Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04853.t1 | XP_003625243.2 | 91 | 368 | 22 | 3 | 1 | 366 | 1 | 359 | 1.10E-181 | 646 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04853.t1 | B8ANX9 | 37.3 | 134 | 80 | 3 | 173 | 303 | 164 | 296 | 2.6e-11 | 71.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04853.t1 | G7KVB9 | 91.0 | 368 | 22 | 3 | 1 | 366 | 1 | 359 | 7.7e-182 | 646.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04853.t1 | TF | GARP-G2-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04853.t1 | MTR_7g093010 | 91.033 | 368 | 22 | 3 | 1 | 366 | 1 | 359 | 0.0 | 662 |
| MS.gene04853.t1 | MTR_1g053800 | 41.441 | 333 | 157 | 9 | 35 | 356 | 9 | 314 | 4.10e-57 | 189 |
| MS.gene04853.t1 | MTR_1g053835 | 43.275 | 171 | 87 | 3 | 191 | 352 | 220 | 389 | 8.71e-31 | 121 |
| MS.gene04853.t1 | MTR_7g093030 | 44.604 | 139 | 75 | 1 | 222 | 358 | 212 | 350 | 5.08e-27 | 110 |
| MS.gene04853.t1 | MTR_1g080330 | 42.647 | 136 | 77 | 1 | 212 | 346 | 165 | 300 | 4.92e-25 | 105 |
| MS.gene04853.t1 | MTR_7g098250 | 39.394 | 165 | 86 | 4 | 190 | 346 | 229 | 387 | 2.21e-24 | 104 |
| MS.gene04853.t1 | MTR_7g115530 | 43.651 | 126 | 70 | 1 | 222 | 346 | 218 | 343 | 2.39e-23 | 100 |
| MS.gene04853.t1 | MTR_2g027860 | 41.912 | 136 | 68 | 3 | 222 | 350 | 49 | 180 | 1.31e-21 | 94.7 |
| MS.gene04853.t1 | MTR_7g088070 | 32.653 | 147 | 99 | 0 | 204 | 350 | 32 | 178 | 8.82e-21 | 91.3 |
| MS.gene04853.t1 | MTR_7g088070 | 33.548 | 155 | 91 | 2 | 204 | 350 | 32 | 182 | 1.13e-20 | 90.9 |
| MS.gene04853.t1 | MTR_1g080330 | 40.678 | 118 | 69 | 1 | 212 | 328 | 165 | 282 | 2.10e-19 | 87.4 |
| MS.gene04853.t1 | MTR_5g027440 | 37.241 | 145 | 75 | 3 | 222 | 351 | 25 | 168 | 1.55e-17 | 82.0 |
| MS.gene04853.t1 | MTR_7g115530 | 40.741 | 108 | 63 | 1 | 222 | 328 | 218 | 325 | 3.47e-17 | 82.0 |
| MS.gene04853.t1 | MTR_7g093030 | 50.000 | 82 | 41 | 0 | 222 | 303 | 212 | 293 | 8.46e-17 | 80.5 |
| MS.gene04853.t1 | MTR_6g032990 | 35.461 | 141 | 74 | 2 | 221 | 344 | 41 | 181 | 8.21e-16 | 78.6 |
| MS.gene04853.t1 | MTR_6g444980 | 36.154 | 130 | 73 | 3 | 222 | 344 | 35 | 161 | 3.86e-15 | 76.3 |
| MS.gene04853.t1 | MTR_6g444980 | 36.154 | 130 | 73 | 3 | 222 | 344 | 35 | 161 | 5.19e-15 | 75.9 |
| MS.gene04853.t1 | MTR_2g027800 | 33.858 | 127 | 83 | 1 | 222 | 348 | 39 | 164 | 1.03e-14 | 74.3 |
| MS.gene04853.t1 | MTR_2g086450 | 33.113 | 151 | 68 | 3 | 221 | 344 | 44 | 188 | 1.14e-14 | 75.1 |
| MS.gene04853.t1 | MTR_1g090670 | 33.803 | 142 | 90 | 1 | 222 | 363 | 44 | 181 | 2.75e-14 | 73.2 |
| MS.gene04853.t1 | MTR_2g027800 | 32.886 | 149 | 85 | 3 | 222 | 363 | 39 | 179 | 1.41e-13 | 71.2 |
| MS.gene04853.t1 | MTR_7g068600 | 36.364 | 132 | 72 | 4 | 220 | 343 | 11 | 138 | 2.31e-13 | 69.3 |
