AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04863

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04863.t1 MTR_7g092540 91.386 267 21 1 1 267 55 319 0.0 504
MS.gene04863.t1 MTR_7g092540 90.157 254 23 1 1 254 55 306 4.94e-170 472
MS.gene04863.t1 MTR_1g052470 56.107 262 79 5 32 263 115 370 6.13e-84 256
MS.gene04863.t1 MTR_4g065870 38.697 261 131 3 33 267 174 431 8.55e-50 169
MS.gene04863.t1 MTR_2g098310 42.164 268 104 9 35 267 157 408 2.25e-49 168
MS.gene04863.t1 MTR_1g052470 51.208 207 65 5 32 208 115 315 4.08e-49 164
MS.gene04863.t1 MTR_2g098310 42.578 256 96 9 35 255 157 396 2.04e-45 157
MS.gene04863.t1 MTR_6g052280 84.706 85 13 0 150 234 13 97 8.16e-44 145
MS.gene04863.t1 MTR_4g065870 37.805 246 124 3 33 252 174 416 5.78e-43 151
MS.gene04863.t1 MTR_2g098310 36.964 303 105 10 35 267 157 443 2.68e-42 150
MS.gene04863.t1 MTR_3g028520 38.723 235 127 4 40 263 166 394 2.86e-41 146
MS.gene04863.t1 MTR_3g027650 38.723 235 127 4 40 263 166 394 2.86e-41 146
MS.gene04863.t1 MTR_3g027650 39.111 225 120 4 40 253 166 384 2.25e-37 136
MS.gene04863.t1 MTR_8g036235 35.099 302 140 5 2 263 103 388 1.25e-34 129
MS.gene04863.t1 MTR_4g033295 69.620 79 24 0 185 263 112 190 7.34e-34 122
MS.gene04863.t1 MTR_2g098310 39.316 234 91 9 35 233 157 374 2.82e-32 122
MS.gene04863.t1 MTR_1g116790 51.220 123 57 2 146 267 221 341 9.03e-31 117
MS.gene04863.t1 MTR_4g033295 74.286 70 18 0 185 254 112 181 2.82e-30 112
MS.gene04863.t1 MTR_4g065870 33.632 223 119 3 33 229 174 393 1.72e-29 115
MS.gene04863.t1 MTR_3g027650 35.323 201 113 4 40 229 166 360 6.34e-24 99.4
MS.gene04863.t1 MTR_4g033295 84.444 45 7 0 185 229 112 156 7.09e-20 84.7
MS.gene04863.t1 MTR_2g098310 35.407 209 84 9 35 208 157 349 4.77e-18 82.8
MS.gene04863.t1 MTR_8g036235 31.716 268 127 5 2 229 103 354 9.66e-18 82.4
MS.gene04863.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.44e-16 78.2
MS.gene04863.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.44e-16 78.2
MS.gene04863.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.74e-16 77.8
MS.gene04863.t1 MTR_1g017350 52.113 71 34 0 191 261 260 330 3.99e-16 77.8
MS.gene04863.t1 MTR_4g131160 54.412 68 30 1 191 258 196 262 5.17e-16 77.4
MS.gene04863.t1 MTR_4g131160 54.412 68 30 1 191 258 199 265 5.65e-16 77.4
MS.gene04863.t1 MTR_1g080890 50.667 75 36 1 184 258 186 259 1.39e-15 75.9
MS.gene04863.t1 MTR_5g048860 50.000 74 37 0 191 264 365 438 2.10e-15 75.9
MS.gene04863.t1 MTR_3g498825 53.731 67 31 0 191 257 147 213 3.45e-15 74.7
MS.gene04863.t1 MTR_7g053410 48.649 74 38 0 191 264 317 390 5.59e-15 74.7
MS.gene04863.t1 MTR_7g053410 48.649 74 38 0 191 264 317 390 7.27e-15 74.3
