Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048603.t1 | XP_003590850.2 | 61.6 | 479 | 105 | 5 | 1 | 409 | 43 | 512 | 5.00E-151 | 544.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048603.t1 | Q9LUZ4 | 40.8 | 485 | 194 | 12 | 6 | 403 | 30 | 508 | 2.1e-81 | 304.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048603.t1 | G7I4W5 | 61.6 | 479 | 105 | 5 | 1 | 409 | 43 | 512 | 3.6e-151 | 544.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048603.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048603.t1 | MTR_1g075890 | 65.553 | 479 | 86 | 4 | 1 | 409 | 43 | 512 | 0.0 | 565 |
| MS.gene048603.t1 | MTR_3g464280 | 58.796 | 432 | 125 | 8 | 6 | 410 | 32 | 437 | 2.67e-149 | 433 |
| MS.gene048603.t1 | MTR_3g464260 | 55.054 | 465 | 78 | 8 | 1 | 409 | 35 | 424 | 5.60e-148 | 431 |
| MS.gene048603.t1 | MTR_5g071070 | 44.052 | 538 | 161 | 13 | 1 | 401 | 45 | 579 | 2.48e-125 | 379 |
| MS.gene048603.t1 | MTR_5g071070 | 43.000 | 500 | 145 | 13 | 39 | 401 | 1 | 497 | 7.52e-109 | 333 |
| MS.gene048603.t1 | MTR_5g082830 | 40.535 | 523 | 185 | 14 | 2 | 401 | 41 | 560 | 5.03e-107 | 331 |
| MS.gene048603.t1 | MTR_3g464290 | 56.269 | 327 | 107 | 9 | 107 | 409 | 56 | 370 | 1.34e-93 | 290 |
| MS.gene048603.t1 | MTR_3g070880 | 39.130 | 460 | 154 | 14 | 2 | 401 | 21 | 414 | 2.06e-90 | 283 |
| MS.gene048603.t1 | MTR_7g092070 | 38.462 | 468 | 166 | 12 | 2 | 355 | 58 | 517 | 4.84e-90 | 288 |
| MS.gene048603.t1 | MTR_3g464270 | 48.355 | 304 | 105 | 5 | 150 | 410 | 8 | 302 | 1.32e-80 | 252 |
| MS.gene048603.t1 | MTR_1g050438 | 31.317 | 463 | 191 | 12 | 2 | 354 | 26 | 471 | 1.20e-57 | 199 |
| MS.gene048603.t1 | MTR_0728s0020 | 31.317 | 463 | 191 | 12 | 2 | 354 | 42 | 487 | 2.15e-57 | 199 |
| MS.gene048603.t1 | MTR_3g029590 | 41.219 | 279 | 95 | 9 | 129 | 348 | 242 | 510 | 2.35e-57 | 200 |
| MS.gene048603.t1 | MTR_3g029590 | 47.619 | 84 | 44 | 0 | 14 | 97 | 68 | 151 | 5.43e-17 | 83.6 |
| MS.gene048603.t1 | MTR_3g435590 | 35.000 | 340 | 132 | 7 | 16 | 271 | 57 | 391 | 1.65e-52 | 182 |
| MS.gene048603.t1 | MTR_3g435680 | 47.260 | 146 | 41 | 2 | 129 | 240 | 131 | 274 | 9.90e-40 | 146 |
| MS.gene048603.t1 | MTR_8g102100 | 39.394 | 165 | 60 | 2 | 147 | 271 | 77 | 241 | 1.11e-29 | 119 |
| MS.gene048603.t1 | MTR_6g090380 | 65.217 | 69 | 24 | 0 | 147 | 215 | 99 | 167 | 2.30e-29 | 118 |
| MS.gene048603.t1 | MTR_3g103960 | 61.972 | 71 | 26 | 1 | 146 | 215 | 48 | 118 | 1.20e-27 | 111 |
| MS.gene048603.t1 | MTR_2g090605 | 58.462 | 65 | 27 | 0 | 151 | 215 | 77 | 141 | 4.70e-25 | 106 |
| MS.gene048603.t1 | MTR_4g078660 | 53.623 | 69 | 32 | 0 | 147 | 215 | 56 | 124 | 2.87e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048603.t1 | AT5G58620 | 43.238 | 488 | 174 | 15 | 6 | 401 | 30 | 506 | 1.04e-105 | 325 |
| MS.gene048603.t1 | AT2G40140 | 45.070 | 426 | 154 | 12 | 5 | 373 | 48 | 450 | 2.34e-101 | 313 |
| MS.gene048603.t1 | AT2G40140 | 45.070 | 426 | 154 | 12 | 5 | 373 | 48 | 450 | 2.34e-101 | 313 |
| MS.gene048603.t1 | AT3G55980 | 42.396 | 434 | 155 | 15 | 2 | 373 | 41 | 441 | 2.67e-90 | 285 |
| MS.gene048603.t1 | AT3G55980 | 42.396 | 434 | 155 | 15 | 2 | 373 | 108 | 508 | 1.70e-89 | 284 |
| MS.gene048603.t1 | AT2G41900 | 38.565 | 446 | 162 | 11 | 7 | 354 | 64 | 495 | 8.85e-86 | 276 |
| MS.gene048603.t1 | AT5G12850 | 44.928 | 276 | 96 | 9 | 129 | 355 | 235 | 503 | 5.15e-65 | 221 |
| MS.gene048603.t1 | AT5G12850 | 46.835 | 79 | 42 | 0 | 14 | 92 | 64 | 142 | 1.42e-16 | 82.4 |
| MS.gene048603.t1 | AT5G07500 | 56.627 | 83 | 36 | 0 | 133 | 215 | 34 | 116 | 2.24e-30 | 117 |
| MS.gene048603.t1 | AT4G29190 | 56.667 | 90 | 30 | 1 | 126 | 215 | 63 | 143 | 1.05e-29 | 118 |
| MS.gene048603.t1 | AT2G25900 | 60.870 | 69 | 27 | 0 | 147 | 215 | 86 | 154 | 1.22e-28 | 114 |
| MS.gene048603.t1 | AT2G25900 | 60.870 | 69 | 27 | 0 | 147 | 215 | 86 | 154 | 1.22e-28 | 114 |
| MS.gene048603.t1 | AT2G19810 | 52.222 | 90 | 34 | 1 | 126 | 215 | 62 | 142 | 3.02e-28 | 114 |
| MS.gene048603.t1 | AT5G44260 | 52.273 | 88 | 37 | 2 | 129 | 215 | 42 | 125 | 1.12e-24 | 105 |
| MS.gene048603.t1 | AT1G03790 | 46.465 | 99 | 48 | 2 | 118 | 215 | 53 | 147 | 1.58e-24 | 104 |
Find 113 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCTGTTTC+TGG | 0.098846 | 3.1:+48209073 | MS.gene048603:CDS |
| CTTATGGTTTCTGCCTTATT+TGG | 0.186884 | 3.1:+48208971 | MS.gene048603:CDS |
| TTCACAGATGTTGTTGAAAA+AGG | 0.211504 | 3.1:+48208866 | MS.gene048603:CDS |
| GGTGTCCTGTCTTATATTAT+TGG | 0.263939 | 3.1:+48209001 | MS.gene048603:CDS |
| TCCCTTCCTGAGATAAATAA+TGG | 0.281745 | 3.1:+48209347 | MS.gene048603:CDS |
| GACACCCTTGCTTCCAAATA+AGG | 0.305473 | 3.1:-48208984 | None:intergenic |
| GTGTCCCTTGCCCCGACTTT+CGG | 0.317518 | 3.1:+48209516 | MS.gene048603:CDS |
| CAAGGGCTTATTCTCATGAT+TGG | 0.318225 | 3.1:+48209423 | MS.gene048603:CDS |
| TATATAGTACAAATGAATTT+AGG | 0.321742 | 3.1:+48209372 | MS.gene048603:CDS |
| TCTCCTTCAAATAGGCTTGC+AGG | 0.328651 | 3.1:+48210028 | MS.gene048603:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.347611 | 3.1:+48208955 | MS.gene048603:CDS |
| GTCTTTCATCTCCTTCAAAT+AGG | 0.348830 | 3.1:+48210020 | MS.gene048603:CDS |
| GAGGGTTGGATCGAAGGAAA+TGG | 0.360734 | 3.1:+48208928 | MS.gene048603:CDS |
| CTTGTAGCAGCTCCACCATT+TGG | 0.370368 | 3.1:-48209277 | None:intergenic |
| CTTACCAATTCAAATGTCAT+TGG | 0.371079 | 3.1:+48210160 | MS.gene048603:CDS |
| TTTCTTGGCATCTGAAGAGC+TGG | 0.379566 | 3.1:-48209902 | None:intergenic |
| CATGATCCCTTCCGAAAGTC+GGG | 0.387890 | 3.1:-48209527 | None:intergenic |
| CTGTCTTATATTATTGGAAC+CGG | 0.409250 | 3.1:+48209007 | MS.gene048603:CDS |
| TGACACTGACAATATTCTTA+AGG | 0.414329 | 3.1:+48209244 | MS.gene048603:CDS |
| AAGGATAGCCCCAGAGTTGA+TGG | 0.415284 | 3.1:-48210132 | None:intergenic |
| AGGGTTGGATCGAAGGAAAT+GGG | 0.426387 | 3.1:+48208929 | MS.gene048603:CDS |
| TTCTGCCTTATTTGGAAGCA+AGG | 0.427911 | 3.1:+48208979 | MS.gene048603:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 3.1:+48209405 | MS.gene048603:CDS |
| GACAATATTCTTAAGGAAGC+AGG | 0.436071 | 3.1:+48209251 | MS.gene048603:CDS |
| TTGTGCTACCTCACTTGCTA+TGG | 0.437333 | 3.1:+48210265 | MS.gene048603:CDS |
| TATATCCCATTATTTATCTC+AGG | 0.446350 | 3.1:-48209353 | None:intergenic |
| CCCTTCCTGAGATAAATAAT+GGG | 0.448156 | 3.1:+48209348 | MS.gene048603:CDS |
| CCGTCATTAACTTCCGCATA+AGG | 0.448177 | 3.1:-48209985 | None:intergenic |
| GAGTGTCCCTTTGTTCATCC+AGG | 0.455762 | 3.1:+48209449 | MS.gene048603:CDS |
| TGATCCAATGACATTTGAAT+TGG | 0.455978 | 3.1:-48210164 | None:intergenic |
| ACTCCTGCAAGCCTATTTGA+AGG | 0.456472 | 3.1:-48210031 | None:intergenic |
| TTCACCTAGTTCTTCTTCAT+CGG | 0.461261 | 3.1:+48209748 | MS.gene048603:CDS |
| TTGCTTGATGCATCTACAAA+TGG | 0.463232 | 3.1:+48209130 | MS.gene048603:CDS |
| TTAAGGTATGGAAGGAGGGT+TGG | 0.464678 | 3.1:+48208914 | MS.gene048603:CDS |
| CAGGTATAATGATATTTCCT+TGG | 0.467024 | 3.1:-48209494 | None:intergenic |
| TGGAAGGAGGGTTGGATCGA+AGG | 0.473211 | 3.1:+48208922 | MS.gene048603:CDS |
| CCGAGTATGCGGCTCAGATA+AGG | 0.487863 | 3.1:+48209045 | MS.gene048603:CDS |
| CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 3.1:+48209692 | MS.gene048603:CDS |
| AGAACACGAACCATCAACTC+TGG | 0.495455 | 3.1:+48210122 | MS.gene048603:CDS |
| CCCTTGCCCCGACTTTCGGA+AGG | 0.498336 | 3.1:+48209520 | MS.gene048603:CDS |
| CCCTTCCGAAAGTCGGGGCA+AGG | 0.501706 | 3.1:-48209521 | None:intergenic |
| AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | 3.1:-48209711 | None:intergenic |
| TTCTTGGCATCTGAAGAGCT+GGG | 0.503638 | 3.1:-48209901 | None:intergenic |
| GCATGATCCCTTCCGAAAGT+CGG | 0.505621 | 3.1:-48209528 | None:intergenic |
| ATGTTGATGAGGTAGGGTTA+AGG | 0.507383 | 3.1:+48208897 | MS.gene048603:CDS |
| AGGGTTAAGGTATGGAAGGA+GGG | 0.508084 | 3.1:+48208910 | MS.gene048603:CDS |
| CCTTATCTGAGCCGCATACT+CGG | 0.510920 | 3.1:-48209045 | None:intergenic |
| TAGGGTTAAGGTATGGAAGG+AGG | 0.513386 | 3.1:+48208909 | MS.gene048603:CDS |
| GCAGCATCATTGCCTACGGC+TGG | 0.514430 | 3.1:+48209839 | MS.gene048603:CDS |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 3.1:+48209406 | MS.gene048603:CDS |
| CTTGATAACCTCAGCAGAAG+TGG | 0.528251 | 3.1:-48209104 | None:intergenic |
| TTTGAATTGGTAAGATCAGA+AGG | 0.528268 | 3.1:-48210151 | None:intergenic |
| TCAGGAAGGGATCGATCAAT+CGG | 0.528745 | 3.1:-48209335 | None:intergenic |
| GAACACGAACCATCAACTCT+GGG | 0.533588 | 3.1:+48210123 | MS.gene048603:CDS |
| AATAAGGCAGAAACCATAAG+AGG | 0.534423 | 3.1:-48208968 | None:intergenic |
| AAAGTCGGGGCAAGGGACAC+AGG | 0.535861 | 3.1:-48209513 | None:intergenic |
| TAAGGAAGCAGGTTTCCAAA+TGG | 0.540705 | 3.1:+48209262 | MS.gene048603:CDS |
| TCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | 3.1:+48208980 | MS.gene048603:CDS |
| CCCATTATTTATCTCAGGAA+GGG | 0.543475 | 3.1:-48209348 | None:intergenic |
| ATGCAAAGCGCCGTGATCCA+AGG | 0.543626 | 3.1:+48209477 | MS.gene048603:CDS |
| GATGAGGTAGGGTTAAGGTA+TGG | 0.544700 | 3.1:+48208902 | MS.gene048603:CDS |
| AACATGATGTTGATGAGGTA+GGG | 0.544918 | 3.1:+48208891 | MS.gene048603:CDS |
| GCAGATGGAGTCAAAGGTGG+CGG | 0.558024 | 3.1:-48209818 | None:intergenic |
| TCCCATTATTTATCTCAGGA+AGG | 0.558706 | 3.1:-48209349 | None:intergenic |
| GGTGAATTCGAATATGATGT+AGG | 0.560129 | 3.1:-48209731 | None:intergenic |
| GGAAGCAGGTTTCCAAATGG+TGG | 0.560340 | 3.1:+48209265 | MS.gene048603:CDS |
| GGACTTAAAGCTTGCCACGC+TGG | 0.562068 | 3.1:-48210242 | None:intergenic |
| AATGATATTTCCTTGGATCA+CGG | 0.568390 | 3.1:-48209487 | None:intergenic |
| GTGGAGCTGCTACAAGATGC+AGG | 0.572446 | 3.1:+48209284 | MS.gene048603:CDS |
| GAACATGATGTTGATGAGGT+AGG | 0.574038 | 3.1:+48208890 | MS.gene048603:CDS |
| TTCGAATATGATGTAGGTGA+AGG | 0.575873 | 3.1:-48209725 | None:intergenic |
| CGGAAGGGATCATGCAGCAA+AGG | 0.575933 | 3.1:+48209536 | MS.gene048603:CDS |
| AGTGTCCCTTTGTTCATCCA+GGG | 0.576667 | 3.1:+48209450 | MS.gene048603:CDS |
| TTGTTCTGCCACTTCTGCTG+AGG | 0.578024 | 3.1:+48209096 | MS.gene048603:CDS |
| CCTTGCCCCGACTTTCGGAA+GGG | 0.578605 | 3.1:+48209521 | MS.gene048603:CDS |
| ATCTGCAGCATCATTGCCTA+CGG | 0.579402 | 3.1:+48209835 | MS.gene048603:CDS |
| GCTCTCGCTCCGCTTTGTGA+TGG | 0.581388 | 3.1:-48210206 | None:intergenic |
| GTAGGCAATGATGCTGCAGA+TGG | 0.582817 | 3.1:-48209833 | None:intergenic |
| AGAAGAATCCATAGCAAGTG+AGG | 0.583861 | 3.1:-48210273 | None:intergenic |
| AGGTAGGGTTAAGGTATGGA+AGG | 0.584899 | 3.1:+48208906 | MS.gene048603:CDS |
| TAATCTTTCTTCTCAATGTG+AGG | 0.587801 | 3.1:-48209311 | None:intergenic |
| CGGTTCCAATAATATAAGAC+AGG | 0.589189 | 3.1:-48209006 | None:intergenic |
| GGCCACATGGTTCCAGCCGT+AGG | 0.590587 | 3.1:-48209851 | None:intergenic |
| TCGGTTAACATCTACACGAC+CGG | 0.594422 | 3.1:-48209026 | None:intergenic |
| CTTATGCGGAAGTTAATGAC+GGG | 0.596514 | 3.1:+48209986 | MS.gene048603:CDS |
| CCGAGTCTGAGTCGGCCACA+TGG | 0.598478 | 3.1:-48209864 | None:intergenic |
| CCTTCCGAAAGTCGGGGCAA+GGG | 0.599933 | 3.1:-48209520 | None:intergenic |
| CCTTATGCGGAAGTTAATGA+CGG | 0.602861 | 3.1:+48209985 | MS.gene048603:CDS |
| GCGGAAGTTAATGACGGGAG+AGG | 0.608895 | 3.1:+48209991 | MS.gene048603:CDS |
| GTGTTCTGATGCGACTGCAT+TGG | 0.609359 | 3.1:-48210106 | None:intergenic |
| TAATCCGATGAAGAAGAACT+AGG | 0.616056 | 3.1:-48209752 | None:intergenic |
| AGGCGAACATGATGTTGATG+AGG | 0.616849 | 3.1:+48208886 | MS.gene048603:CDS |
| TGGATGAACAAAGGGACACT+CGG | 0.617153 | 3.1:-48209447 | None:intergenic |
| CCATGTGGCCGACTCAGACT+CGG | 0.618450 | 3.1:+48209864 | MS.gene048603:CDS |
| TGATGCGACTGCATTGGTGT+CGG | 0.622152 | 3.1:-48210100 | None:intergenic |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 3.1:-48209416 | None:intergenic |
| GCAGATTGTGTCAAATAAGA+CGG | 0.628556 | 3.1:-48209791 | None:intergenic |
| AACATGAAAATCTCCTTATG+CGG | 0.633353 | 3.1:+48209972 | MS.gene048603:CDS |
| GTGTCCCTTTGTTCATCCAG+GGG | 0.633464 | 3.1:+48209451 | MS.gene048603:CDS |
| GATGCTGCAGATGGAGTCAA+AGG | 0.643097 | 3.1:-48209824 | None:intergenic |
| GTATGAAGCCGAGTCTGAGT+CGG | 0.648321 | 3.1:-48209872 | None:intergenic |
| AGGAAATGGGATATGAAGAG+AGG | 0.649200 | 3.1:+48208942 | MS.gene048603:CDS |
| GTAGATGTTAACCGAGTATG+CGG | 0.658936 | 3.1:+48209034 | MS.gene048603:CDS |
| CTTTATTGAGCGCACCAGCG+TGG | 0.660917 | 3.1:+48210228 | MS.gene048603:CDS |
| ATGATCCCTTCCGAAAGTCG+GGG | 0.672164 | 3.1:-48209526 | None:intergenic |
| TGCCTACGGCTGGAACCATG+TGG | 0.681407 | 3.1:+48209849 | MS.gene048603:CDS |
| GCTGCAGATGGAGTCAAAGG+TGG | 0.696337 | 3.1:-48209821 | None:intergenic |
| ATGGCATCAACTCTTAATTG+TGG | 0.699766 | 3.1:-48210187 | None:intergenic |
| GATGCTTGTAAATATGCACA+TGG | 0.719936 | 3.1:+48209560 | MS.gene048603:CDS |
| ATAGCAAGTGAGGTAGCACA+AGG | 0.724605 | 3.1:-48210263 | None:intergenic |
| GAGTTGATGCCATCACAAAG+CGG | 0.725373 | 3.1:+48210197 | MS.gene048603:CDS |
| AACACGAACCATCAACTCTG+GGG | 0.733137 | 3.1:+48210124 | MS.gene048603:CDS |
| GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 3.1:-48209695 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTACAAATGAATTT+AGG | + | chr3.1:48209372-48209391 | MS.gene048603:CDS | 15.0% |
| ! | TATATCCCATTATTTATCTC+AGG | - | chr3.1:48209356-48209375 | None:intergenic | 25.0% |
| !!! | CACATGGTATTTTTTAATGT+TGG | + | chr3.1:48209576-48209595 | MS.gene048603:intron | 25.0% |
| AACATAAAAGTCATCTTCAC+TGG | - | chr3.1:48209222-48209241 | None:intergenic | 30.0% | |
| AACATGAAAATCTCCTTATG+CGG | + | chr3.1:48209972-48209991 | MS.gene048603:CDS | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3.1:48209490-48209509 | None:intergenic | 30.0% | |
| CAGGTATAATGATATTTCCT+TGG | - | chr3.1:48209497-48209516 | None:intergenic | 30.0% | |
| CTGTCTTATATTATTGGAAC+CGG | + | chr3.1:48209007-48209026 | MS.gene048603:CDS | 30.0% | |
| CTTACCAATTCAAATGTCAT+TGG | + | chr3.1:48210160-48210179 | MS.gene048603:CDS | 30.0% | |
| TAATCTTTCTTCTCAATGTG+AGG | - | chr3.1:48209314-48209333 | None:intergenic | 30.0% | |
| TGACACTGACAATATTCTTA+AGG | + | chr3.1:48209244-48209263 | MS.gene048603:CDS | 30.0% | |
| TGATCCAATGACATTTGAAT+TGG | - | chr3.1:48210167-48210186 | None:intergenic | 30.0% | |
| TTCACAGATGTTGTTGAAAA+AGG | + | chr3.1:48208866-48208885 | MS.gene048603:CDS | 30.0% | |
| TTTGAATTGGTAAGATCAGA+AGG | - | chr3.1:48210154-48210173 | None:intergenic | 30.0% | |
| ! | CTAACCTTGAAAACATTTTC+GGG | + | chr3.1:48210062-48210081 | MS.gene048603:CDS | 30.0% |
| ! | GCTAACCTTGAAAACATTTT+CGG | + | chr3.1:48210061-48210080 | MS.gene048603:CDS | 30.0% |
| ! | TCGGTGTCTAATAATATCTT+CGG | + | chr3.1:48209191-48209210 | MS.gene048603:intron | 30.0% |
| !! | AAAATGTTTTCAAGGTTAGC+GGG | - | chr3.1:48210061-48210080 | None:intergenic | 30.0% |
| !! | GAAAATGTTTTCAAGGTTAG+CGG | - | chr3.1:48210062-48210081 | None:intergenic | 30.0% |
| AATAAGGCAGAAACCATAAG+AGG | - | chr3.1:48208971-48208990 | None:intergenic | 35.0% | |
| ATGGCATCAACTCTTAATTG+TGG | - | chr3.1:48210190-48210209 | None:intergenic | 35.0% | |
| CCCATTATTTATCTCAGGAA+GGG | - | chr3.1:48209351-48209370 | None:intergenic | 35.0% | |
| CCCTTCCTGAGATAAATAAT+GGG | + | chr3.1:48209348-48209367 | MS.gene048603:CDS | 35.0% | |
| CGGTTCCAATAATATAAGAC+AGG | - | chr3.1:48209009-48209028 | None:intergenic | 35.0% | |
| GACAATATTCTTAAGGAAGC+AGG | + | chr3.1:48209251-48209270 | MS.gene048603:CDS | 35.0% | |
| GATGCTTGTAAATATGCACA+TGG | + | chr3.1:48209560-48209579 | MS.gene048603:CDS | 35.0% | |
| GCAGATTGTGTCAAATAAGA+CGG | - | chr3.1:48209794-48209813 | None:intergenic | 35.0% | |
| GGTGAATTCGAATATGATGT+AGG | - | chr3.1:48209734-48209753 | None:intergenic | 35.0% | |
| GGTGTCCTGTCTTATATTAT+TGG | + | chr3.1:48209001-48209020 | MS.gene048603:CDS | 35.0% | |
| GTCTTTCATCTCCTTCAAAT+AGG | + | chr3.1:48210020-48210039 | MS.gene048603:CDS | 35.0% | |
| TAATCCGATGAAGAAGAACT+AGG | - | chr3.1:48209755-48209774 | None:intergenic | 35.0% | |
| TCCCATTATTTATCTCAGGA+AGG | - | chr3.1:48209352-48209371 | None:intergenic | 35.0% | |
| TCCCTTCCTGAGATAAATAA+TGG | + | chr3.1:48209347-48209366 | MS.gene048603:CDS | 35.0% | |
| TTCGAATATGATGTAGGTGA+AGG | - | chr3.1:48209728-48209747 | None:intergenic | 35.0% | |
| TTGCTTGATGCATCTACAAA+TGG | + | chr3.1:48209130-48209149 | MS.gene048603:CDS | 35.0% | |
| ! | AACATGATGTTGATGAGGTA+GGG | + | chr3.1:48208891-48208910 | MS.gene048603:CDS | 35.0% |
| ! | ATGACCCGAAAATGTTTTCA+AGG | - | chr3.1:48210069-48210088 | None:intergenic | 35.0% |
| ! | CTTATGGTTTCTGCCTTATT+TGG | + | chr3.1:48208971-48208990 | MS.gene048603:CDS | 35.0% |
| ! | TTCACCTAGTTCTTCTTCAT+CGG | + | chr3.1:48209748-48209767 | MS.gene048603:CDS | 35.0% |
| !! | GCAGTTTTCAATCTGTTTCT+TGG | - | chr3.1:48209920-48209939 | None:intergenic | 35.0% |
| AGAAGAATCCATAGCAAGTG+AGG | - | chr3.1:48210276-48210295 | None:intergenic | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3.1:48208942-48208961 | MS.gene048603:CDS | 40.0% | |
| ATACAGAACAAGGCTTTGCA+CGG | + | chr3.1:48209613-48209632 | MS.gene048603:intron | 40.0% | |
| ATCCTGCTCAATACAGAACA+AGG | + | chr3.1:48209603-48209622 | MS.gene048603:intron | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3.1:48209423-48209442 | MS.gene048603:CDS | 40.0% | |
| CCTTATGCGGAAGTTAATGA+CGG | + | chr3.1:48209985-48210004 | MS.gene048603:CDS | 40.0% | |
| CTTATGCGGAAGTTAATGAC+GGG | + | chr3.1:48209986-48210005 | MS.gene048603:CDS | 40.0% | |
| GTAGATGTTAACCGAGTATG+CGG | + | chr3.1:48209034-48209053 | MS.gene048603:CDS | 40.0% | |
| TAAGGAAGCAGGTTTCCAAA+TGG | + | chr3.1:48209262-48209281 | MS.gene048603:CDS | 40.0% | |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3.1:48209419-48209438 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGTAGGGTTA+AGG | + | chr3.1:48208897-48208916 | MS.gene048603:CDS | 40.0% |
| ! | ATTTTCCCCTGGATGAACAA+AGG | - | chr3.1:48209459-48209478 | None:intergenic | 40.0% |
| ! | GAACATGATGTTGATGAGGT+AGG | + | chr3.1:48208890-48208909 | MS.gene048603:CDS | 40.0% |
| ! | TTTTCCCCTGGATGAACAAA+GGG | - | chr3.1:48209458-48209477 | None:intergenic | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3.1:48209406-48209425 | MS.gene048603:CDS | 40.0% |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3.1:48209405-48209424 | MS.gene048603:CDS | 40.0% |
| !! | TCTGCCTTATTTGGAAGCAA+GGG | + | chr3.1:48208980-48208999 | MS.gene048603:CDS | 40.0% |
| !! | TTCTGCCTTATTTGGAAGCA+AGG | + | chr3.1:48208979-48208998 | MS.gene048603:CDS | 40.0% |
| AACACGAACCATCAACTCTG+GGG | + | chr3.1:48210124-48210143 | MS.gene048603:CDS | 45.0% | |
| ACTCCTGCAAGCCTATTTGA+AGG | - | chr3.1:48210034-48210053 | None:intergenic | 45.0% | |
| AGAACACGAACCATCAACTC+TGG | + | chr3.1:48210122-48210141 | MS.gene048603:CDS | 45.0% | |
| AGACACCGAGACAATCAAAC+CGG | - | chr3.1:48209180-48209199 | None:intergenic | 45.0% | |
| AGGCGAACATGATGTTGATG+AGG | + | chr3.1:48208886-48208905 | MS.gene048603:CDS | 45.0% | |
| AGGGTTAAGGTATGGAAGGA+GGG | + | chr3.1:48208910-48208929 | MS.gene048603:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3.1:48208929-48208948 | MS.gene048603:CDS | 45.0% | |
| AGGTAGGGTTAAGGTATGGA+AGG | + | chr3.1:48208906-48208925 | MS.gene048603:CDS | 45.0% | |
| AGTGTCCCTTTGTTCATCCA+GGG | + | chr3.1:48209450-48209469 | MS.gene048603:CDS | 45.0% | |
| ATAGCAAGTGAGGTAGCACA+AGG | - | chr3.1:48210266-48210285 | None:intergenic | 45.0% | |
| ATCTGCAGCATCATTGCCTA+CGG | + | chr3.1:48209835-48209854 | MS.gene048603:CDS | 45.0% | |
| CCGTCATTAACTTCCGCATA+AGG | - | chr3.1:48209988-48210007 | None:intergenic | 45.0% | |
| GAACACGAACCATCAACTCT+GGG | + | chr3.1:48210123-48210142 | MS.gene048603:CDS | 45.0% | |
| GACACCCTTGCTTCCAAATA+AGG | - | chr3.1:48208987-48209006 | None:intergenic | 45.0% | |
| GATGAGGTAGGGTTAAGGTA+TGG | + | chr3.1:48208902-48208921 | MS.gene048603:CDS | 45.0% | |
| TAGGGTTAAGGTATGGAAGG+AGG | + | chr3.1:48208909-48208928 | MS.gene048603:CDS | 45.0% | |
| TCAGGAAGGGATCGATCAAT+CGG | - | chr3.1:48209338-48209357 | None:intergenic | 45.0% | |
| TCGGTTAACATCTACACGAC+CGG | - | chr3.1:48209029-48209048 | None:intergenic | 45.0% | |
| TCTCCTTCAAATAGGCTTGC+AGG | + | chr3.1:48210028-48210047 | MS.gene048603:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3.1:48208955-48208974 | MS.gene048603:CDS | 45.0% | |
| TGGATGAACAAAGGGACACT+CGG | - | chr3.1:48209450-48209469 | None:intergenic | 45.0% | |
| TTAAGGTATGGAAGGAGGGT+TGG | + | chr3.1:48208914-48208933 | MS.gene048603:CDS | 45.0% | |
| TTCTTGGCATCTGAAGAGCT+GGG | - | chr3.1:48209904-48209923 | None:intergenic | 45.0% | |
| TTTCTTGGCATCTGAAGAGC+TGG | - | chr3.1:48209905-48209924 | None:intergenic | 45.0% | |
| ! | CTTGATAACCTCAGCAGAAG+TGG | - | chr3.1:48209107-48209126 | None:intergenic | 45.0% |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | chr3.1:48209698-48209717 | None:intergenic | 45.0% |
| ! | GGTAGTTCTGTTGTTGCGAA+TGG | + | chr3.1:48209151-48209170 | MS.gene048603:intron | 45.0% |
| ! | TTGTGCTACCTCACTTGCTA+TGG | + | chr3.1:48210265-48210284 | MS.gene048603:CDS | 45.0% |
| !! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr3.1:48209608-48209627 | None:intergenic | 45.0% |
| !! | GAGTTGATGCCATCACAAAG+CGG | + | chr3.1:48210197-48210216 | MS.gene048603:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | chr3.1:48209073-48209092 | MS.gene048603:CDS | 45.0% |
| AAGGATAGCCCCAGAGTTGA+TGG | - | chr3.1:48210135-48210154 | None:intergenic | 50.0% | |
| AGAACAAGGCTTTGCACGGA+TGG | + | chr3.1:48209617-48209636 | MS.gene048603:intron | 50.0% | |
| AGGCTTTGCACGGATGGAAT+CGG | + | chr3.1:48209623-48209642 | MS.gene048603:intron | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | chr3.1:48209714-48209733 | None:intergenic | 50.0% | |
| ATGATCCCTTCCGAAAGTCG+GGG | - | chr3.1:48209529-48209548 | None:intergenic | 50.0% | |
| CATGATCCCTTCCGAAAGTC+GGG | - | chr3.1:48209530-48209549 | None:intergenic | 50.0% | |
| CCTTATCTGAGCCGCATACT+CGG | - | chr3.1:48209048-48209067 | None:intergenic | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | chr3.1:48209692-48209711 | MS.gene048603:CDS | 50.0% | |
| CTGTTGTTGCGAATGGCAAC+CGG | + | chr3.1:48209158-48209177 | MS.gene048603:intron | 50.0% | |
| CTTGTAGCAGCTCCACCATT+TGG | - | chr3.1:48209280-48209299 | None:intergenic | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3.1:48208928-48208947 | MS.gene048603:CDS | 50.0% | |
| GAGTGTCCCTTTGTTCATCC+AGG | + | chr3.1:48209449-48209468 | MS.gene048603:CDS | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | chr3.1:48209827-48209846 | None:intergenic | 50.0% | |
| GCATGATCCCTTCCGAAAGT+CGG | - | chr3.1:48209531-48209550 | None:intergenic | 50.0% | |
| GGAAGCAGGTTTCCAAATGG+TGG | + | chr3.1:48209265-48209284 | MS.gene048603:CDS | 50.0% | |
| GTAGGCAATGATGCTGCAGA+TGG | - | chr3.1:48209836-48209855 | None:intergenic | 50.0% | |
| GTATGAAGCCGAGTCTGAGT+CGG | - | chr3.1:48209875-48209894 | None:intergenic | 50.0% | |
| GTGTCCCTTTGTTCATCCAG+GGG | + | chr3.1:48209451-48209470 | MS.gene048603:CDS | 50.0% | |
| GTGTTCTGATGCGACTGCAT+TGG | - | chr3.1:48210109-48210128 | None:intergenic | 50.0% | |
| TACAACGGTCGAAGCTCATC+TGG | - | chr3.1:48209683-48209702 | None:intergenic | 50.0% | |
| ! | TGATGCGACTGCATTGGTGT+CGG | - | chr3.1:48210103-48210122 | None:intergenic | 50.0% |
| ! | TTGTTCTGCCACTTCTGCTG+AGG | + | chr3.1:48209096-48209115 | MS.gene048603:CDS | 50.0% |
| !! | GGCAACCGGTTTGATTGTCT+CGG | + | chr3.1:48209172-48209191 | MS.gene048603:intron | 50.0% |
| ATGGAATCGGGCGTACAAGG+AGG | + | chr3.1:48209636-48209655 | MS.gene048603:intron | 55.0% | |
| CCGAGTATGCGGCTCAGATA+AGG | + | chr3.1:48209045-48209064 | MS.gene048603:CDS | 55.0% | |
| CGGAAGGGATCATGCAGCAA+AGG | + | chr3.1:48209536-48209555 | MS.gene048603:CDS | 55.0% | |
| CTTTATTGAGCGCACCAGCG+TGG | + | chr3.1:48210228-48210247 | MS.gene048603:CDS | 55.0% | |
| GCAGATGGAGTCAAAGGTGG+CGG | - | chr3.1:48209821-48209840 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | chr3.1:48209824-48209843 | None:intergenic | 55.0% | |
| GGACTTAAAGCTTGCCACGC+TGG | - | chr3.1:48210245-48210264 | None:intergenic | 55.0% | |
| GGCTTTGCACGGATGGAATC+GGG | + | chr3.1:48209624-48209643 | MS.gene048603:intron | 55.0% | |
| GTGGAGCTGCTACAAGATGC+AGG | + | chr3.1:48209284-48209303 | MS.gene048603:CDS | 55.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3.1:48208922-48208941 | MS.gene048603:CDS | 55.0% | |
| TGGAATCGGGCGTACAAGGA+GGG | + | chr3.1:48209637-48209656 | MS.gene048603:intron | 55.0% | |
| ! | GCGGAAGTTAATGACGGGAG+AGG | + | chr3.1:48209991-48210010 | MS.gene048603:CDS | 55.0% |
| !! | ATGCAAAGCGCCGTGATCCA+AGG | + | chr3.1:48209477-48209496 | MS.gene048603:CDS | 55.0% |
| AAAGTCGGGGCAAGGGACAC+AGG | - | chr3.1:48209516-48209535 | None:intergenic | 60.0% | |
| CCTTCCGAAAGTCGGGGCAA+GGG | - | chr3.1:48209523-48209542 | None:intergenic | 60.0% | |
| CCTTGCCCCGACTTTCGGAA+GGG | + | chr3.1:48209521-48209540 | MS.gene048603:CDS | 60.0% | |
| CGGATGGAATCGGGCGTACA+AGG | + | chr3.1:48209633-48209652 | MS.gene048603:intron | 60.0% | |
| GCAGCATCATTGCCTACGGC+TGG | + | chr3.1:48209839-48209858 | MS.gene048603:CDS | 60.0% | |
| GCTCTCGCTCCGCTTTGTGA+TGG | - | chr3.1:48210209-48210228 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGACTTT+CGG | + | chr3.1:48209516-48209535 | MS.gene048603:CDS | 60.0% | |
| TGCCTACGGCTGGAACCATG+TGG | + | chr3.1:48209849-48209868 | MS.gene048603:CDS | 60.0% | |
| ! | CCATGTGGCCGACTCAGACT+CGG | + | chr3.1:48209864-48209883 | MS.gene048603:CDS | 60.0% |
| ! | CGGCGCTTTGCATTTTCCCC+TGG | - | chr3.1:48209470-48209489 | None:intergenic | 60.0% |
| CCCTTCCGAAAGTCGGGGCA+AGG | - | chr3.1:48209524-48209543 | None:intergenic | 65.0% | |
| CCCTTGCCCCGACTTTCGGA+AGG | + | chr3.1:48209520-48209539 | MS.gene048603:CDS | 65.0% | |
| CCGAGTCTGAGTCGGCCACA+TGG | - | chr3.1:48209867-48209886 | None:intergenic | 65.0% | |
| GGCCACATGGTTCCAGCCGT+AGG | - | chr3.1:48209854-48209873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 48208860 | 48210297 | 48208860 | ID=MS.gene048603 |
| chr3.1 | mRNA | 48208860 | 48210297 | 48208860 | ID=MS.gene048603.t1;Parent=MS.gene048603 |
| chr3.1 | exon | 48208860 | 48209151 | 48208860 | ID=MS.gene048603.t1.exon1;Parent=MS.gene048603.t1 |
| chr3.1 | CDS | 48208860 | 48209151 | 48208860 | ID=cds.MS.gene048603.t1;Parent=MS.gene048603.t1 |
| chr3.1 | exon | 48209228 | 48209581 | 48209228 | ID=MS.gene048603.t1.exon2;Parent=MS.gene048603.t1 |
| chr3.1 | CDS | 48209228 | 48209581 | 48209228 | ID=cds.MS.gene048603.t1;Parent=MS.gene048603.t1 |
| chr3.1 | exon | 48209684 | 48210297 | 48209684 | ID=MS.gene048603.t1.exon3;Parent=MS.gene048603.t1 |
| chr3.1 | CDS | 48209684 | 48210297 | 48209684 | ID=cds.MS.gene048603.t1;Parent=MS.gene048603.t1 |
| Gene Sequence |
| Protein sequence |
