AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04845.t1 MTR_1g093095 75.000 172 40 1 174 342 99 270 2.31e-97 290
MS.gene04845.t1 MTR_4g059870 34.416 154 84 5 184 336 61 198 1.11e-20 93.2
MS.gene04845.t1 MTR_1g094115 33.951 162 87 7 177 336 63 206 1.45e-20 92.8
MS.gene04845.t1 MTR_1g094115 35.526 152 78 7 187 336 56 189 1.53e-20 92.8
MS.gene04845.t1 MTR_1g016010 33.951 162 88 6 182 341 62 206 1.72e-20 92.4
MS.gene04845.t1 MTR_1g112270 33.540 161 89 6 177 336 60 203 1.97e-20 92.8
MS.gene04845.t1 MTR_1g112270 33.540 161 89 6 177 336 71 214 2.03e-20 92.4
MS.gene04845.t1 MTR_8g017210 33.333 159 86 6 184 340 85 225 2.72e-20 92.0
MS.gene04845.t1 MTR_2g099990 32.716 162 89 6 177 336 62 205 4.64e-20 91.3
MS.gene04845.t1 MTR_2g090745 34.091 176 96 8 163 336 9 166 1.09e-19 89.7
MS.gene04845.t1 MTR_2g093960 35.971 139 80 4 184 321 55 185 1.22e-19 89.7
MS.gene04845.t1 MTR_2g099990 33.117 154 83 6 185 336 1 136 4.33e-19 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04845.t1 AT3G57670 61.579 380 92 8 4 342 3 369 3.36e-139 400
MS.gene04845.t1 AT1G51220 55.301 349 122 7 1 338 1 326 4.57e-123 357
MS.gene04845.t1 AT3G20880 56.250 320 108 7 45 341 95 405 1.90e-117 346
MS.gene04845.t1 AT1G13290 68.868 212 40 4 119 328 54 241 1.43e-102 304
MS.gene04845.t1 AT1G34790 64.574 223 70 1 119 341 83 296 6.84e-101 300
MS.gene04845.t1 AT1G08290 75.148 169 38 2 174 338 164 332 3.98e-96 289
MS.gene04845.t1 AT1G34370 38.816 152 81 5 184 326 28 176 3.56e-26 105
MS.gene04845.t1 AT1G34370 38.816 152 81 5 184 326 238 386 1.09e-25 107
MS.gene04845.t1 AT1G34370 38.816 152 81 5 184 326 238 386 1.09e-25 107
MS.gene04845.t1 AT5G22890 39.103 156 82 5 184 329 211 363 1.70e-23 100
MS.gene04845.t1 AT1G55110 35.404 161 85 6 182 340 84 227 1.46e-21 95.5
MS.gene04845.t1 AT1G55110 35.404 161 85 6 182 340 84 227 1.46e-21 95.5
MS.gene04845.t1 AT1G55110 35.404 161 85 6 182 340 84 227 1.46e-21 95.5
MS.gene04845.t1 AT5G03150 34.416 154 84 5 184 336 76 213 3.98e-21 94.4
MS.gene04845.t1 AT2G02070 33.540 161 89 5 177 336 68 211 1.78e-20 92.8
MS.gene04845.t1 AT2G02070 33.540 161 89 5 177 336 68 211 1.78e-20 92.8
MS.gene04845.t1 AT5G66730 35.032 157 82 7 182 336 53 191 2.65e-20 92.0
MS.gene04845.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.00e-20 92.0
MS.gene04845.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.00e-20 92.0
MS.gene04845.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.00e-20 92.0
MS.gene04845.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.00e-20 92.0
MS.gene04845.t1 AT1G14580 33.951 162 87 6 177 336 69 212 6.54e-20 90.9
MS.gene04845.t1 AT1G14580 33.951 162 87 6 177 336 69 212 6.54e-20 90.9
MS.gene04845.t1 AT1G14580 33.951 162 87 6 177 336 83 226 8.19e-20 90.5
MS.gene04845.t1 AT2G02080 34.641 153 82 5 185 336 1 136 1.53e-19 89.4
MS.gene04845.t1 AT2G02080 34.641 153 82 5 185 336 1 136 1.53e-19 89.4
MS.gene04845.t1 AT3G45260 35.065 154 83 5 184 336 62 199 2.45e-19 89.0