MS.gene04863.t1 MTR_3g116770 50.000 74 37 0 191 264 191 264 1.26e-14 73.2
MS.gene04863.t1 MTR_3g116770 50.000 74 37 0 191 264 191 264 1.29e-14 73.2
MS.gene04863.t1 MTR_8g065740 50.725 69 34 0 191 259 305 373 2.03e-14 72.8
MS.gene04863.t1 MTR_8g012290 45.946 74 40 0 191 264 291 364 2.89e-14 72.4
MS.gene04863.t1 MTR_8g012290 45.946 74 40 0 191 264 291 364 2.94e-14 72.4
MS.gene04863.t1 MTR_8g099880 49.275 69 35 0 191 259 145 213 9.95e-14 70.5
MS.gene04863.t1 MTR_4g070320 47.368 76 38 1 184 259 138 211 1.07e-13 70.5
MS.gene04863.t1 MTR_8g062240 47.761 67 35 0 191 257 151 217 6.86e-13 67.4
MS.gene04863.t1 MTR_7g092510 41.892 74 43 0 191 264 173 246 1.23e-11 64.3
MS.gene04863.t1 MTR_5g037250 46.269 67 36 0 191 257 112 178 1.37e-11 63.2
MS.gene04863.t1 MTR_1g018090 53.846 65 29 1 192 256 275 338 3.12e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04863.t1 AT2G42280 48.133 241 106 6 36 267 125 355 1.63e-48 164
MS.gene04863.t1 AT2G42280 48.458 227 98 6 36 253 125 341 2.78e-42 148
MS.gene04863.t1 AT1G51140 57.143 119 44 3 145 263 265 376 1.49e-38 139
MS.gene04863.t1 AT2G43140 58.095 105 43 1 160 263 102 206 6.59e-36 127
MS.gene04863.t1 AT2G43140 58.095 105 43 1 160 263 199 303 2.60e-35 129
MS.gene04863.t1 AT1G35460 61.176 85 33 0 183 267 173 257 1.18e-32 120
MS.gene04863.t1 AT1G05805 57.692 104 42 2 161 263 253 355 8.31e-32 120
MS.gene04863.t1 AT4G09180 59.341 91 35 1 177 267 172 260 2.09e-30 114
MS.gene04863.t1 AT1G35460 76.596 47 11 0 183 229 173 219 2.64e-18 81.6
MS.gene04863.t1 AT2G24260 51.282 78 37 1 181 258 25 101 2.07e-16 77.0
MS.gene04863.t1 AT5G58010 54.412 68 30 1 191 258 99 165 4.04e-16 77.0
MS.gene04863.t1 AT2G24260 51.282 78 37 1 181 258 128 204 4.63e-16 77.4
MS.gene04863.t1 AT4G30980 54.412 68 30 1 191 258 130 196 1.76e-15 75.1
MS.gene04863.t1 AT4G30980 54.412 68 30 1 191 258 178 244 2.03e-15 75.5
MS.gene04863.t1 AT1G10120 53.623 69 32 0 191 259 206 274 2.70e-15 75.1
MS.gene04863.t1 AT1G10120 53.623 69 32 0 191 259 206 274 2.70e-15 75.1
MS.gene04863.t1 AT4G34530 48.649 74 38 0 191 264 172 245 5.06e-15 74.3
MS.gene04863.t1 AT5G50915 53.731 67 31 0 191 257 136 202 7.50e-15 73.2
MS.gene04863.t1 AT5G50915 53.731 67 31 0 191 257 136 202 7.50e-15 73.2
MS.gene04863.t1 AT1G68920 50.725 69 34 0 191 259 302 370 7.95e-15 74.3
MS.gene04863.t1 AT1G68920 50.725 69 34 0 191 259 303 371 8.19e-15 74.3
MS.gene04863.t1 AT1G68920 50.725 69 34 0 191 259 303 371 8.19e-15 74.3
MS.gene04863.t1 AT1G68920 50.725 69 34 0 191 259 303 371 8.19e-15 74.3
MS.gene04863.t1 AT5G50915 53.731 67 31 0 191 257 136 202 8.41e-15 72.8
MS.gene04863.t1 AT5G50915 53.731 67 31 0 191 257 136 202 8.41e-15 72.8
MS.gene04863.t1 AT2G42280 40.110 182 90 6 36 208 125 296 1.32e-14 72.8
