AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048297

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048297.t1 MTR_0402s0040 26.884 491 247 15 6 471 60 463 4.67e-28 118
MS.gene048297.t1 MTR_4g102720 38.926 149 29 2 1 120 1 116 9.19e-25 103
MS.gene048297.t1 MTR_7g061980 35.398 113 43 2 4 86 7 119 4.32e-14 69.3
MS.gene048297.t1 MTR_0337s0060 29.577 142 95 3 166 305 14 152 9.89e-13 68.6
MS.gene048297.t1 MTR_6g022070 23.810 126 96 0 120 245 39 164 2.32e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048297.t1 AT4G15090 27.346 373 232 5 108 472 377 718 3.38e-34 138
MS.gene048297.t1 AT4G15090 27.346 373 232 5 108 472 377 718 3.38e-34 138
MS.gene048297.t1 AT4G15090 27.346 373 232 5 108 472 377 718 3.38e-34 138
MS.gene048297.t1 AT4G15090 27.346 373 232 5 108 472 377 718 3.38e-34 138
MS.gene048297.t1 AT4G15090 27.346 373 232 5 108 472 377 718 3.38e-34 138
MS.gene048297.t1 AT3G22170 30.882 272 179 4 120 389 398 662 9.39e-33 134
MS.gene048297.t1 AT3G22170 30.882 272 179 4 120 389 398 662 9.39e-33 134
MS.gene048297.t1 AT4G38170 26.235 324 225 5 122 439 180 495 4.64e-30 124
MS.gene048297.t1 AT4G38180 33.040 227 144 3 120 342 413 635 3.65e-29 123
MS.gene048297.t1 AT4G38180 41.237 97 53 2 28 120 124 220 9.77e-11 65.1
MS.gene048297.t1 AT1G76320 27.217 327 213 5 121 445 327 630 8.85e-27 115
MS.gene048297.t1 AT1G76320 27.217 327 213 5 121 445 327 630 9.05e-27 115
MS.gene048297.t1 AT1G76320 27.217 327 213 5 121 445 327 630 9.05e-27 115
MS.gene048297.t1 AT1G76320 27.217 327 213 5 121 445 327 630 1.34e-26 115
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 339 588 2.97e-26 114
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 339 588 2.97e-26 114
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 282 531 3.08e-26 114
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 339 588 3.34e-26 114
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 339 588 3.34e-26 114
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 353 602 4.46e-26 113
MS.gene048297.t1 AT4G19990 31.274 259 163 4 122 374 339 588 4.52e-26 113
MS.gene048297.t1 AT1G80010 26.586 331 217 10 79 396 400 717 5.70e-26 113
MS.gene048297.t1 AT2G27110 27.925 265 184 4 122 385 217 475 3.26e-25 110
MS.gene048297.t1 AT2G27110 27.925 265 184 4 122 385 362 620 3.47e-25 110
MS.gene048297.t1 AT2G27110 27.925 265 184 4 122 385 362 620 3.47e-25 110
MS.gene048297.t1 AT5G18960 32.000 225 138 6 120 338 510 725 9.81e-25 109
MS.gene048297.t1 AT5G18960 32.000 225 138 6 120 338 510 725 9.81e-25 109
MS.gene048297.t1 AT3G06250 29.225 284 185 7 120 396 486 760 3.21e-24 107
MS.gene048297.t1 AT3G06250 29.225 284 185 7 120 396 486 760 3.21e-24 107
MS.gene048297.t1 AT3G06250 29.225 284 185 7 120 396 486 760 3.21e-24 107
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 335 612 3.69e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 335 612 3.69e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 335 612 4.11e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 335 612 4.11e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 335 612 4.11e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 294 571 4.53e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 294 571 4.84e-23 104
MS.gene048297.t1 AT2G32250 24.648 284 208 3 122 405 335 612 5.45e-23 103
MS.gene048297.t1 AT1G52520 25.806 279 191 5 131 396 420 695 2.17e-21 99.0
MS.gene048297.t1 AT1G10240 27.111 225 149 5 123 342 394 608 2.54e-17 85.9
MS.gene048297.t1 AT1G10240 27.111 225 149 5 123 342 394 608 2.54e-17 85.9
MS.gene048297.t1 AT5G28530 24.164 269 190 6 79 346 308 563 7.97e-15 78.2
MS.gene048297.t1 AT5G28530 24.164 269 190 6 79 346 371 626 9.70e-15 77.8
MS.gene048297.t1 AT5G28530 25.651 269 182 8 79 346 308 559 4.55e-14 75.5
MS.gene048297.t1 AT5G28530 25.651 269 182 8 79 346 371 622 4.60e-14 75.9
MS.gene048297.t1 AT5G28530 25.651 269 182 8 79 346 371 622 4.60e-14 75.9

Find 85 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCTCTTTAAAATATA+AGG 0.176322 2.3:+61627901 None:intergenic
TTGAAGATCCTTGGGAGTTC+TGG 0.234863 2.3:-61629511 MS.gene048297:CDS
TTAAGAAACTCGACAGCTTC+TGG 0.244592 2.3:+61627742 None:intergenic
GACAACATATGAGTTGTTTC+TGG 0.253501 2.3:+61629233 None:intergenic
AAATTTGTCCCCGCTTTATT+AGG 0.254015 2.3:-61627789 MS.gene048297:CDS
CCGAAAACCATATCAACTTT+TGG 0.256089 2.3:+61629539 None:intergenic
ACATCCCTCTTTATAAAGTA+TGG 0.262729 2.3:-61628480 MS.gene048297:CDS
TATCTCTTTAATATTGTTAG+AGG 0.283905 2.3:+61627642 None:intergenic
TATTGCAAAGAAAAGGAATA+TGG 0.294986 2.3:-61628058 MS.gene048297:CDS
ATCTCCAGCACAATGTTATA+AGG 0.298579 2.3:-61627812 MS.gene048297:CDS
CCTTGCTTCACAATTTGTTC+TGG 0.300300 2.3:+61629331 None:intergenic
CATATAGGTGCACTTGTAAT+TGG 0.302297 2.3:+61627251 None:intergenic
CTTAAAAGTCTTCATTCATA+TGG 0.313141 2.3:-61627944 MS.gene048297:CDS
TTGGAAGCCAAAAGTTGATA+TGG 0.315145 2.3:-61629546 MS.gene048297:CDS
CTTTGCGCGTTTCTTTCTCT+TGG 0.329292 2.3:+61627519 None:intergenic
ATGAAGAAGACTTTGACATT+AGG 0.337357 2.3:-61628393 MS.gene048297:CDS
CAATTACAAGTGCACCTATA+TGG 0.342061 2.3:-61627250 MS.gene048297:CDS
TGTACAGTATAAAGGAGAAA+TGG 0.347671 2.3:-61628428 MS.gene048297:CDS
TGTCGTAAATTTGAGAGCTT+TGG 0.348811 2.3:-61627985 MS.gene048297:CDS
TGTTATTAGCTAACCATAGA+TGG 0.362982 2.3:+61627206 None:intergenic
TAAGGAAGTTGCTGATGAAT+TGG 0.363801 2.3:-61627722 MS.gene048297:CDS
GATGGAACATCTAGTCAATT+TGG 0.363982 2.3:-61627115 MS.gene048297:CDS
TGCATACAATCAACCATCTA+TGG 0.365263 2.3:-61627219 MS.gene048297:intron
TGAAGAAGACTTTGACATTA+GGG 0.366463 2.3:-61628392 MS.gene048297:CDS
TCGGTAGCTTTGAAGATCCT+TGG 0.368773 2.3:-61629520 MS.gene048297:CDS
ATGGCAAGTGACCTTCGATT+TGG 0.384310 2.3:-61628031 MS.gene048297:CDS
TTTGTTCTGGTCTCTAGTCT+TGG 0.387348 2.3:+61629344 None:intergenic
GCAAAGAATGTACAGTATAA+AGG 0.392434 2.3:-61628436 MS.gene048297:CDS
AGAAGCTGTCGAGTTTCTTA+AGG 0.400377 2.3:-61627740 MS.gene048297:CDS
GATACAAGATGAATGAAGAT+TGG 0.401677 2.3:-61629565 None:intergenic
CGGTAGCTTTGAAGATCCTT+GGG 0.404987 2.3:-61629519 MS.gene048297:CDS
TATGCATTATTAAGCCATAT+AGG 0.412953 2.3:+61627236 None:intergenic
GACTTTAAGAAATGCATGTA+TGG 0.419899 2.3:-61628537 MS.gene048297:intron
GTACAGTATAAAGGAGAAAT+GGG 0.433816 2.3:-61628427 MS.gene048297:CDS
GATGGTGCAACACAAGTAAA+GGG 0.435850 2.3:-61627607 MS.gene048297:CDS
AAGAACAATTTGAAGATGGT+TGG 0.449713 2.3:-61628503 MS.gene048297:CDS
GTTCAAAACGTTGGAAAGGT+TGG 0.454209 2.3:-61627558 MS.gene048297:CDS
CTTATGTTATTGCAAAGAAA+AGG 0.457771 2.3:-61628065 MS.gene048297:CDS
AGTAGAGCTTCACAAACTAT+TGG 0.464878 2.3:-61627865 MS.gene048297:CDS