MS.gene04845.t1 AT3G45260 35.065 154 83 5 184 336 62 199 2.45e-19 89.0
MS.gene04845.t1 AT5G60470 33.117 154 86 5 184 336 58 195 1.16e-18 87.0
MS.gene04845.t1 AT5G60470 33.117 154 86 5 184 336 63 200 1.26e-18 87.0
MS.gene04845.t1 AT5G60470 33.117 154 86 5 184 336 67 204 1.27e-18 87.0
MS.gene04845.t1 AT3G50700 32.484 157 88 5 182 337 55 194 1.45e-18 86.7
MS.gene04845.t1 AT4G02670 32.298 161 92 4 177 336 71 215 1.46e-18 86.3
MS.gene04845.t1 AT4G02670 32.298 161 92 4 177 336 69 213 1.52e-18 86.3
MS.gene04845.t1 AT5G44160 32.468 154 86 5 184 336 60 196 1.71e-18 86.7
MS.gene04845.t1 AT5G44160 32.468 154 86 5 184 336 21 157 2.00e-18 86.3
MS.gene04845.t1 AT1G03840 32.298 161 91 6 177 336 55 198 3.77e-18 85.9
MS.gene04845.t1 AT1G03840 32.298 161 91 6 177 336 57 200 3.79e-18 85.9
MS.gene04845.t1 AT3G13810 31.677 161 93 5 177 336 86 230 1.18e-17 84.3
MS.gene04845.t1 AT3G13810 31.677 161 93 5 177 336 86 230 1.18e-17 84.3
MS.gene04845.t1 AT3G13810 31.677 161 93 5 177 336 81 225 1.19e-17 84.3
MS.gene04845.t1 AT3G13810 31.677 161 93 5 177 336 67 211 1.25e-17 84.0
MS.gene04845.t1 AT3G13810 31.677 161 93 5 177 336 87 231 1.36e-17 84.0
MS.gene04845.t1 AT3G13810 31.677 161 93 5 177 336 73 217 1.46e-17 84.0
MS.gene04845.t1 AT1G25250 29.496 139 88 5 182 317 54 185 1.68e-13 71.2
MS.gene04845.t1 AT1G25250 29.496 139 88 5 182 317 31 162 1.99e-13 70.9
MS.gene04845.t1 AT1G68130 30.935 139 85 5 182 317 62 192 3.95e-13 70.5

Find 72 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATTCATGGTTAATAAT+AGG 0.242177 7.2:-16878981 MS.gene04845:CDS
AAAGATCATATCAAAGCTTT+TGG 0.279015 7.2:-16877063 MS.gene04845:CDS
TGTGTGCCTCTTAGAGATTC+AGG 0.280812 7.2:+16877348 None:intergenic
GGAAGTGGACATGCTGCTTA+TGG 0.286552 7.2:-16877042 MS.gene04845:CDS
GTTGGTGAGGATTCTTGTTC+AGG 0.320459 7.2:-16879000 MS.gene04845:CDS
AAAAGAATTGTGGGAAGCTT+TGG 0.349652 7.2:-16877128 MS.gene04845:CDS
GAAGAGAAAAGATTAGAGTA+AGG 0.352738 7.2:+16879453 None:intergenic
GGATTCTTGTTCAGGATTCA+TGG 0.360583 7.2:-16878992 MS.gene04845:CDS
ATGATGATGATAGTGGAAAA+AGG 0.364911 7.2:+16879323 None:intergenic
AAACCCTAGTGCTGCTGAAA+TGG 0.370039 7.2:-16879082 MS.gene04845:CDS
GGCTTAACAAAGGACAATAT+TGG 0.383450 7.2:-16878960 MS.gene04845:CDS
CCTTGTTACTGTTGTGCACC+AGG 0.388233 7.2:-16877303 MS.gene04845:CDS
AGAGGTAGTTCTTCTCTTAG+AGG 0.403255 7.2:+16879273 None:intergenic
ACTCCTTCTCAGATTCTCAT+TGG 0.410986 7.2:-16878931 MS.gene04845:CDS
TCTTTGAGAGGCTTTGCTCT+TGG 0.418075 7.2:+16877258 None:intergenic
GAAGTGGACATGCTGCTTAT+GGG 0.418215 7.2:-16877041 MS.gene04845:CDS
ATTTCAGCAGCACTAGGGTT+TGG 0.419339 7.2:+16879084 None:intergenic
GATCTCTGAGGAGTTATTAG+AGG 0.433036 7.2:+16879044 None:intergenic
GAAGGGTTTGAATTTGAAGA+TGG 0.443053 7.2:+16879396 None:intergenic
AGGAAATATGATGATGATAG+TGG 0.447261 7.2:+16879316 None:intergenic
TTCCCTTTCTTCTAAATCCA+TGG 0.448360 7.2:+16879164 None:intergenic
AGACCTTCCTTGCACTGCCA+TGG 0.468218 7.2:-16879181 MS.gene04845:CDS
TGCCATGGATTTAGAAGAAA+GGG 0.480220 7.2:-16879166 MS.gene04845:CDS