MS.gene04863.t1 AT3G07340 47.297 74 39 0 191 264 258 331 2.66e-14 72.8
MS.gene04863.t1 AT3G07340 47.297 74 39 0 191 264 258 331 2.77e-14 72.4
MS.gene04863.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.31e-14 72.0
MS.gene04863.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.31e-14 72.0
MS.gene04863.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.31e-14 72.0
MS.gene04863.t1 AT1G26260 52.239 67 32 0 191 257 223 289 3.31e-14 72.0
MS.gene04863.t1 AT1G26260 52.239 67 32 0 191 257 201 267 3.54e-14 72.0
MS.gene04863.t1 AT1G26260 52.239 67 32 0 191 257 172 238 3.80e-14 71.6
MS.gene04863.t1 AT1G25330 47.761 67 35 0 191 257 104 170 8.01e-14 69.3
MS.gene04863.t1 AT5G48560 49.254 67 34 0 191 257 301 367 2.31e-13 70.1
MS.gene04863.t1 AT5G48560 49.254 67 34 0 191 257 301 367 2.42e-13 69.7
MS.gene04863.t1 AT3G23690 45.946 74 40 0 191 264 191 264 3.28e-13 69.3
MS.gene04863.t1 AT4G36540 44.156 77 41 1 181 257 133 207 5.48e-13 68.2
MS.gene04863.t1 AT4G36540 44.156 77 41 1 181 257 133 207 5.61e-13 68.2
MS.gene04863.t1 AT1G18400 47.761 67 35 0 191 257 145 211 1.30e-12 66.2
MS.gene04863.t1 AT1G18400 47.761 67 35 0 191 257 145 211 2.19e-12 65.9
MS.gene04863.t1 AT2G18300 46.377 69 37 0 191 259 185 253 2.44e-12 66.2
MS.gene04863.t1 AT1G59640 47.761 67 35 0 191 257 136 202 2.46e-12 65.9
MS.gene04863.t1 AT2G18300 46.377 69 37 0 191 259 185 253 2.66e-12 66.2
MS.gene04863.t1 AT2G42300 43.243 74 42 0 191 264 185 258 2.99e-12 66.2
MS.gene04863.t1 AT3G57800 43.243 74 42 0 191 264 204 277 3.01e-12 66.2
MS.gene04863.t1 AT2G18300 46.377 69 37 0 191 259 185 253 3.30e-12 66.2
MS.gene04863.t1 AT1G73830 44.776 67 37 0 191 257 147 213 3.77e-12 65.1
MS.gene04863.t1 AT1G73830 44.776 67 37 0 191 257 147 213 3.96e-12 65.1
MS.gene04863.t1 AT2G42300 43.243 74 42 0 191 264 185 258 5.02e-12 65.1
MS.gene04863.t1 AT1G59640 47.761 67 35 0 191 257 136 202 8.08e-12 65.1
MS.gene04863.t1 AT5G62610 44.776 67 37 0 191 257 153 219 1.95e-11 63.2
MS.gene04863.t1 AT5G62610 44.776 67 37 0 191 257 153 219 1.95e-11 63.2
MS.gene04863.t1 AT2G14760 53.846 65 29 1 192 256 238 301 3.44e-11 63.2

Find 51 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCACCTTTATGATTAAA+AGG 0.243027 7.2:+16381918 None:intergenic
CTCAAGGAAGAAGGACTTCT+TGG 0.270896 7.2:+16380861 None:intergenic
CTTTATGATTAAAAGGATTA+TGG 0.272914 7.2:+16381925 None:intergenic
AACATATTGAACAATCAAAT+TGG 0.290694 7.2:-16380891 MS.gene04863:CDS
ACCCTTTCGGCAAGGCTTCT+AGG 0.305032 7.2:+16380464 None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG 0.326997 7.2:+16380451 None:intergenic
ATGCTGCTCGGAACAGAATC+TGG 0.330247 7.2:+16380515 None:intergenic
