Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048540.t1 | XP_013460339.2 | 93 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 3.60E-79 | 304.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048540.t1 | Q9FJK3 | 48.6 | 173 | 83 | 4 | 1 | 171 | 1 | 169 | 3.9e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048540.t1 | A0A072UL53 | 91.8 | 171 | 14 | 0 | 1 | 171 | 1 | 171 | 1.9e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048540.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048540.t1 | MTR_4g063790 | 91.813 | 171 | 14 | 0 | 1 | 171 | 1 | 171 | 1.54e-112 | 317 |
| MS.gene048540.t1 | MTR_3g465410 | 93.007 | 143 | 10 | 0 | 29 | 171 | 1 | 143 | 3.61e-95 | 272 |
| MS.gene048540.t1 | MTR_3g467080 | 78.882 | 161 | 34 | 0 | 1 | 161 | 1 | 161 | 1.91e-88 | 256 |
| MS.gene048540.t1 | MTR_3g466980 | 53.488 | 172 | 77 | 2 | 1 | 170 | 1 | 171 | 2.79e-59 | 184 |
| MS.gene048540.t1 | MTR_3g031240 | 50.920 | 163 | 80 | 0 | 1 | 163 | 1 | 163 | 6.19e-54 | 169 |
| MS.gene048540.t1 | MTR_2g016210 | 45.509 | 167 | 91 | 0 | 1 | 167 | 1 | 167 | 6.07e-48 | 156 |
| MS.gene048540.t1 | MTR_3g065100 | 51.266 | 158 | 76 | 1 | 1 | 158 | 1 | 157 | 9.72e-46 | 150 |
| MS.gene048540.t1 | MTR_3g031100 | 45.509 | 167 | 91 | 0 | 1 | 167 | 1 | 167 | 8.39e-45 | 148 |
| MS.gene048540.t1 | MTR_5g075380 | 41.875 | 160 | 86 | 2 | 1 | 157 | 1 | 156 | 4.66e-42 | 138 |
| MS.gene048540.t1 | MTR_4g032620 | 40.000 | 165 | 99 | 0 | 1 | 165 | 1 | 165 | 1.41e-41 | 139 |
| MS.gene048540.t1 | MTR_8g036130 | 41.477 | 176 | 92 | 2 | 1 | 165 | 1 | 176 | 1.56e-40 | 137 |
| MS.gene048540.t1 | MTR_2g035580 | 47.097 | 155 | 81 | 1 | 1 | 155 | 1 | 154 | 3.95e-40 | 133 |
| MS.gene048540.t1 | MTR_4g031910 | 42.424 | 165 | 95 | 0 | 1 | 165 | 1 | 165 | 1.20e-37 | 129 |
| MS.gene048540.t1 | MTR_5g047580 | 42.038 | 157 | 89 | 2 | 1 | 157 | 1 | 155 | 6.19e-37 | 125 |
| MS.gene048540.t1 | MTR_4g032290 | 41.818 | 165 | 96 | 0 | 1 | 165 | 1 | 165 | 6.32e-36 | 125 |
| MS.gene048540.t1 | MTR_1g077390 | 40.881 | 159 | 92 | 2 | 1 | 159 | 1 | 157 | 3.73e-34 | 118 |
| MS.gene048540.t1 | MTR_3g466830 | 40.000 | 155 | 92 | 1 | 3 | 157 | 2 | 155 | 5.25e-34 | 117 |
| MS.gene048540.t1 | MTR_4g032260 | 38.365 | 159 | 98 | 0 | 1 | 159 | 1 | 159 | 1.35e-32 | 114 |
| MS.gene048540.t1 | MTR_2g035610 | 47.863 | 117 | 61 | 0 | 1 | 117 | 1 | 117 | 2.19e-32 | 112 |
| MS.gene048540.t1 | MTR_1g090783 | 38.158 | 152 | 92 | 2 | 3 | 154 | 2 | 151 | 1.25e-30 | 109 |
