Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048520.t1 | XP_013460322.1 | 76.3 | 388 | 7 | 2 | 1 | 303 | 1 | 388 | 3.30E-160 | 574.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048520.t1 | O64815 | 37.6 | 412 | 134 | 10 | 8 | 302 | 7 | 412 | 6.7e-61 | 235.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048520.t1 | A0A072UZ42 | 76.3 | 388 | 7 | 2 | 1 | 303 | 1 | 388 | 2.4e-160 | 574.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048520.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048520.t1 | MTR_3g465010 | 76.289 | 388 | 7 | 3 | 1 | 303 | 1 | 388 | 0.0 | 570 |
| MS.gene048520.t1 | MTR_4g095700 | 39.155 | 355 | 130 | 9 | 30 | 302 | 60 | 410 | 2.60e-67 | 216 |
| MS.gene048520.t1 | MTR_5g015810 | 35.859 | 396 | 151 | 9 | 8 | 303 | 11 | 403 | 1.70e-63 | 206 |
| MS.gene048520.t1 | MTR_4g007130 | 36.962 | 395 | 138 | 12 | 8 | 302 | 25 | 408 | 4.39e-59 | 194 |
| MS.gene048520.t1 | MTR_5g015810 | 37.725 | 334 | 136 | 7 | 40 | 303 | 1 | 332 | 6.07e-58 | 189 |
| MS.gene048520.t1 | MTR_4g122030 | 38.144 | 291 | 152 | 9 | 30 | 302 | 69 | 349 | 5.29e-54 | 179 |
| MS.gene048520.t1 | MTR_5g015810 | 37.413 | 286 | 119 | 5 | 77 | 303 | 2 | 286 | 2.45e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048520.t1 | AT2G30090 | 41.602 | 387 | 120 | 10 | 8 | 303 | 15 | 386 | 5.38e-82 | 253 |
| MS.gene048520.t1 | AT5G67430 | 40.590 | 271 | 119 | 6 | 3 | 235 | 5 | 271 | 3.24e-55 | 184 |
| MS.gene048520.t1 | AT2G23060 | 40.824 | 267 | 92 | 7 | 8 | 211 | 7 | 270 | 5.88e-50 | 171 |
| MS.gene048520.t1 | AT2G23060 | 48.454 | 97 | 46 | 2 | 206 | 302 | 320 | 412 | 2.78e-22 | 96.3 |
| MS.gene048520.t1 | AT4G37580 | 41.085 | 258 | 97 | 6 | 8 | 211 | 4 | 260 | 1.26e-49 | 169 |
| MS.gene048520.t1 | AT4G37580 | 46.392 | 97 | 48 | 2 | 206 | 302 | 310 | 402 | 6.19e-21 | 92.4 |
| MS.gene048520.t1 | AT4G37580 | 47.716 | 197 | 82 | 3 | 36 | 211 | 7 | 203 | 2.87e-49 | 167 |
| MS.gene048520.t1 | AT4G37580 | 46.392 | 97 | 48 | 2 | 206 | 302 | 253 | 345 | 3.65e-21 | 92.4 |
| MS.gene048520.t1 | AT5G67430 | 44.019 | 209 | 101 | 4 | 40 | 235 | 1 | 206 | 6.56e-49 | 166 |
| MS.gene048520.t1 | AT2G23060 | 48.529 | 136 | 60 | 2 | 86 | 211 | 1 | 136 | 1.61e-34 | 127 |
| MS.gene048520.t1 | AT2G23060 | 48.454 | 97 | 46 | 2 | 206 | 302 | 186 | 278 | 4.89e-23 | 96.3 |
Find 64 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGATGATATTAATAT+TGG | 0.198020 | 3.3:-52548499 | MS.gene048520:CDS |
| ATTAAGGAATAAATTAAGTT+TGG | 0.224040 | 3.3:-52548539 | MS.gene048520:CDS |
| AGCTCTTGTAGGTGGGATTT+TGG | 0.230695 | 3.3:+52548033 | None:intergenic |
| TTCACTAGCTTCCCTGAAAA+TGG | 0.245411 | 3.3:+52548256 | None:intergenic |
| CTATTTGGCACTTGTCCATT+AGG | 0.291316 | 3.3:+52548475 | None:intergenic |