AATGTTTATTGTGGAGAATT+TGG 0.338878 7.2:-16380546 MS.gene04863:CDS
AATGAGGATGCTCAATATTA+TGG 0.342968 7.2:-16380759 MS.gene04863:CDS
ATTCTGACCTTATCAATGTT+TGG 0.345820 7.2:+16380392 None:intergenic
AACAACAACATCATCTCCTT+TGG 0.393746 7.2:-16381768 MS.gene04863:CDS
TCCTAGAAGCCTTGCCGAAA+GGG 0.399735 7.2:-16380465 MS.gene04863:CDS
AACATCATCTCCTTTGGAAA+TGG 0.414195 7.2:-16381762 MS.gene04863:intron
CTCTTTGCTCTGATGCTGCT+CGG 0.438402 7.2:+16380503 None:intergenic
ACCACTCTGTCTTAAAAGAT+TGG 0.442108 7.2:+16381812 None:intergenic
AAAGGAGATGATGTTGTTGT+TGG 0.459546 7.2:+16381770 None:intergenic
TCGGAACAGAATCTGGAAAC+TGG 0.461159 7.2:+16380522 None:intergenic
CATTTATGATTCTAATGACC+AGG 0.461256 7.2:-16380727 MS.gene04863:intron
GGTTGTTCCAAACATTGATA+AGG 0.462084 7.2:-16380399 MS.gene04863:intron
AGACAGAGTGGTTCCCATGC+TGG 0.479729 7.2:-16381801 MS.gene04863:CDS
AAAGGTGTTGAAAACTATGA+TGG 0.487777 7.2:-16380951 MS.gene04863:CDS
CACATCAGAAATGTTAGACT+TGG 0.499859 7.2:-16380273 MS.gene04863:CDS
AAGACACATGAATTCTCAGC+AGG 0.502231 7.2:-16381868 MS.gene04863:CDS
TTCTCAGCAGGGTTATAGAA+TGG 0.503073 7.2:-16381856 MS.gene04863:CDS
ATCATCAGAAATGTTTATTG+TGG 0.507405 7.2:-16380555 MS.gene04863:CDS
TTGATGTTACTCAGAACGTA+GGG 0.512000 7.2:-16380628 MS.gene04863:intron
GATAACATTCTCAAGGAAGA+AGG 0.538937 7.2:+16380852 None:intergenic
ATCCTAGAAGCCTTGCCGAA+AGG 0.543719 7.2:-16380466 MS.gene04863:CDS
AACTCTAAAACGAGGAGTGA+TGG 0.547308 7.2:-16380825 MS.gene04863:CDS
TTCTTCTTACCCTTTCGGCA+AGG 0.550067 7.2:+16380456 None:intergenic
CCGAAAGGGTAAGAAGAACT+CGG 0.565752 7.2:-16380451 MS.gene04863:CDS
CTCCTTGTCTTCGATCATCA+CGG 0.577461 7.2:+16380787 None:intergenic
AAAACGAGGAGTGATGGCAT+TGG 0.578334 7.2:-16380819 MS.gene04863:CDS
GCAGGGTATGAATCTATGAA+AGG 0.606763 7.2:-16380969 MS.gene04863:intron
TTTGATGTTACTCAGAACGT+AGG 0.607876 7.2:-16380629 MS.gene04863:intron
AAGGTGTTGAAAACTATGAT+GGG 0.612325 7.2:-16380950 MS.gene04863:CDS
GTTATGTGATAACATTCTCA+AGG 0.612399 7.2:+16380845 None:intergenic
TACTACAATACCATTTCCAA+AGG 0.613692 7.2:+16381752 None:intergenic
AGCAGCATCAGAGCAAAGAG+AGG 0.624459 7.2:-16380500 MS.gene04863:CDS
ACGAATGAGAAAATTGCAAG+AGG 0.630200 7.2:-16380420 MS.gene04863:CDS
TATAGAATGGATCAACACAA+AGG 0.657311 7.2:-16381843 MS.gene04863:CDS
AGCCGTGATGATCGAAGACA+AGG 0.662100 7.2:-16380789 MS.gene04863:CDS
GTTGGAGAAATGACCAGCAT+GGG 0.675608 7.2:+16381788 None:intergenic
TGTTGGAGAAATGACCAGCA+TGG 0.677077 7.2:+16381787 None:intergenic
CGTGATGATCGAAGACAAGG+AGG 0.691311 7.2:-16380786 MS.gene04863:CDS
AGACACATGAATTCTCAGCA+GGG 0.696388 7.2:-16381867 MS.gene04863:CDS
GATGGGGTGAATGACAGTGA+TGG 0.701721 7.2:-16380933 MS.gene04863:CDS
TGATGTTACTCAGAACGTAG+GGG 0.704763 7.2:-16380627 MS.gene04863:intron
AAGACAAGGAGGTAGCAATG+AGG 0.720936 7.2:-16380775 MS.gene04863:CDS
AGGTGTTGAAAACTATGATG+GGG 0.756832 7.2:-16380949 MS.gene04863:CDS
TATCACATAACTCTAAAACG+AGG 0.781502 7.2:-16380833 MS.gene04863:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAACATAACTTTTTTT+AGG - chr7.2:16380553-16380572 MS.gene04863:CDS 10.0%
!! AAAAAAGTTATTTATGTACA+AGG - chr7.2:16380794-16380813 MS.gene04863:CDS 15.0%
!! AAAAACATAATTGTCTTAAA+AGG + chr7.2:16381668-16381687 None:intergenic 15.0%
!! AAAAAGTTATTTATGTACAA+GGG - chr7.2:16380795-16380814 MS.gene04863:CDS 15.0%
!! AAAACATAATTGTCTTAAAA+GGG + chr7.2:16381667-16381686 None:intergenic 15.0%
!! ATTAAAATATATATTAGTGC+AGG + chr7.2:16381873-16381892 None:intergenic 15.0%
!! GCTAAATCTAAAAAAAAAAT+GGG - chr7.2:16380587-16380606 MS.gene04863:CDS 15.0%
!! TGCTAAATCTAAAAAAAAAA+TGG - chr7.2:16380586-16380605 MS.gene04863:CDS 15.0%
!! TTATCATTAAGAATAGAATT+CGG - chr7.2:16380628-16380647 MS.gene04863:intron 15.0%
!!! AGTTAAACATTGTTTAATTT+TGG - chr7.2:16381698-16381717 MS.gene04863:intron 15.0%
!! AAACATAATTGTCTTAAAAG+GGG + chr7.2:16381666-16381685 None:intergenic 20.0%
!! AACAATTTCTGTCTAATTTA+TGG - chr7.2:16380848-16380867 MS.gene04863:CDS 20.0%
!! AACATATTGAACAATCAAAT+TGG - chr7.2:16381114-16381133 MS.gene04863:intron 20.0%
!! AGATCTTCAAAAACAATTAA+AGG - chr7.2:16381771-16381790 MS.gene04863:CDS 20.0%
!! CTTTATGATTAAAAGGATTA+TGG + chr7.2:16380083-16380102 None:intergenic 20.0%
!!! ATTCTATTTTAAGAAAGTGT+AGG + chr7.2:16380386-16380405 None:intergenic 20.0%
!!! ATTTAGTGTTAAATGACTTT+TGG - chr7.2:16380528-16380547 MS.gene04863:CDS 20.0%
!!! CATAATCCTTTTAATCATAA+AGG - chr7.2:16380081-16380100 MS.gene04863:CDS 20.0%
!!! TTCTATTTTAAGAAAGTGTA+GGG + chr7.2:16380385-16380404 None:intergenic 20.0%
! AACATAATTGTCTTAAAAGG+GGG + chr7.2:16381665-16381684 None:intergenic 25.0%
! AATGTTTATTGTGGAGAATT+TGG - chr7.2:16381459-16381478 MS.gene04863:intron 25.0%
! ACTAAAATTGTATCTTGTGT+TGG + chr7.2:16380488-16380507 None:intergenic 25.0%
! ATCATCAGAAATGTTTATTG+TGG - chr7.2:16381450-16381469 MS.gene04863:intron 25.0%
! GCATATAAATGTAAATTGCA+GGG - chr7.2:16381019-16381038 MS.gene04863:intron 25.0%
! TGCATATAAATGTAAATTGC+AGG - chr7.2:16381018-16381037 MS.gene04863:intron 25.0%
! TGTATTTCATTGTAGTTACA+TGG - chr7.2:16380715-16380734 MS.gene04863:intron 25.0%
! TTGTCACCTTTATGATTAAA+AGG + chr7.2:16380090-16380109 None:intergenic 25.0%
!! AACATTTCTGATGATTTTCT+TGG + chr7.2:16381445-16381464 None:intergenic 25.0%
!! TTTCTTCTAGACAACTTTTT+AGG - chr7.2:16380331-16380350 MS.gene04863:intron 25.0%
!!! GCAATTTTTTGTGAATATAG+TGG - chr7.2:16380446-16380465 MS.gene04863:CDS 25.0%
AAGTTAACCTGTTATATACC+TGG + chr7.2:16381299-16381318 None:intergenic 30.0%
AAGTTATTTATGTACAAGGG+AGG - chr7.2:16380798-16380817 MS.gene04863:CDS 30.0%
AATGAGGATGCTCAATATTA+TGG - chr7.2:16381246-16381265 MS.gene04863:intron 30.0%
AATTGCGAATCAGCAAAATT+AGG + chr7.2:16381357-16381376 None:intergenic 30.0%
ACTAATCATGATTAACTGCA+TGG + chr7.2:16381845-16381864 None:intergenic 30.0%
ATTCTGACCTTATCAATGTT+TGG + chr7.2:16381616-16381635 None:intergenic 30.0%
CATTTATGATTCTAATGACC+AGG - chr7.2:16381278-16381297 MS.gene04863:intron 30.0%
CTAATGTGATTCATATTGCT+AGG + chr7.2:16380972-16380991 None:intergenic 30.0%
GATTCAAATCATGAGATAGT+AGG - chr7.2:16380887-16380906 MS.gene04863:CDS 30.0%
GTTATGTGATAACATTCTCA+AGG + chr7.2:16381163-16381182 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG + chr7.2:16381833-16381852 None:intergenic 30.0%
TACTACAATACCATTTCCAA+AGG + chr7.2:16380256-16380275 None:intergenic 30.0%
TAGGAGACAAAATTGCATTT+AGG + chr7.2:16381338-16381357 None:intergenic 30.0%
TATAGAATGGATCAACACAA+AGG - chr7.2:16380162-16380181 MS.gene04863:intron 30.0%
TTAACTGCATGGAAATGAAT+AGG + chr7.2:16381834-16381853 None:intergenic 30.0%
! CTAGTTCAATGTTTCTTTTG+GGG - chr7.2:16380354-16380373 MS.gene04863:intron 30.0%
! GCTAGTTCAATGTTTCTTTT+GGG - chr7.2:16380353-16380372 MS.gene04863:intron 30.0%
! TAGTTCAATGTTTCTTTTGG+GGG - chr7.2:16380355-16380374 MS.gene04863:intron 30.0%
!! AAAGGTGTTGAAAACTATGA+TGG - chr7.2:16381054-16381073 MS.gene04863:intron 30.0%
!! AAGGTGTTGAAAACTATGAT+GGG - chr7.2:16381055-16381074 MS.gene04863:intron 30.0%
!! TATCACATAACTCTAAAACG+AGG - chr7.2:16381172-16381191 MS.gene04863:intron 30.0%
AAAGGAGATGATGTTGTTGT+TGG + chr7.2:16380238-16380257 None:intergenic 35.0%
AAATGCTAAACAAGCATAGG+TGG - chr7.2:16380922-16380941 MS.gene04863:CDS 35.0%
AACAACAACATCATCTCCTT+TGG - chr7.2:16380237-16380256 MS.gene04863:CDS 35.0%
AACTGCATGGAAATGAATAG+GGG + chr7.2:16381832-16381851 None:intergenic 35.0%
ACCACTCTGTCTTAAAAGAT+TGG + chr7.2:16380196-16380215 None:intergenic 35.0%
ACGAATGAGAAAATTGCAAG+AGG - chr7.2:16381585-16381604 MS.gene04863:intron 35.0%
CACAAATGCTAAACAAGCAT+AGG - chr7.2:16380919-16380938 MS.gene04863:CDS 35.0%
CACATCAGAAATGTTAGACT+TGG - chr7.2:16381732-16381751 MS.gene04863:intron 35.0%
CTAATGACCAGGTATATAAC+AGG - chr7.2:16381289-16381308 MS.gene04863:intron 35.0%
CTAATTCTAACGCTATTCGT+TGG + chr7.2:16380689-16380708 None:intergenic 35.0%
CTATGCTTGTTTAGCATTTG+TGG + chr7.2:16380921-16380940 None:intergenic 35.0%
GATAACATTCTCAAGGAAGA+AGG + chr7.2:16381156-16381175 None:intergenic 35.0%
GGTTGTTCCAAACATTGATA+AGG - chr7.2:16381606-16381625 MS.gene04863:intron 35.0%
TTGATGTTACTCAGAACGTA+GGG - chr7.2:16381377-16381396 MS.gene04863:intron 35.0%
TTTGATGTTACTCAGAACGT+AGG - chr7.2:16381376-16381395 MS.gene04863:intron 35.0%
! AACATCATCTCCTTTGGAAA+TGG - chr7.2:16380243-16380262 MS.gene04863:CDS 35.0%
!! AGGTGTTGAAAACTATGATG+GGG - chr7.2:16381056-16381075 MS.gene04863:intron 35.0%
!! GGCTAGTTCAATGTTTCTTT+TGG - chr7.2:16380352-16380371 MS.gene04863:intron 35.0%
!!! ACCAATCTTTTAAGACAGAG+TGG - chr7.2:16380192-16380211 MS.gene04863:intron 35.0%
AAGACACATGAATTCTCAGC+AGG - chr7.2:16380137-16380156 MS.gene04863:intron 40.0%
AGACACATGAATTCTCAGCA+GGG - chr7.2:16380138-16380157 MS.gene04863:intron 40.0%
GCAGGGTATGAATCTATGAA+AGG - chr7.2:16381036-16381055 MS.gene04863:intron 40.0%
GTGAATATAGTGGTCAGCTA+AGG - chr7.2:16380456-16380475 MS.gene04863:CDS 40.0%
TATAGTGGTCAGCTAAGGTT+TGG - chr7.2:16380461-16380480 MS.gene04863:CDS 40.0%
TGATGTTACTCAGAACGTAG+GGG - chr7.2:16381378-16381397 MS.gene04863:intron 40.0%
TTCTCAGCAGGGTTATAGAA+TGG - chr7.2:16380149-16380168 MS.gene04863:intron 40.0%
!! AACTCTAAAACGAGGAGTGA+TGG - chr7.2:16381180-16381199 MS.gene04863:intron 40.0%
AAAACGAGGAGTGATGGCAT+TGG - chr7.2:16381186-16381205 MS.gene04863:intron 45.0%
AAGACAAGGAGGTAGCAATG+AGG - chr7.2:16381230-16381249 MS.gene04863:intron 45.0%
CCGAAAGGGTAAGAAGAACT+CGG - chr7.2:16381554-16381573 MS.gene04863:intron 45.0%
CCGAGTTCTTCTTACCCTTT+CGG + chr7.2:16381557-16381576 None:intergenic 45.0%
CTCAAGGAAGAAGGACTTCT+TGG + chr7.2:16381147-16381166 None:intergenic 45.0%
CTCCTTGTCTTCGATCATCA+CGG + chr7.2:16381221-16381240 None:intergenic 45.0%
GTTGGAGAAATGACCAGCAT+GGG + chr7.2:16380220-16380239 None:intergenic 45.0%
TCGGAACAGAATCTGGAAAC+TGG + chr7.2:16381486-16381505 None:intergenic 45.0%
TGTTGGAGAAATGACCAGCA+TGG + chr7.2:16380221-16380240 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG + chr7.2:16381552-16381571 None:intergenic 45.0%
!!! TTAACTTTTTTTTTTTTATT+AGG - chr7.2:16381312-16381331 MS.gene04863:intron 5.0%
AGCAGCATCAGAGCAAAGAG+AGG - chr7.2:16381505-16381524 MS.gene04863:intron 50.0%
AGCCGTGATGATCGAAGACA+AGG - chr7.2:16381216-16381235 MS.gene04863:intron 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG - chr7.2:16381539-16381558 MS.gene04863:intron 50.0%
ATGCTGCTCGGAACAGAATC+TGG + chr7.2:16381493-16381512 None:intergenic 50.0%
CGTGATGATCGAAGACAAGG+AGG - chr7.2:16381219-16381238 MS.gene04863:intron 50.0%
CTCTTTGCTCTGATGCTGCT+CGG + chr7.2:16381505-16381524 None:intergenic 50.0%
GATGGGGTGAATGACAGTGA+TGG - chr7.2:16381072-16381091 MS.gene04863:intron 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG - chr7.2:16381540-16381559 MS.gene04863:intron 50.0%
ACCCTTTCGGCAAGGCTTCT+AGG + chr7.2:16381544-16381563 None:intergenic 55.0%
