Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048678.t1 | XP_024635654.1 | 93 | 242 | 14 | 1 | 1 | 239 | 1 | 242 | 4.90E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048678.t1 | Q9FJK3 | 63.3 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 5.1e-56 | 219.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048678.t1 | G7J8R0 | 93.0 | 242 | 14 | 1 | 1 | 239 | 1 | 242 | 3.6e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048678.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048678.t1 | MTR_3g065100 | 96.281 | 242 | 6 | 1 | 1 | 239 | 1 | 242 | 2.51e-174 | 479 |
| MS.gene048678.t1 | MTR_3g466980 | 54.357 | 241 | 83 | 4 | 1 | 234 | 1 | 221 | 7.42e-83 | 246 |
| MS.gene048678.t1 | MTR_8g036130 | 57.143 | 245 | 94 | 6 | 1 | 235 | 1 | 244 | 3.54e-80 | 241 |
| MS.gene048678.t1 | MTR_4g032620 | 50.847 | 236 | 107 | 4 | 1 | 235 | 1 | 228 | 7.35e-77 | 232 |
| MS.gene048678.t1 | MTR_4g031910 | 49.794 | 243 | 97 | 6 | 1 | 235 | 1 | 226 | 3.24e-65 | 202 |
| MS.gene048678.t1 | MTR_4g032290 | 50.617 | 243 | 97 | 6 | 1 | 235 | 1 | 228 | 9.58e-60 | 188 |
| MS.gene048678.t1 | MTR_3g466830 | 51.899 | 158 | 76 | 0 | 3 | 160 | 2 | 159 | 5.52e-55 | 174 |
| MS.gene048678.t1 | MTR_4g032260 | 61.290 | 155 | 59 | 1 | 1 | 154 | 1 | 155 | 4.42e-54 | 171 |
| MS.gene048678.t1 | MTR_4g063790 | 51.220 | 164 | 79 | 1 | 1 | 163 | 1 | 164 | 1.24e-52 | 168 |
| MS.gene048678.t1 | MTR_2g035610 | 68.033 | 122 | 39 | 0 | 1 | 122 | 1 | 122 | 6.30e-52 | 164 |
| MS.gene048678.t1 | MTR_3g466890 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 4.54e-49 | 159 |
| MS.gene048678.t1 | MTR_3g467080 | 49.032 | 155 | 78 | 1 | 1 | 154 | 1 | 155 | 1.35e-48 | 157 |
| MS.gene048678.t1 | MTR_5g047580 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 1.56e-46 | 152 |
| MS.gene048678.t1 | MTR_5g075380 | 42.593 | 162 | 93 | 0 | 1 | 162 | 1 | 162 | 6.66e-46 | 150 |
| MS.gene048678.t1 | MTR_3g031100 | 41.341 | 179 | 100 | 2 | 1 | 178 | 1 | 175 | 1.68e-43 | 147 |
| MS.gene048678.t1 | MTR_2g016210 | 41.294 | 201 | 106 | 3 | 1 | 197 | 1 | 193 | 2.80e-42 | 144 |
| MS.gene048678.t1 | MTR_1g077390 | 46.497 | 157 | 83 | 1 | 1 | 157 | 1 | 156 | 5.58e-42 | 140 |
| MS.gene048678.t1 | MTR_7g011950 | 50.955 | 157 | 76 | 1 | 1 | 157 | 1 | 156 | 2.27e-41 | 139 |
| MS.gene048678.t1 | MTR_1g090697 | 42.949 | 156 | 88 | 1 | 1 | 156 | 1 | 155 | 8.37e-41 | 137 |
| MS.gene048678.t1 | MTR_1g084950 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 6.19e-40 | 135 |
| MS.gene048678.t1 | MTR_1g077320 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 8.39e-40 | 135 |
| MS.gene048678.t1 | MTR_3g031240 | 40.123 | 162 | 96 | 1 | 1 | 161 | 1 | 162 | 2.93e-39 | 134 |
| MS.gene048678.t1 | MTR_4g028720 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 6.95e-38 | 130 |
| MS.gene048678.t1 | MTR_1g090710 | 40.127 | 157 | 92 | 2 | 1 | 156 | 1 | 156 | 7.43e-37 | 127 |
| MS.gene048678.t1 | MTR_1g090783 | 41.558 | 154 | 89 | 1 | 3 | 156 | 2 | 154 | 1.03e-36 | 127 |
| MS.gene048678.t1 | MTR_3g466900 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 3.32e-36 | 125 |
| MS.gene048678.t1 | MTR_3g465410 | 46.923 | 130 | 68 | 1 | 29 | 157 | 1 | 130 | 3.83e-36 | 125 |
| MS.gene048678.t1 | MTR_2g035580 | 43.506 | 154 | 87 | 0 | 1 | 154 | 1 | 154 | 1.04e-35 | 124 |
| MS.gene048678.t1 | MTR_1g077300 | 48.408 | 157 | 78 | 2 | 1 | 157 | 1 | 154 | 1.27e-34 | 121 |
| MS.gene048678.t1 | MTR_3g466930 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 1.94e-34 | 120 |
| MS.gene048678.t1 | MTR_5g047560 | 41.026 | 156 | 75 | 2 | 1 | 156 | 1 | 139 | 1.16e-30 | 110 |
| MS.gene048678.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 1.59e-28 | 103 |
| MS.gene048678.t1 | MTR_4g028800 | 69.444 | 72 | 20 | 1 | 1 | 72 | 1 | 70 | 3.49e-28 | 102 |
| MS.gene048678.t1 | MTR_7g055790 | 51.351 | 111 | 36 | 1 | 1 | 111 | 59 | 151 | 8.62e-26 | 99.0 |
| MS.gene048678.t1 | MTR_4g084780 | 94.000 | 50 | 3 | 0 | 74 | 123 | 1 | 50 | 2.27e-25 | 97.8 |
| MS.gene048678.t1 | MTR_6g018920 | 29.630 | 243 | 133 | 9 | 1 | 233 | 1 | 215 | 2.73e-24 | 99.4 |
| MS.gene048678.t1 | MTR_4g019670 | 38.462 | 117 | 72 | 0 | 3 | 119 | 6 | 122 | 1.09e-23 | 99.4 |
| MS.gene048678.t1 | MTR_7g106510 | 38.525 | 122 | 72 | 1 | 1 | 119 | 1 | 122 | 3.85e-23 | 97.8 |
| MS.gene048678.t1 | MTR_7g055940 | 45.283 | 106 | 30 | 2 | 1 | 106 | 1 | 78 | 4.02e-22 | 87.0 |
| MS.gene048678.t1 | MTR_1g114730 | 27.049 | 244 | 140 | 8 | 1 | 234 | 1 | 216 | 3.78e-20 | 87.8 |
| MS.gene048678.t1 | MTR_3g093900 | 27.564 | 156 | 113 | 0 | 3 | 158 | 6 | 161 | 4.93e-20 | 89.0 |
| MS.gene048678.t1 | MTR_6g005450 | 26.749 | 243 | 142 | 9 | 1 | 234 | 1 | 216 | 1.16e-19 | 86.7 |
| MS.gene048678.t1 | MTR_2g035590 | 50.562 | 89 | 43 | 1 | 74 | 161 | 1 | 89 | 2.31e-19 | 80.5 |
| MS.gene048678.t1 | MTR_6g005440 | 26.087 | 184 | 120 | 5 | 1 | 178 | 1 | 174 | 1.13e-15 | 75.1 |
| MS.gene048678.t1 | MTR_2g049610 | 24.686 | 239 | 165 | 7 | 1 | 237 | 1 | 226 | 2.10e-12 | 65.1 |
| MS.gene048678.t1 | MTR_4g045977 | 24.623 | 199 | 132 | 5 | 1 | 189 | 1 | 191 | 3.63e-12 | 65.5 |
| MS.gene048678.t1 | MTR_4g107170 | 26.627 | 169 | 113 | 4 | 1 | 166 | 1 | 161 | 1.40e-11 | 62.8 |
| MS.gene048678.t1 | MTR_2g085250 | 27.615 | 239 | 147 | 10 | 3 | 226 | 10 | 237 | 7.89e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048678.t1 | AT5G48670 | 56.164 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 3.25e-70 | 218 |
| MS.gene048678.t1 | AT1G65300 | 43.678 | 174 | 98 | 0 | 3 | 176 | 2 | 175 | 1.16e-50 | 166 |
| MS.gene048678.t1 | AT1G65330 | 47.222 | 180 | 93 | 1 | 3 | 180 | 2 | 181 | 4.00e-50 | 165 |
| MS.gene048678.t1 | AT3G05860 | 44.505 | 182 | 96 | 2 | 1 | 177 | 1 | 182 | 4.09e-48 | 159 |
| MS.gene048678.t1 | AT3G05860 | 51.007 | 149 | 73 | 0 | 1 | 149 | 1 | 149 | 4.93e-48 | 157 |
| MS.gene048678.t1 | AT5G26630 | 47.120 | 191 | 99 | 2 | 1 | 191 | 1 | 189 | 8.54e-48 | 157 |
| MS.gene048678.t1 | AT3G05860 | 41.709 | 199 | 111 | 2 | 1 | 194 | 1 | 199 | 1.21e-47 | 158 |
| MS.gene048678.t1 | AT5G26650 | 44.654 | 159 | 88 | 0 | 4 | 162 | 2 | 160 | 1.44e-43 | 150 |
| MS.gene048678.t1 | AT5G27960 | 44.025 | 159 | 89 | 0 | 4 | 162 | 2 | 160 | 1.36e-42 | 147 |
| MS.gene048678.t1 | AT1G31630 | 42.405 | 158 | 90 | 1 | 3 | 160 | 2 | 158 | 1.19e-41 | 145 |
| MS.gene048678.t1 | AT5G27810 | 66.667 | 93 | 31 | 0 | 29 | 121 | 1 | 93 | 5.28e-40 | 134 |
| MS.gene048678.t1 | AT1G31640 | 41.875 | 160 | 92 | 1 | 3 | 162 | 2 | 160 | 7.05e-39 | 140 |
| MS.gene048678.t1 | AT2G28700 | 35.135 | 185 | 111 | 4 | 1 | 179 | 1 | 182 | 6.06e-34 | 124 |
| MS.gene048678.t1 | AT5G26580 | 39.375 | 160 | 83 | 1 | 1 | 160 | 1 | 146 | 5.07e-32 | 120 |
| MS.gene048678.t1 | AT1G22590 | 35.714 | 154 | 96 | 1 | 1 | 154 | 1 | 151 | 2.43e-26 | 100 |
| MS.gene048678.t1 | AT2G40210 | 43.902 | 123 | 69 | 0 | 1 | 123 | 1 | 123 | 5.86e-24 | 99.0 |
| MS.gene048678.t1 | AT5G06500 | 37.815 | 119 | 74 | 0 | 1 | 119 | 1 | 119 | 1.53e-21 | 90.1 |
| MS.gene048678.t1 | AT5G55690 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 5.36e-18 | 81.3 |
| MS.gene048678.t1 | AT5G55690 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 5.36e-18 | 81.3 |
| MS.gene048678.t1 | AT5G58890 | 30.625 | 160 | 96 | 3 | 1 | 154 | 1 | 151 | 1.31e-13 | 69.3 |
| MS.gene048678.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene048678.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene048678.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene048678.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.89e-11 | 61.2 |
| MS.gene048678.t1 | AT1G59930 | 34.211 | 114 | 64 | 3 | 84 | 192 | 1 | 108 | 5.53e-11 | 58.9 |
| MS.gene048678.t1 | AT5G35120 | 32.967 | 91 | 61 | 0 | 84 | 174 | 1 | 91 | 6.46e-11 | 58.2 |
Find 55 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTATCCTTTCTTTGTT+TGG | 0.241148 | 3.4:-66539588 | None:intergenic |
| TGTCCATTCTCTTCAATCTT+AGG | 0.274749 | 3.4:-66539821 | None:intergenic |
| GATTTGGCCAAAACCCATTT+GGG | 0.290435 | 3.4:-66539967 | None:intergenic |
| TTTATGAACTTGATGAATAA+TGG | 0.322309 | 3.4:+66539905 | MS.gene048678:CDS |
| ATGCTTATATTGTGCATAAC+TGG | 0.326699 | 3.4:-66539656 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | 3.4:+66539355 | MS.gene048678:CDS |
| CATGGTTGATTTGAATGATA+TGG | 0.333296 | 3.4:+66539676 | MS.gene048678:CDS |
| GAGTCATGGTCAACATGTTT+TGG | 0.338044 | 3.4:+66539847 | MS.gene048678:CDS |
| GGATTTGGCCAAAACCCATT+TGG | 0.342692 | 3.4:-66539968 | None:intergenic |
| GAGGTTTGGCCGTCTCCTTT+AGG | 0.389676 | 3.4:+66539449 | MS.gene048678:CDS |
| TGGGGATCAGGCACCTCCTA+TGG | 0.395072 | 3.4:+66539931 | MS.gene048678:CDS |
| GAATAATGGTGGTGGGGATC+AGG | 0.411629 | 3.4:+66539919 | MS.gene048678:CDS |
| AATGGTCGTAGCACCAACTA+TGG | 0.416139 | 3.4:+66539784 | MS.gene048678:CDS |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | 3.4:-66539431 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.426927 | 3.4:+66539435 | MS.gene048678:CDS |
| AGTATTTGAAAGATATCAAT+AGG | 0.431729 | 3.4:+66539714 | MS.gene048678:CDS |
| AAAGGAGACGGCCAAACCTC+TGG | 0.476094 | 3.4:-66539446 | None:intergenic |
| GTCTCCTTTAGGAGTTCAAA+GGG | 0.477655 | 3.4:+66539460 | MS.gene048678:CDS |
| CGTCTCCTTTAGGAGTTCAA+AGG | 0.479690 | 3.4:+66539459 | MS.gene048678:CDS |
| GGAAGGCAACATTCAAGAAA+AGG | 0.489208 | 3.4:+66539333 | MS.gene048678:CDS |
| TCAATTGACCAAACAAAGAA+AGG | 0.490968 | 3.4:+66539580 | MS.gene048678:CDS |
| GCACCAACTATGGTGGCTAA+TGG | 0.492096 | 3.4:+66539794 | MS.gene048678:CDS |
| TTTGAGGCAGCGGATTCAAA+AGG | 0.492900 | 3.4:+66539550 | MS.gene048678:CDS |
| GGAGGGTTGAAATGTTGAGC+AGG | 0.493102 | 3.4:+66539735 | MS.gene048678:CDS |
| CTACCTAAGATTGAAGAGAA+TGG | 0.512642 | 3.4:+66539818 | MS.gene048678:CDS |
| AGGTCAAGGTCAAACTCAAA+TGG | 0.513312 | 3.4:+66539766 | MS.gene048678:CDS |
| AGCACCCTTTGAACTCCTAA+AGG | 0.514637 | 3.4:-66539464 | None:intergenic |
| GTTGAAATGTTGAGCAGGAA+TGG | 0.522645 | 3.4:+66539740 | MS.gene048678:CDS |
| GGGGATCAGGCACCTCCTAT+GGG | 0.527561 | 3.4:+66539932 | MS.gene048678:CDS |
| AATCAACGACTCTGCGAGGA+AGG | 0.536639 | 3.4:+66539316 | MS.gene048678:CDS |
| AGTCCATTAGCCACCATAGT+TGG | 0.539716 | 3.4:-66539797 | None:intergenic |
| TTTGAAAGATATCAATAGGA+GGG | 0.549226 | 3.4:+66539718 | MS.gene048678:CDS |
| AACTTGATGAATAATGGTGG+TGG | 0.552012 | 3.4:+66539911 | MS.gene048678:CDS |
| AGCAGGAATGGTCAAGGTCA+AGG | 0.553703 | 3.4:+66539752 | MS.gene048678:CDS |
| GAGAATGGACAAGGGAGTCA+TGG | 0.556512 | 3.4:+66539833 | MS.gene048678:CDS |
| ACATTCAAGAAAAGGAAGAA+AGG | 0.560908 | 3.4:+66539341 | MS.gene048678:CDS |
| GACGGCCAAACCTCTGGTTG+AGG | 0.565198 | 3.4:-66539440 | None:intergenic |
| GGATTGACATTTCCCATAGG+AGG | 0.571905 | 3.4:-66539944 | None:intergenic |
| ATTTGGCCAAAACCCATTTG+GGG | 0.587386 | 3.4:-66539966 | None:intergenic |
| TTTGGCCAAAACCCATTTGG+GGG | 0.595235 | 3.4:-66539965 | None:intergenic |
| ATTTGAAAGATATCAATAGG+AGG | 0.602830 | 3.4:+66539717 | MS.gene048678:CDS |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | 3.4:+66539430 | MS.gene048678:CDS |
| GCATAACTGGATCAGCACTA+AGG | 0.605501 | 3.4:-66539643 | None:intergenic |
| AAGATTGAAGAGAATGGACA+AGG | 0.608283 | 3.4:+66539824 | MS.gene048678:CDS |
| ACTTGATGAATAATGGTGGT+GGG | 0.616834 | 3.4:+66539912 | MS.gene048678:CDS |
| ATGAACTTGATGAATAATGG+TGG | 0.624781 | 3.4:+66539908 | MS.gene048678:CDS |
| AGTGAACTCAGTACTCTATG+TGG | 0.630043 | 3.4:+66539380 | MS.gene048678:CDS |
| CTTGATGAATAATGGTGGTG+GGG | 0.636670 | 3.4:+66539913 | MS.gene048678:CDS |
| CTTTGAACTCCTAAAGGAGA+CGG | 0.641014 | 3.4:-66539458 | None:intergenic |
| AGTTATGCACAATATAAGCA+TGG | 0.643634 | 3.4:+66539658 | MS.gene048678:CDS |
| TTGATTTGAATGATATGGCA+TGG | 0.644556 | 3.4:+66539681 | MS.gene048678:CDS |
| ATGTTGAGCAGGAATGGTCA+AGG | 0.649347 | 3.4:+66539746 | MS.gene048678:CDS |
| GGTCGTAGCACCAACTATGG+TGG | 0.652064 | 3.4:+66539787 | MS.gene048678:CDS |
| TCATAATCAACGACTCTGCG+AGG | 0.671801 | 3.4:+66539312 | MS.gene048678:CDS |
| AGATTGAAGAGAATGGACAA+GGG | 0.691703 | 3.4:+66539825 | MS.gene048678:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTTGAAAGATATCAAT+AGG | + | chr3.4:66539714-66539733 | MS.gene048678:CDS | 20.0% |
| !! | TTTATGAACTTGATGAATAA+TGG | + | chr3.4:66539905-66539924 | MS.gene048678:CDS | 20.0% |
| ! | ATTTGAAAGATATCAATAGG+AGG | + | chr3.4:66539717-66539736 | MS.gene048678:CDS | 25.0% |
| ! | TCTATTATCCTTTCTTTGTT+TGG | - | chr3.4:66539591-66539610 | None:intergenic | 25.0% |
| ! | TTTGAAAGATATCAATAGGA+GGG | + | chr3.4:66539718-66539737 | MS.gene048678:CDS | 25.0% |
| ACATTCAAGAAAAGGAAGAA+AGG | + | chr3.4:66539341-66539360 | MS.gene048678:CDS | 30.0% | |
| AGTTATGCACAATATAAGCA+TGG | + | chr3.4:66539658-66539677 | MS.gene048678:CDS | 30.0% | |
| ATGAACTTGATGAATAATGG+TGG | + | chr3.4:66539908-66539927 | MS.gene048678:CDS | 30.0% | |
| ATGCTTATATTGTGCATAAC+TGG | - | chr3.4:66539659-66539678 | None:intergenic | 30.0% | |
| ATTGGAACAAAGCAAAAAGA+TGG | + | chr3.4:66539511-66539530 | MS.gene048678:CDS | 30.0% | |
| GAAGAAAGGTCTAATGAAAA+AGG | + | chr3.4:66539355-66539374 | MS.gene048678:CDS | 30.0% | |
| TCAATTGACCAAACAAAGAA+AGG | + | chr3.4:66539580-66539599 | MS.gene048678:CDS | 30.0% | |
| ! | TTGATTTGAATGATATGGCA+TGG | + | chr3.4:66539681-66539700 | MS.gene048678:CDS | 30.0% |
| !! | CATGGTTGATTTGAATGATA+TGG | + | chr3.4:66539676-66539695 | MS.gene048678:CDS | 30.0% |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | - | chr3.4:66539509-66539528 | None:intergenic | 30.0% |
| AACTTGATGAATAATGGTGG+TGG | + | chr3.4:66539911-66539930 | MS.gene048678:CDS | 35.0% | |
| AAGATTGAAGAGAATGGACA+AGG | + | chr3.4:66539824-66539843 | MS.gene048678:CDS | 35.0% | |
| ACTTGATGAATAATGGTGGT+GGG | + | chr3.4:66539912-66539931 | MS.gene048678:CDS | 35.0% | |
| AGATTGAAGAGAATGGACAA+GGG | + | chr3.4:66539825-66539844 | MS.gene048678:CDS | 35.0% | |
| CTACCTAAGATTGAAGAGAA+TGG | + | chr3.4:66539818-66539837 | MS.gene048678:CDS | 35.0% | |
| TGTCCATTCTCTTCAATCTT+AGG | - | chr3.4:66539824-66539843 | None:intergenic | 35.0% | |
| ! | GTTCCAATTCAGGCATTTTT+CGG | - | chr3.4:66539499-66539518 | None:intergenic | 35.0% |
| !! | ACATGTTTTGGACATGAACA+TGG | + | chr3.4:66539859-66539878 | MS.gene048678:CDS | 35.0% |
| !!! | TGAACCAAGAGAGTTTTTTG+AGG | + | chr3.4:66539534-66539553 | MS.gene048678:CDS | 35.0% |
| AGGTCAAGGTCAAACTCAAA+TGG | + | chr3.4:66539766-66539785 | MS.gene048678:CDS | 40.0% | |
| AGTGAACTCAGTACTCTATG+TGG | + | chr3.4:66539380-66539399 | MS.gene048678:CDS | 40.0% | |
| ATTTGGCCAAAACCCATTTG+GGG | - | chr3.4:66539969-66539988 | None:intergenic | 40.0% | |
| CTTTGAACTCCTAAAGGAGA+CGG | - | chr3.4:66539461-66539480 | None:intergenic | 40.0% | |
| GAAATGTCAATCCCCCAAAT+GGG | + | chr3.4:66539954-66539973 | MS.gene048678:CDS | 40.0% | |
| GATTTGGCCAAAACCCATTT+GGG | - | chr3.4:66539970-66539989 | None:intergenic | 40.0% | |
| GGAAGGCAACATTCAAGAAA+AGG | + | chr3.4:66539333-66539352 | MS.gene048678:CDS | 40.0% | |
| GTTCCGAAAAATGCCTGAAT+TGG | + | chr3.4:66539493-66539512 | MS.gene048678:CDS | 40.0% | |
| GTTGAAATGTTGAGCAGGAA+TGG | + | chr3.4:66539740-66539759 | MS.gene048678:CDS | 40.0% | |
| ! | CTTGATGAATAATGGTGGTG+GGG | + | chr3.4:66539913-66539932 | MS.gene048678:CDS | 40.0% |
| ! | GAGTCATGGTCAACATGTTT+TGG | + | chr3.4:66539847-66539866 | MS.gene048678:CDS | 40.0% |
| ! | GTCTCCTTTAGGAGTTCAAA+GGG | + | chr3.4:66539460-66539479 | MS.gene048678:CDS | 40.0% |
| !!! | AAGAGAGTTTTTTGAGGCAG+CGG | + | chr3.4:66539540-66539559 | MS.gene048678:CDS | 40.0% |
| AATGGTCGTAGCACCAACTA+TGG | + | chr3.4:66539784-66539803 | MS.gene048678:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | - | chr3.4:66539434-66539453 | None:intergenic | 45.0% | |
| AGCACCCTTTGAACTCCTAA+AGG | - | chr3.4:66539467-66539486 | None:intergenic | 45.0% | |
| AGTCCATTAGCCACCATAGT+TGG | - | chr3.4:66539800-66539819 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | + | chr3.4:66539435-66539454 | MS.gene048678:CDS | 45.0% | |
| ATGTTGAGCAGGAATGGTCA+AGG | + | chr3.4:66539746-66539765 | MS.gene048678:CDS | 45.0% | |
| GCATAACTGGATCAGCACTA+AGG | - | chr3.4:66539646-66539665 | None:intergenic | 45.0% | |
| GCTGCCTCAAAAAACTCTCT+TGG | - | chr3.4:66539541-66539560 | None:intergenic | 45.0% | |
| GGAAATGTCAATCCCCCAAA+TGG | + | chr3.4:66539953-66539972 | MS.gene048678:CDS | 45.0% | |
| GGATTGACATTTCCCATAGG+AGG | - | chr3.4:66539947-66539966 | None:intergenic | 45.0% | |
| GGATTTGGCCAAAACCCATT+TGG | - | chr3.4:66539971-66539990 | None:intergenic | 45.0% | |
| TCATAATCAACGACTCTGCG+AGG | + | chr3.4:66539312-66539331 | MS.gene048678:CDS | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | + | chr3.4:66539430-66539449 | MS.gene048678:CDS | 45.0% | |
| TTTGGCCAAAACCCATTTGG+GGG | - | chr3.4:66539968-66539987 | None:intergenic | 45.0% | |
| ! | CGTCTCCTTTAGGAGTTCAA+AGG | + | chr3.4:66539459-66539478 | MS.gene048678:CDS | 45.0% |
| ! | TTTGAGGCAGCGGATTCAAA+AGG | + | chr3.4:66539550-66539569 | MS.gene048678:CDS | 45.0% |
| !! | TCAATCCCCCAAATGGGTTT+TGG | + | chr3.4:66539960-66539979 | MS.gene048678:CDS | 45.0% |
| AATCAACGACTCTGCGAGGA+AGG | + | chr3.4:66539316-66539335 | MS.gene048678:CDS | 50.0% | |
| AGCAGGAATGGTCAAGGTCA+AGG | + | chr3.4:66539752-66539771 | MS.gene048678:CDS | 50.0% | |
| GAGAATGGACAAGGGAGTCA+TGG | + | chr3.4:66539833-66539852 | MS.gene048678:CDS | 50.0% | |
| GCACCAACTATGGTGGCTAA+TGG | + | chr3.4:66539794-66539813 | MS.gene048678:CDS | 50.0% | |
| GGAGGGTTGAAATGTTGAGC+AGG | + | chr3.4:66539735-66539754 | MS.gene048678:CDS | 50.0% | |
| GGGGGATTGACATTTCCCAT+AGG | - | chr3.4:66539950-66539969 | None:intergenic | 50.0% | |
| !! | GAATAATGGTGGTGGGGATC+AGG | + | chr3.4:66539919-66539938 | MS.gene048678:CDS | 50.0% |
| AAAGGAGACGGCCAAACCTC+TGG | - | chr3.4:66539449-66539468 | None:intergenic | 55.0% | |
| GAGGTTTGGCCGTCTCCTTT+AGG | + | chr3.4:66539449-66539468 | MS.gene048678:CDS | 55.0% | |
| GGTCGTAGCACCAACTATGG+TGG | + | chr3.4:66539787-66539806 | MS.gene048678:CDS | 55.0% | |
| GACGGCCAAACCTCTGGTTG+AGG | - | chr3.4:66539443-66539462 | None:intergenic | 60.0% | |
| GGGGATCAGGCACCTCCTAT+GGG | + | chr3.4:66539932-66539951 | MS.gene048678:CDS | 60.0% | |
| TGGGGATCAGGCACCTCCTA+TGG | + | chr3.4:66539931-66539950 | MS.gene048678:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66539284 | 66540003 | 66539284 | ID=MS.gene048678 |
| chr3.4 | mRNA | 66539284 | 66540003 | 66539284 | ID=MS.gene048678.t1;Parent=MS.gene048678 |
| chr3.4 | exon | 66539284 | 66540003 | 66539284 | ID=MS.gene048678.t1.exon1;Parent=MS.gene048678.t1 |
| chr3.4 | CDS | 66539284 | 66540003 | 66539284 | ID=cds.MS.gene048678.t1;Parent=MS.gene048678.t1 |
| Gene Sequence |
| Protein sequence |
