATA+TGG 0.359379 2.3:-62558196 MS.gene048251:CDS
CGGCCCCACGTACTGAATTA+AGG 0.365409 2.3:+62558323 None:intergenic
CGAAGAAGTGCAAGGAGAAA+TGG 0.367920 2.3:-62558107 MS.gene048251:CDS
GGGAAACCAGGAGGAGGAGG+AGG 0.384212 2.3:+62559756 None:intergenic
CTTATTCCGCTTCCTTCTGC+TGG 0.387343 2.3:+62558444 None:intergenic
TTGTCCAATTCGTTAAAGTA+AGG 0.393734 2.3:+62558012 None:intergenic
TCTGCTAATACTAAAGAATT+CGG 0.401638 2.3:-62558747 MS.gene048251:CDS
GGTAGAGGGGTGTGGTGAGA+AGG 0.405204 2.3:+62559735 None:intergenic
CTGAATTAAGGCTAGGTTGT+TGG 0.408559 2.3:+62558335 None:intergenic
GTCGAGGACCCGTCTCGATC+CGG 0.413921 2.3:-62559699 MS.gene048251:CDS
CCCTCTACCACCTTCCATAA+AGG 0.418335 2.3:-62559721 MS.gene048251:CDS
GCGATCCAAGCAACAGTAGA+TGG 0.419502 2.3:-62558263 MS.gene048251:CDS
AGGTCGCCGGAGTCGGGAAA+TGG 0.420361 2.3:+62559858 None:intergenic
AGCTGGAGCATTGCAGGGCA+TGG 0.423836 2.3:-62558145 MS.gene048251:CDS
AAAACATCAATAAGTACTAT+AGG 0.424007 2.3:-62558083 MS.gene048251:CDS
GAAGGGAAACCAGGAGGAGG+AGG 0.425874 2.3:+62559753 None:intergenic
TTGTTATTGCTCACCTCAGC+CGG 0.426631 2.3:+62558303 None:intergenic
TCATCATTTCAGCTCGTCTT+CGG 0.431474 2.3:-62558787 MS.gene048251:intron
CGACCCCACGTTGTGGGTCA+AGG 0.431970 2.3:+62558377 None:intergenic
TGCTTCCATAAGGGAAGAAA+AGG 0.435272 2.3:-62557932 MS.gene048251:CDS
AATGGGTCCTTGGAGAGAAA+TGG 0.436187 2.3:-62557979 MS.gene048251:CDS
GGGGATTGTGGTGGTTGGAG+AGG 0.440819 2.3:+62559817 None:intergenic
AGAGCAGATGCATAAAGAAT+TGG 0.442580 2.3:-62558643 MS.gene048251:CDS
TTCGGTCATATGGGATCAAA+AGG 0.444670 2.3:-62558186 MS.gene048251:CDS
AGCATGGAAGCGCGAGGAGA+TGG 0.446602 2.3:-62558574 MS.gene048251:CDS
ATTTCTGAATCAGCGATATG+AGG 0.450156 2.3:+62558496 None:intergenic
TTGCAGCAAATTTGGTAAAG+AGG 0.450584 2.3:-62558680 MS.gene048251:CDS
ACCTTTATGGAAGGTGGTAG+AGG 0.453928 2.3:+62559720 None:intergenic
AGCGCTTGTACTTCCACATC+TGG 0.454518 2.3:+62558240 None:intergenic
AAGATAAGGTCGCCGGAGTC+GGG 0.457626 2.3:+62559852 None:intergenic
AGGAGGAGGGATGGACCTGA+TGG 0.458333 2.3:+62559782 None:intergenic
GAGAAAGAGTTCGAGAAAGC+TGG 0.464906 2.3:-62558709 MS.gene048251:CDS
ATACCAACAATGCTTCCATA+AGG 0.476408 2.3:-62557942 MS.gene048251:CDS
GACCCGTCTCGATCCGGGTC+GGG 0.479636 2.3:-62559693 MS.gene048251:CDS
TCTGGCCATCTACTGTTGCT+TGG 0.480798 2.3:+62558258 None:intergenic
TGGACAATCTGTATAGAAAT+GGG 0.482755 2.3:-62557996 MS.gene048251:CDS
GTGTGGTGAGAAGGGAAACC+AGG 0.486892 2.3:+62559744 None:intergenic
CCGCTTCCTTCTGCTGGTGG+AGG 0.487836 2.3:+62558450 None:intergenic
GTAGAGGGGTGTGGTGAGAA+GGG 0.489814 2.3:+62559736 None:intergenic
TCGAGGACCCGTCTCGATCC+GGG 0.493085 2.3:-62559698 MS.gene048251:CDS
GACCCGACCCGGATCGAGAC+GGG 0.496300 2.3:+62559691 None:intergenic
TCAGTACGTGGGGCCGGCTG+AGG 0.496634 2.3:-62558316 MS.gene048251:CDS
GAAGATAAGGTCGCCGGAGT+CGG 0.499156 2.3:+62559851 None:intergenic
TGGAAGGTGGTAGAGGGGTG+TGG 0.500655 2.3:+62559727 None:intergenic
CCACAACGTGGGGTCGGCTG+AGG 0.501288 2.3:-62558370 MS.gene048251:CDS
CTCAGCCGACCCCACGTTGT+GGG 0.501316 2.3:+62558371 None:intergenic
TCAATATGGGAGGAGATAGC+TGG 0.501950 2.3:-62558162 MS.gene048251:CDS
TGCATTTCCATTTCTCTCCA+AGG 0.502699 2.3:+62557972 None:intergenic
AAGAGAAGAGGATGAAGTTG+AGG 0.502881 2.3:-62558424 MS.gene048251:CDS
TCTGTATAGAAATGGGTCCT+TGG 0.503578 2.3:-62557989 MS.gene048251:CDS
TACCAACAATGCTTCCATAA+GGG 0.504424 2.3:-62557941 MS.gene048251:CDS
GATTGTGGTGGTTGGAGAGG+AGG 0.505297 2.3:+62559820 None:intergenic
GCAGATGCATAAAGAATTGG+TGG 0.506304 2.3:-62558640 MS.gene048251:CDS
TTGCCCCTTTGTCAAGAACC+CGG 0.506347 2.3:-62559660 MS.gene048251:CDS
TTACCCGGGTTCTTGACAAA+GGG 0.507083 2.3:+62559656 None:intergenic
GGAGGAGGGATGGACCTGAT+GGG 0.508730 2.3:+62559783 None:intergenic
GGAGGCCGGCGGCGAAGATA+AGG 0.508923 2.3:+62559838 None:intergenic
ATTCCGCTTCCTTCTGCTGG+TGG 0.513116 2.3:+62558447 None:intergenic
GTGGTGGTTGGAGAGGAGGC+CGG 0.515979 2.3:+62559824 None:intergenic
CAGTTGGGAGCGGCAAGAAA+CGG 0.517486 2.3:-62558056 MS.gene048251:CDS
GGATAAAGAGAGAAGAAGCA+TGG 0.520205 2.3:-62558590 MS.gene048251:CDS
ACCGCATTGGAACACAAGTT+CGG 0.524498 2.3:-62558204 MS.gene048251:CDS
GAAGAAGTGCAAGGAGAAAT+GGG 0.526951 2.3:-62558106 MS.gene048251:CDS
AGTACTATAGGAGGACAGTT+GGG 0.527630 2.3:-62558071 MS.gene048251:CDS
AATGATTGAGAGGATGGAAA+AGG 0.532492 2.3:-62558616 MS.gene048251:CDS
CCCACGTTGTGGGTCAAGGG+TGG 0.532882 2.3:+62558381 None:intergenic
CATAAGGGAAGAAAAGGAGC+AGG 0.532990 2.3:-62557926 MS.gene048251:CDS
CCTCAGCCGACCCCACGTTG+TGG 0.533841 2.3:+62558370 None:intergenic
GGTGGAAATGATTGAGAGGA+TGG 0.536865 2.3:-62558622 MS.gene048251:CDS
GCTGGAGCATTGCAGGGCAT+GGG 0.538046 2.3:-62558144 MS.gene048251:CDS
CAGCTCGTCTTCGGATGACG+TGG 0.539019 2.3:-62558778 MS.gene048251:CDS
CCTTTATGGAAGGTGGTAGA+GGG 0.540722 2.3:+62559721 None:intergenic
GGGATCAAAAGGATCAATAT+GGG 0.541820 2.3:-62558175 MS.gene048251:CDS
TGTCCAATTCGTTAAAGTAA+GGG 0.542164 2.3:+62558013 None:intergenic
CTTAATTCAGTACGTGGGGC+CGG 0.542332 2.3:-62558322 MS.gene048251:CDS
GAGGAGGGATGGACCTGATG+GGG 0.543104 2.3:+62559784 None:intergenic
GAACACAAGTTCGGTCATAT+GGG 0.545310 2.3:-62558195 MS.gene048251:CDS
GGAGATGGAGAGAATTAAGC+AGG 0.547111 2.3:-62558559 MS.gene048251:CDS
GTTGCTCCATTTCCCGACTC+CGG 0.549274 2.3:-62559864 MS.gene048251:CDS
GAGGAGGTTCATGCTGTCCA+TGG 0.550709 2.3:+62559899 None:intergenic
CCACGTTGTGGGTCAAGGGT+GGG 0.550717 2.3:+62558382 None:intergenic
GACCCCACGTTGTGGGTCAA+GGG 0.551673 2.3:+62558378 None:intergenic
TTTCTGAATCAGCGATATGA+GGG 0.558003 2.3:+62558497 None:intergenic
AAGTACTATAGGAGGACAGT+TGG 0.558326 2.3:-62558072 MS.gene048251:CDS
CATAGCAGTAAGAACCGCAT+TGG 0.560429 2.3:-62558217 MS.gene048251:CDS
CCTCCACCAGCAGAAGGAAG+CGG 0.560638 2.3:-62558450 MS.gene048251:CDS
GGACCCGTCTCGATCCGGGT+CGG 0.561874 2.3:-62559694 MS.gene048251:CDS
TGAGAAGGGAAACCAGGAGG+AGG 0.562570 2.3:+62559750 None:intergenic
CAAAGAAGAATGACCCGACC+CGG 0.563112 2.3:+62559680 None:intergenic
CTTGACCCACAACGTGGGGT+CGG 0.569379 2.3:-62558376 MS.gene048251:CDS
GGCGACCTTATCTTCGCCGC+CGG 0.577427 2.3:-62559843 MS.gene048251:CDS
CTTACCCGGGTTCTTGACAA+AGG 0.581461 2.3:+62559655 None:intergenic
TCCTCGACCTTTATGGAAGG+TGG 0.582785 2.3:+62559714 None:intergenic
TGCCCCTTTGTCAAGAACCC+GGG 0.588206 2.3:-62559659 MS.gene048251:intron
AGCTCGTCTTCGGATGACGT+GGG 0.593056 2.3:-62558777 MS.gene048251:CDS
CAGATTCCTCCACCAGCAGA+AGG 0.594230 2.3:-62558456 MS.gene048251:CDS
CCCACCCTTGACCCACAACG+TGG 0.596089 2.3:-62558382 MS.gene048251:CDS
CCTAGCCTTAATTCAGTACG+TGG 0.597908 2.3:-62558328 MS.gene048251:CDS
CAACATGGTCGGCGGCGAGG+AGG 0.598694 2.3:+62559883 None:intergenic
CACCCTTGACCCACAACGTG+GGG 0.600798 2.3:-62558380 MS.gene048251:CDS
AATTCGGCTCAAGAAAGAGA+AGG 0.601809 2.3:-62558731 MS.gene048251:CDS
CCACCCTTGACCCACAACGT+GGG 0.601931 2.3:-62558381 MS.gene048251:CDS
GGCGGCGAAGATAAGGTCGC+CGG 0.602029 2.3:+62559845 None:intergenic
CAACAGTAGATGGCCAGATG+TGG 0.602707 2.3:-62558253 MS.gene048251:CDS
TGACCCGACCCGGATCGAGA+CGG 0.603647 2.3:+62559690 None:intergenic
CCACGTACTGAATTAAGGCT+AGG 0.604551 2.3:+62558328 None:intergenic
TTGAGAGGATGGAAAAGGAA+AGG 0.604583 2.3:-62558611 MS.gene048251:CDS
ACCACCTTCCATAAAGGTCG+AGG 0.606661 2.3:-62559715 MS.gene048251:CDS
TATAGGAGGACAGTTGGGAG+CGG 0.607290 2.3:-62558066 MS.gene048251:CDS
GGGAAATGGAGCAACATGGT+CGG 0.622366 2.3:+62559872 None:intergenic
ACATCAATAAGTACTATAGG+AGG 0.623811 2.3:-62558080 MS.gene048251:CDS
GAGCAACATGGTCGGCGGCG+AGG 0.624751 2.3:+62559880 None:intergenic
GAGATAGCTGGAGCATTGCA+GGG 0.625252 2.3:-62558150 MS.gene048251:CDS
GTGGTTGGAGAGGAGGCCGG+CGG 0.625523 2.3:+62559827 None:intergenic
GCAGGACGAAGAAGCTAGAG+CGG 0.631131 2.3:-62558541 MS.gene048251:CDS
AATTGGTGGAAATGATTGAG+AGG 0.633368 2.3:-62558626 MS.gene048251:CDS
AGAAGAAGCATGGAAGCGCG+AGG 0.638350 2.3:-62558580 MS.gene048251:CDS
AGGAAGCGGAATAAGAGAAG+AGG 0.647234 2.3:-62558436 MS.gene048251:CDS
TCGTTCTGCGAAGAAGTGCA+AGG 0.648168 2.3:-62558115 MS.gene048251:CDS
AAGAAGCTAGAGCGGCTGAG+AGG 0.648990 2.3:-62558533 MS.gene048251:CDS
CTAGCCTTAATTCAGTACGT+GGG 0.649391 2.3:-62558327 MS.gene048251:CDS
GGGTCCTCGACCTTTATGGA+AGG 0.655244 2.3:+62559711 None:intergenic
AAATGGAGCAACATGGTCGG+CGG 0.656518 2.3:+62559875 None:intergenic
CTTTATGGAAGGTGGTAGAG+GGG 0.657356 2.3:+62559722 None:intergenic
AGTCGGGAAATGGAGCAACA+TGG 0.658925 2.3:+62559868 None:intergenic
AAATTTGGTAAAGAGGATGA+CGG 0.659081 2.3:-62558673 MS.gene048251:CDS
ACCGAACTTGTGTTCCAATG+CGG 0.661234 2.3:+62558203 None:intergenic
TACCCGGGTTCTTGACAAAG+GGG 0.666977 2.3:+62559657 None:intergenic
ATCAAAAGGATCAATATGGG+AGG 0.676913 2.3:-62558172 MS.gene048251:CDS
TGGTGAGAAGGGAAACCAGG+AGG 0.688570 2.3:+62559747 None:intergenic
ATAAGGGAAGAAAAGGAGCA+GGG 0.692895 2.3:-62557925 MS.gene048251:CDS
TAGCCTTAATTCAGTACGTG+GGG 0.699826 2.3:-62558326 MS.gene048251:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTTATCTTTTTTATTT+TGG - chr2.3:62558237-62558256 MS.gene048251:CDS 10.0%
!!! ATTGTAAATGTTTTGTTTTA+TGG - chr2.3:62558569-62558588 MS.gene048251:CDS 15.0%
!! AAAACATCAATAAGTACTAT+AGG - chr2.3:62559729-62559748 MS.gene048251:CDS 20.0%
!! AATTCAATGGTTAAACAATT+AGG - chr2.3:62558265-62558284 MS.gene048251:CDS 20.0%
!! AGCATATATAATAGTTCATA+AGG - chr2.3:62558842-62558861 MS.gene048251:intron 20.0%
!! ATATATGCTACATAAAAACT+TGG + chr2.3:62558831-62558850 None:intergenic 20.0%
!! ATTTGAATCATTATCGTAAA+AGG + chr2.3:62558997-62559016 None:intergenic 20.0%
!!! ACAATTTTTGTCAATTTTCA+TGG - chr2.3:62558494-62558513 MS.gene048251:CDS 20.0%
!!! TATTTTGGTTGAAAATTCAA+TGG - chr2.3:62558252-62558271 MS.gene048251:CDS 20.0%
! AACAAAAAACATTTCAACAG+CGG - chr2.3:62559527-62559546 MS.gene048251:intron 25.0%
! AGTAAAAACTTTACAAGCTA+AGG + chr2.3:62558196-62558215 None:intergenic 25.0%
! GAAGAAAAAAGAATCATACA+AGG - chr2.3:62558604-62558623 MS.gene048251:CDS 25.0%
! GTAAAAACTTTACAAGCTAA+GGG + chr2.3:62558195-62558214 None:intergenic 25.0%
! TATGAATTTGGATTTGGATT+TGG - chr2.3:62558635-62558654 MS.gene048251:CDS 25.0%
! TCTGCTAATACTAAAGAATT+CGG - chr2.3:62559065-62559084 MS.gene048251:intron 25.0%
! TTGTAGTATGAATTTGGATT+TGG - chr2.3:62558629-62558648 MS.gene048251:CDS 25.0%
! TTTACGTTAGTCAAACAATT+AGG - chr2.3:62558690-62558709 MS.gene048251:CDS 25.0%
!! ATTTGAATTTTCGATCATTG+TGG - chr2.3:62558658-62558677 MS.gene048251:CDS 25.0%
!!! AAGGTATTGTAGTATGAATT+TGG - chr2.3:62558623-62558642 MS.gene048251:CDS 25.0%
AAATTTGGTAAAGAGGATGA+CGG - chr2.3:62559139-62559158 MS.gene048251:intron 30.0%
ACATCAATAAGTACTATAGG+AGG - chr2.3:62559732-62559751 MS.gene048251:CDS 30.0%
AGTCAAACAATTAGGACTAT+TGG - chr2.3:62558698-62558717 MS.gene048251:CDS 30.0%
GTAAATGTAGAATTTCCTGA+TGG - chr2.3:62558763-62558782 MS.gene048251:CDS 30.0%
TGGACAATCTGTATAGAAAT+GGG - chr2.3:62559816-62559835 MS.gene048251:CDS 30.0%
TGTCCAATTCGTTAAAGTAA+GGG + chr2.3:62559802-62559821 None:intergenic 30.0%
TTGGACAATCTGTATAGAAA+TGG - chr2.3:62559815-62559834 MS.gene048251:CDS 30.0%
TTGTCCAATTCGTTAAAGTA+AGG + chr2.3:62559803-62559822 None:intergenic 30.0%
TTGTTTGACTAACGTAAATG+CGG + chr2.3:62558688-62558707 None:intergenic 30.0%
!! ATCGCTGATTCAGAAATTAT+TGG - chr2.3:62559322-62559341 MS.gene048251:intron 30.0%
!! TCGCTGATTCAGAAATTATT+GGG - chr2.3:62559323-62559342 MS.gene048251:intron 30.0%
AATGATTGAGAGGATGGAAA+AGG - chr2.3:62559196-62559215 MS.gene048251:intron 35.0%
AATTGGTGGAAATGATTGAG+AGG - chr2.3:62559186-62559205 MS.gene048251:intron 35.0%
AGAGCAGATGCATAAAGAAT+TGG - chr2.3:62559169-62559188 MS.gene048251:intron 35.0%
ATACCAACAATGCTTCCATA+AGG - chr2.3:62559870-62559889 MS.gene048251:CDS 35.0%
ATCAAAAGGATCAATATGGG+AGG - chr2.3:62559640-62559659 MS.gene048251:intron 35.0%
ATTTCTGAATCAGCGATATG+AGG + chr2.3:62559319-62559338 None:intergenic 35.0%
GATAAAAGAAGAACTTACCC+GGG + chr2.3:62558173-62558192 None:intergenic 35.0%
GGATAAAAGAAGAACTTACC+CGG + chr2.3:62558174-62558193 None:intergenic 35.0%
GGGATCAAAAGGATCAATAT+GGG - chr2.3:62559637-62559656 MS.gene048251:intron 35.0%
GGTAGTGTAGTTGAATTTGA+TGG - chr2.3:62558964-62558983 MS.gene048251:intron 35.0%
TACCAACAATGCTTCCATAA+GGG - chr2.3:62559871-62559890 MS.gene048251:CDS 35.0%
TGGATCCAGCAAATAAAACA+TGG + chr2.3:62558811-62558830 None:intergenic 35.0%
TGGGATCAAAAGGATCAATA+TGG - chr2.3:62559636-62559655 MS.gene048251:intron 35.0%
TGTTTGACTAACGTAAATGC+GGG + chr2.3:62558687-62558706 None:intergenic 35.0%
TTGCAGCAAATTTGGTAAAG+AGG - chr2.3:62559132-62559151 MS.gene048251:intron 35.0%
TTGCCCTTACTTTAACGAAT+TGG - chr2.3:62559796-62559815 MS.gene048251:CDS 35.0%
TTTCTGAATCAGCGATATGA+GGG + chr2.3:62559318-62559337 None:intergenic 35.0%
! GGAAGATTTTGCAGCAAATT+TGG - chr2.3:62559124-62559143 MS.gene048251:intron 35.0%
!!! ACTAGCCATGTTTTATTTGC+TGG - chr2.3:62558803-62558822 MS.gene048251:intron 35.0%
AAGAGAAGAGGATGAAGTTG+AGG - chr2.3:62559388-62559407 MS.gene048251:intron 40.0%
AAGTACTATAGGAGGACAGT+TGG - chr2.3:62559740-62559759 MS.gene048251:CDS 40.0%
AATTCGGCTCAAGAAAGAGA+AGG - chr2.3:62559081-62559100 MS.gene048251:intron 40.0%
ACTACACTACCATGCAATAG+CGG + chr2.3:62558955-62558974 None:intergenic 40.0%
AGTACTATAGGAGGACAGTT+GGG - chr2.3:62559741-62559760 MS.gene048251:CDS 40.0%
ATAAGGGAAGAAAAGGAGCA+GGG - chr2.3:62559887-62559906 MS.gene048251:CDS 40.0%
ATGTAGAATTTCCTGATGGC+AGG - chr2.3:62558767-62558786 MS.gene048251:CDS 40.0%
CTGAATTAAGGCTAGGTTGT+TGG + chr2.3:62559480-62559499 None:intergenic 40.0%
GAACACAAGTTCGGTCATAT+GGG - chr2.3:62559617-62559636 MS.gene048251:intron 40.0%
GCAGATGCATAAAGAATTGG+TGG - chr2.3:62559172-62559191 MS.gene048251:intron 40.0%
GGATAAAGAGAGAAGAAGCA+TGG - chr2.3:62559222-62559241 MS.gene048251:intron 40.0%
TCATCATTTCAGCTCGTCTT+CGG - chr2.3:62559025-62559044 MS.gene048251:intron 40.0%
TCTGTATAGAAATGGGTCCT+TGG - chr2.3:62559823-62559842 MS.gene048251:CDS 40.0%
TGCATTTCCATTTCTCTCCA+AGG + chr2.3:62559843-62559862 None:intergenic 40.0%
TGCTTCCATAAGGGAAGAAA+AGG - chr2.3:62559880-62559899 MS.gene048251:CDS 40.0%
TGTAGAATTTCCTGATGGCA+GGG - chr2.3:62558768-62558787 MS.gene048251:CDS 40.0%
TTCGGTCATATGGGATCAAA+AGG - chr2.3:62559626-62559645 MS.gene048251:intron 40.0%
TTGAGAGGATGGAAAAGGAA+AGG - chr2.3:62559201-62559220 MS.gene048251:intron 40.0%
! GAAGAAGTGCAAGGAGAAAT+GGG - chr2.3:62559706-62559725 MS.gene048251:CDS 40.0%
! TAGCCTTAATTCAGTACGTG+GGG - chr2.3:62559486-62559505 MS.gene048251:intron 40.0%
!! CTAGCCTTAATTCAGTACGT+GGG - chr2.3:62559485-62559504 MS.gene048251:intron 40.0%
!! TTCCCTTATGGAAGCATTGT+TGG + chr2.3:62559876-62559895 None:intergenic 40.0%
!!! GGGCAAGTTTTGCTATTAAC+AGG + chr2.3:62559782-62559801 None:intergenic 40.0%
AATGGGTCCTTGGAGAGAAA+TGG - chr2.3:62559833-62559852 MS.gene048251:CDS 45.0%
ACCGAACTTGTGTTCCAATG+CGG + chr2.3:62559612-62559631 None:intergenic 45.0%
ACCGCATTGGAACACAAGTT+CGG - chr2.3:62559608-62559627 MS.gene048251:intron 45.0%
ACCTTTATGGAAGGTGGTAG+AGG + chr2.3:62558095-62558114 None:intergenic 45.0%
AGGAAGCGGAATAAGAGAAG+AGG - chr2.3:62559376-62559395 MS.gene048251:intron 45.0%
CATAAGGGAAGAAAAGGAGC+AGG - chr2.3:62559886-62559905 MS.gene048251:CDS 45.0%
CATAGCAGTAAGAACCGCAT+TGG - chr2.3:62559595-62559614 MS.gene048251:intron 45.0%
CCACGTACTGAATTAAGGCT+AGG + chr2.3:62559487-62559506 None:intergenic 45.0%
CCTTTATGGAAGGTGGTAGA+GGG + chr2.3:62558094-62558113 None:intergenic 45.0%
CTTTATGGAAGGTGGTAGAG+GGG + chr2.3:62558093-62558112 None:intergenic 45.0%
GAGAAAGAGTTCGAGAAAGC+TGG - chr2.3:62559103-62559122 MS.gene048251:intron 45.0%
GGAACACAAGTTCGGTCATA+TGG - chr2.3:62559616-62559635 MS.gene048251:intron 45.0%
GGAGATGGAGAGAATTAAGC+AGG - chr2.3:62559253-62559272 MS.gene048251:intron 45.0%
GGTGGAAATGATTGAGAGGA+TGG - chr2.3:62559190-62559209 MS.gene048251:intron 45.0%
GTAGAATTTCCTGATGGCAG+GGG - chr2.3:62558769-62558788 MS.gene048251:CDS 45.0%
GTCAATTAGCCGCTATTGCA+TGG - chr2.3:62558943-62558962 MS.gene048251:intron 45.0%
TCAATATGGGAGGAGATAGC+TGG - chr2.3:62559650-62559669 MS.gene048251:intron 45.0%
TTACCCGGGTTCTTGACAAA+GGG + chr2.3:62558159-62558178 None:intergenic 45.0%
! ACCTGATGGGGATGAGTTTT+TGG + chr2.3:62558019-62558038 None:intergenic 45.0%
! CCTGATGGGGATGAGTTTTT+GGG + chr2.3:62558018-62558037 None:intergenic 45.0%
! CGAAGAAGTGCAAGGAGAAA+TGG - chr2.3:62559705-62559724 MS.gene048251:CDS 45.0%
! CTGATGGGGATGAGTTTTTG+GGG + chr2.3:62558017-62558036 None:intergenic 45.0%
! CTGCTCCTTTTCTTCCCTTA+TGG + chr2.3:62559888-62559907 None:intergenic 45.0%
! TTGTTATTGCTCACCTCAGC+CGG + chr2.3:62559512-62559531 None:intergenic 45.0%
!! CCTAGCCTTAATTCAGTACG+TGG - chr2.3:62559484-62559503 MS.gene048251:intron 45.0%
!! GGATGAGTTTTTGGGGATTG+TGG + chr2.3:62558010-62558029 None:intergenic 45.0%
!! TGAGTTTTTGGGGATTGTGG+TGG + chr2.3:62558007-62558026 None:intergenic 45.0%