AGACAGAGTGGTTCCCATGC+TGG - chr7.2:16380204-16380223 MS.gene04863:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16380075 16381952 16380075 ID=MS.gene04863
chr7.2 mRNA 16380075 16381952 16380075 ID=MS.gene04863.t1;Parent=MS.gene04863
chr7.2 exon 16381763 16381952 16381763 ID=MS.gene04863.t1.exon1;Parent=MS.gene04863.t1
chr7.2 CDS 16381763 16381952 16381763 ID=cds.MS.gene04863.t1;Parent=MS.gene04863.t1
chr7.2 exon 16380728 16380987 16380728 ID=MS.gene04863.t1.exon2;Parent=MS.gene04863.t1
chr7.2 CDS 16380728 16380987 16380728 ID=cds.MS.gene04863.t1;Parent=MS.gene04863.t1
chr7.2 exon 16380400 16380636 16380400 ID=MS.gene04863.t1.exon3;Parent=MS.gene04863.t1
chr7.2 CDS 16380400 16380636 16380400 ID=cds.MS.gene04863.t1;Parent=MS.gene04863.t1
chr7.2 exon 16380235 16380303 16380235 ID=MS.gene04863.t1.exon4;Parent=MS.gene04863.t1
chr7.2 CDS 16380235 16380303 16380235 ID=cds.MS.gene04863.t1;Parent=MS.gene04863.t1
chr7.2 exon 16380075 16380122 16380075 ID=MS.gene04863.t1.exon5;Parent=MS.gene04863.t1
chr7.2 CDS 16380075 16380122 16380075 ID=cds.MS.gene04863.t1;Parent=MS.gene04863.t1
Gene Sequence

>MS.gene04863

ATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGTATTGTAGTACTTTTTCTATTTCTGTTTTTTGTCTTGATTTTGACTTTTTTGTTCAATGATTTAATTTCTTCTAGACAACTTTTTAGGCTAGTTCAATGTTTCTTTTGGGGGCTGTCCCTACACTTTCTTAAAATAGAATTTGAAATTATAATTAATATTTTGTGCTCAAGAAATAGAGTGCAATTTTTTGTGAATATAGTGGTCAGCTAAGGTTTGGTCCAACACAAGATACAATTTTAGTCATCGTAGAGAGACATTTGCATTTAGTGTTAAATGACTTTTGGAAATTAAAACATAACTTTTTTTAGGACAGACATGTTGCTAAATCTAAAAAAAAAATGGGAGCTAAATCAATTTTTTTTTATCATTAAGAATAGAATTCGGAATTTTGAGTTTACAACACTCACACATACTATGCACCAACGAATAGCGTTAGAATTAGATAGATTGTATTTCATTGTAGTTACATGGATATTCAACATAAATATATAACGTATACATAAGTTATTTATGTGTGTAACAAAAAAAAAAAAGTTATTTATGTACAAGGGAGGCATTTATGTCTAATTATTATTTTTTTTAACAATTTCTGTCTAATTTATGGTTGTTTATAATTTGCTGATTCAAATCATGAGATAGTAGGACTTAATTCCACAAATGCTAAACAAGCATAGGTGGATTCATTCTCTGAAGATTTATTTACCTAGCAATATGAATCACATTAGATTTTCACATTTTTAAACATTATTTATGCATATAAATGTAAATTGCAGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGGTATATAACAGGTTAACTTTTTTTTTTTTATTAGGCCTAAATGCAATTTTGTCTCCTAATTTTGCTGATTCGCAATTTTGATGTTACTCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCAGTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGGTCAGAATCATCATCACACAGTTGTTGATTTTTTCCCCCTTTTAAGACAATTATGTTTTTGTGTTTAGAAAGTTAAACATTGTTTAATTTTGGCAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGGTACTTAATTAAATTTATAAGTTAGTTAATTTTATTCCCCTATTCATTTCCATGCAGTTAATCATGATTAGTTCATGCCTGCACTAATATATATTTTAATTACTTTATGCAGACTATGAGTGCAAAAAGAGCTAAGTGCAGATGCAGAAACAAGAAATGA
Protein sequence

>MS.gene04863.t1

MDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHQLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNKK