Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048473.t1 | XP_003590850.2 | 62.2 | 479 | 102 | 5 | 1 | 409 | 43 | 512 | 3.70E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048473.t1 | Q9LUZ4 | 41.4 | 485 | 191 | 12 | 6 | 403 | 30 | 508 | 1.6e-84 | 314.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048473.t1 | G7I4W5 | 62.2 | 479 | 102 | 5 | 1 | 409 | 43 | 512 | 2.7e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048473.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048473.t1 | MTR_1g075890 | 66.180 | 479 | 83 | 4 | 1 | 409 | 43 | 512 | 0.0 | 574 |
| MS.gene048473.t1 | MTR_3g464260 | 55.699 | 465 | 75 | 8 | 1 | 409 | 35 | 424 | 1.77e-151 | 440 |
| MS.gene048473.t1 | MTR_3g464280 | 59.028 | 432 | 124 | 8 | 6 | 410 | 32 | 437 | 7.05e-151 | 437 |
| MS.gene048473.t1 | MTR_5g071070 | 44.052 | 538 | 161 | 13 | 1 | 401 | 45 | 579 | 3.89e-126 | 380 |
| MS.gene048473.t1 | MTR_5g082830 | 40.727 | 523 | 184 | 14 | 2 | 401 | 41 | 560 | 3.11e-109 | 336 |
| MS.gene048473.t1 | MTR_5g071070 | 42.800 | 500 | 146 | 13 | 39 | 401 | 1 | 497 | 5.73e-108 | 331 |
| MS.gene048473.t1 | MTR_3g464290 | 56.269 | 327 | 107 | 9 | 107 | 409 | 56 | 370 | 2.55e-93 | 289 |
| MS.gene048473.t1 | MTR_7g092070 | 38.889 | 468 | 164 | 12 | 2 | 355 | 58 | 517 | 3.69e-93 | 296 |
| MS.gene048473.t1 | MTR_3g070880 | 39.738 | 458 | 154 | 13 | 2 | 401 | 21 | 414 | 1.50e-92 | 288 |
| MS.gene048473.t1 | MTR_3g464270 | 48.355 | 304 | 105 | 5 | 150 | 410 | 8 | 302 | 1.90e-80 | 252 |
| MS.gene048473.t1 | MTR_3g029590 | 33.333 | 453 | 174 | 13 | 14 | 348 | 68 | 510 | 2.34e-64 | 219 |
| MS.gene048473.t1 | MTR_1g050438 | 32.096 | 458 | 194 | 11 | 2 | 354 | 26 | 471 | 3.72e-61 | 208 |
| MS.gene048473.t1 | MTR_0728s0020 | 31.965 | 463 | 188 | 12 | 2 | 354 | 42 | 487 | 7.07e-61 | 208 |
| MS.gene048473.t1 | MTR_3g435590 | 35.588 | 340 | 130 | 7 | 16 | 271 | 57 | 391 | 1.33e-55 | 191 |
| MS.gene048473.t1 | MTR_3g435680 | 47.619 | 147 | 41 | 2 | 128 | 240 | 130 | 274 | 2.06e-40 | 148 |
| MS.gene048473.t1 | MTR_8g102100 | 33.333 | 228 | 100 | 5 | 84 | 271 | 26 | 241 | 2.03e-30 | 120 |
| MS.gene048473.t1 | MTR_6g090380 | 66.667 | 69 | 23 | 0 | 147 | 215 | 99 | 167 | 6.89e-30 | 119 |
| MS.gene048473.t1 | MTR_3g103960 | 55.056 | 89 | 30 | 2 | 128 | 215 | 39 | 118 | 7.83e-28 | 111 |
| MS.gene048473.t1 | MTR_2g090605 | 60.000 | 65 | 26 | 0 | 151 | 215 | 77 | 141 | 1.28e-25 | 108 |
| MS.gene048473.t1 | MTR_4g078660 | 55.072 | 69 | 31 | 0 | 147 | 215 | 56 | 124 | 8.54e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048473.t1 | AT5G58620 | 43.852 | 488 | 171 | 15 | 6 | 401 | 30 | 506 | 1.91e-109 | 335 |
| MS.gene048473.t1 | AT2G40140 | 45.154 | 423 | 153 | 11 | 5 | 371 | 48 | 447 | 3.04e-103 | 318 |
| MS.gene048473.t1 | AT2G40140 | 45.154 | 423 | 153 | 11 | 5 | 371 | 48 | 447 | 3.04e-103 | 318 |
| MS.gene048473.t1 | AT3G55980 | 42.459 | 431 | 150 | 14 | 2 | 367 | 41 | 438 | 1.72e-92 | 290 |
| MS.gene048473.t1 | AT3G55980 | 42.459 | 431 | 150 | 14 | 2 | 367 | 108 | 505 | 9.87e-92 | 290 |
| MS.gene048473.t1 | AT2G41900 | 39.013 | 446 | 160 | 11 | 7 | 354 | 64 | 495 | 1.84e-88 | 283 |
| MS.gene048473.t1 | AT5G12850 | 45.126 | 277 | 96 | 9 | 128 | 355 | 234 | 503 | 1.18e-65 | 223 |
| MS.gene048473.t1 | AT5G12850 | 48.101 | 79 | 41 | 0 | 14 | 92 | 64 | 142 | 2.58e-18 | 87.8 |
| MS.gene048473.t1 | AT5G07500 | 57.831 | 83 | 35 | 0 | 133 | 215 | 34 | 116 | 6.12e-31 | 119 |
| MS.gene048473.t1 | AT4G29190 | 60.714 | 84 | 24 | 1 | 132 | 215 | 69 | 143 | 6.43e-30 | 119 |
| MS.gene048473.t1 | AT2G25900 | 62.319 | 69 | 26 | 0 | 147 | 215 | 86 | 154 | 3.24e-29 | 116 |
| MS.gene048473.t1 | AT2G25900 | 62.319 | 69 | 26 | 0 | 147 | 215 | 86 | 154 | 3.24e-29 | 116 |
| MS.gene048473.t1 | AT2G19810 | 57.500 | 80 | 34 | 0 | 136 | 215 | 63 | 142 | 2.38e-28 | 115 |
| MS.gene048473.t1 | AT1G03790 | 47.475 | 99 | 47 | 2 | 118 | 215 | 53 | 147 | 3.20e-25 | 106 |
| MS.gene048473.t1 | AT5G44260 | 51.111 | 90 | 39 | 2 | 127 | 215 | 40 | 125 | 1.26e-24 | 104 |
Find 114 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCTGTTTC+TGG | 0.098846 | 3.3:+51832550 | MS.gene048473:CDS |
| CTTATGGTTTCTGCCTTATT+TGG | 0.186884 | 3.3:+51832448 | MS.gene048473:CDS |
| CTTACCAATTCAAATGTTAT+TGG | 0.199131 | 3.3:+51833637 | MS.gene048473:CDS |
| TTCACAGATGTTGTTGAAAA+AGG | 0.211504 | 3.3:+51832343 | MS.gene048473:CDS |
| GGTGTCCTGTCTTATATTAT+TGG | 0.263939 | 3.3:+51832478 | MS.gene048473:CDS |
| TCCCTTCCTGAGATAAATAA+TGG | 0.281745 | 3.3:+51832824 | MS.gene048473:CDS |
| GACACCCTTGCTTCCAAATA+AGG | 0.305473 | 3.3:-51832461 | None:intergenic |
| GTGTCCCTTGCCCCGACTTT+CGG | 0.317518 | 3.3:+51832993 | MS.gene048473:CDS |
| CAAGGGCTTATTCTCATGAT+TGG | 0.318225 | 3.3:+51832900 | MS.gene048473:CDS |
| TATATAGTACAAATGAATTT+AGG | 0.321742 | 3.3:+51832849 | MS.gene048473:CDS |
| TCTCCTTCAAATAGGCTTGC+AGG | 0.328651 | 3.3:+51833505 | MS.gene048473:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.347611 | 3.3:+51832432 | MS.gene048473:CDS |
| GTCTTTCATCTCCTTCAAAT+AGG | 0.348830 | 3.3:+51833497 | MS.gene048473:CDS |
| GAGGGTTGGATCGAAGGAAA+TGG | 0.360734 | 3.3:+51832405 | MS.gene048473:CDS |
| CTTGTAGCAGCTCCACCATT+TGG | 0.370368 | 3.3:-51832754 | None:intergenic |
| TTTCTTGGCATCTGAAGAGC+TGG | 0.379566 | 3.3:-51833379 | None:intergenic |
| CATGATCCCTTCCGAAAGTC+GGG | 0.387890 | 3.3:-51833004 | None:intergenic |
| TGATCCAATAACATTTGAAT+TGG | 0.388637 | 3.3:-51833641 | None:intergenic |
| AAGGATGGCCCCAGAGTTGA+TGG | 0.411927 | 3.3:-51833609 | None:intergenic |
| CTGTCTTATATTATTGGAAC+CGG | 0.413608 | 3.3:+51832484 | MS.gene048473:CDS |
| TGACACTGACAATATTCTTA+AGG | 0.414329 | 3.3:+51832721 | MS.gene048473:CDS |
| AGGGTTGGATCGAAGGAAAT+GGG | 0.426387 | 3.3:+51832406 | MS.gene048473:CDS |
| TTCTGCCTTATTTGGAAGCA+AGG | 0.427911 | 3.3:+51832456 | MS.gene048473:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 3.3:+51832882 | MS.gene048473:CDS |
| GACAATATTCTTAAGGAAGC+AGG | 0.436071 | 3.3:+51832728 | MS.gene048473:CDS |
| TTGTGCTACCTCACTTGCTA+TGG | 0.437333 | 3.3:+51833742 | MS.gene048473:CDS |
| TATATCCCATTATTTATCTC+AGG | 0.446350 | 3.3:-51832830 | None:intergenic |
| CCCTTCCTGAGATAAATAAT+GGG | 0.448156 | 3.3:+51832825 | MS.gene048473:CDS |
| CCGTCATTAACTTCCGCATA+AGG | 0.448177 | 3.3:-51833462 | None:intergenic |
| GAGTGTCCCTTTGTTCATCC+AGG | 0.455762 | 3.3:+51832926 | MS.gene048473:CDS |
| ACTCCTGCAAGCCTATTTGA+AGG | 0.456472 | 3.3:-51833508 | None:intergenic |
| TTCACCTAGTTCTTCTTCAT+CGG | 0.461261 | 3.3:+51833225 | MS.gene048473:CDS |
| TTGCTTGATGCATCTACAAA+TGG | 0.463232 | 3.3:+51832607 | MS.gene048473:CDS |
| TTATGGTATGGAAGGAGGGT+TGG | 0.464678 | 3.3:+51832391 | MS.gene048473:CDS |
| CAGGTATAATGATATTTCCT+TGG | 0.467024 | 3.3:-51832971 | None:intergenic |
| TGGAAGGAGGGTTGGATCGA+AGG | 0.473211 | 3.3:+51832399 | MS.gene048473:CDS |
| CCGAGTATGCGGCTCAGATA+AGG | 0.487863 | 3.3:+51832522 | MS.gene048473:CDS |
| CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 3.3:+51833169 | MS.gene048473:CDS |
| AGAACACGAACCATCAACTC+TGG | 0.495455 | 3.3:+51833599 | MS.gene048473:CDS |
| CCCTTGCCCCGACTTTCGGA+AGG | 0.498336 | 3.3:+51832997 | MS.gene048473:CDS |
| CCCTTCCGAAAGTCGGGGCA+AGG | 0.501706 | 3.3:-51832998 | None:intergenic |
| AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | 3.3:-51833188 | None:intergenic |
| TTCTTGGCATCTGAAGAGCT+GGG | 0.503638 | 3.3:-51833378 | None:intergenic |
| GCATGATCCCTTCCGAAAGT+CGG | 0.505621 | 3.3:-51833005 | None:intergenic |
| CCTTATCTGAGCCGCATACT+CGG | 0.510920 | 3.3:-51832522 | None:intergenic |
| GCAGCATCATTGCCTACGGC+TGG | 0.514430 | 3.3:+51833316 | MS.gene048473:CDS |
| TTTGAATTGGTAAGATCAGA+AGG | 0.516770 | 3.3:-51833628 | None:intergenic |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 3.3:+51832883 | MS.gene048473:CDS |
| CTTGATAACCTCAGCAGAAG+TGG | 0.528251 | 3.3:-51832581 | None:intergenic |
| TAGGGTTATGGTATGGAAGG+AGG | 0.528404 | 3.3:+51832386 | MS.gene048473:CDS |
| TCAGGAAGGGATCGATCAAT+CGG | 0.528745 | 3.3:-51832812 | None:intergenic |
| AATAAGGCAGAAACCATAAG+AGG | 0.534423 | 3.3:-51832445 | None:intergenic |
| AAAGTCGGGGCAAGGGACAC+AGG | 0.535861 | 3.3:-51832990 | None:intergenic |
| AGGGTTATGGTATGGAAGGA+GGG | 0.536148 | 3.3:+51832387 | MS.gene048473:CDS |
| TAAGGAAGCAGGTTTCCAAA+TGG | 0.540705 | 3.3:+51832739 | MS.gene048473:CDS |
| TCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | 3.3:+51832457 | MS.gene048473:CDS |
| CCCATTATTTATCTCAGGAA+GGG | 0.543475 | 3.3:-51832825 | None:intergenic |
| ATGCAAAGCGCCGTGATCCA+AGG | 0.543626 | 3.3:+51832954 | MS.gene048473:CDS |
| AACATGATGTTGATGAGGTA+GGG | 0.544918 | 3.3:+51832368 | MS.gene048473:CDS |
| TCGGTTAACATCTACACGTC+CGG | 0.548216 | 3.3:-51832503 | None:intergenic |
| ATGTTGATGAGGTAGGGTTA+TGG | 0.554961 | 3.3:+51832374 | MS.gene048473:CDS |
| GCAGATGGAGTCAAAGGTGG+CGG | 0.558024 | 3.3:-51833295 | None:intergenic |
| TCCCATTATTTATCTCAGGA+AGG | 0.558706 | 3.3:-51832826 | None:intergenic |
| GGTGAATTCGAATATGATGT+AGG | 0.560129 | 3.3:-51833208 | None:intergenic |
| GGAAGCAGGTTTCCAAATGG+TGG | 0.560340 | 3.3:+51832742 | MS.gene048473:CDS |
| GGACTTAAAGCTTGCCACGC+TGG | 0.562068 | 3.3:-51833719 | None:intergenic |
| GAACACGAACCATCAACTCT+GGG | 0.564440 | 3.3:+51833600 | MS.gene048473:CDS |
| CGGTTCCAATAATATAAGAC+AGG | 0.566934 | 3.3:-51832483 | None:intergenic |
| AATGATATTTCCTTGGATCA+CGG | 0.568390 | 3.3:-51832964 | None:intergenic |
| GTGGAGCTGCTACAAGATGC+AGG | 0.572446 | 3.3:+51832761 | MS.gene048473:CDS |
| GAACATGATGTTGATGAGGT+AGG | 0.574038 | 3.3:+51832367 | MS.gene048473:CDS |
| TTCGAATATGATGTAGGTGA+AGG | 0.575873 | 3.3:-51833202 | None:intergenic |
| CGGAAGGGATCATGCAGCAA+AGG | 0.575933 | 3.3:+51833013 | MS.gene048473:CDS |
| AGTGTCCCTTTGTTCATCCA+GGG | 0.576667 | 3.3:+51832927 | MS.gene048473:CDS |
| TTGTTCTGCCACTTCTGCTG+AGG | 0.578024 | 3.3:+51832573 | MS.gene048473:CDS |
| CCTTGCCCCGACTTTCGGAA+GGG | 0.578605 | 3.3:+51832998 | MS.gene048473:CDS |
| ATCTGCAGCATCATTGCCTA+CGG | 0.579402 | 3.3:+51833312 | MS.gene048473:CDS |
| GCTCTCGCTCCGCTTTGTGA+TGG | 0.581388 | 3.3:-51833683 | None:intergenic |
| GTAGGCAATGATGCTGCAGA+TGG | 0.582817 | 3.3:-51833310 | None:intergenic |
| TAATCTTTCTTCTCAGTGTG+AGG | 0.583800 | 3.3:-51832788 | None:intergenic |
| AGAAGAATCCATAGCAAGTG+AGG | 0.583861 | 3.3:-51833750 | None:intergenic |
| GGCCACATGGTTCCAGCCGT+AGG | 0.590587 | 3.3:-51833328 | None:intergenic |
| CTTATGCGGAAGTTAATGAC+GGG | 0.596514 | 3.3:+51833463 | MS.gene048473:CDS |
| CCGAGTCTGAGTCGGCCACA+TGG | 0.598478 | 3.3:-51833341 | None:intergenic |
| AGGTAGGGTTATGGTATGGA+AGG | 0.598568 | 3.3:+51832383 | MS.gene048473:CDS |
| CCTTCCGAAAGTCGGGGCAA+GGG | 0.599933 | 3.3:-51832997 | None:intergenic |
| AATTGGTAAGATCAGAAGGA+TGG | 0.601269 | 3.3:-51833624 | None:intergenic |
| CCTTATGCGGAAGTTAATGA+CGG | 0.602861 | 3.3:+51833462 | MS.gene048473:CDS |
| GATGAGGTAGGGTTATGGTA+TGG | 0.604921 | 3.3:+51832379 | MS.gene048473:CDS |
| GCGGAAGTTAATGACGGGAG+AGG | 0.608895 | 3.3:+51833468 | MS.gene048473:CDS |
| GTGTTCTGATGCGACTGCAT+TGG | 0.609359 | 3.3:-51833583 | None:intergenic |
| TAATCCGATGAAGAAGAACT+AGG | 0.616056 | 3.3:-51833229 | None:intergenic |
| AGGCGAACATGATGTTGATG+AGG | 0.616849 | 3.3:+51832363 | MS.gene048473:CDS |
| TGGATGAACAAAGGGACACT+CGG | 0.617153 | 3.3:-51832924 | None:intergenic |
| CCATGTGGCCGACTCAGACT+CGG | 0.618450 | 3.3:+51833341 | MS.gene048473:CDS |
| TGATGCGACTGCATTGGTGT+CGG | 0.622152 | 3.3:-51833577 | None:intergenic |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 3.3:-51832893 | None:intergenic |
| GCAGATTGTGTCAAATAAGA+CGG | 0.628556 | 3.3:-51833268 | None:intergenic |
| AACATGAAAATCTCCTTATG+CGG | 0.633353 | 3.3:+51833449 | MS.gene048473:CDS |
| GTGTCCCTTTGTTCATCCAG+GGG | 0.633464 | 3.3:+51832928 | MS.gene048473:CDS |
| GATGCTGCAGATGGAGTCAA+AGG | 0.643097 | 3.3:-51833301 | None:intergenic |
| GTATGAAGCCGAGTCTGAGT+CGG | 0.648321 | 3.3:-51833349 | None:intergenic |
| AGGAAATGGGATATGAAGAG+AGG | 0.649200 | 3.3:+51832419 | MS.gene048473:CDS |
| CTTTATTGAGCGCACCAGCG+TGG | 0.660917 | 3.3:+51833705 | MS.gene048473:CDS |
| GTAGATGTTAACCGAGTATG+CGG | 0.662417 | 3.3:+51832511 | MS.gene048473:CDS |
| ATGATCCCTTCCGAAAGTCG+GGG | 0.672164 | 3.3:-51833003 | None:intergenic |
| TGCCTACGGCTGGAACCATG+TGG | 0.681407 | 3.3:+51833326 | MS.gene048473:CDS |
| GCTGCAGATGGAGTCAAAGG+TGG | 0.696337 | 3.3:-51833298 | None:intergenic |
| ATGGCATCAACTCTTAATTG+TGG | 0.699766 | 3.3:-51833664 | None:intergenic |
| ATAGCAAGTGAGGTAGCACA+AGG | 0.724605 | 3.3:-51833740 | None:intergenic |
| GAGTTGATGCCATCACAAAG+CGG | 0.725373 | 3.3:+51833674 | MS.gene048473:CDS |
| AACACGAACCATCAACTCTG+GGG | 0.734391 | 3.3:+51833601 | MS.gene048473:CDS |
| GATGCTTGTGAATATGCACA+TGG | 0.757069 | 3.3:+51833037 | MS.gene048473:CDS |
| GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 3.3:-51833172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTACAAATGAATTT+AGG | + | chr3.3:51832849-51832868 | MS.gene048473:CDS | 15.0% |
| ! | CTTACCAATTCAAATGTTAT+TGG | + | chr3.3:51833637-51833656 | MS.gene048473:CDS | 25.0% |
| ! | TATATCCCATTATTTATCTC+AGG | - | chr3.3:51832833-51832852 | None:intergenic | 25.0% |
| ! | TGATCCAATAACATTTGAAT+TGG | - | chr3.3:51833644-51833663 | None:intergenic | 25.0% |
| !!! | CACATGGTATTTTTTAATGT+TGG | + | chr3.3:51833053-51833072 | MS.gene048473:intron | 25.0% |
| AACATAAAAGTCATCTTCAC+TGG | - | chr3.3:51832699-51832718 | None:intergenic | 30.0% | |
| AACATGAAAATCTCCTTATG+CGG | + | chr3.3:51833449-51833468 | MS.gene048473:CDS | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3.3:51832967-51832986 | None:intergenic | 30.0% | |
| CAGGTATAATGATATTTCCT+TGG | - | chr3.3:51832974-51832993 | None:intergenic | 30.0% | |
| CTGTCTTATATTATTGGAAC+CGG | + | chr3.3:51832484-51832503 | MS.gene048473:CDS | 30.0% | |
| TGACACTGACAATATTCTTA+AGG | + | chr3.3:51832721-51832740 | MS.gene048473:CDS | 30.0% | |
| TTCACAGATGTTGTTGAAAA+AGG | + | chr3.3:51832343-51832362 | MS.gene048473:CDS | 30.0% | |
| TTTGAATTGGTAAGATCAGA+AGG | - | chr3.3:51833631-51833650 | None:intergenic | 30.0% | |
| ! | CTAACCTTGAAAACATTTTC+GGG | + | chr3.3:51833539-51833558 | MS.gene048473:CDS | 30.0% |
| ! | GCTAACCTTGAAAACATTTT+CGG | + | chr3.3:51833538-51833557 | MS.gene048473:CDS | 30.0% |
| ! | TCGGTGTCTAATAATATCTT+CGG | + | chr3.3:51832668-51832687 | MS.gene048473:intron | 30.0% |
| !! | AAAATGTTTTCAAGGTTAGC+GGG | - | chr3.3:51833538-51833557 | None:intergenic | 30.0% |
| !! | GAAAATGTTTTCAAGGTTAG+CGG | - | chr3.3:51833539-51833558 | None:intergenic | 30.0% |
| AATAAGGCAGAAACCATAAG+AGG | - | chr3.3:51832448-51832467 | None:intergenic | 35.0% | |
| AATTGGTAAGATCAGAAGGA+TGG | - | chr3.3:51833627-51833646 | None:intergenic | 35.0% | |
| ATGGCATCAACTCTTAATTG+TGG | - | chr3.3:51833667-51833686 | None:intergenic | 35.0% | |
| CCCATTATTTATCTCAGGAA+GGG | - | chr3.3:51832828-51832847 | None:intergenic | 35.0% | |
| CCCTTCCTGAGATAAATAAT+GGG | + | chr3.3:51832825-51832844 | MS.gene048473:CDS | 35.0% | |
| CGGTTCCAATAATATAAGAC+AGG | - | chr3.3:51832486-51832505 | None:intergenic | 35.0% | |
| GACAATATTCTTAAGGAAGC+AGG | + | chr3.3:51832728-51832747 | MS.gene048473:CDS | 35.0% | |
| GCAGATTGTGTCAAATAAGA+CGG | - | chr3.3:51833271-51833290 | None:intergenic | 35.0% | |
| GGTGAATTCGAATATGATGT+AGG | - | chr3.3:51833211-51833230 | None:intergenic | 35.0% | |
| GGTGTCCTGTCTTATATTAT+TGG | + | chr3.3:51832478-51832497 | MS.gene048473:CDS | 35.0% | |
| GTCTTTCATCTCCTTCAAAT+AGG | + | chr3.3:51833497-51833516 | MS.gene048473:CDS | 35.0% | |
| TAATCCGATGAAGAAGAACT+AGG | - | chr3.3:51833232-51833251 | None:intergenic | 35.0% | |
| TAATCTTTCTTCTCAGTGTG+AGG | - | chr3.3:51832791-51832810 | None:intergenic | 35.0% | |
| TCCCATTATTTATCTCAGGA+AGG | - | chr3.3:51832829-51832848 | None:intergenic | 35.0% | |
| TCCCTTCCTGAGATAAATAA+TGG | + | chr3.3:51832824-51832843 | MS.gene048473:CDS | 35.0% | |
| TTCGAATATGATGTAGGTGA+AGG | - | chr3.3:51833205-51833224 | None:intergenic | 35.0% | |
| TTGCTTGATGCATCTACAAA+TGG | + | chr3.3:51832607-51832626 | MS.gene048473:CDS | 35.0% | |
| ! | AACATGATGTTGATGAGGTA+GGG | + | chr3.3:51832368-51832387 | MS.gene048473:CDS | 35.0% |
| ! | ATGACCCGAAAATGTTTTCA+AGG | - | chr3.3:51833546-51833565 | None:intergenic | 35.0% |
| ! | CTTATGGTTTCTGCCTTATT+TGG | + | chr3.3:51832448-51832467 | MS.gene048473:CDS | 35.0% |
| ! | TTCACCTAGTTCTTCTTCAT+CGG | + | chr3.3:51833225-51833244 | MS.gene048473:CDS | 35.0% |
| !! | GCAGTTTTCAATCTGTTTCT+TGG | - | chr3.3:51833397-51833416 | None:intergenic | 35.0% |
| AGAAGAATCCATAGCAAGTG+AGG | - | chr3.3:51833753-51833772 | None:intergenic | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3.3:51832419-51832438 | MS.gene048473:CDS | 40.0% | |
| ATACAGAACAAGGCTTTGCA+CGG | + | chr3.3:51833090-51833109 | MS.gene048473:intron | 40.0% | |
| ATCCTGCTCAATACAGAACA+AGG | + | chr3.3:51833080-51833099 | MS.gene048473:intron | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3.3:51832900-51832919 | MS.gene048473:CDS | 40.0% | |
| CCTTATGCGGAAGTTAATGA+CGG | + | chr3.3:51833462-51833481 | MS.gene048473:CDS | 40.0% | |
| CTTATGCGGAAGTTAATGAC+GGG | + | chr3.3:51833463-51833482 | MS.gene048473:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | + | chr3.3:51833037-51833056 | MS.gene048473:CDS | 40.0% | |
| GTAGATGTTAACCGAGTATG+CGG | + | chr3.3:51832511-51832530 | MS.gene048473:CDS | 40.0% | |
| TAAGGAAGCAGGTTTCCAAA+TGG | + | chr3.3:51832739-51832758 | MS.gene048473:CDS | 40.0% | |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3.3:51832896-51832915 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGTAGGGTTA+TGG | + | chr3.3:51832374-51832393 | MS.gene048473:CDS | 40.0% |
| ! | ATTTTCCCCTGGATGAACAA+AGG | - | chr3.3:51832936-51832955 | None:intergenic | 40.0% |
| ! | GAACATGATGTTGATGAGGT+AGG | + | chr3.3:51832367-51832386 | MS.gene048473:CDS | 40.0% |
| ! | TTTTCCCCTGGATGAACAAA+GGG | - | chr3.3:51832935-51832954 | None:intergenic | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3.3:51832883-51832902 | MS.gene048473:CDS | 40.0% |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3.3:51832882-51832901 | MS.gene048473:CDS | 40.0% |
| !! | TCTGCCTTATTTGGAAGCAA+GGG | + | chr3.3:51832457-51832476 | MS.gene048473:CDS | 40.0% |
| !! | TTCTGCCTTATTTGGAAGCA+AGG | + | chr3.3:51832456-51832475 | MS.gene048473:CDS | 40.0% |
| AACACGAACCATCAACTCTG+GGG | + | chr3.3:51833601-51833620 | MS.gene048473:CDS | 45.0% | |
| ACTCCTGCAAGCCTATTTGA+AGG | - | chr3.3:51833511-51833530 | None:intergenic | 45.0% | |
| AGAACACGAACCATCAACTC+TGG | + | chr3.3:51833599-51833618 | MS.gene048473:CDS | 45.0% | |
| AGACACCGAGACAATCAAAC+CGG | - | chr3.3:51832657-51832676 | None:intergenic | 45.0% | |
| AGGCGAACATGATGTTGATG+AGG | + | chr3.3:51832363-51832382 | MS.gene048473:CDS | 45.0% | |
| AGGGTTATGGTATGGAAGGA+GGG | + | chr3.3:51832387-51832406 | MS.gene048473:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3.3:51832406-51832425 | MS.gene048473:CDS | 45.0% | |
| AGGTAGGGTTATGGTATGGA+AGG | + | chr3.3:51832383-51832402 | MS.gene048473:CDS | 45.0% | |
| AGTGTCCCTTTGTTCATCCA+GGG | + | chr3.3:51832927-51832946 | MS.gene048473:CDS | 45.0% | |
| ATAGCAAGTGAGGTAGCACA+AGG | - | chr3.3:51833743-51833762 | None:intergenic | 45.0% | |
| ATCTGCAGCATCATTGCCTA+CGG | + | chr3.3:51833312-51833331 | MS.gene048473:CDS | 45.0% | |
| CCGTCATTAACTTCCGCATA+AGG | - | chr3.3:51833465-51833484 | None:intergenic | 45.0% | |
| GAACACGAACCATCAACTCT+GGG | + | chr3.3:51833600-51833619 | MS.gene048473:CDS | 45.0% | |
| GACACCCTTGCTTCCAAATA+AGG | - | chr3.3:51832464-51832483 | None:intergenic | 45.0% | |
| GATGAGGTAGGGTTATGGTA+TGG | + | chr3.3:51832379-51832398 | MS.gene048473:CDS | 45.0% | |
| TAGGGTTATGGTATGGAAGG+AGG | + | chr3.3:51832386-51832405 | MS.gene048473:CDS | 45.0% | |
| TCAGGAAGGGATCGATCAAT+CGG | - | chr3.3:51832815-51832834 | None:intergenic | 45.0% | |
| TCGGTTAACATCTACACGTC+CGG | - | chr3.3:51832506-51832525 | None:intergenic | 45.0% | |
| TCTCCTTCAAATAGGCTTGC+AGG | + | chr3.3:51833505-51833524 | MS.gene048473:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3.3:51832432-51832451 | MS.gene048473:CDS | 45.0% | |
| TGGATGAACAAAGGGACACT+CGG | - | chr3.3:51832927-51832946 | None:intergenic | 45.0% | |
| TTATGGTATGGAAGGAGGGT+TGG | + | chr3.3:51832391-51832410 | MS.gene048473:CDS | 45.0% | |
| TTCTTGGCATCTGAAGAGCT+GGG | - | chr3.3:51833381-51833400 | None:intergenic | 45.0% | |
| TTTCTTGGCATCTGAAGAGC+TGG | - | chr3.3:51833382-51833401 | None:intergenic | 45.0% | |
| ! | CTTGATAACCTCAGCAGAAG+TGG | - | chr3.3:51832584-51832603 | None:intergenic | 45.0% |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | chr3.3:51833175-51833194 | None:intergenic | 45.0% |
| ! | GGTAGTTCTGTTGTTGCGAA+TGG | + | chr3.3:51832628-51832647 | MS.gene048473:intron | 45.0% |
| ! | TTGTGCTACCTCACTTGCTA+TGG | + | chr3.3:51833742-51833761 | MS.gene048473:CDS | 45.0% |
| !! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr3.3:51833085-51833104 | None:intergenic | 45.0% |
| !! | GAGTTGATGCCATCACAAAG+CGG | + | chr3.3:51833674-51833693 | MS.gene048473:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | chr3.3:51832550-51832569 | MS.gene048473:CDS | 45.0% |
| AGAACAAGGCTTTGCACGGA+TGG | + | chr3.3:51833094-51833113 | MS.gene048473:intron | 50.0% | |
| AGGCTTTGCACGGATGGAAT+CGG | + | chr3.3:51833100-51833119 | MS.gene048473:intron | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | chr3.3:51833191-51833210 | None:intergenic | 50.0% | |
| ATGATCCCTTCCGAAAGTCG+GGG | - | chr3.3:51833006-51833025 | None:intergenic | 50.0% | |
| CATGATCCCTTCCGAAAGTC+GGG | - | chr3.3:51833007-51833026 | None:intergenic | 50.0% | |
| CCTTATCTGAGCCGCATACT+CGG | - | chr3.3:51832525-51832544 | None:intergenic | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | chr3.3:51833169-51833188 | MS.gene048473:CDS | 50.0% | |
| CTGTTGTTGCGAATGGCAAC+CGG | + | chr3.3:51832635-51832654 | MS.gene048473:intron | 50.0% | |
| CTTGTAGCAGCTCCACCATT+TGG | - | chr3.3:51832757-51832776 | None:intergenic | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3.3:51832405-51832424 | MS.gene048473:CDS | 50.0% | |
| GAGTGTCCCTTTGTTCATCC+AGG | + | chr3.3:51832926-51832945 | MS.gene048473:CDS | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | chr3.3:51833304-51833323 | None:intergenic | 50.0% | |
| GCATGATCCCTTCCGAAAGT+CGG | - | chr3.3:51833008-51833027 | None:intergenic | 50.0% | |
| GGAAGCAGGTTTCCAAATGG+TGG | + | chr3.3:51832742-51832761 | MS.gene048473:CDS | 50.0% | |
| GTAGGCAATGATGCTGCAGA+TGG | - | chr3.3:51833313-51833332 | None:intergenic | 50.0% | |
| GTATGAAGCCGAGTCTGAGT+CGG | - | chr3.3:51833352-51833371 | None:intergenic | 50.0% | |
| GTGTCCCTTTGTTCATCCAG+GGG | + | chr3.3:51832928-51832947 | MS.gene048473:CDS | 50.0% | |
| GTGTTCTGATGCGACTGCAT+TGG | - | chr3.3:51833586-51833605 | None:intergenic | 50.0% | |
| TACAACGGTCGAAGCTCATC+TGG | - | chr3.3:51833160-51833179 | None:intergenic | 50.0% | |
| ! | TGATGCGACTGCATTGGTGT+CGG | - | chr3.3:51833580-51833599 | None:intergenic | 50.0% |
| ! | TTGTTCTGCCACTTCTGCTG+AGG | + | chr3.3:51832573-51832592 | MS.gene048473:CDS | 50.0% |
| !! | GGCAACCGGTTTGATTGTCT+CGG | + | chr3.3:51832649-51832668 | MS.gene048473:intron | 50.0% |
| AAGGATGGCCCCAGAGTTGA+TGG | - | chr3.3:51833612-51833631 | None:intergenic | 55.0% | |
| ATGGAATCGGGCGTACAAGG+AGG | + | chr3.3:51833113-51833132 | MS.gene048473:intron | 55.0% | |
| CCGAGTATGCGGCTCAGATA+AGG | + | chr3.3:51832522-51832541 | MS.gene048473:CDS | 55.0% | |
| CGGAAGGGATCATGCAGCAA+AGG | + | chr3.3:51833013-51833032 | MS.gene048473:CDS | 55.0% | |
| CTTTATTGAGCGCACCAGCG+TGG | + | chr3.3:51833705-51833724 | MS.gene048473:CDS | 55.0% | |
| GCAGATGGAGTCAAAGGTGG+CGG | - | chr3.3:51833298-51833317 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | chr3.3:51833301-51833320 | None:intergenic | 55.0% | |
| GGACTTAAAGCTTGCCACGC+TGG | - | chr3.3:51833722-51833741 | None:intergenic | 55.0% | |
| GGCTTTGCACGGATGGAATC+GGG | + | chr3.3:51833101-51833120 | MS.gene048473:intron | 55.0% | |
| GTGGAGCTGCTACAAGATGC+AGG | + | chr3.3:51832761-51832780 | MS.gene048473:CDS | 55.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3.3:51832399-51832418 | MS.gene048473:CDS | 55.0% | |
| TGGAATCGGGCGTACAAGGA+GGG | + | chr3.3:51833114-51833133 | MS.gene048473:intron | 55.0% | |
| ! | GCGGAAGTTAATGACGGGAG+AGG | + | chr3.3:51833468-51833487 | MS.gene048473:CDS | 55.0% |
| !! | ATGCAAAGCGCCGTGATCCA+AGG | + | chr3.3:51832954-51832973 | MS.gene048473:CDS | 55.0% |
| AAAGTCGGGGCAAGGGACAC+AGG | - | chr3.3:51832993-51833012 | None:intergenic | 60.0% | |
| CCTTCCGAAAGTCGGGGCAA+GGG | - | chr3.3:51833000-51833019 | None:intergenic | 60.0% | |
| CCTTGCCCCGACTTTCGGAA+GGG | + | chr3.3:51832998-51833017 | MS.gene048473:CDS | 60.0% | |
| CGGATGGAATCGGGCGTACA+AGG | + | chr3.3:51833110-51833129 | MS.gene048473:intron | 60.0% | |
| GCAGCATCATTGCCTACGGC+TGG | + | chr3.3:51833316-51833335 | MS.gene048473:CDS | 60.0% | |
| GCTCTCGCTCCGCTTTGTGA+TGG | - | chr3.3:51833686-51833705 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGACTTT+CGG | + | chr3.3:51832993-51833012 | MS.gene048473:CDS | 60.0% | |
| TGCCTACGGCTGGAACCATG+TGG | + | chr3.3:51833326-51833345 | MS.gene048473:CDS | 60.0% | |
| ! | CCATGTGGCCGACTCAGACT+CGG | + | chr3.3:51833341-51833360 | MS.gene048473:CDS | 60.0% |
| ! | CGGCGCTTTGCATTTTCCCC+TGG | - | chr3.3:51832947-51832966 | None:intergenic | 60.0% |
| CCCTTCCGAAAGTCGGGGCA+AGG | - | chr3.3:51833001-51833020 | None:intergenic | 65.0% | |
| CCCTTGCCCCGACTTTCGGA+AGG | + | chr3.3:51832997-51833016 | MS.gene048473:CDS | 65.0% | |
| CCGAGTCTGAGTCGGCCACA+TGG | - | chr3.3:51833344-51833363 | None:intergenic | 65.0% | |
| GGCCACATGGTTCCAGCCGT+AGG | - | chr3.3:51833331-51833350 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 51832337 | 51833774 | 51832337 | ID=MS.gene048473 |
| chr3.3 | mRNA | 51832337 | 51833774 | 51832337 | ID=MS.gene048473.t1;Parent=MS.gene048473 |
| chr3.3 | exon | 51832337 | 51832628 | 51832337 | ID=MS.gene048473.t1.exon1;Parent=MS.gene048473.t1 |
| chr3.3 | CDS | 51832337 | 51832628 | 51832337 | ID=cds.MS.gene048473.t1;Parent=MS.gene048473.t1 |
| chr3.3 | exon | 51832705 | 51833058 | 51832705 | ID=MS.gene048473.t1.exon2;Parent=MS.gene048473.t1 |
| chr3.3 | CDS | 51832705 | 51833058 | 51832705 | ID=cds.MS.gene048473.t1;Parent=MS.gene048473.t1 |
| chr3.3 | exon | 51833161 | 51833774 | 51833161 | ID=MS.gene048473.t1.exon3;Parent=MS.gene048473.t1 |
| chr3.3 | CDS | 51833161 | 51833774 | 51833161 | ID=cds.MS.gene048473.t1;Parent=MS.gene048473.t1 |
| Gene Sequence |
| Protein sequence |
