Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048526.t1 | KEH34360.1 | 79.7 | 551 | 108 | 3 | 1 | 550 | 1 | 548 | 1.20E-157 | 566.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048526.t1 | A0A072V894 | 79.7 | 551 | 108 | 3 | 1 | 550 | 1 | 548 | 9.0e-158 | 566.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048526.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048526.t1 | MTR_3g465110 | 87.912 | 546 | 60 | 5 | 1 | 544 | 1 | 542 | 0.0 | 922 |
| MS.gene048526.t1 | MTR_3g104830 | 50.808 | 557 | 193 | 13 | 7 | 543 | 2 | 497 | 4.75e-168 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048526.t1 | AT5G16100 | 25.253 | 297 | 178 | 6 | 267 | 528 | 153 | 440 | 1.34e-23 | 104 |
Find 110 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAGTCCATGGTAATTT+TGG | 0.212819 | 3.3:-52619410 | None:intergenic |
| GGGTCCATTATTGCTATTAA+TGG | 0.250205 | 3.3:-52619385 | None:intergenic |
| ATTGCTATTAATGGACAAAT+TGG | 0.250376 | 3.3:-52619376 | None:intergenic |
| CATGGACATGGTAGCAATAT+TGG | 0.250557 | 3.3:+52619597 | MS.gene048526:CDS |
| CAAAATAATAATGTTTCATT+TGG | 0.253731 | 3.3:+52619951 | MS.gene048526:CDS |
| TTGTCCATTAATAGCAATAA+TGG | 0.260366 | 3.3:+52619381 | MS.gene048526:CDS |
| GGTCCTATCGATAATTATTC+AGG | 0.280430 | 3.3:+52620586 | MS.gene048526:CDS |
| TGGATTGCGGTTGCTCAAAT+TGG | 0.290960 | 3.3:-52619352 | None:intergenic |
| AGACGAATCATTTACTCTAA+TGG | 0.306498 | 3.3:+52620101 | MS.gene048526:CDS |
| ATTGTTGGGCCTCCATTAAC+AGG | 0.321028 | 3.3:-52620286 | None:intergenic |
| TATGAAAATCTTGAGATTCA+TGG | 0.321881 | 3.3:+52620223 | MS.gene048526:CDS |
| CAAGAGCAAGTTGGTGAGAT+TGG | 0.322818 | 3.3:+52621145 | MS.gene048526:CDS |
| AACGTTGCACCTTCGATACT+TGG | 0.325070 | 3.3:-52619204 | None:intergenic |
| CGCCATGTGACACCTGTTAA+TGG | 0.325291 | 3.3:+52620274 | MS.gene048526:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.329852 | 3.3:+52620561 | MS.gene048526:CDS |
| CACACTACTGCTGCTGATAA+TGG | 0.341115 | 3.3:-52621762 | None:intergenic |
| CTCTTTGCACCGGATATGAT+TGG | 0.357597 | 3.3:+52620542 | MS.gene048526:CDS |
| CTTGAGATTCATGGAAGCTT+GGG | 0.357672 | 3.3:+52620232 | MS.gene048526:CDS |
| CATGCTTACAGATGAGATAA+TGG | 0.387376 | 3.3:+52621108 | MS.gene048526:intron |
| GATATTAAATTGTAATTGAA+TGG | 0.400636 | 3.3:-52619771 | None:intergenic |
| TGATGAAATAAAGAACTTCC+TGG | 0.412875 | 3.3:+52620447 | MS.gene048526:CDS |
| CTATTAATGGACAAATTGGT+TGG | 0.419381 | 3.3:-52619372 | None:intergenic |
| AGCAATACTTGAAAATCAAT+TGG | 0.419584 | 3.3:+52621609 | MS.gene048526:CDS |
| TGGAATAAGTAACTTTGAAG+TGG | 0.427695 | 3.3:+52619971 | MS.gene048526:CDS |
| CGATTACTTTCATCTACCTA+TGG | 0.438638 | 3.3:+52621385 | MS.gene048526:CDS |
| TGTATATATCATTTAGTGTA+GGG | 0.456932 | 3.3:-52619278 | None:intergenic |
| CTTCCTGGATCAGTATTGTA+TGG | 0.458075 | 3.3:+52620462 | MS.gene048526:CDS |
| CAATCGTTCGATCAATTGTT+GGG | 0.465946 | 3.3:-52620300 | None:intergenic |
| TCTTGAGATTCATGGAAGCT+TGG | 0.468339 | 3.3:+52620231 | MS.gene048526:CDS |
| CACCAAAATTACCATGGACT+TGG | 0.468970 | 3.3:+52619408 | MS.gene048526:CDS |
| AGATGTGCACAATTTACATT+GGG | 0.476510 | 3.3:+52621353 | MS.gene048526:CDS |
| TCAATCGTTCGATCAATTGT+TGG | 0.476535 | 3.3:-52620301 | None:intergenic |
| ATTCAGTTGTGGCATTGCAT+TGG | 0.484885 | 3.3:-52619637 | None:intergenic |
| CAACAAAATTACCATGGACT+TGG | 0.485409 | 3.3:+52619492 | MS.gene048526:CDS |
| GGAAGTTCTTTATTTCATCA+AGG | 0.486733 | 3.3:-52620444 | None:intergenic |
| GGAATAAGTAACTTTGAAGT+GGG | 0.489373 | 3.3:+52619972 | MS.gene048526:CDS |
| TCAATTGGACAGGCAAGATC+CGG | 0.489751 | 3.3:+52621624 | MS.gene048526:CDS |
| ATCATCAATCCAATCATATC+CGG | 0.493113 | 3.3:-52620551 | None:intergenic |
| TGTATGGAACATAATTCAGC+AGG | 0.494565 | 3.3:+52620478 | MS.gene048526:CDS |
| TTGATCAAGTGCCAACGCTT+CGG | 0.497530 | 3.3:-52620030 | None:intergenic |
| CCATGGCATTCAACATGGAC+GGG | 0.499629 | 3.3:+52619734 | MS.gene048526:CDS |
| CCAATGGTTCAAAATCAACT+TGG | 0.499953 | 3.3:+52619924 | MS.gene048526:CDS |
| CCATGTCCATGTTGAATACC+AGG | 0.503325 | 3.3:-52619876 | None:intergenic |
| GTAGAACAAAATTAAGAAGA+TGG | 0.504860 | 3.3:+52621462 | MS.gene048526:CDS |
| CTAGCCGCTGCTTCTTCCAT+AGG | 0.508372 | 3.3:-52621401 | None:intergenic |
| AGAGTCCTTTCCCTTGTCGC+CGG | 0.514274 | 3.3:-52621643 | None:intergenic |
| ATGTATATATCATTTAGTGT+AGG | 0.514577 | 3.3:-52619279 | None:intergenic |
| AAGATGTGCACAATTTACAT+TGG | 0.515263 | 3.3:+52621352 | MS.gene048526:CDS |
| CGATTACAATTTAGTATCGC+CGG | 0.515726 | 3.3:+52619704 | MS.gene048526:CDS |
| AAGCGTTGGCACTTGATCAA+TGG | 0.517228 | 3.3:+52620033 | MS.gene048526:CDS |
| AAGAAGATGGCCACACAGAA+AGG | 0.518680 | 3.3:+52621475 | MS.gene048526:CDS |
| GATTGATGATATTAATATGG+AGG | 0.518874 | 3.3:+52620564 | MS.gene048526:CDS |
| TACTTGAAAATCAATTGGAC+AGG | 0.519249 | 3.3:+52621614 | MS.gene048526:CDS |
| ACCATGGCATTCAACATGGA+CGG | 0.528445 | 3.3:+52619733 | MS.gene048526:CDS |
| GTTCCATACAATACTGATCC+AGG | 0.531567 | 3.3:-52620465 | None:intergenic |
| CACCAGAGTGTGGTTGAACA+TGG | 0.539370 | 3.3:+52619579 | MS.gene048526:CDS |
| GCGTTCAACACGGACGGAGT+AGG | 0.542691 | 3.3:+52619667 | MS.gene048526:CDS |
| ATGTCACAACAAAATGATCC+TGG | 0.543235 | 3.3:+52619858 | MS.gene048526:CDS |
| GCGACATAATTCAACGCAGT+TGG | 0.549096 | 3.3:-52621721 | None:intergenic |
| TCATGGTATTCAACAAGGGC+AGG | 0.551808 | 3.3:+52619806 | MS.gene048526:CDS |
| AAGATCCGGCGACAAGGGAA+AGG | 0.552910 | 3.3:+52621638 | MS.gene048526:CDS |
| ATATCACCAGAAAATGATCA+TGG | 0.553458 | 3.3:+52619789 | MS.gene048526:CDS |
| CTCCATTAACAGGTGTCACA+TGG | 0.555997 | 3.3:-52620276 | None:intergenic |
| CCCGTCCATGTTGAATGCCA+TGG | 0.556371 | 3.3:-52619734 | None:intergenic |
| GACTTGGAATACTTCAACGA+GGG | 0.562322 | 3.3:+52619424 | MS.gene048526:CDS |
| CAGGCAAGATCCGGCGACAA+GGG | 0.569973 | 3.3:+52621633 | MS.gene048526:CDS |
| TACATGAATAACAATAACAA+TGG | 0.572167 | 3.3:+52619297 | MS.gene048526:CDS |
| AATGACCATGGCATTCAACA+TGG | 0.573215 | 3.3:+52619729 | MS.gene048526:CDS |
| ATTGATGATATTAATATGGA+GGG | 0.585774 | 3.3:+52620565 | MS.gene048526:CDS |
| GGTATTCAACAAGGGCAGGA+TGG | 0.589069 | 3.3:+52619810 | MS.gene048526:CDS |
| GATACTAAATTGTAATCGAA+TGG | 0.589440 | 3.3:-52619699 | None:intergenic |
| TCCGTCCGTGTTGAACGCCA+TGG | 0.589945 | 3.3:-52619662 | None:intergenic |
| GTCCATGTTCAACCACACTC+TGG | 0.590094 | 3.3:-52619581 | None:intergenic |
| GAGCAAGAGCAAGAGCAAGT+TGG | 0.592584 | 3.3:+52621136 | MS.gene048526:CDS |
| TTGAGATTCATGGAAGCTTG+GGG | 0.597747 | 3.3:+52620233 | MS.gene048526:CDS |
| AATGATCATGGTATTCAACA+AGG | 0.598505 | 3.3:+52619801 | MS.gene048526:CDS |
| GTAGAAGTATTCCAAGTCCA+TGG | 0.598550 | 3.3:-52619503 | None:intergenic |
| CCTGGTATTCAACATGGACA+TGG | 0.598984 | 3.3:+52619876 | MS.gene048526:CDS |
| GTTGAAGTATTCCAAGTCCA+TGG | 0.599108 | 3.3:-52619419 | None:intergenic |
| ACAGGCAAGATCCGGCGACA+AGG | 0.599603 | 3.3:+52621632 | MS.gene048526:CDS |
| ACGCCATGGTCATTCAGTTG+TGG | 0.599712 | 3.3:-52619648 | None:intergenic |
| AAACCTGAATAATTATCGAT+AGG | 0.600017 | 3.3:-52620589 | None:intergenic |
| TCAACATCAGACCGAAGCGT+TGG | 0.600663 | 3.3:+52620019 | MS.gene048526:CDS |
| TATTATGAGACTCTTTGCAC+CGG | 0.606478 | 3.3:+52620532 | MS.gene048526:CDS |
| GGCATTCAACATGGACGGGG+TGG | 0.611696 | 3.3:+52619738 | MS.gene048526:CDS |
| CTATCCCAACAAAATTACCA+TGG | 0.618972 | 3.3:+52619486 | MS.gene048526:CDS |
| ACCATGGCGTTCAACACGGA+CGG | 0.619182 | 3.3:+52619661 | MS.gene048526:CDS |
| GGACTTGGAATACTTCTACA+AGG | 0.619567 | 3.3:+52619507 | MS.gene048526:CDS |
| AATGATCCTGGTATTCAACA+TGG | 0.622879 | 3.3:+52619870 | MS.gene048526:CDS |
| CATGGCATTCAACATGGACG+GGG | 0.625970 | 3.3:+52619735 | MS.gene048526:CDS |
| AATGACCATGGCGTTCAACA+CGG | 0.633314 | 3.3:+52619657 | MS.gene048526:CDS |
| CAAGACATGATTGATGATTG+TGG | 0.634370 | 3.3:+52621688 | MS.gene048526:CDS |
| CATGTGACACCTGTTAATGG+AGG | 0.638273 | 3.3:+52620277 | MS.gene048526:CDS |
| TGGACAAATTGGTTGGATTG+CGG | 0.639366 | 3.3:-52619365 | None:intergenic |
| TCTACCTATGGAAGAAGCAG+CGG | 0.639381 | 3.3:+52621397 | MS.gene048526:CDS |
| TGCTGCTGATAATGGTGCGG+CGG | 0.640455 | 3.3:-52621754 | None:intergenic |
| GGACCCCACCAAAATTACCA+TGG | 0.646800 | 3.3:+52619402 | MS.gene048526:CDS |
| CAACGACAAAATTCTTGCAG+TGG | 0.651838 | 3.3:+52620065 | MS.gene048526:CDS |
| GGAATACTTCTACAAGGACA+TGG | 0.662894 | 3.3:+52619513 | MS.gene048526:CDS |
| TACTGCTGCTGATAATGGTG+CGG | 0.670583 | 3.3:-52621757 | None:intergenic |
| ATGATCATGGTATTCAACAA+GGG | 0.672665 | 3.3:+52619802 | MS.gene048526:CDS |
| GTATGGAACATAATTCAGCA+GGG | 0.676056 | 3.3:+52620479 | MS.gene048526:CDS |
| GACAAGGGAAAGGACTCTAG+AGG | 0.686791 | 3.3:+52621648 | MS.gene048526:CDS |
| CCAACAAAATCACCAGAGTG+TGG | 0.691943 | 3.3:+52619569 | MS.gene048526:CDS |
| ATAAAATTACCTGCTCTGAG+AGG | 0.699829 | 3.3:-52621186 | None:intergenic |
| GTATCGCCGGAAAATGACCA+TGG | 0.708673 | 3.3:+52619717 | MS.gene048526:CDS |
| ATGCCACAACTGAATGACCA+TGG | 0.716852 | 3.3:+52619645 | MS.gene048526:CDS |
| AGTGTGGTTGAACATGGACA+TGG | 0.753622 | 3.3:+52619585 | MS.gene048526:CDS |
| GACATGATTGATGATTGTGG+CGG | 0.760229 | 3.3:+52621691 | MS.gene048526:CDS |
| GGACTTGGAATACTTCAACG+AGG | 0.774898 | 3.3:+52619423 | MS.gene048526:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAATAATGTTTCATT+TGG | + | chr3.3:52619951-52619970 | MS.gene048526:CDS | 15.0% |
| !! | CATATATATATCAAAATAAC+TGG | - | chr3.3:52620174-52620193 | None:intergenic | 15.0% |
| !! | GATATTAAATTGTAATTGAA+TGG | - | chr3.3:52619774-52619793 | None:intergenic | 15.0% |
| !! | TACTCATATTGAAAAAATTT+GGG | - | chr3.3:52619257-52619276 | None:intergenic | 15.0% |
| !! | TTACTCATATTGAAAAAATT+TGG | - | chr3.3:52619258-52619277 | None:intergenic | 15.0% |
| !!! | CTTTTAGAAATATATTTGTT+TGG | + | chr3.3:52620741-52620760 | MS.gene048526:intron | 15.0% |
| !!! | GTTTATTTTGATTCTTATAT+AGG | + | chr3.3:52620193-52620212 | MS.gene048526:intron | 15.0% |
| !!! | TATCATAATGATTTTGATTT+GGG | + | chr3.3:52620977-52620996 | MS.gene048526:intron | 15.0% |
| !!! | TTTTTTGTGTGTATTATTTT+TGG | + | chr3.3:52621507-52621526 | MS.gene048526:intron | 15.0% |
| !! | ATGTATATATCATTTAGTGT+AGG | - | chr3.3:52619282-52619301 | None:intergenic | 20.0% |
| !! | TACATGAATAACAATAACAA+TGG | + | chr3.3:52619297-52619316 | MS.gene048526:CDS | 20.0% |
| !! | TGTATATATCATTTAGTGTA+GGG | - | chr3.3:52619281-52619300 | None:intergenic | 20.0% |
| !!! | ATCATAATGATTTTGATTTG+GGG | + | chr3.3:52620978-52620997 | MS.gene048526:intron | 20.0% |
| !!! | ATTGATGATATTAATATGGA+GGG | + | chr3.3:52620565-52620584 | MS.gene048526:CDS | 20.0% |
| !!! | CTTTTAGAAATACATTTGTT+TGG | + | chr3.3:52620833-52620852 | MS.gene048526:intron | 20.0% |
| !!! | GTATCATAATGATTTTGATT+TGG | + | chr3.3:52620976-52620995 | MS.gene048526:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | + | chr3.3:52620561-52620580 | MS.gene048526:CDS | 20.0% |
| !!! | TTTCTTGTAGTGATTAATTT+TGG | - | chr3.3:52620150-52620169 | None:intergenic | 20.0% |
| ! | AAACCTGAATAATTATCGAT+AGG | - | chr3.3:52620592-52620611 | None:intergenic | 25.0% |
| ! | AGCAATACTTGAAAATCAAT+TGG | + | chr3.3:52621609-52621628 | MS.gene048526:CDS | 25.0% |
| ! | ATTGAAAAAATTTGGGTCAA+TGG | - | chr3.3:52619250-52619269 | None:intergenic | 25.0% |
| ! | CACGTATTAAATTAGCAAAA+TGG | - | chr3.3:52621548-52621567 | None:intergenic | 25.0% |
| ! | CGTGTCTTAAAATTAAGTAT+AGG | + | chr3.3:52621564-52621583 | MS.gene048526:intron | 25.0% |
| ! | GATACTAAATTGTAATCGAA+TGG | - | chr3.3:52619702-52619721 | None:intergenic | 25.0% |
| ! | GTAGAACAAAATTAAGAAGA+TGG | + | chr3.3:52621462-52621481 | MS.gene048526:CDS | 25.0% |
| ! | TATGAAAATCTTGAGATTCA+TGG | + | chr3.3:52620223-52620242 | MS.gene048526:CDS | 25.0% |
| ! | TGTAATATTACACTAAGACT+TGG | - | chr3.3:52620334-52620353 | None:intergenic | 25.0% |
| ! | TTGTCCATTAATAGCAATAA+TGG | + | chr3.3:52619381-52619400 | MS.gene048526:CDS | 25.0% |
| !! | AATTGGAATGATGATTTTGT+TGG | - | chr3.3:52619338-52619357 | None:intergenic | 25.0% |
| !! | ATTGCTATTAATGGACAAAT+TGG | - | chr3.3:52619379-52619398 | None:intergenic | 25.0% |
| !! | ATTGGAATGATGATTTTGTT+GGG | - | chr3.3:52619337-52619356 | None:intergenic | 25.0% |
| !! | GATTGATGATATTAATATGG+AGG | + | chr3.3:52620564-52620583 | MS.gene048526:CDS | 25.0% |
| !! | TTTTTAATGTTATTACGTCG+AGG | + | chr3.3:52621068-52621087 | MS.gene048526:intron | 25.0% |
| AAGATGTGCACAATTTACAT+TGG | + | chr3.3:52621352-52621371 | MS.gene048526:CDS | 30.0% | |
| AATGATCATGGTATTCAACA+AGG | + | chr3.3:52619801-52619820 | MS.gene048526:CDS | 30.0% | |
| AGACGAATCATTTACTCTAA+TGG | + | chr3.3:52620101-52620120 | MS.gene048526:CDS | 30.0% | |
| AGATGTGCACAATTTACATT+GGG | + | chr3.3:52621353-52621372 | MS.gene048526:CDS | 30.0% | |
| ATATCACCAGAAAATGATCA+TGG | + | chr3.3:52619789-52619808 | MS.gene048526:CDS | 30.0% | |
| ATCATCAATCCAATCATATC+CGG | - | chr3.3:52620554-52620573 | None:intergenic | 30.0% | |
| ATGATCATGGTATTCAACAA+GGG | + | chr3.3:52619802-52619821 | MS.gene048526:CDS | 30.0% | |
| TACTTGAAAATCAATTGGAC+AGG | + | chr3.3:52621614-52621633 | MS.gene048526:CDS | 30.0% | |
| TGATGAAATAAAGAACTTCC+TGG | + | chr3.3:52620447-52620466 | MS.gene048526:CDS | 30.0% | |
| ! | AAGTCCATGGTAATTTTGTT+GGG | - | chr3.3:52619493-52619512 | None:intergenic | 30.0% |
| ! | AATACTTTTACCTTTCTGTG+TGG | - | chr3.3:52621488-52621507 | None:intergenic | 30.0% |
| ! | ATTTTGTTGGGACAAATTTG+TGG | - | chr3.3:52619325-52619344 | None:intergenic | 30.0% |
| ! | CTATTAATGGACAAATTGGT+TGG | - | chr3.3:52619375-52619394 | None:intergenic | 30.0% |
| ! | GGAAGTTCTTTATTTCATCA+AGG | - | chr3.3:52620447-52620466 | None:intergenic | 30.0% |
| ! | TATAGGTGAAATGTCTTTTG+AGG | + | chr3.3:52621581-52621600 | MS.gene048526:intron | 30.0% |
| ! | TGAAACATTTTCTCTTCCAA+TGG | + | chr3.3:52619908-52619927 | MS.gene048526:CDS | 30.0% |
| ! | TGAATACCATGATCATTTTC+TGG | - | chr3.3:52619798-52619817 | None:intergenic | 30.0% |
| ! | TGGAATAAGTAACTTTGAAG+TGG | + | chr3.3:52619971-52619990 | MS.gene048526:CDS | 30.0% |
| ! | TTTTGTTGGGACAAATTTGT+GGG | - | chr3.3:52619324-52619343 | None:intergenic | 30.0% |
| !! | AAAAACAATCCAAGTATCGA+AGG | + | chr3.3:52619195-52619214 | MS.gene048526:CDS | 30.0% |
| !! | ATTTTGTTGTGACATTGCAT+GGG | - | chr3.3:52619853-52619872 | None:intergenic | 30.0% |
| !! | GGAATAAGTAACTTTGAAGT+GGG | + | chr3.3:52619972-52619991 | MS.gene048526:CDS | 30.0% |
| !! | TGTATCAGTTTTTCTGAGAA+AGG | + | chr3.3:52620421-52620440 | MS.gene048526:intron | 30.0% |
| AATGATCCTGGTATTCAACA+TGG | + | chr3.3:52619870-52619889 | MS.gene048526:CDS | 35.0% | |
| AGATTGGAACACCTGAAAAA+AGG | + | chr3.3:52621161-52621180 | MS.gene048526:CDS | 35.0% | |
| ATGTCACAACAAAATGATCC+TGG | + | chr3.3:52619858-52619877 | MS.gene048526:CDS | 35.0% | |
| CAACAAAATTACCATGGACT+TGG | + | chr3.3:52619492-52619511 | MS.gene048526:CDS | 35.0% | |
| CAATCGTTCGATCAATTGTT+GGG | - | chr3.3:52620303-52620322 | None:intergenic | 35.0% | |
| CATGCTTACAGATGAGATAA+TGG | + | chr3.3:52621108-52621127 | MS.gene048526:intron | 35.0% | |
| CCAATGGTTCAAAATCAACT+TGG | + | chr3.3:52619924-52619943 | MS.gene048526:CDS | 35.0% | |
| CGATTACAATTTAGTATCGC+CGG | + | chr3.3:52619704-52619723 | MS.gene048526:CDS | 35.0% | |
| CGATTACTTTCATCTACCTA+TGG | + | chr3.3:52621385-52621404 | MS.gene048526:CDS | 35.0% | |
| CTATCCCAACAAAATTACCA+TGG | + | chr3.3:52619486-52619505 | MS.gene048526:CDS | 35.0% | |
| GGTCCTATCGATAATTATTC+AGG | + | chr3.3:52620586-52620605 | MS.gene048526:CDS | 35.0% | |
| GTATGGAACATAATTCAGCA+GGG | + | chr3.3:52620479-52620498 | MS.gene048526:CDS | 35.0% | |
| GTTTGTCTTCGAAATCATGA+AGG | + | chr3.3:52620608-52620627 | MS.gene048526:intron | 35.0% | |
| TAGTTGCATGTATTGAACAG+AGG | + | chr3.3:52621327-52621346 | MS.gene048526:intron | 35.0% | |
| TATTATGAGACTCTTTGCAC+CGG | + | chr3.3:52620532-52620551 | MS.gene048526:CDS | 35.0% | |
| TCAATCGTTCGATCAATTGT+TGG | - | chr3.3:52620304-52620323 | None:intergenic | 35.0% | |
| TGTATGGAACATAATTCAGC+AGG | + | chr3.3:52620478-52620497 | MS.gene048526:CDS | 35.0% | |
| TTGAACAATATATACTCGCG+AGG | + | chr3.3:52621223-52621242 | MS.gene048526:intron | 35.0% | |
| ! | ATAAAATTACCTGCTCTGAG+AGG | - | chr3.3:52621189-52621208 | None:intergenic | 35.0% |
| ! | CAAGACATGATTGATGATTG+TGG | + | chr3.3:52621688-52621707 | MS.gene048526:CDS | 35.0% |
| ! | CAAGTCCATGGTAATTTTGT+TGG | - | chr3.3:52619494-52619513 | None:intergenic | 35.0% |
| ! | GGGTCCATTATTGCTATTAA+TGG | - | chr3.3:52619388-52619407 | None:intergenic | 35.0% |
| ! | TGGTAATTTTGTTGGGATAG+TGG | - | chr3.3:52619486-52619505 | None:intergenic | 35.0% |
| ! | TTCCAAGTCCATGGTAATTT+TGG | - | chr3.3:52619413-52619432 | None:intergenic | 35.0% |
| !! | AAGTCCATGGTAATTTTGGT+GGG | - | chr3.3:52619409-52619428 | None:intergenic | 35.0% |
| !! | ACGAAAGTACCAGAAATACT+CGG | - | chr3.3:52621010-52621029 | None:intergenic | 35.0% |
| !! | CATTTTGTTGTGACATTGCA+TGG | - | chr3.3:52619854-52619873 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGGGATAGTGGAT+TGG | - | chr3.3:52619481-52619500 | None:intergenic | 35.0% |
| !!! | CCAAGTTGATTTTGAACCAT+TGG | - | chr3.3:52619927-52619946 | None:intergenic | 35.0% |
| AATGACCATGGCATTCAACA+TGG | + | chr3.3:52619729-52619748 | MS.gene048526:CDS | 40.0% | |
| ATTCAGTTGTGGCATTGCAT+TGG | - | chr3.3:52619640-52619659 | None:intergenic | 40.0% | |
| CAACGACAAAATTCTTGCAG+TGG | + | chr3.3:52620065-52620084 | MS.gene048526:CDS | 40.0% | |
| CACCAAAATTACCATGGACT+TGG | + | chr3.3:52619408-52619427 | MS.gene048526:CDS | 40.0% | |
| CATGGACATGGTAGCAATAT+TGG | + | chr3.3:52619597-52619616 | MS.gene048526:CDS | 40.0% | |
| CTTCCTGGATCAGTATTGTA+TGG | + | chr3.3:52620462-52620481 | MS.gene048526:CDS | 40.0% | |
| CTTGAGATTCATGGAAGCTT+GGG | + | chr3.3:52620232-52620251 | MS.gene048526:CDS | 40.0% | |
| GACTTGGAATACTTCAACGA+GGG | + | chr3.3:52619424-52619443 | MS.gene048526:CDS | 40.0% | |
| GGAATACTTCTACAAGGACA+TGG | + | chr3.3:52619513-52619532 | MS.gene048526:CDS | 40.0% | |
| GGACTTGGAATACTTCTACA+AGG | + | chr3.3:52619507-52619526 | MS.gene048526:CDS | 40.0% | |
| GTTCCATACAATACTGATCC+AGG | - | chr3.3:52620468-52620487 | None:intergenic | 40.0% | |
| TCTTGAGATTCATGGAAGCT+TGG | + | chr3.3:52620231-52620250 | MS.gene048526:CDS | 40.0% | |
| TGGACAAATTGGTTGGATTG+CGG | - | chr3.3:52619368-52619387 | None:intergenic | 40.0% | |
| TTGAGATTCATGGAAGCTTG+GGG | + | chr3.3:52620233-52620252 | MS.gene048526:CDS | 40.0% | |
| ! | CAAGTCCATGGTAATTTTGG+TGG | - | chr3.3:52619410-52619429 | None:intergenic | 40.0% |
| ! | CACACTCTGGTGATTTTGTT+GGG | - | chr3.3:52619571-52619590 | None:intergenic | 40.0% |
| ! | GAATTTTGTCGTTGTTCGAG+TGG | - | chr3.3:52620059-52620078 | None:intergenic | 40.0% |
| ! | GACATGATTGATGATTGTGG+CGG | + | chr3.3:52621691-52621710 | MS.gene048526:CDS | 40.0% |
| ! | GTTGAAGTATTCCAAGTCCA+TGG | - | chr3.3:52619422-52619441 | None:intergenic | 40.0% |
| !! | AGTCCATGGTAATTTTGGTG+GGG | - | chr3.3:52619408-52619427 | None:intergenic | 40.0% |
| !! | GTAGAAGTATTCCAAGTCCA+TGG | - | chr3.3:52619506-52619525 | None:intergenic | 40.0% |
| !! | TGAATGCCATGGTCATTTTC+CGG | - | chr3.3:52619726-52619745 | None:intergenic | 40.0% |
| !!! | TCTGAGAGGTTCCTTTTTTC+AGG | - | chr3.3:52621175-52621194 | None:intergenic | 40.0% |
| AAAAAGGAACCTCTCAGAGC+AGG | + | chr3.3:52621177-52621196 | MS.gene048526:CDS | 45.0% | |
| AACGTTGCACCTTCGATACT+TGG | - | chr3.3:52619207-52619226 | None:intergenic | 45.0% | |
| AAGAAGATGGCCACACAGAA+AGG | + | chr3.3:52621475-52621494 | MS.gene048526:CDS | 45.0% | |
| AAGCGACAGACTTGTCTGTA+TGG | + | chr3.3:52621286-52621305 | MS.gene048526:intron | 45.0% | |
| AATGACCATGGCGTTCAACA+CGG | + | chr3.3:52619657-52619676 | MS.gene048526:CDS | 45.0% | |
| ACCATGGCATTCAACATGGA+CGG | + | chr3.3:52619733-52619752 | MS.gene048526:CDS | 45.0% | |
| AGTGTGGTTGAACATGGACA+TGG | + | chr3.3:52619585-52619604 | MS.gene048526:CDS | 45.0% | |
| ATGCCACAACTGAATGACCA+TGG | + | chr3.3:52619645-52619664 | MS.gene048526:CDS | 45.0% | |
| ATTGTTGGGCCTCCATTAAC+AGG | - | chr3.3:52620289-52620308 | None:intergenic | 45.0% | |
| CATGTGACACCTGTTAATGG+AGG | + | chr3.3:52620277-52620296 | MS.gene048526:CDS | 45.0% | |
| CCAACAAAATCACCAGAGTG+TGG | + | chr3.3:52619569-52619588 | MS.gene048526:CDS | 45.0% | |
| CCATGTCCATGTTGAATACC+AGG | - | chr3.3:52619879-52619898 | None:intergenic | 45.0% | |
| CCTGGTATTCAACATGGACA+TGG | + | chr3.3:52619876-52619895 | MS.gene048526:CDS | 45.0% | |
| CTCTTTGCACCGGATATGAT+TGG | + | chr3.3:52620542-52620561 | MS.gene048526:CDS | 45.0% | |
| GCGACATAATTCAACGCAGT+TGG | - | chr3.3:52621724-52621743 | None:intergenic | 45.0% | |
| GGACTTGGAATACTTCAACG+AGG | + | chr3.3:52619423-52619442 | MS.gene048526:CDS | 45.0% | |
| TCAATTGGACAGGCAAGATC+CGG | + | chr3.3:52621624-52621643 | MS.gene048526:CDS | 45.0% | |
| TCATGGTATTCAACAAGGGC+AGG | + | chr3.3:52619806-52619825 | MS.gene048526:CDS | 45.0% | |
| TCTACCTATGGAAGAAGCAG+CGG | + | chr3.3:52621397-52621416 | MS.gene048526:CDS | 45.0% | |
| TGGATTGCGGTTGCTCAAAT+TGG | - | chr3.3:52619355-52619374 | None:intergenic | 45.0% | |
| TTGATCAAGTGCCAACGCTT+CGG | - | chr3.3:52620033-52620052 | None:intergenic | 45.0% | |
| ! | CCACACTCTGGTGATTTTGT+TGG | - | chr3.3:52619572-52619591 | None:intergenic | 45.0% |
| ! | CTCCATTAACAGGTGTCACA+TGG | - | chr3.3:52620279-52620298 | None:intergenic | 45.0% |
| !! | AAGCGTTGGCACTTGATCAA+TGG | + | chr3.3:52620033-52620052 | MS.gene048526:CDS | 45.0% |
| !! | CAAGAGCAAGTTGGTGAGAT+TGG | + | chr3.3:52621145-52621164 | MS.gene048526:CDS | 45.0% |
| !! | TACTGCTGCTGATAATGGTG+CGG | - | chr3.3:52621760-52621779 | None:intergenic | 45.0% |
| ACGCCATGGTCATTCAGTTG+TGG | - | chr3.3:52619651-52619670 | None:intergenic | 50.0% | |
| CACCAGAGTGTGGTTGAACA+TGG | + | chr3.3:52619579-52619598 | MS.gene048526:CDS | 50.0% | |
| CATGGCATTCAACATGGACG+GGG | + | chr3.3:52619735-52619754 | MS.gene048526:CDS | 50.0% | |
| CCATGGCATTCAACATGGAC+GGG | + | chr3.3:52619734-52619753 | MS.gene048526:CDS | 50.0% | |
| CGCCATGTGACACCTGTTAA+TGG | + | chr3.3:52620274-52620293 | MS.gene048526:CDS | 50.0% | |
| GACAAGGGAAAGGACTCTAG+AGG | + | chr3.3:52621648-52621667 | MS.gene048526:CDS | 50.0% | |
| GAGCAAGAGCAAGAGCAAGT+TGG | + | chr3.3:52621136-52621155 | MS.gene048526:CDS | 50.0% | |
| GGACCCCACCAAAATTACCA+TGG | + | chr3.3:52619402-52619421 | MS.gene048526:CDS | 50.0% | |
| GGGTTGTGACCGAGTATTTC+TGG | + | chr3.3:52620998-52621017 | MS.gene048526:intron | 50.0% | |
| GGTATTCAACAAGGGCAGGA+TGG | + | chr3.3:52619810-52619829 | MS.gene048526:CDS | 50.0% | |
| GTATCGCCGGAAAATGACCA+TGG | + | chr3.3:52619717-52619736 | MS.gene048526:CDS | 50.0% | |
| GTCCATGTTCAACCACACTC+TGG | - | chr3.3:52619584-52619603 | None:intergenic | 50.0% | |
| TCAACATCAGACCGAAGCGT+TGG | + | chr3.3:52620019-52620038 | MS.gene048526:CDS | 50.0% | |
| AAGATCCGGCGACAAGGGAA+AGG | + | chr3.3:52621638-52621657 | MS.gene048526:CDS | 55.0% | |
| ACCATGGCGTTCAACACGGA+CGG | + | chr3.3:52619661-52619680 | MS.gene048526:CDS | 55.0% | |
| AGAGTCCTTTCCCTTGTCGC+CGG | - | chr3.3:52621646-52621665 | None:intergenic | 55.0% | |
| CCCGTCCATGTTGAATGCCA+TGG | - | chr3.3:52619737-52619756 | None:intergenic | 55.0% | |
| CTAGCCGCTGCTTCTTCCAT+AGG | - | chr3.3:52621404-52621423 | None:intergenic | 55.0% | |
| !! | TGCTGCTGATAATGGTGCGG+CGG | - | chr3.3:52621757-52621776 | None:intergenic | 55.0% |
| ACAGGCAAGATCCGGCGACA+AGG | + | chr3.3:52621632-52621651 | MS.gene048526:CDS | 60.0% | |
| CAGGCAAGATCCGGCGACAA+GGG | + | chr3.3:52621633-52621652 | MS.gene048526:CDS | 60.0% | |
| GCGTTCAACACGGACGGAGT+AGG | + | chr3.3:52619667-52619686 | MS.gene048526:CDS | 60.0% | |
| GGCATTCAACATGGACGGGG+TGG | + | chr3.3:52619738-52619757 | MS.gene048526:CDS | 60.0% | |
| TCCGTCCGTGTTGAACGCCA+TGG | - | chr3.3:52619665-52619684 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 52619183 | 52621780 | 52619183 | ID=MS.gene048526 |
| chr3.3 | mRNA | 52619183 | 52621780 | 52619183 | ID=MS.gene048526.t1;Parent=MS.gene048526 |
| chr3.3 | exon | 52619183 | 52620122 | 52619183 | ID=MS.gene048526.t1.exon1;Parent=MS.gene048526.t1 |
| chr3.3 | CDS | 52619183 | 52620122 | 52619183 | ID=cds.MS.gene048526.t1;Parent=MS.gene048526.t1 |
| chr3.3 | exon | 52620215 | 52620323 | 52620215 | ID=MS.gene048526.t1.exon2;Parent=MS.gene048526.t1 |
| chr3.3 | CDS | 52620215 | 52620323 | 52620215 | ID=cds.MS.gene048526.t1;Parent=MS.gene048526.t1 |
| chr3.3 | exon | 52620429 | 52620607 | 52620429 | ID=MS.gene048526.t1.exon3;Parent=MS.gene048526.t1 |
| chr3.3 | CDS | 52620429 | 52620607 | 52620429 | ID=cds.MS.gene048526.t1;Parent=MS.gene048526.t1 |
| chr3.3 | exon | 52621119 | 52621198 | 52621119 | ID=MS.gene048526.t1.exon4;Parent=MS.gene048526.t1 |
| chr3.3 | CDS | 52621119 | 52621198 | 52621119 | ID=cds.MS.gene048526.t1;Parent=MS.gene048526.t1 |
| chr3.3 | exon | 52621347 | 52621496 | 52621347 | ID=MS.gene048526.t1.exon5;Parent=MS.gene048526.t1 |
| chr3.3 | CDS | 52621347 | 52621496 | 52621347 | ID=cds.MS.gene048526.t1;Parent=MS.gene048526.t1 |
| chr3.3 | exon | 52621586 | 52621780 | 52621586 | ID=MS.gene048526.t1.exon6;Parent=MS.gene048526.t1 |
| chr3.3 | CDS | 52621586 | 52621780 | 52621586 | ID=cds.MS.gene048526.t1;Parent=MS.gene048526.t1 |
| Gene Sequence |
| Protein sequence |