| AATATATTTCCTATATCATT+AGG | 0.292377 | 3.3:+52548559 | None:intergenic |
| CTAAGCATAGCCCAACTATT+TGG | 0.310916 | 3.3:+52548460 | None:intergenic |
| TTAAGGAATAAATTAAGTTT+GGG | 0.313536 | 3.3:-52548538 | MS.gene048520:CDS |
| ATGATATAGGAAATATATTA+AGG | 0.325837 | 3.3:-52548555 | MS.gene048520:CDS |
| TTTATGCACCACAAATCTTC+AGG | 0.326456 | 3.3:+52548103 | None:intergenic |
| AGGACATCCACCAAAGGATT+TGG | 0.330187 | 3.3:-52548908 | MS.gene048520:CDS |
| ATGTCAATTTGTGCACAATA+TGG | 0.349042 | 3.3:-52548227 | MS.gene048520:CDS |
| ATCATACTTTAAACCTCTCT+TGG | 0.350495 | 3.3:+52547998 | None:intergenic |
| GATATTAATATTGGGCCTAA+TGG | 0.352217 | 3.3:-52548490 | MS.gene048520:CDS |
| AGTTTAACTACACAAAGTTT+AGG | 0.361536 | 3.3:-52548714 | MS.gene048520:CDS |
| TTAAAGATGATATTAATATT+GGG | 0.372605 | 3.3:-52548498 | MS.gene048520:CDS |
| TAGGGTATGCCCTAGGCTTA+AGG | 0.378312 | 3.3:-52548879 | MS.gene048520:CDS |
| ATAAAAGTTGTAACTGTTCA+AGG | 0.382489 | 3.3:-52548928 | MS.gene048520:CDS |
| TCTCCACATCATAGAAGAAA+AGG | 0.405669 | 3.3:-52548853 | MS.gene048520:CDS |
| ATCACTCTATAGAAGATTCA+TGG | 0.406094 | 3.3:-52548599 | MS.gene048520:CDS |
| CCTACTGTTGCCAAATCCTT+TGG | 0.417451 | 3.3:+52548898 | None:intergenic |
| AGCAGAGCTTGACAATGAAT+TGG | 0.418408 | 3.3:-52548971 | MS.gene048520:CDS |
| AAGATTATTGTGACTGAAGT+TGG | 0.419377 | 3.3:-52548178 | MS.gene048520:CDS |
| TCTCATGCCCTGAAGATTTG+TGG | 0.422983 | 3.3:-52548111 | MS.gene048520:CDS |
| ATTCTTCTAATGTTCTTACT+AGG | 0.427168 | 3.3:+52548818 | None:intergenic |
| TGAAGATTTGTGGTGCATAA+AGG | 0.428454 | 3.3:-52548101 | MS.gene048520:CDS |
| ATAAATTAAGTTTGGGGACA+TGG | 0.434467 | 3.3:-52548531 | MS.gene048520:CDS |
| GAATTGGTTGGTGTCATTCA+AGG | 0.456359 | 3.3:-52548955 | MS.gene048520:CDS |
| ATGGACAAGTGCCAAATAGT+TGG | 0.459933 | 3.3:-52548471 | MS.gene048520:CDS |
| TCATACTTTAAACCTCTCTT+GGG | 0.469463 | 3.3:+52547999 | None:intergenic |
| TTTAATGAGTGATGGTTCAC+AGG | 0.470283 | 3.3:+52548670 | None:intergenic |
| AGGGTATGCCCTAGGCTTAA+GGG | 0.471150 | 3.3:-52548878 | MS.gene048520:CDS |
| GTTGGGCTATGCTTAGTGTA+TGG | 0.480182 | 3.3:-52548453 | MS.gene048520:CDS |
| TCTACGAAAAGAGCTCTTGT+AGG | 0.482372 | 3.3:+52548022 | None:intergenic |
| ACTGTTGCCAAATCCTTTGG+TGG | 0.486849 | 3.3:+52548901 | None:intergenic |
| TGGACAAGTGCCAAATAGTT+GGG | 0.496162 | 3.3:-52548470 | MS.gene048520:CDS |
| TAGTAAGAACATTAGAAGAA+TGG | 0.512758 | 3.3:-52548816 | MS.gene048520:CDS |
| ACAGGGTTAACAAGAATAGA+TGG | 0.514152 | 3.3:+52548688 | None:intergenic |
| TTATGCACCACAAATCTTCA+GGG | 0.517119 | 3.3:+52548104 | None:intergenic |
| GTTTAGAATCAGAAGCTATG+AGG | 0.517776 | 3.3:-52549624 | MS.gene048520:CDS |
| ATGGTTCATTTCTAATGATG+TGG | 0.522995 | 3.3:-52548797 | MS.gene048520:CDS |
| TCACTCTATAGAAGATTCAT+GGG | 0.529453 | 3.3:-52548598 | MS.gene048520:CDS |
| CTCCACATCATAGAAGAAAA+GGG | 0.538419 | 3.3:-52548852 | MS.gene048520:CDS |
| GTGGAGATACCCTTAAGCCT+AGG | 0.544733 | 3.3:+52548869 | None:intergenic |
| ATGCTTAGTGTATGGAATAG+TGG | 0.546161 | 3.3:-52548445 | MS.gene048520:intron |
| ATTAAGTTTGGGGACATGGA+TGG | 0.547711 | 3.3:-52548527 | MS.gene048520:CDS |
| CATCATAGAAGAAAAGGGAT+TGG | 0.551271 | 3.3:-52548847 | MS.gene048520:CDS |
| ACGAAAAGAGCTCTTGTAGG+TGG | 0.561968 | 3.3:+52548025 | None:intergenic |
| TAAGGAATAAATTAAGTTTG+GGG | 0.567784 | 3.3:-52548537 | MS.gene048520:CDS |
| CAAAGGATTTGGCAACAGTA+GGG | 0.570122 | 3.3:-52548897 | MS.gene048520:CDS |
| CCAAAGGATTTGGCAACAGT+AGG | 0.570760 | 3.3:-52548898 | MS.gene048520:CDS |
| TTTAGAATCAGAAGCTATGA+GGG | 0.576337 | 3.3:-52549623 | MS.gene048520:CDS |
| ATTATTGTGACTGAAGTTGG+AGG | 0.580952 | 3.3:-52548175 | MS.gene048520:CDS |
| TGGAGATACCCTTAAGCCTA+GGG | 0.588065 | 3.3:+52548870 | None:intergenic |
| GCAACAGTAGGGTATGCCCT+AGG | 0.591773 | 3.3:-52548886 | MS.gene048520:CDS |
| TGATGTGGACTATGCATACA+TGG | 0.598697 | 3.3:-52548782 | MS.gene048520:CDS |
| CGAAAAGAGCTCTTGTAGGT+GGG | 0.600873 | 3.3:+52548026 | None:intergenic |
| TTAATGAGTGATGGTTCACA+GGG | 0.619510 | 3.3:+52548671 | None:intergenic |
| GAGCTTGACAATGAATTGGT+TGG | 0.628667 | 3.3:-52548967 | MS.gene048520:CDS |
| TCAATCATCACATTCCACAT+TGG | 0.637209 | 3.3:-52548141 | MS.gene048520:CDS |
| AAATTTAGAGAGAAAATGTG+AGG | 0.640564 | 3.3:-52549573 | MS.gene048520:intron |
| CATGAGAGCAACTTCCAATG+TGG | 0.679406 | 3.3:+52548127 | None:intergenic |
| TGTTCAAGGACATCCACCAA+AGG | 0.683056 | 3.3:-52548914 | MS.gene048520:CDS |
| CACTCTATAGAAGATTCATG+GGG | 0.722156 | 3.3:-52548597 | MS.gene048520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGATGATATTAATATT+GGG | - | chr3.3:52549146-52549165 | MS.gene048520:intron | 10.0% |
| !! | TTTAAAGATGATATTAATAT+TGG | - | chr3.3:52549145-52549164 | MS.gene048520:intron | 10.0% |
| !! | AAAATCTTCAATATATATTG+CGG | + | chr3.3:52548459-52548478 | None:intergenic | 15.0% |
| !! | AATATATTTCCTATATCATT+AGG | + | chr3.3:52549088-52549107 | None:intergenic | 15.0% |
| !! | ACATAAAATAAAATCCAAAA+GGG | + | chr3.3:52549348-52549367 | None:intergenic | 15.0% |
| !! | ATGATATAGGAAATATATTA+AGG | - | chr3.3:52549089-52549108 | MS.gene048520:intron | 15.0% |
| !! | ATTAAGGAATAAATTAAGTT+TGG | - | chr3.3:52549105-52549124 | MS.gene048520:intron | 15.0% |
| !! | TACATAAAATAAAATCCAAA+AGG | + | chr3.3:52549349-52549368 | None:intergenic | 15.0% |
| !! | TTAAGGAATAAATTAAGTTT+GGG | - | chr3.3:52549106-52549125 | MS.gene048520:intron | 15.0% |
| !!! | TTTGGATTTTATTTTATGTA+TGG | - | chr3.3:52549349-52549368 | MS.gene048520:intron | 15.0% |
| !! | AGAGAAAAAAAGGAAAAAAA+AGG | + | chr3.3:52548240-52548259 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAGGAAAAAAAA+GGG | + | chr3.3:52548239-52548258 | None:intergenic | 20.0% |
| !! | TAAGGAATAAATTAAGTTTG+GGG | - | chr3.3:52549107-52549126 | MS.gene048520:intron | 20.0% |
| !!! | ATACTTTTAAATTGTGATTG+CGG | - | chr3.3:52548310-52548329 | MS.gene048520:intron | 20.0% |
| !!! | TGCATTTTACTATAATAGAA+AGG | - | chr3.3:52548514-52548533 | MS.gene048520:CDS | 20.0% |
| ! | AAAGGAAAAGAGAGAAAAAA+AGG | + | chr3.3:52548250-52548269 | None:intergenic | 25.0% |
| ! | AAAGTATACTAGAAAGAACA+AGG | + | chr3.3:52548297-52548316 | None:intergenic | 25.0% |
| ! | AAATGGGATTGATCTATAAA+AGG | + | chr3.3:52548268-52548287 | None:intergenic | 25.0% |
| ! | AAATTTAGAGAGAAAATGTG+AGG | - | chr3.3:52548071-52548090 | MS.gene048520:CDS | 25.0% |
| ! | AGTTTAACTACACAAAGTTT+AGG | - | chr3.3:52548930-52548949 | MS.gene048520:CDS | 25.0% |
| ! | ATAAAAGTTGTAACTGTTCA+AGG | - | chr3.3:52548716-52548735 | MS.gene048520:CDS | 25.0% |
| ! | ATTCTTCTAATGTTCTTACT+AGG | + | chr3.3:52548829-52548848 | None:intergenic | 25.0% |
| ! | GTGTATAACAAACAACAAAA+AGG | + | chr3.3:52549256-52549275 | None:intergenic | 25.0% |
| ! | TAACTTCTTAATTGGATGTT+AGG | - | chr3.3:52548649-52548668 | MS.gene048520:CDS | 25.0% |
| ! | TAGTAAGAACATTAGAAGAA+TGG | - | chr3.3:52548828-52548847 | MS.gene048520:CDS | 25.0% |
| ! | TTAAAGAAATCAGGTAAAGT+AGG | + | chr3.3:52549325-52549344 | None:intergenic | 25.0% |
| !! | AAAGAACAAGGAGTATAAAA+TGG | + | chr3.3:52548285-52548304 | None:intergenic | 25.0% |
| !! | AAAGTAGGCAATTTTAAACA+TGG | + | chr3.3:52549310-52549329 | None:intergenic | 25.0% |
| !! | AAGAACAAGGAGTATAAAAT+GGG | + | chr3.3:52548284-52548303 | None:intergenic | 25.0% |
| !! | AAGTAGGCAATTTTAAACAT+GGG | + | chr3.3:52549309-52549328 | None:intergenic | 25.0% |
| !! | GAGATATTCAAGTTAAAGAT+AGG | - | chr3.3:52549223-52549242 | MS.gene048520:intron | 25.0% |
| !! | TTGAGATTTTTAATGAGTGA+TGG | + | chr3.3:52548985-52549004 | None:intergenic | 25.0% |
| !!! | GAAAACATGGTTTTAAATTG+TGG | + | chr3.3:52548602-52548621 | None:intergenic | 25.0% |
| !!! | GAGTTTTTTCCTAATGATAT+AGG | - | chr3.3:52549076-52549095 | MS.gene048520:intron | 25.0% |
| !!! | GTTTGTTATACACAAAAAGT+TGG | - | chr3.3:52549263-52549282 | MS.gene048520:intron | 25.0% |
| AAGATTATTGTGACTGAAGT+TGG | - | chr3.3:52549466-52549485 | MS.gene048520:intron | 30.0% | |
| ACATCCAATTAAGAAGTTAG+TGG | + | chr3.3:52548648-52548667 | None:intergenic | 30.0% | |
| ATAAATTAAGTTTGGGGACA+TGG | - | chr3.3:52549113-52549132 | MS.gene048520:intron | 30.0% | |
| ATCACTCTATAGAAGATTCA+TGG | - | chr3.3:52549045-52549064 | MS.gene048520:intron | 30.0% | |
| ATCATTAGGAAAAAACTCTG+TGG | + | chr3.3:52549074-52549093 | None:intergenic | 30.0% | |
| ATGGTTCATTTCTAATGATG+TGG | - | chr3.3:52548847-52548866 | MS.gene048520:CDS | 30.0% | |
| ATGTCAATTTGTGCACAATA+TGG | - | chr3.3:52549417-52549436 | MS.gene048520:intron | 30.0% | |
| GATATTAATATTGGGCCTAA+TGG | - | chr3.3:52549154-52549173 | MS.gene048520:intron | 30.0% | |
| GATCAAAGAACTTGAAAACA+TGG | + | chr3.3:52548615-52548634 | None:intergenic | 30.0% | |
| TCACTCTATAGAAGATTCAT+GGG | - | chr3.3:52549046-52549065 | MS.gene048520:intron | 30.0% | |
| TCTCATAACCCTTTATATTG+CGG | - | chr3.3:52548392-52548411 | MS.gene048520:intron | 30.0% | |
| ! | ACTGAAGTTTAAAACCATTG+TGG | + | chr3.3:52548418-52548437 | None:intergenic | 30.0% |
| ! | TTTAGAATCAGAAGCTATGA+GGG | - | chr3.3:52548021-52548040 | MS.gene048520:CDS | 30.0% |
| !! | ATAAAGGCACTGAAAAATGA+AGG | - | chr3.3:52549559-52549578 | MS.gene048520:intron | 30.0% |
| AAGAGAAACACACTTTCTGA+TGG | + | chr3.3:52548102-52548121 | None:intergenic | 35.0% | |
| ACAGGGTTAACAAGAATAGA+TGG | + | chr3.3:52548959-52548978 | None:intergenic | 35.0% | |
| ACTGTTTCGAATCCTACAAA+TGG | + | chr3.3:52548145-52548164 | None:intergenic | 35.0% | |
| ATATACCAGCATCATGTACA+AGG | + | chr3.3:52548169-52548188 | None:intergenic | 35.0% | |
| ATGCTTAGTGTATGGAATAG+TGG | - | chr3.3:52549199-52549218 | MS.gene048520:intron | 35.0% | |
| ATGTATGGTGTGTATCATGA+AGG | - | chr3.3:52549364-52549383 | MS.gene048520:intron | 35.0% | |
| ATTATTGTGACTGAAGTTGG+AGG | - | chr3.3:52549469-52549488 | MS.gene048520:intron | 35.0% | |
| CACTCTATAGAAGATTCATG+GGG | - | chr3.3:52549047-52549066 | MS.gene048520:intron | 35.0% | |
| CATCATAGAAGAAAAGGGAT+TGG | - | chr3.3:52548797-52548816 | MS.gene048520:CDS | 35.0% | |
| CCAAAAGGGTTAAAGAAATC+AGG | + | chr3.3:52549334-52549353 | None:intergenic | 35.0% | |
| CTCCACATCATAGAAGAAAA+GGG | - | chr3.3:52548792-52548811 | MS.gene048520:CDS | 35.0% | |
| CTGTTTCGAATCCTACAAAT+GGG | + | chr3.3:52548144-52548163 | None:intergenic | 35.0% | |
| TATACCAGCATCATGTACAA+GGG | + | chr3.3:52548168-52548187 | None:intergenic | 35.0% | |
| TCAATCATCACATTCCACAT+TGG | - | chr3.3:52549503-52549522 | MS.gene048520:intron | 35.0% | |
| TCAGTTTACAACTGCAAATG+TGG | - | chr3.3:52548433-52548452 | MS.gene048520:intron | 35.0% | |
| TCCAATTAAGAAGTTAGTGG+TGG | + | chr3.3:52548645-52548664 | None:intergenic | 35.0% | |
| TCCACCACTAACTTCTTAAT+TGG | - | chr3.3:52548641-52548660 | MS.gene048520:CDS | 35.0% | |
| TCTCCACATCATAGAAGAAA+AGG | - | chr3.3:52548791-52548810 | MS.gene048520:CDS | 35.0% | |
| TGAAGATTTGTGGTGCATAA+AGG | - | chr3.3:52549543-52549562 | MS.gene048520:intron | 35.0% | |
| TGTATGGTGTGTATCATGAA+GGG | - | chr3.3:52549365-52549384 | MS.gene048520:intron | 35.0% | |
| TGTTTCGAATCCTACAAATG+GGG | + | chr3.3:52548143-52548162 | None:intergenic | 35.0% | |
| TTAATGAGTGATGGTTCACA+GGG | + | chr3.3:52548976-52548995 | None:intergenic | 35.0% | |
| TTAGAGAGAAAATGTGAGGT+AGG | - | chr3.3:52548075-52548094 | MS.gene048520:CDS | 35.0% | |
| TTATGCACCACAAATCTTCA+GGG | + | chr3.3:52549543-52549562 | None:intergenic | 35.0% | |
| TTTAATGAGTGATGGTTCAC+AGG | + | chr3.3:52548977-52548996 | None:intergenic | 35.0% | |
| TTTATGCACCACAAATCTTC+AGG | + | chr3.3:52549544-52549563 | None:intergenic | 35.0% | |
| TTTCTCTTCACAGACACTAT+GGG | - | chr3.3:52548114-52548133 | MS.gene048520:CDS | 35.0% | |
| ! | ATCCCTTTTCTTCTATGATG+TGG | + | chr3.3:52548797-52548816 | None:intergenic | 35.0% |
| ! | CCTGATTTCTTTAACCCTTT+TGG | - | chr3.3:52549331-52549350 | MS.gene048520:intron | 35.0% |
| ! | GTTTAGAATCAGAAGCTATG+AGG | - | chr3.3:52548020-52548039 | MS.gene048520:CDS | 35.0% |
| !!! | GCACTTACGGTTTTAAATTG+TGG | + | chr3.3:52548558-52548577 | None:intergenic | 35.0% |
| AGCAGAGCTTGACAATGAAT+TGG | - | chr3.3:52548673-52548692 | MS.gene048520:CDS | 40.0% | |
| ATGGACAAGTGCCAAATAGT+TGG | - | chr3.3:52549173-52549192 | MS.gene048520:intron | 40.0% | |
| ATTAAGTTTGGGGACATGGA+TGG | - | chr3.3:52549117-52549136 | MS.gene048520:intron | 40.0% | |
| CAAAGGATTTGGCAACAGTA+GGG | - | chr3.3:52548747-52548766 | MS.gene048520:CDS | 40.0% | |
| CATTGTGGCCGCAATATAAA+GGG | + | chr3.3:52548403-52548422 | None:intergenic | 40.0% | |
| CTAAGCATAGCCCAACTATT+TGG | + | chr3.3:52549187-52549206 | None:intergenic | 40.0% | |
| CTATTTGGCACTTGTCCATT+AGG | + | chr3.3:52549172-52549191 | None:intergenic | 40.0% | |
| GAGCTTGACAATGAATTGGT+TGG | - | chr3.3:52548677-52548696 | MS.gene048520:CDS | 40.0% | |
| GTTTCTCTTCACAGACACTA+TGG | - | chr3.3:52548113-52548132 | MS.gene048520:CDS | 40.0% | |
| TCTACGAAAAGAGCTCTTGT+AGG | + | chr3.3:52549625-52549644 | None:intergenic | 40.0% | |
| TGGACAAGTGCCAAATAGTT+GGG | - | chr3.3:52549174-52549193 | MS.gene048520:intron | 40.0% | |
| ! | TGATGTGGACTATGCATACA+TGG | - | chr3.3:52548862-52548881 | MS.gene048520:CDS | 40.0% |
| ! | TTCACTAGCTTCCCTGAAAA+TGG | + | chr3.3:52549391-52549410 | None:intergenic | 40.0% |
| !! | ATCATGAAGGGCCATTTTCA+GGG | - | chr3.3:52549377-52549396 | MS.gene048520:intron | 40.0% |
| !! | GAATTGGTTGGTGTCATTCA+AGG | - | chr3.3:52548689-52548708 | MS.gene048520:CDS | 40.0% |
| !! | TATCATGAAGGGCCATTTTC+AGG | - | chr3.3:52549376-52549395 | MS.gene048520:intron | 40.0% |
| ACGAAAAGAGCTCTTGTAGG+TGG | + | chr3.3:52549622-52549641 | None:intergenic | 45.0% | |
| ACTGTTGCCAAATCCTTTGG+TGG | + | chr3.3:52548746-52548765 | None:intergenic | 45.0% | |
| AGGACATCCACCAAAGGATT+TGG | - | chr3.3:52548736-52548755 | MS.gene048520:CDS | 45.0% | |
| CATGAGAGCAACTTCCAATG+TGG | + | chr3.3:52549520-52549539 | None:intergenic | 45.0% | |
| CCAAAGGATTTGGCAACAGT+AGG | - | chr3.3:52548746-52548765 | MS.gene048520:CDS | 45.0% | |
| CCATTGTGGCCGCAATATAA+AGG | + | chr3.3:52548404-52548423 | None:intergenic | 45.0% | |
| CCTACTGTTGCCAAATCCTT+TGG | + | chr3.3:52548749-52548768 | None:intergenic | 45.0% | |
| CCTTTATATTGCGGCCACAA+TGG | - | chr3.3:52548401-52548420 | MS.gene048520:intron | 45.0% | |
| CGAAAAGAGCTCTTGTAGGT+GGG | + | chr3.3:52549621-52549640 | None:intergenic | 45.0% | |
| GTTGGGCTATGCTTAGTGTA+TGG | - | chr3.3:52549191-52549210 | MS.gene048520:intron | 45.0% | |
| TCTCATGCCCTGAAGATTTG+TGG | - | chr3.3:52549533-52549552 | MS.gene048520:intron | 45.0% | |
| TGGAGATACCCTTAAGCCTA+GGG | + | chr3.3:52548777-52548796 | None:intergenic | 45.0% | |
| TGTTCAAGGACATCCACCAA+AGG | - | chr3.3:52548730-52548749 | MS.gene048520:CDS | 45.0% | |
| ! | AGCTCTTGTAGGTGGGATTT+TGG | + | chr3.3:52549614-52549633 | None:intergenic | 45.0% |
| ! | TCTTTTCGTAGACCCAAGAG+AGG | - | chr3.3:52549633-52549652 | MS.gene048520:CDS | 45.0% |
| AGGGTATGCCCTAGGCTTAA+GGG | - | chr3.3:52548766-52548785 | MS.gene048520:CDS | 50.0% | |
| CAGTCCCTTGTACATGATGC+TGG | - | chr3.3:52548161-52548180 | MS.gene048520:CDS | 50.0% | |
| CTATGGGTGACCCCATTTGT+AGG | - | chr3.3:52548130-52548149 | MS.gene048520:CDS | 50.0% | |
| GTGGAGATACCCTTAAGCCT+AGG | + | chr3.3:52548778-52548797 | None:intergenic | 50.0% | |
| GTGGTCAGCATATGCAGTTG+TGG | + | chr3.3:52548583-52548602 | None:intergenic | 50.0% | |
| TAGGGTATGCCCTAGGCTTA+AGG | - | chr3.3:52548765-52548784 | MS.gene048520:CDS | 50.0% | |
| TGCAGTTGTGGCTGCACTTA+CGG | + | chr3.3:52548571-52548590 | None:intergenic | 50.0% | |
| GCAACAGTAGGGTATGCCCT+AGG | - | chr3.3:52548758-52548777 | MS.gene048520:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 52548006 | 52549660 | 52548006 | ID=MS.gene048520 |
| chr3.3 | mRNA | 52548006 | 52549660 | 52548006 | ID=MS.gene048520.t1;Parent=MS.gene048520 |
| chr3.3 | exon | 52549574 | 52549660 | 52549574 | ID=MS.gene048520.t1.exon1;Parent=MS.gene048520.t1 |
| chr3.3 | CDS | 52549574 | 52549660 | 52549574 | ID=cds.MS.gene048520.t1;Parent=MS.gene048520.t1 |
| chr3.3 | exon | 52548446 | 52548995 | 52548446 | ID=MS.gene048520.t1.exon2;Parent=MS.gene048520.t1 |
| chr3.3 | CDS | 52548446 | 52548995 | 52548446 | ID=cds.MS.gene048520.t1;Parent=MS.gene048520.t1 |
| chr3.3 | exon | 52548006 | 52548280 | 52548006 | ID=MS.gene048520.t1.exon3;Parent=MS.gene048520.t1 |
| chr3.3 | CDS | 52548006 | 52548280 | 52548006 | ID=cds.MS.gene048520.t1;Parent=MS.gene048520.t1 |
| Gene Sequence |
| Protein sequence |
