AlfalfaGEDB | MS.gene048583

M. sativa cultivar XinJiangDaYe / MS.gene048583

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048583.t1	XP_003599310.1	89.2	734	19	1	1	674	77	810	0.00E+00	1318.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048583.t1	P17801	36.4	745	375	16	2	668	90	813	5.0e-117	423.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048583.t1	G7J0P3	89.2	734	19	1	1	674	77	810	0.0e+00	1318.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene048583.t1	MTR_3g031470	89.101	734	20	2	1	674	77	810	1333
MS.gene048583.t1	MTR_3g031480	68.114	737	161	10	1	673	78	804	981
MS.gene048583.t1	MTR_3g031490	67.075	735	152	13	1	667	75	787	941
MS.gene048583.t1	MTR_3g031640	62.978	732	193	13	1	667	75	793	886
MS.gene048583.t1	MTR_3g031600	62.500	736	201	10	1	673	75	798	874
MS.gene048583.t1	MTR_3g031610	61.633	735	206	9	1	673	75	795	872
MS.gene048583.t1	MTR_3g031500	63.115	732	178	12	1	668	1	704	853
MS.gene048583.t1	MTR_3g031580	61.885	732	189	16	1	668	78	783	830
MS.gene048583.t1	MTR_7g058550	55.310	725	245	11	1	667	83	786	758
MS.gene048583.t1	MTR_7g053050	55.450	734	243	13	1	672	83	794	746

Showing 1 to 10 of 515 entries

Previous1 2 3 4 5…52Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048583.t1	AT1G34300	31.939	717	384	22	12	667	83	756	9.21e-90	298
MS.gene048583.t1	AT4G00340	40.431	371	180	12	319	667	408	759	1.79e-73	253
MS.gene048583.t1	AT4G00340	39.098	133	69	6	1	131	71	193	3.19e-13	73.6
MS.gene048583.t1	AT4G00340	39.791	382	187	13	310	667	376	738	5.09e-73	251
MS.gene048583.t1	AT4G00340	39.098	133	69	6	1	131	71	193	3.34e-13	73.6
MS.gene048583.t1	AT2G19130	43.750	304	137	8	378	667	483	766	1.94e-72	251
MS.gene048583.t1	AT2G19130	32.536	209	118	8	1	197	74	271	1.51e-17	87.4
MS.gene048583.t1	AT4G32300	41.925	322	164	9	354	667	458	764	4.83e-72	249
MS.gene048583.t1	AT5G35370	41.914	303	157	7	376	664	503	800	4.62e-70	245
MS.gene048583.t1	AT5G38560	43.390	295	155	5	378	667	327	614	2.84e-69	239

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Find 136 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATAACATTGCTAT+GGG	0.541542	3.3:-53445654	MS.gene048583:CDS
AAACCAAAATCCGCTACCTT+AGG	0.483013	3.3:+53445531	None:intergenic
AAAGTGGATGTTTATAGCTA+CGG	0.513820	3.3:-53445399	MS.gene048583:CDS
AAATTATGATGTAAAGAAGA+TGG	0.500989	3.3:-53445205	MS.gene048583:CDS
AACCTCGTTAGGGTTTGGTC+CGG	0.525765	3.3:+53447033	None:intergenic
AACTTTGGCAAATGTTGCTT+TGG	0.360789	3.3:-53445181	MS.gene048583:CDS
AAGAAGAGTTGTGTCATGAG+AGG	0.601728	3.3:-53445314	MS.gene048583:CDS
AAGGATTAGAAGTTGGTTGC+TGG	0.391650	3.3:-53445260	MS.gene048583:CDS
AAGTTCATGCTTTGGTTTGC+AGG	0.298193	3.3:-53446110	MS.gene048583:CDS
AAGTTGTTGAGAGGCTATTA+AGG	0.260515	3.3:-53445116	MS.gene048583:CDS

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGGATGTTTATAGCTA+CGG	-	chr3.3:53446978-53446997	MS.gene048583:CDS	30.0%
AATGATCAAGATAGTTCTCA+AGG	-	chr3.3:53445838-53445857	MS.gene048583:CDS	30.0%
ACAAATTGTTGACCCTAAAT+TGG	-	chr3.3:53447145-53447164	MS.gene048583:CDS	30.0%
ACATGAATTTGATAGGAATG+TGG	-	chr3.3:53446601-53446620	MS.gene048583:intron	30.0%
AGAAGAAAAGGATTAGAAGT+TGG	-	chr3.3:53447110-53447129	MS.gene048583:CDS	30.0%
AGTAGAAAAGATGAGGAAAA+TGG	-	chr3.3:53445686-53445705	MS.gene048583:CDS	30.0%
ATGAATTTGATAGGAATGTG+GGG	-	chr3.3:53446603-53446622	MS.gene048583:intron	30.0%
CAAATTCCATGAATGAAACA+AGG	+	chr3.3:53445742-53445761	None:intergenic	30.0%
CAAATTGTTGACCCTAAATT+GGG	-	chr3.3:53447146-53447165	MS.gene048583:CDS	30.0%
CAATAAATGCTAGAAACTCT+CGG	+	chr3.3:53445470-53445489	None:intergenic	30.0%

Showing 1 to 10 of 177 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	53445098	53447301	53445098	ID=MS.gene048583
chr3.3	mRNA	53445098	53447301	53445098	ID=MS.gene048583.t1;Parent=MS.gene048583
chr3.3	exon	53446688	53447301	53446688	ID=MS.gene048583.t1.exon1;Parent=MS.gene048583.t1
chr3.3	CDS	53446688	53447301	53446688	ID=cds.MS.gene048583.t1;Parent=MS.gene048583.t1
chr3.3	exon	53445098	53446508	53445098	ID=MS.gene048583.t1.exon2;Parent=MS.gene048583.t1
chr3.3	CDS	53445098	53446508	53445098	ID=cds.MS.gene048583.t1;Parent=MS.gene048583.t1

Gene Sequence

>MS.gene048583

ATGGCAAATCGTGACCAACCAGTTAACGGAAAACGCTCAACACTTTCCCTTCTCAAAACTGGAAACCTCGTCTTAACAGACGCAGCTCAATCCATTGTTTGGTCCACAGACACCACCTCAACAAAACCACTTGAATTAATCCTACATGAAACAGGTAACCTTGTTCTTCAAGAACAAAATACAAACGGTTCAAGAAAAAGAAACATTCTATGGCAAAGTTTTGACTTCCCAACAGATACACTTTTGCCGGACCAAACCCTAACGAGGTTCACGAACCTCGTTTCATCAAGAAGTCAGACGAACTATTCGTCTGGCTTCTACAAACTATTTTTTGACAATGATAACGTTCTTCGTCTTTTATACCAAGGACCGAGAGTTTCTAGCATTTATTGGCCGGATCCTTGGACTACAAGCAATGGTGCTGCCGGTAGTGGTACAAGAAGTACTTACAATAGTAGTAGAATCGCGTCGTTGGATTCATTTGGTAGTTTTAGTTCATCTGATGATTTTGTTTTTAATACTGCTGATTATGGAACTTTTTTGCAACGTAGACTTACACTTGATCATGATGGTAACGTTCGCATTTATAGTAGAAAAGATGAGGAAAATGGTTGGTTTGTTTCGGTCAATTTCGTCAACAACCTTGTTTCATTCATGGAATTTGTGGGCCTAATAGTACTTGTAGTAATGATCCTTTGACTGGTAGAAAGTGTTCTTGTCTACCTGGTTATGTTTGGATTAATGATCAAGATAGTTCTCAAGGTTGTAGACCCAATTTTGAACTTTCTTGTAGTAACAAGACTCATGATGAGTTAAGTTTTTTGGCTTTGTCTCATGTTGATTTTTATGGATATGATTACGGGTTTTACACGAATAAAACTTACAAAGAGTGTGAGAGTTTGTGTGCACAATTGTGTGATTGTGCAGGATTTCAGTATACTTTTACAGCTGAATATGGTGGTGTTTATTGGTGTTATCCGAAAATTCAGTTACTTAACGGTCATCGTTCGCAGAGTTTTCTTGGATCGTTCTACTTAAAATTGCCGAAAAGTAGTGGTTTTGTTGATGAGATTAGGATTCAACAAAATAGCAGTGGAATGGTTTGTGAGAGGAATGGAGTGGTAAAGCTTGACAGAGAATACATGAAGAAGAAAGAAAACGGTTCATTGAAGTTCATGCTTTGGTTTGCAGGTGGTTTAGGAGGAGTAGAGCTTTTGGGATTTTTTATGGTTTGGTTTTTCTTGTTTAGGAGTAGCAAAAATTCTGATGAGAATCATGATTATGTTCTAGCAGCAACAGGGTTTAGGAAATTCAGTTACTCTGAATTGAAACAAGCTACAAAAGGTTTTAGTCAAGAGATCGGACGAGGTGCCGGAGGAACTGTGTATAAGGGTGTTTTATCTGATAATCGAGTTGCTGCGATAAAGCGTCTGCATGAAGCAAATGAAGGTGAGAGTGAAAGTGAGTTTCTTGCTGAAGTTAGCATCATTGGAAGGCTTAATCACATGAATTTGATAGGAATGTGGGGTTATTGTGCAGAGGGAAAACACAGATTGTTGGTTTATGAGTACATGGAAAATGGTACTTTAGCTGATAATCTCTCATCAAATGAACTTGATTGGGGTAAAAGGTATAACATTGCTATGGGAACTGCAAAGGGTCTTGCGTATTTACACGAAGAATGTCTGGAGTGGATTTTGCATTGCGATATAAAGCCGCAAAACATACTTGTTGATTCCGATTACCAACCTAAGGTAGCGGATTTTGGTTTGTCCAAGCTATTGAACAGGGATGACCTTGATAATTCAAATTTCTCGAGGATTCGAGGGACAAGAGGTTACATGGCACCTGAATGGGTTTTCAACATGCAAATCACTTCAAAAGTGGATGTTTATAGCTACGGAGTTGTGGTGTTGGAGATGATTACCGGAAAGAGTCCAACAACCGGTATCCAAATCAAAGATAAAGAAGAGTTGTGTCATGAGAGGTTGGTAACATGGGTTAGGGAGAAAAGAAGAAAAGGATTAGAAGTTGGTTGCTGGGTGGAACAAATTGTTGACCCTAAATTGGGATCAAATTATGATGTAAAGAAGATGGAAACTTTGGCAAATGTTGCTTTGGATTGTGTACAAGAAGATAAAGATGTTAGACCCACCATGAGTCAAGTTGTTGAGAGGCTATTAAGGGATGAGCAAAATTATTGA

Protein sequence

>MS.gene048583.t1

MANRDQPVNGKRSTLSLLKTGNLVLTDAAQSIVWSTDTTSTKPLELILHETGNLVLQEQNTNGSRKRNILWQSFDFPTDTLLPDQTLTRFTNLVSSRSQTNYSSGFYKLFFDNDNVLRLLYQGPRVSSIYWPDPWTTSNGAAGSGTRSTYNSSRIASLDSFGSFSSSDDFVFNTADYGTFLQRRLTLDHDGNVRIYSRKDEENGCNKTHDELSFLALSHVDFYGYDYGFYTNKTYKECESLCAQLCDCAGFQYTFTAEYGGVYWCYPKIQLLNGHRSQSFLGSFYLKLPKSSGFVDEIRIQQNSSGMVCERNGVVKLDREYMKKKENGSLKFMLWFAGGLGGVELLGFFMVWFFLFRSSKNSDENHDYVLAATGFRKFSYSELKQATKGFSQEIGRGAGGTVYKGVLSDNRVAAIKRLHEANEGESESEFLAEVSIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGTLADNLSSNELDWGKRYNIAMGTAKGLAYLHEECLEWILHCDIKPQNILVDSDYQPKVADFGLSKLLNRDDLDNSNFSRIRGTRGYMAPEWVFNMQITSKVDVYSYGVVVLEMITGKSPTTGIQIKDKEELCHERLVTWVREKRRKGLEVGCWVEQIVDPKLGSNYDVKKMETLANVALDCVQEDKDVRPTMSQVVERLLRDEQNY