Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048774.t1 | KEH21040.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.10E-114 | 422.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048774.t1 | O04193 | 61.5 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 3.2e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048774.t1 | A0A072U5A9 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 8.0e-115 | 422.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048774.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048774.t1 | MTR_8g097300 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 6.53e-155 | 427 |
| MS.gene048774.t1 | MTR_3g070050 | 60.656 | 183 | 64 | 1 | 1 | 175 | 1 | 183 | 3.48e-76 | 228 |
| MS.gene048774.t1 | MTR_8g031490 | 59.538 | 173 | 68 | 1 | 1 | 171 | 1 | 173 | 1.07e-73 | 222 |
| MS.gene048774.t1 | MTR_7g076720 | 53.302 | 212 | 95 | 2 | 1 | 208 | 1 | 212 | 1.07e-72 | 219 |
| MS.gene048774.t1 | MTR_1g017950 | 55.367 | 177 | 67 | 4 | 1 | 167 | 1 | 175 | 2.13e-61 | 190 |
| MS.gene048774.t1 | MTR_4g106800 | 52.000 | 175 | 77 | 2 | 2 | 169 | 3 | 177 | 6.29e-61 | 188 |
| MS.gene048774.t1 | MTR_4g106800 | 50.704 | 71 | 35 | 0 | 93 | 163 | 2 | 72 | 4.23e-18 | 78.6 |
| MS.gene048774.t1 | MTR_3g070050 | 56.738 | 141 | 53 | 1 | 43 | 175 | 1 | 141 | 2.36e-51 | 163 |
| MS.gene048774.t1 | MTR_3g070050 | 42.424 | 66 | 38 | 0 | 3 | 68 | 61 | 126 | 2.88e-15 | 70.5 |
| MS.gene048774.t1 | MTR_3g070033 | 67.213 | 61 | 20 | 0 | 115 | 175 | 6 | 66 | 6.32e-25 | 93.2 |
| MS.gene048774.t1 | MTR_1g106100 | 51.471 | 68 | 33 | 0 | 92 | 159 | 57 | 124 | 2.89e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048774.t1 | AT3G61230 | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.67e-79 | 236 |
| MS.gene048774.t1 | AT3G61230 | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.32e-21 | 89.0 |
| MS.gene048774.t1 | AT2G45800 | 56.250 | 208 | 85 | 3 | 1 | 202 | 1 | 208 | 1.73e-77 | 232 |
| MS.gene048774.t1 | AT2G39900 | 61.538 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 4.06e-77 | 230 |
| MS.gene048774.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
| MS.gene048774.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
| MS.gene048774.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
| MS.gene048774.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
| MS.gene048774.t1 | AT1G01780 | 53.659 | 205 | 88 | 2 | 1 | 203 | 1 | 200 | 3.25e-74 | 223 |
| MS.gene048774.t1 | AT3G55770 | 48.927 | 233 | 79 | 2 | 1 | 193 | 1 | 233 | 5.39e-68 | 208 |
| MS.gene048774.t1 | AT1G10200 | 54.802 | 177 | 68 | 4 | 1 | 167 | 1 | 175 | 1.62e-61 | 190 |
| MS.gene048774.t1 | AT2G45800 | 54.217 | 166 | 70 | 3 | 43 | 202 | 12 | 177 | 3.58e-53 | 169 |
| MS.gene048774.t1 | AT2G45800 | 48.438 | 64 | 33 | 0 | 3 | 66 | 68 | 131 | 5.39e-15 | 70.9 |
| MS.gene048774.t1 | AT3G55770 | 53.906 | 128 | 53 | 1 | 1 | 122 | 1 | 128 | 4.17e-42 | 139 |
| MS.gene048774.t1 | AT3G55770 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.96e-23 | 91.3 |
| MS.gene048774.t1 | AT3G55770 | 54.098 | 122 | 50 | 1 | 1 | 116 | 1 | 122 | 4.02e-39 | 131 |
| MS.gene048774.t1 | AT3G55770 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.22e-23 | 91.3 |
| MS.gene048774.t1 | AT1G10200 | 51.145 | 131 | 54 | 3 | 46 | 167 | 4 | 133 | 1.31e-37 | 128 |
| MS.gene048774.t1 | AT1G10200 | 45.455 | 66 | 36 | 0 | 3 | 68 | 61 | 126 | 7.54e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | 4.3:+6377392 | MS.gene048774:CDS |
| ATTACCCGTCTGGGGTTTCT+TGG | 0.257758 | 4.3:-6376635 | None:intergenic |
| AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | 4.3:+6376924 | MS.gene048774:CDS |
| TTTACCACAAGTCATGCTTT+AGG | 0.384207 | 4.3:+6377339 | MS.gene048774:CDS |
| CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | 4.3:-6376009 | None:intergenic |
| ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | 4.3:-6376008 | None:intergenic |
| AAAGGATCTTATTACCCGTC+TGG | 0.436417 | 4.3:-6376645 | None:intergenic |
| TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | 4.3:-6377548 | None:intergenic |
| TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | 4.3:+6377440 | MS.gene048774:CDS |
| ACCCGTCTGGGGTTTCTTGG+AGG | 0.447284 | 4.3:-6376632 | None:intergenic |
| AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | 4.3:-6376917 | None:intergenic |
| GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | 4.3:-6376909 | None:intergenic |
| AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | 4.3:+6376776 | MS.gene048774:intron |
| AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | 4.3:+6376925 | MS.gene048774:CDS |
| TCAATAACCATGTCTTTCAC+TGG | 0.477166 | 4.3:+6375983 | None:intergenic |
| CAAGAAAACTGTATATCCAT+TGG | 0.479463 | 4.3:+6376971 | MS.gene048774:CDS |
| AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | 4.3:-6376918 | None:intergenic |
| AAGGATCTTATTACCCGTCT+GGG | 0.489662 | 4.3:-6376644 | None:intergenic |
| AACTGTATATCCATTGGAAA+AGG | 0.494668 | 4.3:+6376977 | MS.gene048774:CDS |
| TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | 4.3:-6377389 | None:intergenic |
| CTGGGGTTTCTTGGAGGCGA+AGG | 0.523891 | 4.3:-6376626 | None:intergenic |
| CTTAAACAACTGAGAAAAGT+GGG | 0.527258 | 4.3:-6377432 | None:intergenic |
| GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | 4.3:-6377396 | None:intergenic |
| GTTGATACGTTATCTGCTGA+TGG | 0.547689 | 4.3:+6376049 | MS.gene048774:CDS |
| AGAATACACACCAGTTCACT+AGG | 0.547764 | 4.3:-6376786 | None:intergenic |
| CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | 4.3:-6377433 | None:intergenic |
| TCATGCTTTAGGTGCACACA+TGG | 0.562402 | 4.3:+6377350 | MS.gene048774:CDS |
| TACACCTCTTGTGTAACAGC+AGG | 0.567186 | 4.3:-6377590 | None:intergenic |
| CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | 4.3:-6377388 | None:intergenic |
| TTGTGATAAAACTGTTCACT+TGG | 0.580761 | 4.3:+6376027 | MS.gene048774:CDS |
| GCCTCCAAGAAACCCCAGAC+GGG | 0.596184 | 4.3:+6376631 | MS.gene048774:CDS |
| TGATCCTGCTGTTACACAAG+AGG | 0.603788 | 4.3:+6377586 | MS.gene048774:CDS |
| AGACACAGAGACAGAGACAA+AGG | 0.606794 | 4.3:+6377556 | MS.gene048774:CDS |
| CGCCTCCAAGAAACCCCAGA+CGG | 0.608247 | 4.3:+6376630 | MS.gene048774:CDS |
| AGTAACTATCAATCAATCGA+AGG | 0.610154 | 4.3:+6376559 | MS.gene048774:CDS |
| TTCAGATGTAATCAATGCAA+TGG | 0.611041 | 4.3:+6376094 | MS.gene048774:CDS |
| CGTATGTATATACCGCGAGA+AGG | 0.635292 | 4.3:-6376117 | None:intergenic |
| TTATGACAGTTGACAGTGGA+AGG | 0.635630 | 4.3:+6377311 | MS.gene048774:intron |
| GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | 4.3:-6376916 | None:intergenic |
| AGGATCTTATTACCCGTCTG+GGG | 0.652203 | 4.3:-6376643 | None:intergenic |
| TGGAACCCAACAGAAATGCA+AGG | 0.666590 | 4.3:+6376003 | MS.gene048774:CDS |
| TGCTTTAGGTGCACACATGG+AGG | 0.676247 | 4.3:+6377353 | MS.gene048774:CDS |
| CTGTTTATGACAGTTGACAG+TGG | 0.680767 | 4.3:+6377307 | MS.gene048774:intron |
| TTAAACAACTGAGAAAAGTG+GGG | 0.688189 | 4.3:-6377431 | None:intergenic |
| TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | 4.3:-6375990 | None:intergenic |
| TCAATGCAATGGCCTTCTCG+CGG | 0.702963 | 4.3:+6376105 | MS.gene048774:CDS |
| TGCACCTAAAGCATGACTTG+TGG | 0.763367 | 4.3:-6377343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCCTATTATTATAATT+TGG | - | chr4.3:6376696-6376715 | None:intergenic | 10.0% |
| !! | AAGTATATAAAAAAAAAGAA+AGG | - | chr4.3:6376666-6376685 | None:intergenic | 10.0% |
| !! | ATATATATATATATCAAAGA+TGG | + | chr4.3:6376204-6376223 | MS.gene048774:intron | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | + | chr4.3:6376205-6376224 | MS.gene048774:intron | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | + | chr4.3:6376342-6376361 | MS.gene048774:intron | 10.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | - | chr4.3:6377092-6377111 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | + | chr4.3:6376516-6376535 | MS.gene048774:intron | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | + | chr4.3:6376688-6376707 | MS.gene048774:intron | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | - | chr4.3:6377093-6377112 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | - | chr4.3:6376475-6376494 | None:intergenic | 15.0% |
| !! | ATATATATAGAACATAAACG+AGG | - | chr4.3:6376192-6376211 | None:intergenic | 20.0% |
| !! | TATATATAGAACATAAACGA+GGG | - | chr4.3:6376191-6376210 | None:intergenic | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | + | chr4.3:6376257-6376276 | MS.gene048774:intron | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | + | chr4.3:6376256-6376275 | MS.gene048774:intron | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | - | chr4.3:6377036-6377055 | None:intergenic | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | + | chr4.3:6376989-6377008 | MS.gene048774:intron | 20.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | - | chr4.3:6376168-6376187 | None:intergenic | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | + | chr4.3:6377049-6377068 | MS.gene048774:intron | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | - | chr4.3:6376990-6377009 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | + | chr4.3:6376988-6377007 | MS.gene048774:intron | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | + | chr4.3:6376164-6376183 | MS.gene048774:intron | 25.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | + | chr4.3:6376137-6376156 | MS.gene048774:intron | 25.0% |
| AACTGTATATCCATTGGAAA+AGG | + | chr4.3:6376977-6376996 | MS.gene048774:CDS | 30.0% | |
| AGTAACTATCAATCAATCGA+AGG | + | chr4.3:6376559-6376578 | MS.gene048774:CDS | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | + | chr4.3:6376971-6376990 | MS.gene048774:CDS | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | - | chr4.3:6377435-6377454 | None:intergenic | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | + | chr4.3:6377234-6377253 | MS.gene048774:intron | 30.0% | |
| TATATATACTCCAACAATGC+TGG | + | chr4.3:6377105-6377124 | MS.gene048774:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | + | chr4.3:6376404-6376423 | MS.gene048774:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | - | chr4.3:6377434-6377453 | None:intergenic | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | + | chr4.3:6376094-6376113 | MS.gene048774:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | + | chr4.3:6376403-6376422 | MS.gene048774:intron | 30.0% | |
| TTGTGATAAAACTGTTCACT+TGG | + | chr4.3:6376027-6376046 | MS.gene048774:CDS | 30.0% | |
| TTTCATATGTTTACAGCCTA+GGG | + | chr4.3:6376893-6376912 | MS.gene048774:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | + | chr4.3:6376432-6376451 | MS.gene048774:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | - | chr4.3:6376458-6376477 | None:intergenic | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | + | chr4.3:6376759-6376778 | MS.gene048774:intron | 30.0% |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | + | chr4.3:6376708-6376727 | MS.gene048774:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | + | chr4.3:6376710-6376729 | MS.gene048774:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | + | chr4.3:6376709-6376728 | MS.gene048774:intron | 30.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | + | chr4.3:6376924-6376943 | MS.gene048774:CDS | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | + | chr4.3:6376925-6376944 | MS.gene048774:CDS | 35.0% | |
| ATGGGTCAAATTGCATCTAA+AGG | + | chr4.3:6376223-6376242 | MS.gene048774:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | - | chr4.3:6377436-6377455 | None:intergenic | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | + | chr4.3:6376892-6376911 | MS.gene048774:intron | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | - | chr4.3:6377166-6377185 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | + | chr4.3:6377165-6377184 | MS.gene048774:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | - | chr4.3:6377181-6377200 | None:intergenic | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | + | chr4.3:6376377-6376396 | MS.gene048774:intron | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | - | chr4.3:6377187-6377206 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | + | chr4.3:6377339-6377358 | MS.gene048774:CDS | 35.0% | |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | - | chr4.3:6376921-6376940 | None:intergenic | 35.0% |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | - | chr4.3:6376920-6376939 | None:intergenic | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | + | chr4.3:6377440-6377459 | MS.gene048774:CDS | 35.0% |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | + | chr4.3:6377433-6377452 | MS.gene048774:CDS | 35.0% |
| AAAGGATCTTATTACCCGTC+TGG | - | chr4.3:6376648-6376667 | None:intergenic | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | - | chr4.3:6376647-6376666 | None:intergenic | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | - | chr4.3:6377180-6377199 | None:intergenic | 40.0% | |
| ACAAGCCTTGCATTTCTGTT+GGG | - | chr4.3:6376011-6376030 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | - | chr4.3:6376789-6376808 | None:intergenic | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | + | chr4.3:6377307-6377326 | MS.gene048774:intron | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | + | chr4.3:6376049-6376068 | MS.gene048774:CDS | 40.0% | |
| TACTCCAACAATGCTGGATT+TGG | + | chr4.3:6377111-6377130 | MS.gene048774:intron | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | + | chr4.3:6377183-6377202 | MS.gene048774:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | + | chr4.3:6377311-6377330 | MS.gene048774:intron | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | - | chr4.3:6376919-6376938 | None:intergenic | 40.0% |
| AAAAGGGCCCACTGAAATCA+TGG | - | chr4.3:6377076-6377095 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | + | chr4.3:6377556-6377575 | MS.gene048774:CDS | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | - | chr4.3:6376646-6376665 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | + | chr4.3:6377065-6377084 | MS.gene048774:intron | 45.0% | |
| CAAGAGCAGCATAGGATGAA+GGG | - | chr4.3:6377391-6377410 | None:intergenic | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | - | chr4.3:6376012-6376031 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | - | chr4.3:6376120-6376139 | None:intergenic | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | - | chr4.3:6377399-6377418 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | - | chr4.3:6377118-6377137 | None:intergenic | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | - | chr4.3:6377593-6377612 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | - | chr4.3:6377392-6377411 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | + | chr4.3:6377392-6377411 | MS.gene048774:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | + | chr4.3:6377586-6377605 | MS.gene048774:CDS | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | - | chr4.3:6377346-6377365 | None:intergenic | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | + | chr4.3:6377066-6377085 | MS.gene048774:intron | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | + | chr4.3:6376003-6376022 | MS.gene048774:CDS | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | + | chr4.3:6377350-6377369 | MS.gene048774:CDS | 45.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | + | chr4.3:6376776-6376795 | MS.gene048774:intron | 50.0% | |
| TCAATGCAATGGCCTTCTCG+CGG | + | chr4.3:6376105-6376124 | MS.gene048774:CDS | 50.0% | |
| TCTGTCTCTGTGTCTGATGC+TGG | - | chr4.3:6377551-6377570 | None:intergenic | 50.0% | |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | - | chr4.3:6376638-6376657 | None:intergenic | 50.0% |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | + | chr4.3:6376600-6376619 | MS.gene048774:CDS | 50.0% |
| ! | TGCTTTAGGTGCACACATGG+AGG | + | chr4.3:6377353-6377372 | MS.gene048774:CDS | 50.0% |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | - | chr4.3:6376912-6376931 | None:intergenic | 55.0% |
| CGCCTCCAAGAAACCCCAGA+CGG | + | chr4.3:6376630-6376649 | MS.gene048774:CDS | 60.0% | |
| CTGGGGTTTCTTGGAGGCGA+AGG | - | chr4.3:6376629-6376648 | None:intergenic | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | + | chr4.3:6376631-6376650 | MS.gene048774:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | - | chr4.3:6376635-6376654 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 6375992 | 6377613 | 6375992 | ID=MS.gene048774 |
| chr4.3 | mRNA | 6375992 | 6377613 | 6375992 | ID=MS.gene048774.t1;Parent=MS.gene048774 |
| chr4.3 | exon | 6375992 | 6376126 | 6375992 | ID=MS.gene048774.t1.exon1;Parent=MS.gene048774.t1 |
| chr4.3 | CDS | 6375992 | 6376126 | 6375992 | ID=cds.MS.gene048774.t1;Parent=MS.gene048774.t1 |
| chr4.3 | exon | 6376556 | 6376652 | 6376556 | ID=MS.gene048774.t1.exon2;Parent=MS.gene048774.t1 |
| chr4.3 | CDS | 6376556 | 6376652 | 6376556 | ID=cds.MS.gene048774.t1;Parent=MS.gene048774.t1 |
| chr4.3 | exon | 6376778 | 6376797 | 6376778 | ID=MS.gene048774.t1.exon3;Parent=MS.gene048774.t1 |
| chr4.3 | CDS | 6376778 | 6376797 | 6376778 | ID=cds.MS.gene048774.t1;Parent=MS.gene048774.t1 |
| chr4.3 | exon | 6376909 | 6376998 | 6376909 | ID=MS.gene048774.t1.exon4;Parent=MS.gene048774.t1 |
| chr4.3 | CDS | 6376909 | 6376998 | 6376909 | ID=cds.MS.gene048774.t1;Parent=MS.gene048774.t1 |
| chr4.3 | exon | 6377320 | 6377613 | 6377320 | ID=MS.gene048774.t1.exon5;Parent=MS.gene048774.t1 |
| chr4.3 | CDS | 6377320 | 6377613 | 6377320 | ID=cds.MS.gene048774.t1;Parent=MS.gene048774.t1 |
| Gene Sequence |
| Protein sequence |