TCTTGCTCTACTTCAGAAGC+TGG 0.480582 7.2:+16876991 None:intergenic
AGGAGAAGGTGGTGAAGAAG+AGG 0.481051 7.2:+16879296 None:intergenic
CTAAGAGGCACACAACCAAC+AGG 0.487480 7.2:-16877339 MS.gene04845:CDS
TTGTTGTGGTGGTGAAGAAA+AGG 0.494029 7.2:+16879357 None:intergenic
GAAGCCATTTCAGCAGCACT+AGG 0.500052 7.2:+16879078 None:intergenic
TCTTCTCTTAGAGGAGGAGA+AGG 0.501187 7.2:+16879282 None:intergenic
AAGAGAAAAGATTAGAGTAA+GGG 0.501589 7.2:+16879454 None:intergenic
GAACTCATGAAAAGAATTGT+GGG 0.503233 7.2:-16877137 MS.gene04845:CDS
AGAACTCATGAAAAGAATTG+TGG 0.519976 7.2:-16877138 MS.gene04845:CDS
TTAGAAGAAAGGGAAGAAGA+TGG 0.524706 7.2:-16879156 MS.gene04845:CDS
GTTACTGTTGCACTTCACAT+AGG 0.528079 7.2:-16879111 MS.gene04845:CDS
ATGAGAATCTGAGAAGGAGT+AGG 0.530035 7.2:+16878934 None:intergenic
TGTTGTGGTGGTGAAGAAAA+GGG 0.533983 7.2:+16879358 None:intergenic
CATGCTGCTTATGGGTGTGA+TGG 0.534441 7.2:-16877033 MS.gene04845:CDS
GTTGGAATTAGGCTTAAAAG+AGG 0.534675 7.2:+16879255 None:intergenic
CATGGATCACAGTACAGAAA+AGG 0.538411 7.2:-16877372 MS.gene04845:CDS
CTGCCATGGATTTAGAAGAA+AGG 0.539425 7.2:-16879167 MS.gene04845:CDS
AATCCATGGCAGTGCAAGGA+AGG 0.544023 7.2:+16879178 None:intergenic
AGGTATGGTTATTGTTGTTG+TGG 0.546230 7.2:+16879343 None:intergenic
GGTGGTGAAGAAAAGGGTGG+TGG 0.550176 7.2:+16879364 None:intergenic
TATGGTTATTGTTGTTGTGG+TGG 0.558394 7.2:+16879346 None:intergenic
AAGCTTTGGTATTGTATCTG+TGG 0.559395 7.2:-16877114 MS.gene04845:CDS
ACACATTACAAGAGGAAACA+TGG 0.569309 7.2:-16877219 MS.gene04845:CDS
ACAGGGCAAGAAAACTGAGT+TGG 0.573007 7.2:+16878907 None:intergenic
TGAGAATCTGAGAAGGAGTA+GGG 0.575360 7.2:+16878935 None:intergenic
AAAGGTCCTGAATCTCTAAG+AGG 0.580235 7.2:-16877354 MS.gene04845:CDS
AGTGTTCTAAAATCTTTGAG+AGG 0.584894 7.2:+16877246 None:intergenic
CTTGTTACTGTTGTGCACCA+GGG 0.585436 7.2:-16877302 MS.gene04845:CDS
AGAGTAAGGGTTATCAGCCA+TGG 0.585920 7.2:+16879467 None:intergenic
TCTCTTAGAGGAGGAGAAGG+TGG 0.585932 7.2:+16879285 None:intergenic
GGTAGTTCTTCTCTTAGAGG+AGG 0.595867 7.2:+16879276 None:intergenic
CACTTCAAACACATTACAAG+AGG 0.601250 7.2:-16877227 MS.gene04845:CDS
AAGCCATTTCAGCAGCACTA+GGG 0.602433 7.2:+16879079 None:intergenic
TCTAAATCCATGGCAGTGCA+AGG 0.604858 7.2:+16879174 None:intergenic
GGTAGCCTTAGCATTCCTGT+TGG 0.607467 7.2:+16877324 None:intergenic
TCAATGTTGTTTCTGCACCC+TGG 0.610178 7.2:+16877285 None:intergenic
CACAACCAACAGGAATGCTA+AGG 0.612992 7.2:-16877329 MS.gene04845:CDS
ATCACTGATAAAGAACATGT+TGG 0.619011 7.2:-16879018 MS.gene04845:CDS
CAATAGATATAACAACATGC+AGG 0.621278 7.2:-16878869 MS.gene04845:intron
GGACCAATGAGAATCTGAGA+AGG 0.626496 7.2:+16878928 None:intergenic
GTTAATAATAGGCTTAACAA+AGG 0.627528 7.2:-16878970 MS.gene04845:CDS
TGATAAAGAACATGTTGGTG+AGG 0.633314 7.2:-16879013 MS.gene04845:CDS
AGATCAACAAGAACATGAGG+TGG 0.635764 7.2:-16879211 MS.gene04845:CDS
CATGTGTAGAAAATGTAGCA+AGG 0.640710 7.2:-16877184 MS.gene04845:CDS
CCTGGTGCACAACAGTAACA+AGG 0.646997 7.2:+16877303 None:intergenic
TGAAGATCAACAAGAACATG+AGG 0.648021 7.2:-16879214 MS.gene04845:CDS
GTGTGATGGATTTGAAGAAG+AGG 0.666362 7.2:-16877019 MS.gene04845:CDS
TGTGGTGGTGAAGAAAAGGG+TGG 0.675317 7.2:+16879361 None:intergenic
ATCAGTGATAGTGATCTCTG+AGG 0.722446 7.2:+16879032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATTGATTACTA+AGG + chr7.2:16878741-16878760 None:intergenic 10.0%
!! AAAATAAAATTGATTACTAA+GGG + chr7.2:16878740-16878759 None:intergenic 10.0%
!!! TATTTTTAAAATTACAGTTT+TGG - chr7.2:16878608-16878627 MS.gene04845:intron 10.0%
!! ATAGCATATATTAATTTCAT+TGG - chr7.2:16878013-16878032 MS.gene04845:intron 15.0%
!!! TTTTAAACCTTGAATTATAA+AGG + chr7.2:16877704-16877723 None:intergenic 15.0%
!! AAAAAATTTCTGTTCTATAC+AGG + chr7.2:16878270-16878289 None:intergenic 20.0%
!! AATTTGAAGATGGAAAAATA+TGG + chr7.2:16877064-16877083 None:intergenic 20.0%
!! ATTAAACTATGGAAAAAAGA+AGG + chr7.2:16878397-16878416 None:intergenic 20.0%
!! TATTAATGAACAATCATGAA+GGG + chr7.2:16878846-16878865 None:intergenic 20.0%
!! TTATTAATGAACAATCATGA+AGG + chr7.2:16878847-16878866 None:intergenic 20.0%
!! TTTCAAAAACTATTTCAAAC+AGG - chr7.2:16878714-16878733 MS.gene04845:intron 20.0%
!!! AAAAACTAAAGAAGAGTTTT+TGG + chr7.2:16878569-16878588 None:intergenic 20.0%
!!! ATTTATTTTAATGATCGATC+TGG + chr7.2:16878304-16878323 None:intergenic 20.0%
!!! GTCTTCAATTTTTTAGTTTT+GGG - chr7.2:16878636-16878655 MS.gene04845:intron 20.0%
!!! TCATATTTTTCTTGTTTTGT+TGG + chr7.2:16877233-16877252 None:intergenic 20.0%
!!! TGTCTTCAATTTTTTAGTTT+TGG - chr7.2:16878635-16878654 MS.gene04845:intron 20.0%
! AAGAAAGTTATTGACAGAAA+AGG + chr7.2:16877772-16877791 None:intergenic 25.0%
! AAGAGAAAAGATTAGAGTAA+GGG + chr7.2:16877016-16877035 None:intergenic 25.0%
! ACAGATTTCAATGTAGTAAA+AGG + chr7.2:16878223-16878242 None:intergenic 25.0%
! AGAAAGTTATTGACAGAAAA+GGG + chr7.2:16877771-16877790 None:intergenic 25.0%
! AGTTTAGTCAATCAAAGAAA+AGG + chr7.2:16878179-16878198 None:intergenic 25.0%
! ATGGAAAAATATGGTTGAAT+TGG + chr7.2:16877055-16877074 None:intergenic 25.0%
! CAAAAAGAAAGAAATGAAAG+AGG + chr7.2:16877883-16877902 None:intergenic 25.0%
! CATTTAGAGATAGAAAAATG+TGG - chr7.2:16878492-16878511 MS.gene04845:intron 25.0%
! GTTAATAATAGGCTTAACAA+AGG - chr7.2:16877497-16877516 MS.gene04845:intron 25.0%
! TAAAAAATTGTTCCTCTTTG+TGG - chr7.2:16878327-16878346 MS.gene04845:intron 25.0%
!! AAAGATCATATCAAAGCTTT+TGG - chr7.2:16879404-16879423 MS.gene04845:CDS 25.0%
!! GTTTTTATAGATGCATATGT+GGG - chr7.2:16879070-16879089 MS.gene04845:CDS 25.0%
!! TACAAGTCTTCTTTTTACAA+TGG + chr7.2:16878692-16878711 None:intergenic 25.0%
!! TTCAGTAGATCTTGATAATA+AGG + chr7.2:16878917-16878936 None:intergenic 25.0%
!! TTCTGAAGAAAGAAAAAAGA+AGG + chr7.2:16877967-16877986 None:intergenic 25.0%
!! TTTTTATAGATGCATATGTG+GGG - chr7.2:16879071-16879090 MS.gene04845:CDS 25.0%
!!! TGTTTTTATAGATGCATATG+TGG - chr7.2:16879069-16879088 MS.gene04845:CDS 25.0%
!!! TTTCTTGTTTTGTTGGAATT+AGG + chr7.2:16877226-16877245 None:intergenic 25.0%
AAAAAGAAGGCAAATTTGGA+TGG + chr7.2:16878384-16878403 None:intergenic 30.0%
AAATTTCTGTTCTATACAGG+TGG + chr7.2:16878267-16878286 None:intergenic 30.0%
AATTTCTGTTCTATACAGGT+GGG + chr7.2:16878266-16878285 None:intergenic 30.0%
AGAACTCATGAAAAGAATTG+TGG - chr7.2:16879329-16879348 MS.gene04845:CDS 30.0%
AGTCAATCAAAGAAAAGGAA+AGG + chr7.2:16878174-16878193 None:intergenic 30.0%
ATCACTGATAAAGAACATGT+TGG - chr7.2:16877449-16877468 MS.gene04845:intron 30.0%
ATTCATATATACTGAGAGAC+TGG - chr7.2:16878130-16878149 MS.gene04845:intron 30.0%
ATTTGGATGGTATATTAGCA+TGG + chr7.2:16878371-16878390 None:intergenic 30.0%
CAATAGATATAACAACATGC+AGG - chr7.2:16877598-16877617 MS.gene04845:intron 30.0%
CACACTTCCTTTATAATTCA+AGG - chr7.2:16877694-16877713 MS.gene04845:intron 30.0%
CAGGATTCATGGTTAATAAT+AGG - chr7.2:16877486-16877505 MS.gene04845:intron 30.0%
GAAAGAAAAAAGAAGGAAAG+AGG + chr7.2:16877960-16877979 None:intergenic 30.0%
GAACTCATGAAAAGAATTGT+GGG - chr7.2:16879330-16879349 MS.gene04845:CDS 30.0%
GAAGAGAAAAGATTAGAGTA+AGG + chr7.2:16877017-16877036 None:intergenic 30.0%
TCTCTCAGTATATATGAATC+AGG + chr7.2:16878129-16878148 None:intergenic 30.0%
TGAAACAAAACAGAAGAACA+AGG + chr7.2:16877669-16877688 None:intergenic 30.0%
TGAAGGGCAAAGATTTAATT+TGG + chr7.2:16878830-16878849 None:intergenic 30.0%
TGGAAAAAAGAAGGCAAATT+TGG + chr7.2:16878388-16878407 None:intergenic 30.0%
TTCATATATACTGAGAGACT+GGG - chr7.2:16878131-16878150 MS.gene04845:intron 30.0%
! AGCTAGTGTTAAATTTTGCA+TGG - chr7.2:16878072-16878091 MS.gene04845:intron 30.0%
! AGGAAATATGATGATGATAG+TGG + chr7.2:16877154-16877173 None:intergenic 30.0%
! CTACATTTTCTACACATGAA+TGG + chr7.2:16879281-16879300 None:intergenic 30.0%
! GTAGATCTTGATAATAAGGT+CGG + chr7.2:16878913-16878932 None:intergenic 30.0%
! GTTCTGATTTTAAACACAAG+AGG - chr7.2:16879375-16879394 MS.gene04845:CDS 30.0%
! TCAATGTAGTAAAAGGCATA+AGG + chr7.2:16878216-16878235 None:intergenic 30.0%
! TCCTTGATTTGAACCATTAA+CGG - chr7.2:16877791-16877810 MS.gene04845:intron 30.0%
! TTTTATAGATGCATATGTGG+GGG - chr7.2:16879072-16879091 MS.gene04845:CDS 30.0%
!! AGTGTTCTAAAATCTTTGAG+AGG + chr7.2:16879224-16879243 None:intergenic 30.0%
!! ATGATGATGATAGTGGAAAA+AGG + chr7.2:16877147-16877166 None:intergenic 30.0%
!!! TGAAAGTTTTAGAGCAAACA+GGG + chr7.2:16877580-16877599 None:intergenic 30.0%
!!! TTGAAAGTTTTAGAGCAAAC+AGG + chr7.2:16877581-16877600 None:intergenic 30.0%
!!! TTTTGGAAAGTGTTTCAAAC+AGG + chr7.2:16878552-16878571 None:intergenic 30.0%
AAAAAGAAGGAAAGAGGTCA+AGG + chr7.2:16877954-16877973 None:intergenic 35.0%
AAAAGAATTGTGGGAAGCTT+TGG - chr7.2:16879339-16879358 MS.gene04845:CDS 35.0%
AAACAGAAGAACAAGGTCTT+TGG + chr7.2:16877662-16877681 None:intergenic 35.0%
ACACATTACAAGAGGAAACA+TGG - chr7.2:16879248-16879267 MS.gene04845:CDS 35.0%
ACCGTTAATGGTTCAAATCA+AGG + chr7.2:16877795-16877814 None:intergenic 35.0%
CACTTCAAACACATTACAAG+AGG - chr7.2:16879240-16879259 MS.gene04845:CDS 35.0%
CATGTGTAGAAAATGTAGCA+AGG - chr7.2:16879283-16879302 MS.gene04845:CDS 35.0%
GAAGGGTTTGAATTTGAAGA+TGG + chr7.2:16877074-16877093 None:intergenic 35.0%
GGCTTAACAAAGGACAATAT+TGG - chr7.2:16877507-16877526 MS.gene04845:intron 35.0%
GTATATTAGCATGGTTGGAT+TGG + chr7.2:16878362-16878381 None:intergenic 35.0%
GTTGGAATTAGGCTTAAAAG+AGG + chr7.2:16877215-16877234 None:intergenic 35.0%
TGAAGATCAACAAGAACATG+AGG - chr7.2:16877253-16877272 MS.gene04845:CDS 35.0%
TGATAAAGAACATGTTGGTG+AGG - chr7.2:16877454-16877473 MS.gene04845:intron 35.0%
TGCCATGGATTTAGAAGAAA+GGG - chr7.2:16877301-16877320 MS.gene04845:CDS 35.0%
TTAGAAGAAAGGGAAGAAGA+TGG - chr7.2:16877311-16877330 MS.gene04845:CDS 35.0%
TTCCCTTTCTTCTAAATCCA+TGG + chr7.2:16877306-16877325 None:intergenic 35.0%
! AAGCTTTGGTATTGTATCTG+TGG - chr7.2:16879353-16879372 MS.gene04845:CDS 35.0%
! AGAAAAGGAAAGGTGTAGTA+AGG + chr7.2:16878164-16878183 None:intergenic 35.0%
! AGGTATGGTTATTGTTGTTG+TGG + chr7.2:16877127-16877146 None:intergenic 35.0%
! GCTATAACTCTAGAAGAAAG+AGG + chr7.2:16877998-16878017 None:intergenic 35.0%
! TATGGTTATTGTTGTTGTGG+TGG + chr7.2:16877124-16877143 None:intergenic 35.0%
!! CATATCAAAGCTTTTGGAAG+TGG - chr7.2:16879410-16879429 MS.gene04845:CDS 35.0%
!! GATGATAGTGGAAAAAGGTA+TGG + chr7.2:16877142-16877161 None:intergenic 35.0%
AAAGGTCCTGAATCTCTAAG+AGG - chr7.2:16879113-16879132 MS.gene04845:CDS 40.0%
AAGCATCAGAGAACCGTTAA+TGG + chr7.2:16877807-16877826 None:intergenic 40.0%
ACTCCTTCTCAGATTCTCAT+TGG - chr7.2:16877536-16877555 MS.gene04845:intron 40.0%
AGAGGTAGTTCTTCTCTTAG+AGG + chr7.2:16877197-16877216 None:intergenic 40.0%
AGATCAACAAGAACATGAGG+TGG - chr7.2:16877256-16877275 MS.gene04845:CDS 40.0%
ATGAGAATCTGAGAAGGAGT+AGG + chr7.2:16877536-16877555 None:intergenic 40.0%
ATTAACGGTTCTCTGATGCT+TGG - chr7.2:16877806-16877825 MS.gene04845:intron 40.0%
CATGGATCACAGTACAGAAA+AGG - chr7.2:16879095-16879114 MS.gene04845:CDS 40.0%
CTGCCATGGATTTAGAAGAA+AGG - chr7.2:16877300-16877319 MS.gene04845:CDS 40.0%
GGATGGTATATTAGCATGGT+TGG + chr7.2:16878367-16878386 None:intergenic 40.0%
GGATTCTTGTTCAGGATTCA+TGG - chr7.2:16877475-16877494 MS.gene04845:intron 40.0%
GTTACTGTTGCACTTCACAT+AGG - chr7.2:16877356-16877375 MS.gene04845:CDS 40.0%
TCTGATGCTTGGATAGAAAG+AGG - chr7.2:16877817-16877836 MS.gene04845:intron 40.0%
TGAGAATCTGAGAAGGAGTA+GGG + chr7.2:16877535-16877554 None:intergenic 40.0%
! ATCAGTGATAGTGATCTCTG+AGG + chr7.2:16877438-16877457 None:intergenic 40.0%
! GATCTCTGAGGAGTTATTAG+AGG + chr7.2:16877426-16877445 None:intergenic 40.0%
! TGTTGTGGTGGTGAAGAAAA+GGG + chr7.2:16877112-16877131 None:intergenic 40.0%
! TTGTTGTGGTGGTGAAGAAA+AGG + chr7.2:16877113-16877132 None:intergenic 40.0%
!! GTGTGATGGATTTGAAGAAG+AGG - chr7.2:16879448-16879467 MS.gene04845:CDS 40.0%
!!! CTTTTGCTGTTAGAGGAGAT+TGG - chr7.2:16879306-16879325 MS.gene04845:CDS 40.0%
AAGCCATTTCAGCAGCACTA+GGG + chr7.2:16877391-16877410 None:intergenic 45.0%
ACAGGGCAAGAAAACTGAGT+TGG + chr7.2:16877563-16877582 None:intergenic 45.0%
AGAAGCAGAAGCAGAAGCAA+TGG + chr7.2:16877744-16877763 None:intergenic 45.0%
ATTTCAGCAGCACTAGGGTT+TGG + chr7.2:16877386-16877405 None:intergenic 45.0%