TGATGGTGCAACACAAGTAA+AGG 0.471729 2.3:-61627608 MS.gene048297:CDS
ACAAATTGTGAAGCAAGGTT+AGG 0.474466 2.3:-61629326 MS.gene048297:CDS
GAATACGAGTTCTTCAGTCT+TGG 0.477905 2.3:+61628210 None:intergenic
ATTTCCTTATAACATTGTGC+TGG 0.482058 2.3:+61627808 None:intergenic
TTCACAAATTCAAGAACCTA+TGG 0.484743 2.3:-61627488 MS.gene048297:intron
GAACACCATACTTTATAAAG+AGG 0.486712 2.3:+61628475 None:intergenic
ATTGCAAAGAAAAGGAATAT+GGG 0.487709 2.3:-61628057 MS.gene048297:CDS
ACATTGTAAATCACTAATGT+TGG 0.488437 2.3:+61627292 None:intergenic
TTCAAAACGTTGGAAAGGTT+GGG 0.489068 2.3:-61627557 MS.gene048297:CDS
TGGGAGTTCTGGAAAACTTA+CGG 0.491418 2.3:-61629500 MS.gene048297:CDS
CTTGTAATTGGCGATGCATA+TGG 0.492051 2.3:+61627263 None:intergenic
GAATGTGGATGGAAAATTGA+TGG 0.494783 2.3:-61629297 MS.gene048297:CDS
CTCTTTAAAATATAAGGCTC+AGG 0.500537 2.3:+61627907 None:intergenic
GAGATATCAAGTACTAATGA+TGG 0.502322 2.3:-61627625 MS.gene048297:CDS
AGAAAAGGAATATGGGAGAA+TGG 0.503260 2.3:-61628050 MS.gene048297:CDS
GATGAAGAACAATTTGAAGA+TGG 0.510431 2.3:-61628507 MS.gene048297:CDS
TAGTCATGTTGTAGAAGACT+TGG 0.514820 2.3:-61627839 MS.gene048297:CDS
TTCTTGAATTTGTGAAGCAG+TGG 0.516062 2.3:+61627495 None:intergenic
AATAGTAGGAGTATAAAGCT+TGG 0.523378 2.3:+61628167 None:intergenic
ATAAGTAGTGAACAAGTGAA+TGG 0.530525 2.3:-61627667 MS.gene048297:CDS
AGGTTGGGTAGAAACGAAAC+TGG 0.532288 2.3:-61627542 MS.gene048297:CDS
CGATTTCCTTTGTTGTACAC+CGG 0.540939 2.3:+61629154 None:intergenic
GTAGAAGAACAAAGCTAAGC+AGG 0.541747 2.3:-61627390 MS.gene048297:intron
TGTGACGATCCTAATAAAGC+GGG 0.542482 2.3:+61627780 None:intergenic
TTAGGACTTAAGAATGTGGA+TGG 0.548535 2.3:-61629308 MS.gene048297:CDS
AAGATGTTGTAGAAGAAAAG+CGG 0.551004 2.3:-61628275 MS.gene048297:CDS
AAGGGGTTTAAGAACAAAGA+AGG 0.557368 2.3:-61627589 MS.gene048297:CDS
AAGAACAAAGAAGGTCCAAA+GGG 0.561141 2.3:-61627580 MS.gene048297:CDS
TTATAGGAGCAACTTGATGA+TGG 0.570385 2.3:-61626998 MS.gene048297:intron
TAAGAACAAAGAAGGTCCAA+AGG 0.577271 2.3:-61627581 MS.gene048297:CDS
AACACCATACTTTATAAAGA+GGG 0.583291 2.3:+61628476 None:intergenic
AAGGGTTCAAAACGTTGGAA+AGG 0.583511 2.3:-61627562 MS.gene048297:CDS
GTCCAAAGGGTTCAAAACGT+TGG 0.588871 2.3:-61627567 MS.gene048297:CDS
TTTATTAGGATCGTCACAGA+AGG 0.594701 2.3:-61627775 MS.gene048297:CDS
GCAAATGTAACTCGTGGTTG+TGG 0.597490 2.3:+61629255 None:intergenic
CCAGAACAAATTGTGAAGCA+AGG 0.610911 2.3:-61629331 MS.gene048297:CDS
CTGTGACGATCCTAATAAAG+CGG 0.623114 2.3:+61627779 None:intergenic
ATTGAACTAGCTGATAGTGC+CGG 0.644559 2.3:-61629173 MS.gene048297:CDS
ATAGTGCCGGTGTACAACAA+AGG 0.660446 2.3:-61629160 MS.gene048297:CDS
TTTCTGGCAAATGTAACTCG+TGG 0.662245 2.3:+61629249 None:intergenic
CAAACAACTCATACTCACGT+TGG 0.665525 2.3:+61628133 None:intergenic
AGCATGCTTTGTGAAAAGCA+TGG 0.679180 2.3:-61628109 MS.gene048297:CDS
ATGGTGCAACACAAGTAAAG+GGG 0.679306 2.3:-61627606 MS.gene048297:CDS
AAGGTTAGGACTTAAGAATG+TGG 0.679784 2.3:-61629312 MS.gene048297:CDS
GTGACGATCCTAATAAAGCG+GGG 0.705450 2.3:+61627781 None:intergenic
GAGTTCTGGAAAACTTACGG+TGG 0.762461 2.3:-61629497 MS.gene048297:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTAATAATACCAT+AGG + chr2.3:61629079-61629098 None:intergenic 10.0%
!!! TATTAAAAATTTTATGAGTA+AGG - chr2.3:61628217-61628236 MS.gene048297:CDS 10.0%
!!! AATTATTTTGGTTTTTATGT+AGG - chr2.3:61629405-61629424 MS.gene048297:intron 15.0%
!!! ACTTGCATTTTTTAAATTAT+AGG - chr2.3:61629534-61629553 MS.gene048297:CDS 15.0%
!!! ATTATTTTGGTTTTTATGTA+GGG - chr2.3:61629406-61629425 MS.gene048297:intron 15.0%
!!! GTTTAGTGTTTAAATTATTT+TGG - chr2.3:61629393-61629412 MS.gene048297:intron 15.0%
!! AAAAAAAAGAGAAAGAAGTT+TGG - chr2.3:61627494-61627513 MS.gene048297:CDS 20.0%
!! TATCTCTTTAATATTGTTAG+AGG + chr2.3:61628909-61628928 None:intergenic 20.0%
!! TTAAACACTAAACATAGTTA+AGG + chr2.3:61629386-61629405 None:intergenic 20.0%
!!! TTGATTGATTACAGTTATTT+TGG - chr2.3:61627648-61627667 MS.gene048297:CDS 20.0%
! AACACCATACTTTATAAAGA+GGG + chr2.3:61628075-61628094 None:intergenic 25.0%
! ACACTTAGGAAATTTAATGA+AGG - chr2.3:61627968-61627987 MS.gene048297:CDS 25.0%
! ACATTGTAAATCACTAATGT+TGG + chr2.3:61629259-61629278 None:intergenic 25.0%
! ACTTAGGAAATTTAATGAAG+GGG - chr2.3:61627970-61627989 MS.gene048297:CDS 25.0%
! AGATTATACACACAGAAAAA+AGG - chr2.3:61627098-61627117 MS.gene048297:CDS 25.0%
! ATTGCAAAGAAAAGGAATAT+GGG - chr2.3:61628491-61628510 MS.gene048297:CDS 25.0%
! CAAAATGGAATTAAACACTT+AGG - chr2.3:61627954-61627973 MS.gene048297:CDS 25.0%
! CACGAAAAAAAGGAATATAA+AGG + chr2.3:61629139-61629158 None:intergenic 25.0%
! CACTTAGGAAATTTAATGAA+GGG - chr2.3:61627969-61627988 MS.gene048297:CDS 25.0%
! CTTAAAAGTCTTCATTCATA+TGG - chr2.3:61628604-61628623 MS.gene048297:intron 25.0%
! CTTATGTTATTGCAAAGAAA+AGG - chr2.3:61628483-61628502 MS.gene048297:CDS 25.0%
! TATGCATTATTAAGCCATAT+AGG + chr2.3:61629315-61629334 None:intergenic 25.0%
! TATTGCAAAGAAAAGGAATA+TGG - chr2.3:61628490-61628509 MS.gene048297:CDS 25.0%
! TGGAATAAGTCAAAAATAGT+AGG + chr2.3:61628398-61628417 None:intergenic 25.0%
!! AAATTTTATGAGTAAGGACT+TGG - chr2.3:61628223-61628242 MS.gene048297:CDS 25.0%
!!! TAGTTTTACTAGCTTATTGA+TGG - chr2.3:61629462-61629481 MS.gene048297:intron 25.0%
AAGAACAATTTGAAGATGGT+TGG - chr2.3:61628045-61628064 MS.gene048297:CDS 30.0%
AAGATGTTGTAGAAGAAAAG+CGG - chr2.3:61628273-61628292 MS.gene048297:CDS 30.0%
ACATCCCTCTTTATAAAGTA+TGG - chr2.3:61628068-61628087 MS.gene048297:CDS 30.0%
AGGTTTCCAAAAATGTAATG+AGG - chr2.3:61629178-61629197 MS.gene048297:CDS 30.0%
ATAAGTAGTGAACAAGTGAA+TGG - chr2.3:61628881-61628900 MS.gene048297:intron 30.0%
ATGAAGAAGACTTTGACATT+AGG - chr2.3:61628155-61628174 MS.gene048297:CDS 30.0%
ATGGTGTTCAGAAAAATGAT+TGG - chr2.3:61628087-61628106 MS.gene048297:CDS 30.0%
ATTTCCTTATAACATTGTGC+TGG + chr2.3:61628743-61628762 None:intergenic 30.0%
CTTAGGAAATTTAATGAAGG+GGG - chr2.3:61627971-61627990 MS.gene048297:CDS 30.0%
GAACACCATACTTTATAAAG+AGG + chr2.3:61628076-61628095 None:intergenic 30.0%
GAGATATCAAGTACTAATGA+TGG - chr2.3:61628923-61628942 MS.gene048297:intron 30.0%
GATGAAGAACAATTTGAAGA+TGG - chr2.3:61628041-61628060 MS.gene048297:CDS 30.0%
GATTTACTGAGTAAAGAAGT+AGG - chr2.3:61627420-61627439 MS.gene048297:intron 30.0%
GCAAAGAATGTACAGTATAA+AGG - chr2.3:61628112-61628131 MS.gene048297:CDS 30.0%
GTACAGTATAAAGGAGAAAT+GGG - chr2.3:61628121-61628140 MS.gene048297:CDS 30.0%
TACTGATCAAGACAAATCAA+TGG - chr2.3:61627869-61627888 MS.gene048297:CDS 30.0%
TATACACACAGAAAAAAGGA+TGG - chr2.3:61627102-61627121 MS.gene048297:CDS 30.0%
TGAAGAAGACTTTGACATTA+GGG - chr2.3:61628156-61628175 MS.gene048297:CDS 30.0%
TGATCAGTAAAAACTGTTTG+AGG + chr2.3:61627858-61627877 None:intergenic 30.0%
TGTACAGTATAAAGGAGAAA+TGG - chr2.3:61628120-61628139 MS.gene048297:CDS 30.0%
TGTTATTAGCTAACCATAGA+TGG + chr2.3:61629345-61629364 None:intergenic 30.0%
TGTTCTTCTACACGAAAAAA+AGG + chr2.3:61629149-61629168 None:intergenic 30.0%
TTCACAAATTCAAGAACCTA+TGG - chr2.3:61629060-61629079 MS.gene048297:intron 30.0%
TTTCCAAAAATGTAATGAGG+CGG - chr2.3:61629181-61629200 MS.gene048297:CDS 30.0%
! AATAGTAGGAGTATAAAGCT+TGG + chr2.3:61628384-61628403 None:intergenic 30.0%
! GACTTTAAGAAATGCATGTA+TGG - chr2.3:61628011-61628030 MS.gene048297:CDS 30.0%
! TGTATTCTTTTCCAAATCGA+AGG + chr2.3:61628531-61628550 None:intergenic 30.0%
!! AGCCTTATATTTTAAAGAGG+TGG - chr2.3:61628645-61628664 MS.gene048297:intron 30.0%
!! CTCTTTAAAATATAAGGCTC+AGG + chr2.3:61628644-61628663 None:intergenic 30.0%
!! CTGAGCCTTATATTTTAAAG+AGG - chr2.3:61628642-61628661 MS.gene048297:intron 30.0%
!! GTCCACCTCTTTAAAATATA+AGG + chr2.3:61628650-61628669 None:intergenic 30.0%
!!! CCAAAAGTTGATATGGTTTT+CGG - chr2.3:61627009-61627028 MS.gene048297:intron 30.0%
!!! TCTTCAGTCTTGGAATTTTT+TGG + chr2.3:61628331-61628350 None:intergenic 30.0%
AAGAACAAAGAAGGTCCAAA+GGG - chr2.3:61628968-61628987 MS.gene048297:intron 35.0%
AAGGGGTTTAAGAACAAAGA+AGG - chr2.3:61628959-61628978 MS.gene048297:intron 35.0%
AAGGTTAGGACTTAAGAATG+TGG - chr2.3:61627236-61627255 MS.gene048297:CDS 35.0%
ACAAATTGTGAAGCAAGGTT+AGG - chr2.3:61627222-61627241 MS.gene048297:CDS 35.0%
AGAAAAGGAATATGGGAGAA+TGG - chr2.3:61628498-61628517 MS.gene048297:CDS 35.0%
AGAAAGAAGTTTGGTACAAG+GGG - chr2.3:61627503-61627522 MS.gene048297:CDS 35.0%
AGAGAAAGAAGTTTGGTACA+AGG - chr2.3:61627501-61627520 MS.gene048297:CDS 35.0%
AGTAGAGCTTCACAAACTAT+TGG - chr2.3:61628683-61628702 MS.gene048297:intron 35.0%
ATCTCCAGCACAATGTTATA+AGG - chr2.3:61628736-61628755 MS.gene048297:intron 35.0%
ATGGTTCAGTTTCTTCTTGT+AGG - chr2.3:61627121-61627140 MS.gene048297:CDS 35.0%
CAATATCTAGCTGATAAGCA+TGG + chr2.3:61627587-61627606 None:intergenic 35.0%
CAATTACAAGTGCACCTATA+TGG - chr2.3:61629298-61629317 MS.gene048297:CDS 35.0%
CATATAGGTGCACTTGTAAT+TGG + chr2.3:61629300-61629319 None:intergenic 35.0%
GAATGTGGATGGAAAATTGA+TGG - chr2.3:61627251-61627270 MS.gene048297:CDS 35.0%
GAGAAAGAAGTTTGGTACAA+GGG - chr2.3:61627502-61627521 MS.gene048297:CDS 35.0%
GATGGAACATCTAGTCAATT+TGG - chr2.3:61629433-61629452 MS.gene048297:intron 35.0%
TAAGAACAAAGAAGGTCCAA+AGG - chr2.3:61628967-61628986 MS.gene048297:intron 35.0%
TAAGGAAGTTGCTGATGAAT+TGG - chr2.3:61628826-61628845 MS.gene048297:intron 35.0%
TAGTCATGTTGTAGAAGACT+TGG - chr2.3:61628709-61628728 MS.gene048297:intron 35.0%
TGATAAGCATGGTAGAAAGT+TGG + chr2.3:61627576-61627595 None:intergenic 35.0%
TGCATACAATCAACCATCTA+TGG - chr2.3:61629329-61629348 MS.gene048297:CDS 35.0%
TGTCGTAAATTTGAGAGCTT+TGG - chr2.3:61628563-61628582 MS.gene048297:intron 35.0%
TTACTGAGTAAAGAAGTAGG+AGG - chr2.3:61627423-61627442 MS.gene048297:intron 35.0%
TTAGGACTTAAGAATGTGGA+TGG - chr2.3:61627240-61627259 MS.gene048297:CDS 35.0%
TTATAGGAGCAACTTGATGA+TGG - chr2.3:61629550-61629569 MS.gene048297:CDS 35.0%
TTCAAAACGTTGGAAAGGTT+GGG - chr2.3:61628991-61629010 MS.gene048297:intron 35.0%
TTCCAAAAATGTAATGAGGC+GGG - chr2.3:61629182-61629201 MS.gene048297:CDS 35.0%
TTCTTGAATTTGTGAAGCAG+TGG + chr2.3:61629056-61629075 None:intergenic 35.0%
TTTATTAGGATCGTCACAGA+AGG - chr2.3:61628773-61628792 MS.gene048297:intron 35.0%
! AAATTTGTCCCCGCTTTATT+AGG - chr2.3:61628759-61628778 MS.gene048297:intron 35.0%
! ATCAGATCACCAATGTGTTT+TGG - chr2.3:61627610-61627629 MS.gene048297:CDS 35.0%
! CCGAAAACCATATCAACTTT+TGG + chr2.3:61627012-61627031 None:intergenic 35.0%
! GACAACATATGAGTTGTTTC+TGG + chr2.3:61627318-61627337 None:intergenic 35.0%
! GTTTTATGATCTCGCTTGTT+TGG + chr2.3:61627177-61627196 None:intergenic 35.0%
! TCAGATCACCAATGTGTTTT+GGG - chr2.3:61627611-61627630 MS.gene048297:CDS 35.0%
!! TTGGAAGCCAAAAGTTGATA+TGG - chr2.3:61627002-61627021 MS.gene048297:intron 35.0%
!!! ATTGATGGTGCATGATTTTG+TGG - chr2.3:61627266-61627285 MS.gene048297:CDS 35.0%
AAACTGCTGAGTCATATGAG+TGG - chr2.3:61627793-61627812 MS.gene048297:CDS 40.0%
AAGGGTTCAAAACGTTGGAA+AGG - chr2.3:61628986-61629005 MS.gene048297:intron 40.0%
AATCCTGAGATGATTGCTAG+TGG + chr2.3:61627723-61627742 None:intergenic 40.0%
ACATAAACCATGGTAAGCTC+CGG + chr2.3:61627919-61627938 None:intergenic 40.0%
AGAAGCTGTCGAGTTTCTTA+AGG - chr2.3:61628808-61628827 MS.gene048297:intron 40.0%
AGCATGCTTTGTGAAAAGCA+TGG - chr2.3:61628439-61628458 MS.gene048297:CDS 40.0%
ATGGTGCAACACAAGTAAAG+GGG - chr2.3:61628942-61628961 MS.gene048297:intron 40.0%
CAAAAATTACAGCTCCTCGA+TGG + chr2.3:61627752-61627771 None:intergenic 40.0%
CAAACAACTCATACTCACGT+TGG + chr2.3:61628418-61628437 None:intergenic 40.0%
CCAGAACAAATTGTGAAGCA+AGG - chr2.3:61627217-61627236 MS.gene048297:intron 40.0%
CTGTGACGATCCTAATAAAG+CGG + chr2.3:61628772-61628791 None:intergenic 40.0%
CTTACCATGGTTTATGTACG+TGG - chr2.3:61627922-61627941 MS.gene048297:CDS 40.0%
CTTGTAATTGGCGATGCATA+TGG + chr2.3:61629288-61629307 None:intergenic 40.0%
GAATACGAGTTCTTCAGTCT+TGG + chr2.3:61628341-61628360 None:intergenic 40.0%
GATGGTGCAACACAAGTAAA+GGG - chr2.3:61628941-61628960 MS.gene048297:intron 40.0%
GTAGAAGAACAAAGCTAAGC+AGG - chr2.3:61629158-61629177 MS.gene048297:CDS 40.0%
GTTCAAAACGTTGGAAAGGT+TGG - chr2.3:61628990-61629009 MS.gene048297:intron 40.0%
TACGGTGGTAAGGTTTGATT+CGG - chr2.3:61627066-61627085 MS.gene048297:intron 40.0%
TGTGACGATCCTAATAAAGC+GGG + chr2.3:61628771-61628790 None:intergenic 40.0%
TTAAGAAACTCGACAGCTTC+TGG + chr2.3:61628809-61628828 None:intergenic 40.0%
TTTGTTCTGGTCTCTAGTCT+TGG + chr2.3:61627207-61627226 None:intergenic 40.0%
! AGGTTTGTTTGCTGCAAAGA+AGG - chr2.3:61627141-61627160 MS.gene048297:intron 40.0%
! ATCCCGCCTCATTACATTTT+TGG + chr2.3:61629187-61629206 None:intergenic 40.0%
! ATTGAACTAGCTGATAGTGC+CGG - chr2.3:61627375-61627394 MS.gene048297:CDS 40.0%
! CATCGAGGAGCTGTAATTTT+TGG - chr2.3:61627750-61627769 MS.gene048297:CDS 40.0%
! CCTTGCTTCACAATTTGTTC+TGG + chr2.3:61627220-61627239 None:intergenic 40.0%
! CGATTTCCTTTGTTGTACAC+CGG + chr2.3:61627397-61627416 None:intergenic 40.0%
! GTTTTTATGTAGGGAGACGA+TGG - chr2.3:61629415-61629434 MS.gene048297:intron 40.0%
! TAAGTTTTCCAGAACTCCCA+AGG + chr2.3:61627048-61627067 None:intergenic 40.0%
! TGATGGTGCAACACAAGTAA+AGG - chr2.3:61628940-61628959 MS.gene048297:intron 40.0%
! TTTCTGGCAAATGTAACTCG+TGG + chr2.3:61627302-61627321 None:intergenic 40.0%
!! TGGGAGTTCTGGAAAACTTA+CGG - chr2.3:61627048-61627067 MS.gene048297:intron 40.0%
!! TTCCAACGTTTTGAACCCTT+TGG + chr2.3:61628986-61629005 None:intergenic 40.0%
AAATTACAGCTCCTCGATGG+TGG + chr2.3:61627749-61627768 None:intergenic 45.0%
AAGAAGTTTGGTACAAGGGG+AGG - chr2.3:61627506-61627525 MS.gene048297:CDS 45.0%
ACGGTGGTAAGGTTTGATTC+GGG - chr2.3:61627067-61627086 MS.gene048297:intron 45.0%
ACGTGGCACTTGATGCAAAA+TGG - chr2.3:61627939-61627958 MS.gene048297:CDS 45.0%
AGACCACTAGCAATCATCTC+AGG - chr2.3:61627717-61627736 MS.gene048297:CDS 45.0%
AGCATCTGCCCAAAACACAT+TGG + chr2.3:61627622-61627641 None:intergenic 45.0%
AGGTTGGGTAGAAACGAAAC+TGG - chr2.3:61629006-61629025 MS.gene048297:intron 45.0%
AGTGCCACGTACATAAACCA+TGG + chr2.3:61627929-61627948 None:intergenic 45.0%
ATGGCAAGTGACCTTCGATT+TGG - chr2.3:61628517-61628536 MS.gene048297:CDS 45.0%
CATAAACCATGGTAAGCTCC+GGG + chr2.3:61627918-61627937 None:intergenic 45.0%
CTGGAAAACTTACGGTGGTA+AGG - chr2.3:61627056-61627075 MS.gene048297:intron 45.0%
CTTTGCGCGTTTCTTTCTCT+TGG + chr2.3:61629032-61629051 None:intergenic 45.0%
GCAAATGTAACTCGTGGTTG+TGG + chr2.3:61627296-61627315 None:intergenic 45.0%
GTCCAAAGGGTTCAAAACGT+TGG - chr2.3:61628981-61629000 MS.gene048297:intron 45.0%
GTGACGATCCTAATAAAGCG+GGG + chr2.3:61628770-61628789 None:intergenic 45.0%
TCAGGATTTAACCACCATCG+AGG - chr2.3:61627735-61627754 MS.gene048297:CDS 45.0%
TTGAAGATCCTTGGGAGTTC+TGG - chr2.3:61627037-61627056 MS.gene048297:intron 45.0%
! GATGGTGCATGATTTTGTGG+AGG - chr2.3:61627269-61627288 MS.gene048297:CDS 45.0%
!! ATAGTGCCGGTGTACAACAA+AGG - chr2.3:61627388-61627407 MS.gene048297:CDS 45.0%
!! ATGTGTTTTGGGCAGATGCT+AGG - chr2.3:61627622-61627641 MS.gene048297:CDS 45.0%
!! CGGTAGCTTTGAAGATCCTT+GGG - chr2.3:61627029-61627048 MS.gene048297:intron 45.0%
!! GAGTTCTGGAAAACTTACGG+TGG - chr2.3:61627051-61627070 MS.gene048297:intron 45.0%
!! TCGGTAGCTTTGAAGATCCT+TGG - chr2.3:61627028-61627047 MS.gene048297:intron 45.0%
! CGGTGGTAAGGTTTGATTCG+GGG - chr2.3:61627068-61627087 MS.gene048297:intron 50.0%
!! AATGGCAAAAGCGTTAGCCG+AGG - chr2.3:61627887-61627906 MS.gene048297:CDS 50.0%
!! GTAAGGTTTGATTCGGGGTG+AGG - chr2.3:61627073-61627092 MS.gene048297:intron 50.0%
AGTTTGGTACAAGGGGAGGC+TGG - chr2.3:61627510-61627529 MS.gene048297:CDS 55.0%
GTAAGCTCCGGGCATAACCT+CGG + chr2.3:61627907-61627926 None:intergenic 55.0%
GTTATGCCCGGAGCTTACCA+TGG - chr2.3:61627909-61627928 MS.gene048297:CDS 55.0%
GCGTTAGCCGAGGTTATGCC+CGG - chr2.3:61627897-61627916 MS.gene048297:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 61626991 61629579 61626991 ID=MS.gene048297
chr2.3 mRNA 61626991 61629579 61626991 ID=MS.gene048297.t1;Parent=MS.gene048297
chr2.3 exon 61629498 61629579 61629498 ID=MS.gene048297.t1.exon1;Parent=MS.gene048297.t1
chr2.3 CDS 61629498 61629579 61629498 ID=cds.MS.gene048297.t1;Parent=MS.gene048297.t1
chr2.3 exon 61629133 61629410 61629133 ID=MS.gene048297.t1.exon2;Parent=MS.gene048297.t1
chr2.3 CDS 61629133 61629410 61629133 ID=cds.MS.gene048297.t1;Parent=MS.gene048297.t1
chr2.3 exon 61627489 61628550 61627489 ID=MS.gene048297.t1.exon3;Parent=MS.gene048297.t1
chr2.3 CDS 61627489 61628550 61627489 ID=cds.MS.gene048297.t1;Parent=MS.gene048297.t1
chr2.3 exon 61627220 61627408 61627220 ID=MS.gene048297.t1.exon4;Parent=MS.gene048297.t1
chr2.3 CDS 61627220 61627408 61627220 ID=cds.MS.gene048297.t1;Parent=MS.gene048297.t1
chr2.3 exon 61627087 61627143 61627087 ID=MS.gene048297.t1.exon5;Parent=MS.gene048297.t1
chr2.3 CDS 61627087 61627143 61627087 ID=cds.MS.gene048297.t1;Parent=MS.gene048297.t1
chr2.3 exon 61626991 61627014 61626991 ID=MS.gene048297.t1.exon6;Parent=MS.gene048297.t1
chr2.3 CDS 61626991 61627014 61626991 ID=cds.MS.gene048297.t1;Parent=MS.gene048297.t1
Gene Sequence

>MS.gene048297

ATGAATGAAGATTGGAAGCCAAAAGTTGATATGGTTTTCGGTAGCTTTGAAGATCCTTGGGAGTTCTGGAAAACTTACGGTGGTAAGGTTTGATTCGGGGTGAGGAAAGATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATACGAAAGCCAAACAAGCGAGATCATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACATTTGCCAGAAACAACTCATATGTTGTCTTCTCAACGAAAGATTTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAGTGCCGGTGTACAACAAAGGAAATCGTTTGATTTACTGAGTAAAGAAGTAGGAGGCAGAACTAACTTGAGTTTTATTTGTCTTGATCAAAAGAATTATCTTCGAAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCTGGCTATTTACTGCAATACTTTCAAAGAAAGTCAGTAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGATGCTAGGATGTTGATTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACACAGACCACTAGCAATCATCTCAGGATTTAACCACCATCGAGGAGCTGTAATTTTTGGAGCTGCATTATTATATGATGAAACTGCTGAGTCATATGAGTGGCTCTTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGACAAATCAATGGCAAAAGCGTTAGCCGAGGTTATGCCCGGAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCTTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAGTATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACATAGTGAAAGCGTGAATGCAGATATTAAAAATTTTATGAGTAAGGACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCGTATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTTGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCAAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACTTCAGTGCCTGAGCCTTATATTTTAAAGAGGTGGACAAAGATATCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTTGTAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCGCTTTATTAGGATCGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTCGAGTTTCTTAAGGAAGTTGCTGATGAATTGGATGAGCAAATGTTGAAGTTTCAAAATATGCAAATAAGTAGTGAACAAGTGAATGGAACCTCTAACAATATTAAAGAGATATCAAGTACTAATGATGGTGCAACACAAGTAAAGGGGTTTAAGAACAAAGAAGGTCCAAAGGGTTCAAAACGTTGGAAAGGTTGGGTAGAAACGAAACTGGCCAAGAGAAAGAAACGCGCAAAGTCCACTGCTTCACAAATTCAAGAACCTATGGTATTATTAATATATTTAGTTTTATTTTTTGTTTTTGTTGACTACATAAGCTCACCTTTATATTCCTTTTTTTCGTGTAGAAGAACAAAGCTAAGCAGGTTTCCAAAAATGTAATGAGGCGGGATGAAGTGTCAAACACAAGTGCTTCACAAAGTCAAAAGCAATATGTTGTGTCCAACATTAGTGATTTACAATGTCAACAGCCATATGCATCGCCAATTACAAGTGCACCTATATGGCTTAATAATGCATACAATCAACCATCTATGGTTAGCTAATAACAATTTGAATTTGTGAATGACCTTAACTATGTTTAGTGTTTAAATTATTTTGGTTTTTATGTAGGGAGACGATGGAACATCTAGTCAATTTGGTGTCGCTAGTTTTACTAGCTTATTGATGGTAAATTTCAAATTATATGATTCACTTTCAAATCTATATATATAATATTAACTTGCATTTTTTAAATTATAGGAGCAACTTGATGATGGTACCTGA
Protein sequence

>MS.gene048297.t1

MNEDWKPKVDMVFGSFEDPWEFWKTYGEGIRKPNKRDHKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELHLPETTHMLSSQRKISEIQCQQIELADSAGVQQRKSFDLLSKEKCMYGYEDEEQFEDGWTSLFIKYGVQKNDWLQRMYSIKEKWASCYMKKTLTLGMRSTQHSESVNADIKNFMSKDLDLIKFFERFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYTPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRWTKISRSRASQTIGVSHVVEDLDLSPAQCYKEICPRFIRIVTEGCRSPEAVEFLKEVADELDEQMLKFQNMQISSEQVNGTSNNIKEISSTNDGATQVKGFKNKEGPKGSKRWKGWVETKLAKRKKRAKSTASQIQEPMKNKAKQVSKNVMRRDEVSNTSASQSQKQYVVSNISDLQCQQPYASPITSAPIWLNNAYNQPSMGDDGTSSQFGVASFTSLLMEQLDDGT