!! TTTTTGGGGATTGTGGTGGT+TGG + chr2.3:62558003-62558022 None:intergenic 45.0%
AAATGGAGCAACATGGTCGG+CGG + chr2.3:62557940-62557959 None:intergenic 50.0%
ACCACCTTCCATAAAGGTCG+AGG - chr2.3:62558097-62558116 MS.gene048251:CDS 50.0%
AGCGCTTGTACTTCCACATC+TGG + chr2.3:62559575-62559594 None:intergenic 50.0%
AGTCGGGAAATGGAGCAACA+TGG + chr2.3:62557947-62557966 None:intergenic 50.0%
CAAAGAAGAATGACCCGACC+CGG + chr2.3:62558135-62558154 None:intergenic 50.0%
CAACAGTAGATGGCCAGATG+TGG - chr2.3:62559559-62559578 MS.gene048251:intron 50.0%
CCCAAAAACTCATCCCCATC+AGG - chr2.3:62558015-62558034 MS.gene048251:CDS 50.0%
CCCTCTACCACCTTCCATAA+AGG - chr2.3:62558091-62558110 MS.gene048251:CDS 50.0%
CTTAATTCAGTACGTGGGGC+CGG - chr2.3:62559490-62559509 MS.gene048251:intron 50.0%
CTTACCCGGGTTCTTGACAA+AGG + chr2.3:62558160-62558179 None:intergenic 50.0%
CTTATTCCGCTTCCTTCTGC+TGG + chr2.3:62559371-62559390 None:intergenic 50.0%
GCGATCCAAGCAACAGTAGA+TGG - chr2.3:62559549-62559568 MS.gene048251:intron 50.0%
GGGAAATGGAGCAACATGGT+CGG + chr2.3:62557943-62557962 None:intergenic 50.0%
TACCCGGGTTCTTGACAAAG+GGG + chr2.3:62558158-62558177 None:intergenic 50.0%
TATAGGAGGACAGTTGGGAG+CGG - chr2.3:62559746-62559765 MS.gene048251:CDS 50.0%
TCCTCGACCTTTATGGAAGG+TGG + chr2.3:62558101-62558120 None:intergenic 50.0%
TCTGGCCATCTACTGTTGCT+TGG + chr2.3:62559557-62559576 None:intergenic 50.0%
TTGCCCCTTTGTCAAGAACC+CGG - chr2.3:62558152-62558171 MS.gene048251:CDS 50.0%
TTTCCTGATGGCAGGGGTTT+CGG - chr2.3:62558775-62558794 MS.gene048251:CDS 50.0%
! TCGTTCTGCGAAGAAGTGCA+AGG - chr2.3:62559697-62559716 MS.gene048251:CDS 50.0%
!! GAGATAGCTGGAGCATTGCA+GGG - chr2.3:62559662-62559681 MS.gene048251:CDS 50.0%
AAGAAGCTAGAGCGGCTGAG+AGG - chr2.3:62559279-62559298 MS.gene048251:intron 55.0%
AAGATAAGGTCGCCGGAGTC+GGG + chr2.3:62557963-62557982 None:intergenic 55.0%
AGACGGGTCCTCGACCTTTA+TGG + chr2.3:62558108-62558127 None:intergenic 55.0%
AGCTCGTCTTCGGATGACGT+GGG - chr2.3:62559035-62559054 MS.gene048251:intron 55.0%
ATTCCGCTTCCTTCTGCTGG+TGG + chr2.3:62559368-62559387 None:intergenic 55.0%
CAGATTCCTCCACCAGCAGA+AGG - chr2.3:62559356-62559375 MS.gene048251:intron 55.0%
CAGTTGGGAGCGGCAAGAAA+CGG - chr2.3:62559756-62559775 MS.gene048251:CDS 55.0%
CGGCCCCACGTACTGAATTA+AGG + chr2.3:62559492-62559511 None:intergenic 55.0%
GAAGATAAGGTCGCCGGAGT+CGG + chr2.3:62557964-62557983 None:intergenic 55.0%
GATTGTGGTGGTTGGAGAGG+AGG + chr2.3:62557995-62558014 None:intergenic 55.0%
GCAGGACGAAGAAGCTAGAG+CGG - chr2.3:62559271-62559290 MS.gene048251:intron 55.0%
GGGTCCTCGACCTTTATGGA+AGG + chr2.3:62558104-62558123 None:intergenic 55.0%
GTGTGGTGAGAAGGGAAACC+AGG + chr2.3:62558071-62558090 None:intergenic 55.0%
GTTGCTCCATTTCCCGACTC+CGG - chr2.3:62557948-62557967 MS.gene048251:CDS 55.0%
TGAGAAGGGAAACCAGGAGG+AGG + chr2.3:62558065-62558084 None:intergenic 55.0%
TGCCCCTTTGTCAAGAACCC+GGG - chr2.3:62558153-62558172 MS.gene048251:CDS 55.0%
TGGTGAGAAGGGAAACCAGG+AGG + chr2.3:62558068-62558087 None:intergenic 55.0%
! AGAAGAAGCATGGAAGCGCG+AGG - chr2.3:62559232-62559251 MS.gene048251:intron 55.0%
! GTAGAGGGGTGTGGTGAGAA+GGG + chr2.3:62558079-62558098 None:intergenic 55.0%
!! GGAGATAGCTGGAGCATTGC+AGG - chr2.3:62559661-62559680 MS.gene048251:CDS 55.0%
AAACCAGGAGGAGGAGGAGG+AGG + chr2.3:62558056-62558075 None:intergenic 60.0%
AGGAGGAGGGATGGACCTGA+TGG + chr2.3:62558033-62558052 None:intergenic 60.0%
CACCCTTGACCCACAACGTG+GGG - chr2.3:62559432-62559451 MS.gene048251:intron 60.0%
CAGCTCGTCTTCGGATGACG+TGG - chr2.3:62559034-62559053 MS.gene048251:intron 60.0%
CCACCCTTGACCCACAACGT+GGG - chr2.3:62559431-62559450 MS.gene048251:intron 60.0%
CCACGTTGTGGGTCAAGGGT+GGG + chr2.3:62559433-62559452 None:intergenic 60.0%
CCTCCACCAGCAGAAGGAAG+CGG - chr2.3:62559362-62559381 MS.gene048251:intron 60.0%
CTTGACCCACAACGTGGGGT+CGG - chr2.3:62559436-62559455 MS.gene048251:intron 60.0%
GAAGGGAAACCAGGAGGAGG+AGG + chr2.3:62558062-62558081 None:intergenic 60.0%
GACCCCACGTTGTGGGTCAA+GGG + chr2.3:62559437-62559456 None:intergenic 60.0%
GAGGAGGGATGGACCTGATG+GGG + chr2.3:62558031-62558050 None:intergenic 60.0%
GATCCGAAACCCCTGCCATC+AGG + chr2.3:62558781-62558800 None:intergenic 60.0%
GGAGGAGGGATGGACCTGAT+GGG + chr2.3:62558032-62558051 None:intergenic 60.0%
GGGGATTGTGGTGGTTGGAG+AGG + chr2.3:62557998-62558017 None:intergenic 60.0%
TGGAAGGTGGTAGAGGGGTG+TGG + chr2.3:62558088-62558107 None:intergenic 60.0%
! AGCATGGAAGCGCGAGGAGA+TGG - chr2.3:62559238-62559257 MS.gene048251:intron 60.0%
! GGTAGAGGGGTGTGGTGAGA+AGG + chr2.3:62558080-62558099 None:intergenic 60.0%
!! AGCTGGAGCATTGCAGGGCA+TGG - chr2.3:62559667-62559686 MS.gene048251:CDS 60.0%
!! GCTGGAGCATTGCAGGGCAT+GGG - chr2.3:62559668-62559687 MS.gene048251:CDS 60.0%
AGGAGGAGGAGGAGGAGGGA+TGG + chr2.3:62558042-62558061 None:intergenic 65.0%
AGGTCGCCGGAGTCGGGAAA+TGG + chr2.3:62557957-62557976 None:intergenic 65.0%
CCCACCCTTGACCCACAACG+TGG - chr2.3:62559430-62559449 MS.gene048251:intron 65.0%
CCCACGTTGTGGGTCAAGGG+TGG + chr2.3:62559434-62559453 None:intergenic 65.0%
CCGCTTCCTTCTGCTGGTGG+AGG + chr2.3:62559365-62559384 None:intergenic 65.0%
CGACCCCACGTTGTGGGTCA+AGG + chr2.3:62559438-62559457 None:intergenic 65.0%
CTCAGCCGACCCCACGTTGT+GGG + chr2.3:62559444-62559463 None:intergenic 65.0%
GAGGAGGAGGAGGAGGAGGA+GGG + chr2.3:62558046-62558065 None:intergenic 65.0%
GCGCTGCTATTCGACGACGC+TGG + chr2.3:62558876-62558895 None:intergenic 65.0%
GGCGACCTTATCTTCGCCGC+CGG - chr2.3:62557969-62557988 MS.gene048251:CDS 65.0%
GGCGGCGAAGATAAGGTCGC+CGG + chr2.3:62557970-62557989 None:intergenic 65.0%
GGGAAACCAGGAGGAGGAGG+AGG + chr2.3:62558059-62558078 None:intergenic 65.0%
GTCGAGGACCCGTCTCGATC+CGG - chr2.3:62558113-62558132 MS.gene048251:CDS 65.0%
GTGGTGGTTGGAGAGGAGGC+CGG + chr2.3:62557991-62558010 None:intergenic 65.0%
TCGAGGACCCGTCTCGATCC+GGG - chr2.3:62558114-62558133 MS.gene048251:CDS 65.0%
TGACCCGACCCGGATCGAGA+CGG + chr2.3:62558125-62558144 None:intergenic 65.0%
CAACATGGTCGGCGGCGAGG+AGG + chr2.3:62557932-62557951 None:intergenic 70.0%
CCACAACGTGGGGTCGGCTG+AGG - chr2.3:62559442-62559461 MS.gene048251:intron 70.0%
CCAGGAGGAGGAGGAGGAGG+AGG + chr2.3:62558053-62558072 None:intergenic 70.0%
CCTCAGCCGACCCCACGTTG+TGG + chr2.3:62559445-62559464 None:intergenic 70.0%
CCTCCTCCTCCTCCTCCTCC+TGG - chr2.3:62558044-62558063 MS.gene048251:CDS 70.0%
GACCCGACCCGGATCGAGAC+GGG + chr2.3:62558124-62558143 None:intergenic 70.0%
GACCCGTCTCGATCCGGGTC+GGG - chr2.3:62558119-62558138 MS.gene048251:CDS 70.0%
GAGCAACATGGTCGGCGGCG+AGG + chr2.3:62557935-62557954 None:intergenic 70.0%
GGACCCGTCTCGATCCGGGT+CGG - chr2.3:62558118-62558137 MS.gene048251:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr2.3:62558044-62558063 None:intergenic 70.0%
GGAGGCCGGCGGCGAAGATA+AGG + chr2.3:62557977-62557996 None:intergenic 70.0%
GTGGTTGGAGAGGAGGCCGG+CGG + chr2.3:62557988-62558007 None:intergenic 70.0%
TCAGTACGTGGGGCCGGCTG+AGG - chr2.3:62559496-62559515 MS.gene048251:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 62557915 62559919 62557915 ID=MS.gene048251
chr2.3 mRNA 62557915 62559919 62557915 ID=MS.gene048251.t1;Parent=MS.gene048251
chr2.3 exon 62559660 62559919 62559660 ID=MS.gene048251.t1.exon1;Parent=MS.gene048251.t1
chr2.3 CDS 62559660 62559919 62559660 ID=cds.MS.gene048251.t1;Parent=MS.gene048251.t1
chr2.3 exon 62557915 62558797 62557915 ID=MS.gene048251.t1.exon2;Parent=MS.gene048251.t1
chr2.3 CDS 62557915 62558797 62557915 ID=cds.MS.gene048251.t1;Parent=MS.gene048251.t1
Gene Sequence

>MS.gene048251

ATGGACAGCATGAACCTCCTCGCCGCCGACCATGTTGCTCCATTTCCCGACTCCGGCGACCTTATCTTCGCCGCCGGCCTCCTCTCCAACCACCACAATCCCCAAAAACTCATCCCCATCAGGTCCATCCCTCCTCCTCCTCCTCCTCCTCCTCCTGGTTTCCCTTCTCACCACACCCCTCTACCACCTTCCATAAAGGTCGAGGACCCGTCTCGATCCGGGTCGGGTCATTCTTCTTTGCCCCTTTGTCAAGAACCCGGGTAAGTTCTTCTTTTATCCCTTAGCTTGTAAAGTTTTTACTTTTAAATTCATAAAGTTTTTATCTTTTTATCTTTTTTATTTTGGTTGAAAATTCAATGGTTAAACAATTAGGTTTAGTTTTAGTTCTCTCTGTTATTTTTTCAATTTTTTAATTCATTTTGAATTTGTATATGTTTGTTCAATTAAGCACGTTTGAAAAAAGCTAGAAAAAAGTGATTTTTAGTGAGAAAATTTGTTGCAGACAATTGTTGTTTATTTTACTGTCTTCATTGTAGATTTGTATCTTAATTCTTAACAAGATAATAGTAGAGAAATTGAACAATTTTTGTCAATTTTCATGGTGTGTTACAAATATGAAAATTAGTTACACTACTTTGTATGATTATATTTCTGATTGTAAATGTTTTGTTTTATGGTGCTGTGTTAGTGAAGAAAAAAGAATCATACAAGGTATTGTAGTATGAATTTGGATTTGGATTTGGATTTGAATTTTCGATCATTGTGGAATCCCGCATTTACGTTAGTCAAACAATTAGGACTATTGGATCAATATTAAATGATTTGAGTGTTTAGATTGATTGACTGCAGTAAATGTAGAATTTCCTGATGGCAGGGGTTTCGGATCTAACTAGCCATGTTTTATTTGCTGGATCCAAGTTTTTATGTAGCATATATAATAGTTCATAAGGTAATAAATCCAGCGTCGTCGAATAGCAGCGCTGAATTTGAATAAATTGCTATTCTTCTGCTATTTAGTACAAAGTGTCGTCAATTAGCCGCTATTGCATGGTAGTGTAGTTGAATTTGATGGAATATTTCCTTTTACGATAATGATTCAAATTTGTGTTTTCATCATTTCAGCTCGTCTTCGGATGACGTGGGCAATTCATCTGCTAATACTAAAGAATTCGGCTCAAGAAAGAGAAGGAGAAAGAGTTCGAGAAAGCTGGAAGATTTTGCAGCAAATTTGGTAAAGAGGATGACGGAAAAGCAAGAGCAGATGCATAAAGAATTGGTGGAAATGATTGAGAGGATGGAAAAGGAAAGGATAAAGAGAGAAGAAGCATGGAAGCGCGAGGAGATGGAGAGAATTAAGCAGGACGAAGAAGCTAGAGCGGCTGAGAGGTCTCGTAGTTTAGCCCTCATATCGCTGATTCAGAAATTATTGGGTTATGAAATTCAGATTCCTCCACCAGCAGAAGGAAGCGGAATAAGAGAAGAGGATGAAGTTGAGGTGAACAACAACAACAACAGCCCACCCTTGACCCACAACGTGGGGTCGGCTGAGGTGAACAACAACACCAACAACCTAGCCTTAATTCAGTACGTGGGGCCGGCTGAGGTGAGCAATAACAAAAAACATTTCAACAGCGGCGATCCAAGCAACAGTAGATGGCCAGATGTGGAAGTACAAGCGCTCATAGCAGTAAGAACCGCATTGGAACACAAGTTCGGTCATATGGGATCAAAAGGATCAATATGGGAGGAGATAGCTGGAGCATTGCAGGGCATGGGATACAGTCGTTCTGCGAAGAAGTGCAAGGAGAAATGGGAAAACATCAATAAGTACTATAGGAGGACAGTTGGGAGCGGCAAGAAACGGCCTGTTAATAGCAAAACTTGCCCTTACTTTAACGAATTGGACAATCTGTATAGAAATGGGTCCTTGGAGAGAAATGGAAATGCATTGAGCAATACCAACAATGCTTCCATAAGGGAAGAAAAGGAGCAGGGTGAAATTTGA
Protein sequence

>MS.gene048251.t1

MDSMNLLAADHVAPFPDSGDLIFAAGLLSNHHNPQKLIPIRSIPPPPPPPPPGFPSHHTPLPPSIKVEDPSRSGSGHSSLPLCQEPGSSSDDVGNSSANTKEFGSRKRRRKSSRKLEDFAANLVKRMTEKQEQMHKELVEMIERMEKERIKREEAWKREEMERIKQDEEARAAERSRSLALISLIQKLLGYEIQIPPPAEGSGIREEDEVEVNNNNNSPPLTHNVGSAEVNNNTNNLALIQYVGPAEVSNNKKHFNSGDPSNSRWPDVEVQALIAVRTALEHKFGHMGSKGSIWEEIAGALQGMGYSRSAKKCKEKWENINKYYRRTVGSGKKRPVNSKTCPYFNELDNLYRNGSLERNGNALSNTNNASIREEKEQGEI