CACAACCAACAGGAATGCTA+AGG - chr7.2:16879138-16879157 MS.gene04845:CDS 45.0%
CTTGTTACTGTTGTGCACCA+GGG - chr7.2:16879165-16879184 MS.gene04845:CDS 45.0%
GGACCAATGAGAATCTGAGA+AGG + chr7.2:16877542-16877561 None:intergenic 45.0%
GGTAGTTCTTCTCTTAGAGG+AGG + chr7.2:16877194-16877213 None:intergenic 45.0%
TCTAAATCCATGGCAGTGCA+AGG + chr7.2:16877296-16877315 None:intergenic 45.0%
TCTTCTCTTAGAGGAGGAGA+AGG + chr7.2:16877188-16877207 None:intergenic 45.0%
TGGACTAAGAAGCCACAAAG+AGG + chr7.2:16878342-16878361 None:intergenic 45.0%
TGTGTGCCTCTTAGAGATTC+AGG + chr7.2:16879122-16879141 None:intergenic 45.0%
! AAACCCTAGTGCTGCTGAAA+TGG - chr7.2:16877385-16877404 MS.gene04845:CDS 45.0%
! GAAGTGGACATGCTGCTTAT+GGG - chr7.2:16879426-16879445 MS.gene04845:CDS 45.0%
! GTTGGTGAGGATTCTTGTTC+AGG - chr7.2:16877467-16877486 MS.gene04845:intron 45.0%
! TCTTTGAGAGGCTTTGCTCT+TGG + chr7.2:16879212-16879231 None:intergenic 45.0%
!! AGAAAAGGGTGGTGGTTTTG+TGG + chr7.2:16877098-16877117 None:intergenic 45.0%
!! TCAATGTTGTTTCTGCACCC+TGG + chr7.2:16879185-16879204 None:intergenic 45.0%
!!! AGCAAGGCTTTTGCTGTTAG+AGG - chr7.2:16879299-16879318 MS.gene04845:CDS 45.0%
!! AATATAATTTAATTAAACTA+TGG + chr7.2:16878408-16878427 None:intergenic 5.0%
!!! CAAAATAAATATTTTTATTT+TGG + chr7.2:16878958-16878977 None:intergenic 5.0%
!!! TTATTTTAAGAAATAATTTT+GGG - chr7.2:16878047-16878066 MS.gene04845:intron 5.0%
!!! TTTATTTTAAGAAATAATTT+TGG - chr7.2:16878046-16878065 MS.gene04845:intron 5.0%
AATCCATGGCAGTGCAAGGA+AGG + chr7.2:16877292-16877311 None:intergenic 50.0%
AGGAGAAGGTGGTGAAGAAG+AGG + chr7.2:16877174-16877193 None:intergenic 50.0%
CCTGGTGCACAACAGTAACA+AGG + chr7.2:16879167-16879186 None:intergenic 50.0%
CCTTGTTACTGTTGTGCACC+AGG - chr7.2:16879164-16879183 MS.gene04845:CDS 50.0%
GAAGCCATTTCAGCAGCACT+AGG + chr7.2:16877392-16877411 None:intergenic 50.0%
TAGATGCATATGTGGGGGCA+TGG - chr7.2:16879077-16879096 MS.gene04845:CDS 50.0%
TCTCTTAGAGGAGGAGAAGG+TGG + chr7.2:16877185-16877204 None:intergenic 50.0%
! CATGCTGCTTATGGGTGTGA+TGG - chr7.2:16879434-16879453 MS.gene04845:CDS 50.0%
! CTAAGAGGCACACAACCAAC+AGG - chr7.2:16879128-16879147 MS.gene04845:CDS 50.0%
! GGAAGTGGACATGCTGCTTA+TGG - chr7.2:16879425-16879444 MS.gene04845:CDS 50.0%
! GGTAGCCTTAGCATTCCTGT+TGG + chr7.2:16879146-16879165 None:intergenic 50.0%
! TGTGGTGGTGAAGAAAAGGG+TGG + chr7.2:16877109-16877128 None:intergenic 50.0%
!!! GGTGGTGGTTTTGTGGAGAA+GGG + chr7.2:16877091-16877110 None:intergenic 50.0%
AGACCTTCCTTGCACTGCCA+TGG - chr7.2:16877286-16877305 MS.gene04845:CDS 55.0%
GGTGGTGAAGAAAAGGGTGG+TGG + chr7.2:16877106-16877125 None:intergenic 55.0%
!!! GGGTGGTGGTTTTGTGGAGA+AGG + chr7.2:16877092-16877111 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16877002 16879487 16877002 ID=MS.gene04845
chr7.2 mRNA 16877002 16879487 16877002 ID=MS.gene04845.t1;Parent=MS.gene04845
chr7.2 exon 16878870 16879487 16878870 ID=MS.gene04845.t1.exon1;Parent=MS.gene04845.t1