| MS.gene048540.t1 | MTR_4g028720 | 40.252 | 159 | 93 | 2 | 1 | 159 | 1 | 157 | 1.32e-30 | 109 |
| MS.gene048540.t1 | MTR_1g084950 | 40.127 | 157 | 92 | 2 | 1 | 157 | 1 | 155 | 2.06e-30 | 108 |
| MS.gene048540.t1 | MTR_1g077320 | 40.252 | 159 | 93 | 2 | 1 | 159 | 1 | 157 | 2.58e-30 | 108 |
| MS.gene048540.t1 | MTR_7g011950 | 39.623 | 159 | 94 | 2 | 1 | 159 | 1 | 157 | 9.65e-30 | 107 |
| MS.gene048540.t1 | MTR_1g077300 | 39.752 | 161 | 93 | 2 | 1 | 161 | 1 | 157 | 2.87e-29 | 105 |
| MS.gene048540.t1 | MTR_3g466890 | 36.774 | 155 | 97 | 1 | 3 | 157 | 2 | 155 | 3.23e-28 | 103 |
| MS.gene048540.t1 | MTR_1g090710 | 35.714 | 154 | 98 | 1 | 1 | 154 | 1 | 153 | 2.43e-27 | 100 |
| MS.gene048540.t1 | MTR_1g090697 | 36.538 | 156 | 93 | 4 | 1 | 154 | 1 | 152 | 6.67e-27 | 99.8 |
| MS.gene048540.t1 | MTR_5g047560 | 35.714 | 154 | 81 | 3 | 1 | 154 | 1 | 136 | 7.74e-22 | 86.3 |
| MS.gene048540.t1 | MTR_3g466930 | 34.921 | 126 | 81 | 1 | 32 | 157 | 2 | 126 | 1.07e-19 | 80.5 |
| MS.gene048540.t1 | MTR_4g028800 | 47.222 | 72 | 36 | 1 | 1 | 72 | 1 | 70 | 1.90e-19 | 78.2 |
| MS.gene048540.t1 | MTR_3g466900 | 33.333 | 126 | 83 | 1 | 32 | 157 | 2 | 126 | 5.90e-18 | 75.9 |
| MS.gene048540.t1 | MTR_7g055800 | 35.043 | 117 | 48 | 2 | 1 | 117 | 1 | 89 | 2.27e-16 | 70.5 |
| MS.gene048540.t1 | MTR_7g106510 | 30.345 | 145 | 83 | 4 | 1 | 139 | 1 | 133 | 4.78e-16 | 75.1 |
| MS.gene048540.t1 | MTR_4g019670 | 31.206 | 141 | 84 | 3 | 1 | 135 | 1 | 134 | 1.53e-15 | 73.6 |
| MS.gene048540.t1 | MTR_6g018920 | 27.500 | 160 | 101 | 4 | 1 | 154 | 1 | 151 | 1.00e-14 | 70.9 |
| MS.gene048540.t1 | MTR_7g055940 | 34.906 | 106 | 41 | 2 | 1 | 106 | 1 | 78 | 1.23e-14 | 65.9 |
| MS.gene048540.t1 | MTR_7g055790 | 37.615 | 109 | 50 | 3 | 1 | 109 | 59 | 149 | 3.16e-14 | 66.6 |
| MS.gene048540.t1 | MTR_3g093900 | 31.313 | 99 | 68 | 0 | 5 | 103 | 8 | 106 | 9.40e-14 | 68.6 |
| MS.gene048540.t1 | MTR_1g114730 | 27.044 | 159 | 101 | 4 | 1 | 153 | 1 | 150 | 6.63e-13 | 65.9 |
| MS.gene048540.t1 | MTR_6g005440 | 28.750 | 160 | 99 | 4 | 1 | 154 | 1 | 151 | 7.17e-13 | 65.5 |
| MS.gene048540.t1 | MTR_6g005450 | 28.750 | 160 | 99 | 4 | 1 | 154 | 1 | 151 | 1.56e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048540.t1 | AT5G48670 | 51.592 | 157 | 71 | 3 | 1 | 155 | 1 | 154 | 3.44e-41 | 140 |
| MS.gene048540.t1 | AT3G05860 | 40.116 | 172 | 98 | 2 | 1 | 170 | 1 | 169 | 8.25e-34 | 119 |
| MS.gene048540.t1 | AT3G05860 | 40.116 | 172 | 98 | 2 | 1 | 170 | 1 | 169 | 1.63e-33 | 119 |
| MS.gene048540.t1 | AT3G05860 | 40.116 | 172 | 98 | 2 | 1 | 170 | 1 | 169 | 2.03e-33 | 119 |
| MS.gene048540.t1 | AT1G65330 | 41.830 | 153 | 88 | 1 | 3 | 155 | 2 | 153 | 1.08e-32 | 117 |
| MS.gene048540.t1 | AT1G65300 | 40.252 | 159 | 93 | 2 | 5 | 163 | 4 | 160 | 3.02e-30 | 111 |
| MS.gene048540.t1 | AT5G27810 | 52.809 | 89 | 42 | 0 | 29 | 117 | 1 | 89 | 4.31e-29 | 104 |
| MS.gene048540.t1 | AT5G26650 | 36.943 | 157 | 90 | 2 | 5 | 157 | 3 | 154 | 3.75e-28 | 107 |
| MS.gene048540.t1 | AT1G31630 | 36.943 | 157 | 95 | 3 | 3 | 158 | 2 | 155 | 5.59e-28 | 107 |
| MS.gene048540.t1 | AT5G27960 | 45.872 | 109 | 59 | 0 | 5 | 113 | 3 | 111 | 3.28e-27 | 104 |
| MS.gene048540.t1 | AT1G31640 | 39.506 | 162 | 84 | 4 | 3 | 158 | 2 | 155 | 1.24e-26 | 104 |
| MS.gene048540.t1 | AT1G22590 | 40.708 | 113 | 67 | 0 | 1 | 113 | 1 | 113 | 3.45e-26 | 98.2 |
| MS.gene048540.t1 | AT5G26630 | 38.312 | 154 | 94 | 1 | 1 | 154 | 1 | 153 | 4.29e-26 | 99.4 |
| MS.gene048540.t1 | AT2G28700 | 32.386 | 176 | 108 | 4 | 1 | 171 | 1 | 170 | 5.68e-21 | 87.8 |
| MS.gene048540.t1 | AT5G06500 | 29.936 | 157 | 102 | 3 | 1 | 154 | 1 | 152 | 3.71e-20 | 84.3 |
| MS.gene048540.t1 | AT2G40210 | 36.634 | 101 | 64 | 0 | 1 | 101 | 1 | 101 | 1.72e-15 | 73.2 |
| MS.gene048540.t1 | AT5G26580 | 38.235 | 102 | 49 | 1 | 1 | 102 | 1 | 88 | 8.17e-15 | 71.2 |
| MS.gene048540.t1 | AT5G55690 | 35.294 | 102 | 59 | 3 | 1 | 95 | 1 | 102 | 2.39e-11 | 60.8 |
| MS.gene048540.t1 | AT5G55690 | 35.294 | 102 | 59 | 3 | 1 | 95 | 1 | 102 | 2.39e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCATCTTTC+TGG | 0.077675 | 3.3:+52869954 | None:intergenic |
| ATTCAAACCATAGAATTTAA+TGG | 0.173791 | 3.3:-52869916 | MS.gene048540:CDS |
| CGAATTTCCATTAAATTCTA+TGG | 0.218755 | 3.3:+52869909 | None:intergenic |
| GAGGTTTGGCCATCAGATTC+AGG | 0.258145 | 3.3:-52870111 | MS.gene048540:CDS |
| CGCTACCATGACTAGAAATA+AGG | 0.322931 | 3.3:-52870508 | None:intergenic |
| CAAGAGGAGGTTGGAAATGA+GGG | 0.355119 | 3.3:-52869793 | MS.gene048540:CDS |
| TCTTCTTGAGGCAAAACATT+AGG | 0.355934 | 3.3:-52870014 | MS.gene048540:CDS |
| AATATAATGATCAATGATAT+TGG | 0.368342 | 3.3:+52869936 | None:intergenic |
| GAAGTGTGATATCTAGGTTT+AGG | 0.426765 | 3.3:-52870083 | MS.gene048540:CDS |
| TCAAGAGGAGGTTGGAAATG+AGG | 0.431693 | 3.3:-52869794 | MS.gene048540:CDS |
| GGGTCAGAAGTGTGATATCT+AGG | 0.436600 | 3.3:-52870089 | MS.gene048540:CDS |
| TCTAGGTTTAGGAGTTTGCC+TGG | 0.445921 | 3.3:-52870072 | MS.gene048540:CDS |
| AGAATTTGAAGGAGGTTGAT+CGG | 0.478161 | 3.3:-52869843 | MS.gene048540:CDS |
| ACAACCCTCGAGTAGAGGTT+TGG | 0.487846 | 3.3:-52870125 | MS.gene048540:CDS |
| AGGTTTGGCCATCAGATTCA+GGG | 0.511068 | 3.3:-52870110 | MS.gene048540:CDS |
| ACGAGCAGTTGAAGAAGCAA+AGG | 0.512962 | 3.3:-52869984 | MS.gene048540:CDS |
| AAGGGAGGAAACCAGAAAGA+TGG | 0.513695 | 3.3:-52869965 | MS.gene048540:CDS |
| TTTCACCTTATTTCTAGTCA+TGG | 0.525434 | 3.3:+52870503 | None:intergenic |
| GGAGGATAACATTCAGAAAG+AGG | 0.525464 | 3.3:-52870452 | MS.gene048540:CDS |
| ATCAAAGATCAAGAGGAGGT+TGG | 0.534167 | 3.3:-52869802 | MS.gene048540:CDS |
| AATGACAATCAAAGATCAAG+AGG | 0.572865 | 3.3:-52869809 | MS.gene048540:CDS |
| CGAGCAGTTGAAGAAGCAAA+GGG | 0.580872 | 3.3:-52869983 | MS.gene048540:CDS |
| ACATGCTTCGACTCCACATA+GGG | 0.581479 | 3.3:+52870167 | None:intergenic |
| AAGAGGAGGTTGGAAATGAG+GGG | 0.584160 | 3.3:-52869792 | MS.gene048540:CDS |
| TATTGATGAGAATTTGAAGG+AGG | 0.592173 | 3.3:-52869851 | MS.gene048540:CDS |
| CACATGCTTCGACTCCACAT+AGG | 0.603214 | 3.3:+52870166 | None:intergenic |
| AATGAAATTAGCACCCTATG+TGG | 0.604835 | 3.3:-52870180 | MS.gene048540:CDS |
| AGAGGAGGTTGGAAATGAGG+GGG | 0.608627 | 3.3:-52869791 | MS.gene048540:CDS |
| GCAAAACAACCCTCGAGTAG+AGG | 0.609086 | 3.3:-52870130 | MS.gene048540:CDS |
| CTTCTGACCCCTGAATCTGA+TGG | 0.624024 | 3.3:+52870102 | None:intergenic |
| ACATAACAAGTGACTCGAAG+AGG | 0.633454 | 3.3:-52870473 | MS.gene048540:CDS |
| GATGGCCAAACCTCTACTCG+AGG | 0.634480 | 3.3:+52870120 | None:intergenic |
| GAGGAGGTTGGAAATGAGGG+GGG | 0.643505 | 3.3:-52869790 | MS.gene048540:CDS |
| GACAATCAAAGATCAAGAGG+AGG | 0.656411 | 3.3:-52869806 | MS.gene048540:CDS |
| GGTTTGGCCATCAGATTCAG+GGG | 0.657992 | 3.3:-52870109 | MS.gene048540:CDS |
| ATGGCCAAACCTCTACTCGA+GGG | 0.659257 | 3.3:+52870121 | None:intergenic |
| TAACAAGTGACTCGAAGAGG+AGG | 0.659370 | 3.3:-52870470 | MS.gene048540:CDS |
| GCAGTTGAAGAAGCAAAGGG+AGG | 0.693727 | 3.3:-52869980 | MS.gene048540:CDS |
| TGGATCAGGAGGTCTTCTTG+AGG | 0.700337 | 3.3:-52870026 | MS.gene048540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATACATTTTTTTTAAT+AGG | - | chr3.3:52870065-52870084 | MS.gene048540:CDS | 10.0% |
| !! | AATAAACAATATATAATCGA+TGG | + | chr3.3:52870046-52870065 | None:intergenic | 15.0% |
| !! | AATATAATGATCAATGATAT+TGG | + | chr3.3:52870351-52870370 | None:intergenic | 15.0% |
| !! | ATTCAAACCATAGAATTTAA+TGG | - | chr3.3:52870368-52870387 | MS.gene048540:intron | 20.0% |
| !!! | TTTTATTGATGAGAATTTGA+AGG | - | chr3.3:52870430-52870449 | MS.gene048540:intron | 20.0% |
| ! | ACATGAACAAAGTAAAAAGA+TGG | - | chr3.3:52870235-52870254 | MS.gene048540:intron | 25.0% |
| ! | CGAATTTCCATTAAATTCTA+TGG | + | chr3.3:52870378-52870397 | None:intergenic | 25.0% |
| ! | TGTTAACATGTGATATTTCT+AGG | + | chr3.3:52869941-52869960 | None:intergenic | 25.0% |
| !! | TACATGCTTTGTTGAAATTA+TGG | + | chr3.3:52869881-52869900 | None:intergenic | 25.0% |
| !!! | TGTGATATTTCTAGGAAAAA+AGG | + | chr3.3:52869933-52869952 | None:intergenic | 25.0% |
| AATGACAATCAAAGATCAAG+AGG | - | chr3.3:52870475-52870494 | MS.gene048540:CDS | 30.0% | |
| ACATTCAGAAAGAGGAAAAA+TGG | - | chr3.3:52869840-52869859 | MS.gene048540:CDS | 30.0% | |
| TATTGATGAGAATTTGAAGG+AGG | - | chr3.3:52870433-52870452 | MS.gene048540:intron | 30.0% | |
| TGAACAAAGTAAAAAGATGG+TGG | - | chr3.3:52870238-52870257 | MS.gene048540:intron | 30.0% | |
| ! | TTTTTACTTTGTTCATGTCC+AGG | + | chr3.3:52870233-52870252 | None:intergenic | 30.0% |
| AATGAAATTAGCACCCTATG+TGG | - | chr3.3:52870104-52870123 | MS.gene048540:CDS | 35.0% | |
| ATTGGTCATTTCCATCTTTC+TGG | + | chr3.3:52870333-52870352 | None:intergenic | 35.0% | |
| GAAGTGTGATATCTAGGTTT+AGG | - | chr3.3:52870201-52870220 | MS.gene048540:intron | 35.0% | |
| TCTTCTTGAGGCAAAACATT+AGG | - | chr3.3:52870270-52870289 | MS.gene048540:intron | 35.0% | |
| ! | AGAATTTGAAGGAGGTTGAT+CGG | - | chr3.3:52870441-52870460 | MS.gene048540:intron | 35.0% |
| ! | GCTTTGTTGAAATTATGGAG+AGG | + | chr3.3:52869876-52869895 | None:intergenic | 35.0% |
| !! | AAGTAAAAAGATGGTGGATC+AGG | - | chr3.3:52870244-52870263 | MS.gene048540:intron | 35.0% |
| ACATAACAAGTGACTCGAAG+AGG | - | chr3.3:52869811-52869830 | MS.gene048540:CDS | 40.0% | |
| ATCAAAGATCAAGAGGAGGT+TGG | - | chr3.3:52870482-52870501 | MS.gene048540:CDS | 40.0% | |
| GACAATCAAAGATCAAGAGG+AGG | - | chr3.3:52870478-52870497 | MS.gene048540:CDS | 40.0% | |
| GGAGGATAACATTCAGAAAG+AGG | - | chr3.3:52869832-52869851 | MS.gene048540:CDS | 40.0% | |
| !! | TAAAAAGATGGTGGATCAGG+AGG | - | chr3.3:52870247-52870266 | MS.gene048540:intron | 40.0% |
| AAGAGGAGGTTGGAAATGAG+GGG | - | chr3.3:52870492-52870511 | MS.gene048540:CDS | 45.0% | |
| AAGGGAGGAAACCAGAAAGA+TGG | - | chr3.3:52870319-52870338 | MS.gene048540:intron | 45.0% | |
| ACATGCTTCGACTCCACATA+GGG | + | chr3.3:52870120-52870139 | None:intergenic | 45.0% | |
| ACGAGCAGTTGAAGAAGCAA+AGG | - | chr3.3:52870300-52870319 | MS.gene048540:intron | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | - | chr3.3:52870174-52870193 | MS.gene048540:CDS | 45.0% | |
| CAAGAGGAGGTTGGAAATGA+GGG | - | chr3.3:52870491-52870510 | MS.gene048540:CDS | 45.0% | |
| CGAGCAGTTGAAGAAGCAAA+GGG | - | chr3.3:52870301-52870320 | MS.gene048540:intron | 45.0% | |
| TAACAAGTGACTCGAAGAGG+AGG | - | chr3.3:52869814-52869833 | MS.gene048540:CDS | 45.0% | |
| TCAAGAGGAGGTTGGAAATG+AGG | - | chr3.3:52870490-52870509 | MS.gene048540:CDS | 45.0% | |
| TCTAGGTTTAGGAGTTTGCC+TGG | - | chr3.3:52870212-52870231 | MS.gene048540:intron | 45.0% | |
| ! | GGGTCAGAAGTGTGATATCT+AGG | - | chr3.3:52870195-52870214 | MS.gene048540:CDS | 45.0% |
| ACAACCCTCGAGTAGAGGTT+TGG | - | chr3.3:52870159-52870178 | MS.gene048540:CDS | 50.0% | |
| AGAGGAGGTTGGAAATGAGG+GGG | - | chr3.3:52870493-52870512 | MS.gene048540:CDS | 50.0% | |
| ATGGCCAAACCTCTACTCGA+GGG | + | chr3.3:52870166-52870185 | None:intergenic | 50.0% | |
| CACATGCTTCGACTCCACAT+AGG | + | chr3.3:52870121-52870140 | None:intergenic | 50.0% | |
| CTTCTGACCCCTGAATCTGA+TGG | + | chr3.3:52870185-52870204 | None:intergenic | 50.0% | |
| GAGGTTTGGCCATCAGATTC+AGG | - | chr3.3:52870173-52870192 | MS.gene048540:CDS | 50.0% | |
| GCAAAACAACCCTCGAGTAG+AGG | - | chr3.3:52870154-52870173 | MS.gene048540:CDS | 50.0% | |
| GCAGTTGAAGAAGCAAAGGG+AGG | - | chr3.3:52870304-52870323 | MS.gene048540:intron | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | - | chr3.3:52870175-52870194 | MS.gene048540:CDS | 50.0% | |
| TGGATCAGGAGGTCTTCTTG+AGG | - | chr3.3:52870258-52870277 | MS.gene048540:intron | 50.0% | |
| GAGGAGGTTGGAAATGAGGG+GGG | - | chr3.3:52870494-52870513 | MS.gene048540:CDS | 55.0% | |
| GATGGCCAAACCTCTACTCG+AGG | + | chr3.3:52870167-52870186 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 52869783 | 52870523 | 52869783 | ID=MS.gene048540 |
| chr3.3 | mRNA | 52869783 | 52870523 | 52869783 | ID=MS.gene048540.t1;Parent=MS.gene048540 |
| chr3.3 | exon | 52870445 | 52870523 | 52870445 | ID=MS.gene048540.t1.exon1;Parent=MS.gene048540.t1 |
| chr3.3 | CDS | 52870445 | 52870523 | 52870445 | ID=cds.MS.gene048540.t1;Parent=MS.gene048540.t1 |
| chr3.3 | exon | 52869783 | 52870219 | 52869783 | ID=MS.gene048540.t1.exon2;Parent=MS.gene048540.t1 |
| chr3.3 | CDS | 52869783 | 52870219 | 52869783 | ID=cds.MS.gene048540.t1;Parent=MS.gene048540.t1 |
| Gene Sequence |
| Protein sequence |