| MS.gene04853.t1 | MTR_7g115530 | 41.237 | 97 | 44 | 2 | 222 | 318 | 218 | 301 | 3.36e-13 | 69.7 |
| MS.gene04853.t1 | MTR_8g086410 | 51.667 | 60 | 29 | 0 | 224 | 283 | 113 | 172 | 1.04e-12 | 69.3 |
| MS.gene04853.t1 | MTR_8g086410 | 60.377 | 53 | 21 | 0 | 224 | 276 | 111 | 163 | 1.30e-12 | 68.9 |
| MS.gene04853.t1 | MTR_8g086410 | 60.377 | 53 | 21 | 0 | 224 | 276 | 113 | 165 | 1.33e-12 | 68.9 |
| MS.gene04853.t1 | MTR_1g053830 | 42.391 | 92 | 47 | 3 | 206 | 296 | 1 | 87 | 1.95e-12 | 63.2 |
| MS.gene04853.t1 | MTR_7g115530 | 53.571 | 56 | 26 | 0 | 222 | 277 | 218 | 273 | 2.37e-12 | 67.8 |
| MS.gene04853.t1 | MTR_4g081710 | 31.852 | 135 | 80 | 2 | 222 | 344 | 17 | 151 | 4.50e-12 | 67.0 |
| MS.gene04853.t1 | MTR_7g115530 | 55.769 | 52 | 23 | 0 | 222 | 273 | 218 | 269 | 5.00e-12 | 66.2 |
| MS.gene04853.t1 | MTR_2g023580 | 43.590 | 78 | 40 | 1 | 199 | 276 | 36 | 109 | 1.10e-11 | 64.7 |
| MS.gene04853.t1 | MTR_3g450310 | 53.704 | 54 | 25 | 0 | 224 | 277 | 21 | 74 | 2.08e-11 | 63.2 |
| MS.gene04853.t1 | MTR_2g084230 | 56.604 | 53 | 23 | 0 | 224 | 276 | 99 | 151 | 2.78e-11 | 64.3 |
| MS.gene04853.t1 | MTR_7g115530 | 54.902 | 51 | 23 | 0 | 222 | 272 | 218 | 268 | 3.02e-11 | 63.9 |
| MS.gene04853.t1 | MTR_2g084230 | 56.604 | 53 | 23 | 0 | 224 | 276 | 99 | 151 | 3.50e-11 | 64.3 |
| MS.gene04853.t1 | MTR_0223s0040 | 45.714 | 70 | 37 | 1 | 224 | 293 | 20 | 88 | 4.60e-11 | 63.2 |
| MS.gene04853.t1 | MTR_7g069660 | 56.604 | 53 | 23 | 0 | 224 | 276 | 73 | 125 | 6.52e-11 | 63.5 |
| MS.gene04853.t1 | MTR_2g016220 | 54.717 | 53 | 24 | 0 | 224 | 276 | 91 | 143 | 7.22e-11 | 63.5 |
| MS.gene04853.t1 | MTR_2g016220 | 54.717 | 53 | 24 | 0 | 224 | 276 | 91 | 143 | 7.47e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04853.t1 | AT5G06800 | 44.444 | 135 | 73 | 1 | 218 | 350 | 186 | 320 | 5.69e-27 | 110 |
| MS.gene04853.t1 | AT5G06800 | 45.000 | 140 | 70 | 2 | 218 | 350 | 186 | 325 | 2.13e-26 | 108 |
| MS.gene04853.t1 | AT2G01060 | 38.272 | 162 | 88 | 3 | 210 | 365 | 3 | 158 | 7.27e-24 | 100 |
| MS.gene04853.t1 | AT3G13040 | 30.519 | 308 | 159 | 11 | 96 | 364 | 98 | 389 | 4.99e-23 | 100 |
| MS.gene04853.t1 | AT3G13040 | 30.519 | 308 | 159 | 11 | 96 | 364 | 98 | 389 | 4.99e-23 | 100 |
| MS.gene04853.t1 | AT3G13040 | 30.519 | 308 | 159 | 11 | 96 | 364 | 98 | 389 | 4.99e-23 | 100 |
| MS.gene04853.t1 | AT5G29000 | 40.141 | 142 | 79 | 3 | 210 | 346 | 219 | 359 | 7.71e-23 | 99.4 |
| MS.gene04853.t1 | AT5G29000 | 40.141 | 142 | 79 | 3 | 210 | 346 | 176 | 316 | 9.19e-23 | 98.6 |
| MS.gene04853.t1 | AT5G29000 | 40.141 | 142 | 79 | 3 | 210 | 346 | 176 | 316 | 9.19e-23 | 98.6 |
| MS.gene04853.t1 | AT3G04450 | 40.909 | 132 | 72 | 2 | 220 | 346 | 236 | 366 | 1.21e-22 | 99.0 |
| MS.gene04853.t1 | AT3G04450 | 40.909 | 132 | 72 | 2 | 220 | 346 | 196 | 326 | 1.50e-22 | 98.2 |
| MS.gene04853.t1 | AT3G04450 | 40.909 | 132 | 72 | 2 | 220 | 346 | 196 | 326 | 1.50e-22 | 98.2 |
| MS.gene04853.t1 | AT4G28610 | 41.497 | 147 | 81 | 3 | 202 | 346 | 208 | 351 | 1.81e-22 | 98.2 |
| MS.gene04853.t1 | AT4G13640 | 36.765 | 136 | 73 | 3 | 222 | 344 | 37 | 172 | 5.99e-17 | 80.9 |
| MS.gene04853.t1 | AT1G79430 | 37.500 | 128 | 74 | 3 | 222 | 344 | 34 | 160 | 1.36e-16 | 80.5 |
| MS.gene04853.t1 | AT2G20400 | 38.686 | 137 | 72 | 3 | 222 | 352 | 231 | 361 | 1.91e-16 | 80.5 |
| MS.gene04853.t1 | AT3G24120 | 36.765 | 136 | 73 | 2 | 222 | 344 | 41 | 176 | 2.25e-16 | 79.3 |
| MS.gene04853.t1 | AT2G20400 | 38.686 | 137 | 73 | 3 | 222 | 352 | 231 | 362 | 4.60e-16 | 79.3 |
| MS.gene04853.t1 | AT3G04030 | 34.965 | 143 | 71 | 3 | 221 | 344 | 44 | 183 | 9.28e-16 | 78.6 |
| MS.gene04853.t1 | AT5G18240 | 34.286 | 140 | 76 | 2 | 221 | 344 | 44 | 183 | 1.54e-15 | 77.8 |
| MS.gene04853.t1 | AT5G18240 | 34.286 | 140 | 76 | 2 | 221 | 344 | 44 | 183 | 1.54e-15 | 77.8 |
| MS.gene04853.t1 | AT5G06800 | 61.667 | 60 | 21 | 1 | 218 | 275 | 186 | 245 | 2.05e-15 | 76.3 |
| MS.gene04853.t1 | AT4G13640 | 35.971 | 139 | 73 | 4 | 222 | 344 | 37 | 175 | 3.65e-15 | 75.5 |
| MS.gene04853.t1 | AT1G69580 | 34.868 | 152 | 75 | 4 | 222 | 351 | 34 | 183 | 1.18e-14 | 74.7 |
| MS.gene04853.t1 | AT3G24120 | 35.971 | 139 | 73 | 3 | 222 | 344 | 41 | 179 | 1.20e-14 | 74.3 |
| MS.gene04853.t1 | AT1G69580 | 33.987 | 153 | 76 | 4 | 222 | 351 | 34 | 184 | 3.83e-14 | 73.2 |
| MS.gene04853.t1 | AT5G29000 | 48.529 | 68 | 35 | 0 | 210 | 277 | 219 | 286 | 7.00e-14 | 72.0 |
| MS.gene04853.t1 | AT3G04450 | 51.724 | 58 | 28 | 0 | 220 | 277 | 236 | 293 | 2.15e-13 | 70.5 |
| MS.gene04853.t1 | AT2G42660 | 60.377 | 53 | 21 | 0 | 224 | 276 | 52 | 104 | 2.24e-13 | 69.7 |
| MS.gene04853.t1 | AT5G18240 | 33.571 | 140 | 75 | 3 | 221 | 344 | 44 | 181 | 2.68e-13 | 70.9 |
| MS.gene04853.t1 | AT3G12730 | 54.098 | 61 | 28 | 0 | 222 | 282 | 23 | 83 | 3.92e-13 | 68.9 |
| MS.gene04853.t1 | AT3G04030 | 33.566 | 143 | 72 | 4 | 221 | 344 | 44 | 182 | 4.86e-13 | 70.1 |
| MS.gene04853.t1 | AT2G06020 | 31.387 | 137 | 80 | 3 | 147 | 275 | 9 | 139 | 1.85e-12 | 67.8 |
| MS.gene04853.t1 | AT4G04605 | 47.619 | 63 | 32 | 1 | 224 | 286 | 16 | 77 | 4.15e-12 | 65.5 |
| MS.gene04853.t1 | AT3G04030 | 33.333 | 126 | 62 | 3 | 221 | 327 | 44 | 166 | 1.34e-11 | 65.9 |
| MS.gene04853.t1 | AT5G18240 | 30.556 | 144 | 79 | 3 | 221 | 343 | 44 | 187 | 1.64e-11 | 65.5 |
| MS.gene04853.t1 | AT5G18240 | 30.556 | 144 | 79 | 3 | 221 | 343 | 44 | 187 | 1.64e-11 | 65.5 |
| MS.gene04853.t1 | AT2G40260 | 54.717 | 53 | 24 | 0 | 224 | 276 | 84 | 136 | 1.76e-11 | 65.5 |
| MS.gene04853.t1 | AT1G14600 | 45.455 | 77 | 38 | 1 | 205 | 277 | 2 | 78 | 4.18e-11 | 63.2 |
| MS.gene04853.t1 | AT4G04555 | 54.902 | 51 | 23 | 0 | 226 | 276 | 18 | 68 | 6.37e-11 | 59.3 |
| MS.gene04853.t1 | AT2G38300 | 56.604 | 53 | 23 | 0 | 224 | 276 | 56 | 108 | 8.95e-11 | 63.2 |
Find 0 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAACAAATAAAAACA+AGG | - | 50884:6707-6726 | MS.gene04853:intergenic | 10.0% |
| !! | AAAACTAAAAAGAAAATCAA+TGG | + | 50884:5499-5518 | MS.gene04853:intron | 15.0% |
| !! | AAATTATTGAAATTGTTGAA+TGG | - | 50884:6129-6148 | MS.gene04853:intergenic | 15.0% |
| !! | AGGAAAATAAACAAATAAAA+AGG | - | 50884:5739-5758 | MS.gene04853:intergenic | 15.0% |
| !! | ATCTAATACTATAATTAAAC+AGG | - | 50884:5178-5197 | MS.gene04853:intergenic | 15.0% |
| !! | GAATCTAATTATGAAATTTA+GGG | + | 50884:5362-5381 | MS.gene04853:intron | 15.0% |
| !! | TCTAATAAAATTGATTAAAG+TGG | + | 50884:5443-5462 | MS.gene04853:intron | 15.0% |
| !! | TGAATCTAATTATGAAATTT+AGG | + | 50884:5361-5380 | MS.gene04853:intron | 15.0% |
| !! | TTACTAGTAATCTATTTATT+CGG | + | 50884:5649-5668 | MS.gene04853:intron | 15.0% |
| !!! | TCATGGATTTTTTTTTTTAA+TGG | + | 50884:5224-5243 | MS.gene04853:intron | 15.0% |
| !! | AAAAACATGATGAATTGTTT+AGG | + | 50884:4937-4956 | MS.gene04853:CDS | 20.0% |
| !! | AAATCCATGAAATACTTAAA+AGG | - | 50884:5214-5233 | MS.gene04853:intergenic | 20.0% |
| !! | AATATACAATTATGCTTTGA+TGG | + | 50884:6611-6630 | MS.gene04853:intron | 20.0% |
| !! | AATTAGATTCATTGCATATA+TGG | - | 50884:5352-5371 | MS.gene04853:intergenic | 20.0% |
| !! | CATTTCATATATAATTCAGA+TGG | - | 50884:5067-5086 | MS.gene04853:intergenic | 20.0% |
| !! | TACTAGTAATCTATTTATTC+GGG | + | 50884:5650-5669 | MS.gene04853:intron | 20.0% |
| !! | TTAGTTAATTACTTACTTTC+TGG | - | 50884:5960-5979 | MS.gene04853:intergenic | 20.0% |
| !!! | AAAAGTAATGTTAGTTTTCA+AGG | + | 50884:4660-4679 | MS.gene04853:CDS | 20.0% |
| !!! | AACAATTCATCATGTTTTTT+CGG | - | 50884:4936-4955 | MS.gene04853:intergenic | 20.0% |
| !!! | AAGAATACTGTAACTTTTTT+TGG | - | 50884:5142-5161 | MS.gene04853:intergenic | 20.0% |
| !!! | ACTAACATTACTTTTGATTT+TGG | - | 50884:4655-4674 | MS.gene04853:intergenic | 20.0% |
| !!! | AGTTGGGAATTTTTTTTTAA+AGG | + | 50884:5543-5562 | MS.gene04853:intron | 20.0% |
| !!! | TCACATAAACATTCTTTTAA+CGG | + | 50884:5466-5485 | MS.gene04853:intron | 20.0% |
| ! | ATTAGAAAAACACGTTAGAT+TGG | - | 50884:5429-5448 | MS.gene04853:intergenic | 25.0% |
| ! | CAAATAAAAACAAGGTTGTA+AGG | - | 50884:6699-6718 | MS.gene04853:intergenic | 25.0% |
| ! | TGGATTATAGCTTATTAGAA+AGG | - | 50884:5759-5778 | MS.gene04853:intergenic | 25.0% |
| !! | AATTTCTTTTCAGAGAACTA+AGG | + | 50884:4992-5011 | MS.gene04853:CDS | 25.0% |
| !! | ATTGTCACTACAAATTTTCA+AGG | + | 50884:4591-4610 | MS.gene04853:CDS | 25.0% |
| !! | GAATATAGTAATTTTCAGTC+TGG | + | 50884:4885-4904 | MS.gene04853:CDS | 25.0% |
| !! | TCTCTGAAAAGAAATTTCAA+GGG | - | 50884:4988-5007 | MS.gene04853:intergenic | 25.0% |
| !! | TTCTCTGAAAAGAAATTTCA+AGG | - | 50884:4989-5008 | MS.gene04853:intergenic | 25.0% |
| !!! | AAATTTAGGGTTTTGTGAAA+GGG | + | 50884:5375-5394 | MS.gene04853:intron | 25.0% |
| !!! | TAGTCCTTTTAAGTATTTCA+TGG | + | 50884:5207-5226 | MS.gene04853:intron | 25.0% |
| !!! | TTTTTTTCTCTTCTGATTAC+TGG | + | 50884:6475-6494 | MS.gene04853:intron | 25.0% |
| AAAGATGTATGGAACTCAAT+GGG | + | 50884:4464-4483 | MS.gene04853:CDS | 30.0% | |
| AAAGGGACAATAATGAATTG+CGG | + | 50884:5392-5411 | MS.gene04853:intron | 30.0% | |
| AAGTTATGGGACTTATAGTT+GGG | + | 50884:5527-5546 | MS.gene04853:intron | 30.0% | |
| ACAACACTGCTTACTTATTA+AGG | + | 50884:6291-6310 | MS.gene04853:intron | 30.0% | |
| ACAATGTTAGAGTCAATTAC+CGG | - | 50884:6181-6200 | MS.gene04853:intergenic | 30.0% | |
| AGGAATTAACAACCTAGTTA+AGG | + | 50884:4497-4516 | MS.gene04853:CDS | 30.0% | |
| AGGTGAAGAATATTATGATG+AGG | + | 50884:4680-4699 | MS.gene04853:CDS | 30.0% | |
| ATCATATCTAGTATAGCCTT+AGG | - | 50884:6048-6067 | MS.gene04853:intergenic | 30.0% | |
| CATGTAAAAGAAGAGTAAGA+TGG | + | 50884:5883-5902 | MS.gene04853:CDS | 30.0% | |
| TAGGTTGTTAATTCCTATGT+AGG | - | 50884:4493-4512 | MS.gene04853:intergenic | 30.0% | |
| TGGTTTCATCTATTTGTGAA+TGG | + | 50884:5244-5263 | MS.gene04853:intron | 30.0% | |
| TTAAGCAAATTGAGGAATCA+CGG | + | 50884:6541-6560 | MS.gene04853:CDS | 30.0% | |
| ! | AAACATTCTTTTAACGGAGT+TGG | + | 50884:5472-5491 | MS.gene04853:intron | 30.0% |
| ! | ATGGCTTTTAACATGAGAAA+TGG | - | 50884:6088-6107 | MS.gene04853:intergenic | 30.0% |
| ! | CTCTGAAAAGAAATTTCAAG+GGG | - | 50884:4987-5006 | MS.gene04853:intergenic | 30.0% |
| ! | CTTACTCTTCTTTTACATGT+TGG | - | 50884:5882-5901 | MS.gene04853:intergenic | 30.0% |
| ! | GAACCAACCAAAGAAAATTT+TGG | + | 50884:6807-6826 | MS.gene04853:CDS | 30.0% |
| ! | GTTGTGTCCAAAATTTTCTT+TGG | - | 50884:6817-6836 | MS.gene04853:intergenic | 30.0% |
| ! | TGTCCAAAATTTTCTTTGGT+TGG | - | 50884:6813-6832 | MS.gene04853:intergenic | 30.0% |
| ! | TTCACTGATTATAATTGCAG+AGG | + | 50884:6017-6036 | MS.gene04853:intron | 30.0% |
| !! | GAAATAGTTTTACCTGCAAA+TGG | - | 50884:6107-6126 | MS.gene04853:intergenic | 30.0% |
| !! | GAAATTTAGGGTTTTGTGAA+AGG | + | 50884:5374-5393 | MS.gene04853:intron | 30.0% |
| AACAACCTAGTTAAGGTTGT+TGG | + | 50884:4504-4523 | MS.gene04853:CDS | 35.0% | |
| AAGTATTTCGCAACAGTTAG+AGG | + | 50884:6587-6606 | MS.gene04853:CDS | 35.0% | |
| AATCAATGGTGTCCAAGTTA+TGG | + | 50884:5513-5532 | MS.gene04853:intron | 35.0% | |
| ACAACCTAGTTAAGGTTGTT+GGG | + | 50884:4505-4524 | MS.gene04853:CDS | 35.0% | |
| ACACTGCTTACTTATTAAGG+AGG | + | 50884:6294-6313 | MS.gene04853:intron | 35.0% | |
| AGAAGCAGAATTGTTAGAAG+TGG | - | 50884:5850-5869 | MS.gene04853:intergenic | 35.0% | |
| AGATTCATCAACAGAGTACA+AGG | - | 50884:4823-4842 | MS.gene04853:intergenic | 35.0% | |
| ATCAATGGTGTCCAAGTTAT+GGG | + | 50884:5514-5533 | MS.gene04853:intron | 35.0% | |
| ATCCATGACTTACTATAGTC+AGG | + | 50884:5774-5793 | MS.gene04853:intron | 35.0% | |
| ATGATAATCGTTGATCACCT+TGG | + | 50884:5930-5949 | MS.gene04853:CDS | 35.0% | |
| ATTTCTCCAACTCGTCAATT+AGG | + | 50884:5698-5717 | MS.gene04853:intron | 35.0% | |
| CAAAGATGTATGGAACTCAA+TGG | + | 50884:4463-4482 | MS.gene04853:CDS | 35.0% | |
| CAACATTGGTCAAAGATGTA+TGG | + | 50884:4453-4472 | MS.gene04853:CDS | 35.0% | |
| CAACTATAAGTCCCATAACT+TGG | - | 50884:5528-5547 | MS.gene04853:intergenic | 35.0% | |
| CAAGTTATGGGACTTATAGT+TGG | + | 50884:5526-5545 | MS.gene04853:intron | 35.0% | |
| CAATATCCTAATTGACGAGT+TGG | - | 50884:5707-5726 | MS.gene04853:intergenic | 35.0% | |
| CATACATCTTTGACCAATGT+TGG | - | 50884:4455-4474 | MS.gene04853:intergenic | 35.0% | |
| CTTCTAACAATTCTGCTTCT+AGG | + | 50884:5850-5869 | MS.gene04853:CDS | 35.0% | |
| GTTGTAAGGATATACGACTT+TGG | - | 50884:6685-6704 | MS.gene04853:intergenic | 35.0% | |
| TCATGTTAAAAGCCATTTGC+AGG | + | 50884:6092-6111 | MS.gene04853:CDS | 35.0% | |
| TGTAAAATTCTCTCCTCCAT+AGG | - | 50884:4781-4800 | MS.gene04853:intergenic | 35.0% | |
| TGTGAATGGTGAATTGTGTT+GGG | + | 50884:5258-5277 | MS.gene04853:intron | 35.0% | |
| TGTGTTCTGATCCAACAATT+TGG | - | 50884:4536-4555 | MS.gene04853:intergenic | 35.0% | |
| TTATCTTTCAGAAAGACCTG+AGG | + | 50884:6345-6364 | MS.gene04853:intron | 35.0% | |
| TTGTGAATGGTGAATTGTGT+TGG | + | 50884:5257-5276 | MS.gene04853:intron | 35.0% | |
| TTGTGATATGGGGAATAAGA+AGG | + | 50884:5285-5304 | MS.gene04853:intron | 35.0% | |
| TTTAGGCAAAATACATCGTG+CGG | - | 50884:5601-5620 | MS.gene04853:intergenic | 35.0% | |
| ! | AATTTTGGACACAACGAGAA+AGG | + | 50884:6822-6841 | MS.gene04853:CDS | 35.0% |
| ! | ATTCTTTTAACGGAGTTGGA+TGG | + | 50884:5476-5495 | MS.gene04853:intron | 35.0% |
| ! | CAAACATCTCATGATGGTTT+TGG | + | 50884:4615-4634 | MS.gene04853:CDS | 35.0% |
| ! | GTGATTCCTCAATTTGCTTA+AGG | - | 50884:6542-6561 | MS.gene04853:intergenic | 35.0% |
| !! | ATGAGATTGAAGTTTCTGGT+TGG | + | 50884:4703-4722 | MS.gene04853:CDS | 35.0% |
| !!! | CATCATGTTTTTTCGGAAAG+TGG | - | 50884:4929-4948 | MS.gene04853:intergenic | 35.0% |
| AAGAAGAGTAAGATGGACAG+AGG | + | 50884:5890-5909 | MS.gene04853:CDS | 40.0% | |
| AAGCAGACTCCTCAACTTAA+TGG | + | 50884:5816-5835 | MS.gene04853:CDS | 40.0% | |
| ACTCAATGGGAATCCTACAT+AGG | + | 50884:4477-4496 | MS.gene04853:CDS | 40.0% | |
| AGCCTGACTATAGTAAGTCA+TGG | - | 50884:5779-5798 | MS.gene04853:intergenic | 40.0% | |
| ATAATCGTTGATCACCTTGG+TGG | + | 50884:5933-5952 | MS.gene04853:CDS | 40.0% | |
| ATAATGAATTGCGGAGGGTA+AGG | + | 50884:5401-5420 | MS.gene04853:intron | 40.0% | |
| ATGCTGAATTGTCAAGCCTA+TGG | + | 50884:4762-4781 | MS.gene04853:CDS | 40.0% | |
| ATTGGAGGGTCTGTTATCTT+TGG | - | 50884:4744-4763 | MS.gene04853:intergenic | 40.0% | |
| CAAGGTCAAACATCTCATGA+TGG | + | 50884:4609-4628 | MS.gene04853:CDS | 40.0% | |
| GAGGATGAGATTGAAGTTTC+TGG | + | 50884:4699-4718 | MS.gene04853:CDS | 40.0% | |
| GCAACTTTCTTTGCGTCTAA+AGG | - | 50884:6736-6755 | MS.gene04853:intergenic | 40.0% | |
| GGACAATAATGAATTGCGGA+GGG | + | 50884:5396-5415 | MS.gene04853:intron | 40.0% | |
| GTAGTGACAATGTTGTTGCA+GGG | - | 50884:4582-4601 | MS.gene04853:intergenic | 40.0% | |
| TAATGAATTGCGGAGGGTAA+GGG | + | 50884:5402-5421 | MS.gene04853:intron | 40.0% | |
| TAGCAGCCTTAAGCAAATTG+AGG | + | 50884:6533-6552 | MS.gene04853:intron | 40.0% | |
| TAGGCTTGACAATTCAGCAT+TGG | - | 50884:4762-4781 | MS.gene04853:intergenic | 40.0% | |
| TGTAGATCGACATTTCTGCA+CGG | - | 50884:6217-6236 | MS.gene04853:intergenic | 40.0% | |
| TGTAGTGACAATGTTGTTGC+AGG | - | 50884:4583-4602 | MS.gene04853:intergenic | 40.0% | |
| TGTTGGGCTGATTGTGATAT+GGG | + | 50884:5274-5293 | MS.gene04853:intron | 40.0% | |
| ! | AGCGCTATTACGTCGATTAA+AGG | + | 50884:5574-5593 | MS.gene04853:intron | 40.0% |
| ! | CTTGACAATTCAGCATTGGA+GGG | - | 50884:4758-4777 | MS.gene04853:intergenic | 40.0% |
| ! | GACGAGTTGGAGAAATTGTT+AGG | - | 50884:5694-5713 | MS.gene04853:intergenic | 40.0% |
| ! | GCACACATTCCATTAAGTTG+AGG | - | 50884:5828-5847 | MS.gene04853:intergenic | 40.0% |
| ! | GCGCTATTACGTCGATTAAA+GGG | + | 50884:5575-5594 | MS.gene04853:intron | 40.0% |
| ! | TCAATTTGCTTAAGGCTGCT+AGG | - | 50884:6534-6553 | MS.gene04853:intergenic | 40.0% |
| ! | TTTTGCACATGCGTGACTTT+AGG | - | 50884:5618-5637 | MS.gene04853:intergenic | 40.0% |
| AATTGCAGAGGCAAAGCCTA+AGG | + | 50884:6029-6048 | MS.gene04853:intron | 45.0% | |
| ACGCATGCATAAAGCTTTGC+AGG | + | 50884:6239-6258 | MS.gene04853:CDS | 45.0% | |
| ACTTACTTTCTGGACCACCA+AGG | - | 50884:5950-5969 | MS.gene04853:intergenic | 45.0% | |
| CAAGGAGTTTGTGAACTGAG+AGG | - | 50884:4805-4824 | MS.gene04853:intergenic | 45.0% | |
| CGCATGCATAAAGCTTTGCA+GGG | + | 50884:6240-6259 | MS.gene04853:CDS | 45.0% | |
| CTGAATTGTCAAGCCTATGG+AGG | + | 50884:4765-4784 | MS.gene04853:CDS | 45.0% | |
| CTGACCCAACAACCTTAACT+AGG | - | 50884:4512-4531 | MS.gene04853:intergenic | 45.0% | |
| CTTTCAGAAAGACCTGAGGA+AGG | + | 50884:6349-6368 | MS.gene04853:intron | 45.0% | |
| GAGTCAATTACCGGCAAATG+AGG | - | 50884:6172-6191 | MS.gene04853:intergenic | 45.0% | |
| GCTTAAGGCTGCTAGGAAAT+AGG | - | 50884:6527-6546 | MS.gene04853:intergenic | 45.0% | |
| GGGACAATAATGAATTGCGG+AGG | + | 50884:5395-5414 | MS.gene04853:intron | 45.0% | |
| GTGTTGGGCTGATTGTGATA+TGG | + | 50884:5273-5292 | MS.gene04853:intron | 45.0% | |
| GTTGGGCTGATTGTGATATG+GGG | + | 50884:5275-5294 | MS.gene04853:intron | 45.0% | |
| GTTGGGTCAGACCAAATTGT+TGG | + | 50884:4522-4541 | MS.gene04853:CDS | 45.0% | |
| TCTGTTCTATGTCCTTCCTC+AGG | - | 50884:6364-6383 | MS.gene04853:intergenic | 45.0% | |
| TTCAAGGGGCTTCTCATCAA+TGG | - | 50884:4973-4992 | MS.gene04853:intergenic | 45.0% | |
| TTCTGTGAAGCCTCATTTGC+CGG | + | 50884:6159-6178 | MS.gene04853:intron | 45.0% | |
| TTGTTGCAGGGTGACTTGAT+TGG | - | 50884:4570-4589 | MS.gene04853:intergenic | 45.0% | |
| ! | GCTTGACAATTCAGCATTGG+AGG | - | 50884:4759-4778 | MS.gene04853:intergenic | 45.0% |
| ATCACGGCAGTTGCATCTAG+AGG | + | 50884:6557-6576 | MS.gene04853:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50884 | gene | 4447 | 6859 | 4447 | ID=MS.gene04853 |
| 50884 | mRNA | 4447 | 6859 | 4447 | ID=MS.gene04853.t1;Parent=MS.gene04853 |
| 50884 | exon | 4447 | 5013 | 4447 | ID=MS.gene04853.t1.exon1;Parent=MS.gene04853.t1 |
| 50884 | CDS | 4447 | 5013 | 4447 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| 50884 | exon | 5792 | 5963 | 5792 | ID=MS.gene04853.t1.exon2;Parent=MS.gene04853.t1 |
| 50884 | CDS | 5792 | 5963 | 5792 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| 50884 | exon | 6037 | 6113 | 6037 | ID=MS.gene04853.t1.exon3;Parent=MS.gene04853.t1 |
| 50884 | CDS | 6037 | 6113 | 6037 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| 50884 | exon | 6222 | 6261 | 6222 | ID=MS.gene04853.t1.exon4;Parent=MS.gene04853.t1 |
| 50884 | CDS | 6222 | 6261 | 6222 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| 50884 | exon | 6356 | 6410 | 6356 | ID=MS.gene04853.t1.exon5;Parent=MS.gene04853.t1 |
| 50884 | CDS | 6356 | 6410 | 6356 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| 50884 | exon | 6539 | 6608 | 6539 | ID=MS.gene04853.t1.exon6;Parent=MS.gene04853.t1 |
| 50884 | CDS | 6539 | 6608 | 6539 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| 50884 | exon | 6740 | 6859 | 6740 | ID=MS.gene04853.t1.exon7;Parent=MS.gene04853.t1 |
| 50884 | CDS | 6740 | 6859 | 6740 | ID=cds.MS.gene04853.t1;Parent=MS.gene04853.t1 |
| Gene Sequence |
| Protein sequence |