chr7.2 CDS 16878870 16879487 16878870 ID=cds.MS.gene04845.t1;Parent=MS.gene04845.t1
chr7.2 exon 16877002 16877409 16877002 ID=MS.gene04845.t1.exon2;Parent=MS.gene04845.t1
chr7.2 CDS 16877002 16877409 16877002 ID=cds.MS.gene04845.t1;Parent=MS.gene04845.t1
Gene Sequence

>MS.gene04845

ATGGCTGATAACCCTTACTCTAATCTTTTCTCTTCTTCATCAAGTTTCTTCCAATTCAACCATATTTTTCCATCTTCAAATTCAAACCCTTCTCCACAAAACCACCACCCTTTTCTTCACCACCACAACAACAATAACCATACCTTTTTCCACTATCATCATCATATTTCCTCTTCTTCACCACCTTCTCCTCCTCTAAGAGAAGAACTACCTCTTTTAAGCCTAATTCCAACAAAACAAGAAAAATATGATGAAGATCAACAAGAACATGAGGTGGATATTCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGGGAAGAAGATGGTAGTAGTAGTAGAACTACTACTGTTACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTTCCTCTAATAACTCCTCAGAGATCACTATCACTGATAAAGAACATGTTGGTGAGGATTCTTGTTCAGGATTCATGGTTAATAATAGGCTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTGTTTGCTCTAAAACTTTCAATAGATATAACAACATGCAGGTAGCTATATCATTATCAACACACACACATACACACTCACCAAAGACCTTGTTCTTCTGTTTTGTTTCATCTTTCACACTTCCTTTATAATTCAAGGTTTAAAACAAAGAAAAATAAATTTCCATTGCTTCTGCTTCTGCTTCTGCTTCCCTTTTCTGTCAATAACTTTCTTCCTTGATTTGAACCATTAACGGTTCTCTGATGCTTGGATAGAAAGAGGAAAAGATTGTTTGTTAAACTTTGATGTACTTACTTGTCTTCCTCTTTCATTTCTTTCTTTTTGAAGAAGTTATGATTATTAGTTTAAAGTTTTTCACTTCTGCTTTTTTTTCCTTGACCTCTTTCCTTCTTTTTTCTTTCTTCAGAAATACTTGACCTCTTTCTTCTAGAGTTATAGCATATATTAATTTCATTGGATTTTTTAAATTTATTTTAAGAAATAATTTTGGGATAGCTAGTGTTAAATTTTGCATGGTTTTAAATAAACAACTATTCTTCTAGCTTTTCCTGATTCATATATACTGAGAGACTGGGATCAGTACCTTACTACACCTTTCCTTTTCTTTGATTGACTAAACTACTCAATCAATGTTCCTTATGCCTTTTACTACATTGAAATCTGTGCTACTTCTTTCTGTATTTTCCCACCTGTATAGAACAGAAATTTTTTCAGTGTTTCTTCCAGATCGATCATTAAAATAAATAAATAAAAAATTGTTCCTCTTTGTGGCTTCTTAGTCCAATCCAACCATGCTAATATACCATCCAAATTTGCCTTCTTTTTTCCATAGTTTAATTAAATTATATTCTGTTTTTTTAGCTAGAAGAAATTGCTAAGTGCTAACTATTTGACAAATTTATTTAGCAAAGAACATTTAGAGATAGAAAAATGTGGAATACATCTTTAAATTTGTCACAGATGTTTAAAGCCTGTTTGAAACACTTTCCAAAAACTCTTCTTTAGTTTTTAAAAACTTGTTTGCGAAACTATTTTTAAAATTACAGTTTTGGAAACTGTCTTCAATTTTTTAGTTTTGGGACTAAAAAACTAAAACATGTAAAAGAATAACCATTGTAAAAAGAAGACTTGTATATTTCAAAAACTATTTCAAACAGGCCCTTAGTAATCAATTTTATTTTTTTCTTCTCTAACTTTATTTCAACTTTTTGTGATAGTATTTTTATTAGCTGCAGTGTTAGCTACACTCCAAATTAAATCTTTGCCCTTCATGATTGTTCATTAATAATTTTTTAAATTATTTATTTTGAATATGCAATGATCGTGTCAGACCGACCTTATTATCAAGATCTACTGAATTTCAGTTTCAGTCTTTTCCAAAATAAAAATATTTATTTTGTATGTATAAACATTCACTGAGTTTGTAGTACAAATTTTGATCATTTTGCTTTGTTAACTTTATACTAAAATCTTTATAAGATTTTTTGTTTTGTTTTTATAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGCACACAACCAACAGGAATGCTAAGGCTACCTTGTTACTGTTGTGCACCAGGGTGCAGAAACAACATTGATCATCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCATTCATGTGTAGAAAATGTAGCAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTTAAACACAAGAGGTCTCTTAAAGATCATATCAAAGCTTTTGGAAGTGGACATGCTGCTTATGGGTGTGATGGATTTGAAGAAGAGGATGAACCAGCTTCTGAA
Protein sequence

>MS.gene04845.t1

MADNPYSNLFSSSSSFFQFNHIFPSSNSNPSPQNHHPFLHHHNNNNHTFFHYHHHISSSSPPSPPLREELPLLSLIPTKQEKYDEDQQEHEVDIQDLPCTAMDLEEREEDGSSSRTTTVTVALHIGLPNPSAAEMASVLSSSNNSSEITITDKEHVGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGCDGFEEEDEPASE