Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048775.t1 | XP_013447014.1 | 99.4 | 154 | 1 | 0 | 46 | 199 | 1 | 154 | 1.20E-81 | 312.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048775.t1 | A0A072TV38 | 99.4 | 154 | 1 | 0 | 46 | 199 | 1 | 154 | 8.4e-82 | 312.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048775.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048775.t1 | MTR_8g097310 | 99.351 | 154 | 1 | 0 | 46 | 199 | 1 | 154 | 1.08e-112 | 318 |
| MS.gene048775.t1 | MTR_5g077740 | 39.286 | 196 | 96 | 3 | 4 | 199 | 15 | 187 | 1.81e-43 | 144 |
| MS.gene048775.t1 | MTR_7g102790 | 34.483 | 203 | 116 | 6 | 9 | 198 | 4 | 202 | 6.66e-29 | 107 |
| MS.gene048775.t1 | MTR_4g094680 | 39.456 | 147 | 78 | 4 | 10 | 149 | 20 | 162 | 2.33e-28 | 106 |
| MS.gene048775.t1 | MTR_1g062160 | 32.323 | 198 | 120 | 5 | 12 | 198 | 7 | 201 | 3.63e-27 | 102 |
| MS.gene048775.t1 | MTR_4g078170 | 30.303 | 198 | 123 | 6 | 12 | 198 | 15 | 208 | 4.16e-25 | 97.4 |
| MS.gene048775.t1 | MTR_4g116300 | 36.111 | 144 | 87 | 3 | 10 | 152 | 4 | 143 | 4.42e-25 | 98.2 |
| MS.gene048775.t1 | MTR_2g055210 | 31.771 | 192 | 112 | 7 | 3 | 181 | 94 | 279 | 1.64e-24 | 98.6 |
| MS.gene048775.t1 | MTR_5g007230 | 29.949 | 197 | 130 | 5 | 6 | 198 | 15 | 207 | 4.70e-24 | 94.7 |
| MS.gene048775.t1 | MTR_5g030130 | 31.343 | 201 | 119 | 6 | 12 | 198 | 35 | 230 | 1.43e-23 | 94.4 |
| MS.gene048775.t1 | MTR_2g036170 | 34.395 | 157 | 90 | 6 | 11 | 165 | 36 | 181 | 1.42e-22 | 91.7 |
| MS.gene048775.t1 | MTR_8g066820 | 30.000 | 200 | 123 | 7 | 12 | 198 | 33 | 228 | 4.82e-22 | 90.1 |
| MS.gene048775.t1 | MTR_8g105930 | 32.432 | 148 | 75 | 5 | 14 | 140 | 15 | 158 | 1.16e-18 | 81.3 |
| MS.gene048775.t1 | MTR_5g030130 | 34.351 | 131 | 80 | 4 | 12 | 140 | 35 | 161 | 1.93e-18 | 79.3 |
| MS.gene048775.t1 | MTR_2g084525 | 30.769 | 169 | 102 | 8 | 14 | 170 | 6 | 171 | 1.24e-14 | 70.5 |
| MS.gene048775.t1 | MTR_2g084510 | 28.216 | 241 | 115 | 10 | 14 | 199 | 5 | 242 | 2.70e-14 | 69.3 |
| MS.gene048775.t1 | MTR_1g032880 | 34.043 | 141 | 81 | 4 | 58 | 196 | 27 | 157 | 5.32e-14 | 67.0 |
| MS.gene048775.t1 | MTR_2g060500 | 29.787 | 141 | 77 | 6 | 14 | 139 | 12 | 145 | 3.67e-12 | 62.0 |
| MS.gene048775.t1 | MTR_2g060540 | 29.787 | 141 | 77 | 6 | 14 | 139 | 12 | 145 | 5.38e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048775.t1 | AT1G31040 | 32.900 | 231 | 106 | 8 | 11 | 198 | 18 | 242 | 7.46e-29 | 108 |
| MS.gene048775.t1 | AT2G27930 | 36.946 | 203 | 99 | 7 | 9 | 198 | 1 | 187 | 1.86e-28 | 105 |
| MS.gene048775.t1 | AT2G27930 | 36.946 | 203 | 99 | 7 | 9 | 198 | 1 | 187 | 1.86e-28 | 105 |
| MS.gene048775.t1 | AT2G01818 | 33.333 | 225 | 121 | 10 | 1 | 199 | 1 | 222 | 2.79e-28 | 105 |
| MS.gene048775.t1 | AT5G46710 | 33.019 | 212 | 103 | 6 | 12 | 198 | 12 | 209 | 2.20e-27 | 103 |
| MS.gene048775.t1 | AT5G46710 | 33.019 | 212 | 103 | 6 | 12 | 198 | 28 | 225 | 3.15e-27 | 103 |
| MS.gene048775.t1 | AT1G32700 | 31.905 | 210 | 127 | 6 | 1 | 198 | 1 | 206 | 1.81e-26 | 101 |
| MS.gene048775.t1 | AT2G12646 | 34.356 | 163 | 102 | 3 | 8 | 169 | 2 | 160 | 2.19e-26 | 102 |
| MS.gene048775.t1 | AT2G12646 | 34.356 | 163 | 102 | 3 | 8 | 169 | 2 | 160 | 2.19e-26 | 102 |
| MS.gene048775.t1 | AT2G12646 | 35.000 | 160 | 99 | 3 | 11 | 169 | 2 | 157 | 1.37e-25 | 99.8 |
| MS.gene048775.t1 | AT1G43000 | 32.407 | 216 | 117 | 8 | 8 | 198 | 12 | 223 | 4.57e-25 | 97.8 |
| MS.gene048775.t1 | AT1G43000 | 32.407 | 216 | 117 | 8 | 8 | 198 | 5 | 216 | 5.10e-25 | 97.4 |
| MS.gene048775.t1 | AT4G17900 | 32.143 | 196 | 121 | 5 | 12 | 198 | 20 | 212 | 8.03e-25 | 96.7 |
| MS.gene048775.t1 | AT4G17900 | 32.143 | 196 | 121 | 5 | 12 | 198 | 34 | 226 | 8.82e-25 | 97.1 |
| MS.gene048775.t1 | AT1G76590 | 33.143 | 175 | 103 | 6 | 8 | 180 | 14 | 176 | 1.17e-24 | 97.1 |
| MS.gene048775.t1 | AT3G60670 | 36.296 | 135 | 81 | 3 | 10 | 143 | 5 | 135 | 3.75e-24 | 95.9 |
| MS.gene048775.t1 | AT1G21000 | 28.511 | 235 | 116 | 9 | 12 | 198 | 16 | 246 | 2.42e-22 | 91.3 |
| MS.gene048775.t1 | AT1G21000 | 28.511 | 235 | 116 | 9 | 12 | 198 | 13 | 243 | 2.68e-22 | 90.9 |
| MS.gene048775.t1 | AT2G27930 | 38.462 | 143 | 74 | 5 | 9 | 140 | 1 | 140 | 1.36e-20 | 84.7 |
| MS.gene048775.t1 | AT2G27930 | 38.462 | 143 | 74 | 5 | 9 | 140 | 1 | 140 | 1.36e-20 | 84.7 |
| MS.gene048775.t1 | AT5G46710 | 36.641 | 131 | 78 | 4 | 12 | 140 | 28 | 155 | 3.31e-20 | 83.6 |
| MS.gene048775.t1 | AT1G32700 | 31.765 | 170 | 101 | 5 | 40 | 198 | 2 | 167 | 4.97e-19 | 80.9 |
| MS.gene048775.t1 | AT2G27930 | 33.793 | 145 | 70 | 4 | 65 | 198 | 61 | 190 | 1.39e-12 | 63.9 |
| MS.gene048775.t1 | AT2G27930 | 33.793 | 145 | 70 | 4 | 65 | 198 | 61 | 190 | 1.39e-12 | 63.9 |
| MS.gene048775.t1 | AT2G01818 | 33.121 | 157 | 80 | 7 | 66 | 199 | 4 | 158 | 9.14e-12 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTTCTTTGGGAAAA+AGG | 0.129448 | 4.3:+6374488 | MS.gene048775:CDS |
| GGGAACTTCTGGACCTTCTT+TGG | 0.210937 | 4.3:+6374480 | MS.gene048775:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | 4.3:+6374469 | MS.gene048775:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | 4.3:-6373213 | None:intergenic |
| GGAACTTCTGGACCTTCTTT+GGG | 0.337965 | 4.3:+6374481 | MS.gene048775:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.344627 | 4.3:-6374403 | None:intergenic |
| CACCAGATGATATACAATAT+TGG | 0.377985 | 4.3:-6373326 | None:intergenic |
| CTCTTCGGGACCTTCCATCC+AGG | 0.401860 | 4.3:+6374429 | MS.gene048775:CDS |
| TTGATGCTATCTCACTGAAT+TGG | 0.402058 | 4.3:-6374159 | None:intergenic |
| ACACCACTTGAGTCCTCTTC+GGG | 0.413177 | 4.3:+6374415 | MS.gene048775:CDS |
| AACACCACTTGAGTCCTCTT+CGG | 0.418793 | 4.3:+6374414 | MS.gene048775:CDS |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | 4.3:+6374447 | MS.gene048775:CDS |
| TAGTCATCACCTTGCAAGAA+AGG | 0.434907 | 4.3:-6374249 | None:intergenic |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | 4.3:-6374226 | None:intergenic |
| GTACTGTACAGATTGCAATA+TGG | 0.468846 | 4.3:+6373296 | MS.gene048775:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | 4.3:+6374110 | MS.gene048775:intron |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | 4.3:-6374447 | None:intergenic |
| CTACTGTGCCCTTTCTTGCA+AGG | 0.513621 | 4.3:+6374240 | MS.gene048775:CDS |
| TCTTCGGGACCTTCCATCCA+GGG | 0.514865 | 4.3:+6374430 | MS.gene048775:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | 4.3:-6374457 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | 4.3:+6373324 | MS.gene048775:CDS |
| TAAAAGAAGGGAGATCTATG+AGG | 0.542712 | 4.3:-6374526 | None:intergenic |
| AGTCATCACCTTGCAAGAAA+GGG | 0.543071 | 4.3:-6374248 | None:intergenic |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | 4.3:+6373259 | MS.gene048775:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | 4.3:-6374454 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | 4.3:-6374443 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | 4.3:+6373398 | MS.gene048775:CDS |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | 4.3:+6374117 | MS.gene048775:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | 4.3:+6374456 | MS.gene048775:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | 4.3:-6374439 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | 4.3:+6373374 | MS.gene048775:CDS |
| GCTATCTCACTGAATTGGCG+AGG | 0.635923 | 4.3:-6374154 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | 4.3:+6374459 | MS.gene048775:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | 4.3:-6374389 | None:intergenic |
| GGTCCCGAAGAGGACTCAAG+TGG | 0.687578 | 4.3:-6374418 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | 4.3:+6374460 | MS.gene048775:CDS |
| CTGGATGGAAGGTCCCGAAG+AGG | 0.694672 | 4.3:-6374428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATTTATTTGTGTT+TGG | + | chr4.3:6372881-6372900 | MS.gene048775:intron | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | - | chr4.3:6372966-6372985 | None:intergenic | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | - | chr4.3:6372965-6372984 | None:intergenic | 10.0% |
| !! | AATATATAGACATATTTACA+AGG | + | chr4.3:6373374-6373393 | MS.gene048775:CDS | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | - | chr4.3:6373362-6373381 | None:intergenic | 15.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | + | chr4.3:6372544-6372563 | MS.gene048775:intron | 15.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | + | chr4.3:6372288-6372307 | MS.gene048775:intron | 20.0% |
| !! | ACATAGTAAAAAAATTGGTT+CGG | - | chr4.3:6374066-6374085 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | - | chr4.3:6373980-6373999 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | - | chr4.3:6373028-6373047 | None:intergenic | 20.0% |
| !! | CAAACACATAGTAAAAAAAT+TGG | - | chr4.3:6374071-6374090 | None:intergenic | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | - | chr4.3:6373979-6373998 | None:intergenic | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | + | chr4.3:6373794-6373813 | MS.gene048775:intron | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | + | chr4.3:6373793-6373812 | MS.gene048775:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | + | chr4.3:6373870-6373889 | MS.gene048775:intron | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | - | chr4.3:6372600-6372619 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | - | chr4.3:6372670-6372689 | None:intergenic | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | + | chr4.3:6372381-6372400 | MS.gene048775:intron | 20.0% |
| !!! | CAATTTTTTTACTATGTGTT+TGG | + | chr4.3:6374069-6374088 | MS.gene048775:intron | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | + | chr4.3:6373231-6373250 | MS.gene048775:CDS | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | + | chr4.3:6372446-6372465 | MS.gene048775:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | + | chr4.3:6374345-6374364 | MS.gene048775:intron | 20.0% |
| ! | AACAATATTGCGAAGAAATA+TGG | - | chr4.3:6372512-6372531 | None:intergenic | 25.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | - | chr4.3:6372371-6372390 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | + | chr4.3:6373199-6373218 | MS.gene048775:CDS | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | - | chr4.3:6372580-6372599 | None:intergenic | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | - | chr4.3:6373899-6373918 | None:intergenic | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | - | chr4.3:6373359-6373378 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | - | chr4.3:6372666-6372685 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | + | chr4.3:6372849-6372868 | MS.gene048775:intron | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | + | chr4.3:6373802-6373821 | MS.gene048775:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | - | chr4.3:6373196-6373215 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | + | chr4.3:6372919-6372938 | MS.gene048775:intron | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | - | chr4.3:6373197-6373216 | None:intergenic | 25.0% |
| AAAGCATGATTGAAATAAGC+TGG | + | chr4.3:6372679-6372698 | MS.gene048775:intron | 30.0% | |
| CAATATAAACTTGACTGACA+TGG | + | chr4.3:6373151-6373170 | MS.gene048775:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | - | chr4.3:6373329-6373348 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | + | chr4.3:6372752-6372771 | MS.gene048775:intron | 30.0% | |
| TATACTTCCTCTGTGTTAAA+TGG | + | chr4.3:6372262-6372281 | MS.gene048775:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | + | chr4.3:6372834-6372853 | MS.gene048775:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | + | chr4.3:6373324-6373343 | MS.gene048775:CDS | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | - | chr4.3:6372745-6372764 | None:intergenic | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | + | chr4.3:6374499-6374518 | MS.gene048775:CDS | 30.0% | |
| TTTGGGAAAAAGGAAAAGAA+AGG | + | chr4.3:6374498-6374517 | MS.gene048775:CDS | 30.0% | |
| ! | AAAACGACTTTACTAGCTTA+AGG | + | chr4.3:6373664-6373683 | MS.gene048775:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | + | chr4.3:6373665-6373684 | MS.gene048775:intron | 30.0% |
| ! | TTTGGCTCACAATTAAATAC+TGG | + | chr4.3:6372899-6372918 | MS.gene048775:intron | 30.0% |
| !! | CTACTTTTCCTTCATATTGT+TGG | + | chr4.3:6373627-6373646 | MS.gene048775:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | + | chr4.3:6374086-6374105 | MS.gene048775:intron | 30.0% |
| AAGTTCAACAGGAAATCACT+TGG | + | chr4.3:6372763-6372782 | MS.gene048775:intron | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | - | chr4.3:6372727-6372746 | None:intergenic | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | + | chr4.3:6372771-6372790 | MS.gene048775:intron | 35.0% | |
| GAGAATCTCCAACAATATGA+AGG | - | chr4.3:6373638-6373657 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | - | chr4.3:6372726-6372745 | None:intergenic | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | + | chr4.3:6373296-6373315 | MS.gene048775:CDS | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | + | chr4.3:6372934-6372953 | MS.gene048775:intron | 35.0% | |
| GTTCTACTCATCAAATTCGT+AGG | + | chr4.3:6373259-6373278 | MS.gene048775:CDS | 35.0% | |
| TAAAAGAAGGGAGATCTATG+AGG | - | chr4.3:6374529-6374548 | None:intergenic | 35.0% | |
| TATTGCACCATTTAACACAG+AGG | - | chr4.3:6372272-6372291 | None:intergenic | 35.0% | |
| TTACAAAAGCAACAGGAAAG+TGG | + | chr4.3:6374117-6374136 | MS.gene048775:CDS | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | - | chr4.3:6374162-6374181 | None:intergenic | 35.0% | |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | - | chr4.3:6374496-6374515 | None:intergenic | 35.0% |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | - | chr4.3:6374197-6374216 | None:intergenic | 35.0% |
| ! | TTTTGTCCTTCACTAACCAT+GGG | - | chr4.3:6373854-6373873 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | - | chr4.3:6373855-6373874 | None:intergenic | 35.0% |
| !! | ACTGACATGGTTTAATTTGC+AGG | + | chr4.3:6373164-6373183 | MS.gene048775:intron | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | - | chr4.3:6373953-6373972 | None:intergenic | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | + | chr4.3:6373206-6373225 | MS.gene048775:CDS | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | - | chr4.3:6373954-6373973 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | - | chr4.3:6373952-6373971 | None:intergenic | 35.0% |
| !! | TTTTGATTGCTCAGAGATTC+AGG | + | chr4.3:6373428-6373447 | MS.gene048775:CDS | 35.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | - | chr4.3:6373216-6373235 | None:intergenic | 40.0% | |
| AAAGAGTCACATAGAGACCA+AGG | - | chr4.3:6372308-6372327 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | + | chr4.3:6372937-6372956 | MS.gene048775:intron | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | - | chr4.3:6374251-6374270 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | - | chr4.3:6374292-6374311 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | + | chr4.3:6374110-6374129 | MS.gene048775:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | - | chr4.3:6374229-6374248 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | - | chr4.3:6374252-6374271 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | - | chr4.3:6374303-6374322 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | + | chr4.3:6374378-6374397 | MS.gene048775:CDS | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | + | chr4.3:6373167-6373186 | MS.gene048775:intron | 40.0% |
| AACACCACTTGAGTCCTCTT+CGG | + | chr4.3:6374414-6374433 | MS.gene048775:CDS | 45.0% | |
| AGAAGAAGACAGAGCAGTAC+TGG | + | chr4.3:6373740-6373759 | MS.gene048775:intron | 45.0% | |
| AGTTGTCCCATGGTTAGTGA+AGG | + | chr4.3:6373845-6373864 | MS.gene048775:intron | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | + | chr4.3:6374481-6374500 | MS.gene048775:CDS | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | + | chr4.3:6374488-6374507 | MS.gene048775:CDS | 45.0% |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | + | chr4.3:6373398-6373417 | MS.gene048775:CDS | 45.0% |
| ! | TTTTGGATAGTCAGTACCCC+TGG | + | chr4.3:6373819-6373838 | MS.gene048775:intron | 45.0% |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | - | chr4.3:6374406-6374425 | None:intergenic | 45.0% |
| AACCATGGGACAACTTGTCC+AGG | - | chr4.3:6373840-6373859 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCTTC+GGG | + | chr4.3:6374415-6374434 | MS.gene048775:CDS | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | - | chr4.3:6373839-6373858 | None:intergenic | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | + | chr4.3:6374460-6374479 | MS.gene048775:CDS | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | + | chr4.3:6374240-6374259 | MS.gene048775:CDS | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | + | chr4.3:6374469-6374488 | MS.gene048775:CDS | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | - | chr4.3:6374392-6374411 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | - | chr4.3:6374157-6374176 | None:intergenic | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | + | chr4.3:6374480-6374499 | MS.gene048775:CDS | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | + | chr4.3:6374459-6374478 | MS.gene048775:CDS | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | + | chr4.3:6374456-6374475 | MS.gene048775:CDS | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | - | chr4.3:6374460-6374479 | None:intergenic | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | - | chr4.3:6374457-6374476 | None:intergenic | 50.0% | |
| CCATGGGACAACTTGTCCAG+GGG | - | chr4.3:6373838-6373857 | None:intergenic | 55.0% | |
| TCTTCGGGACCTTCCATCCA+GGG | + | chr4.3:6374430-6374449 | MS.gene048775:CDS | 55.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | - | chr4.3:6374446-6374465 | None:intergenic | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | + | chr4.3:6373835-6373854 | MS.gene048775:intron | 60.0% | |
| CTCTTCGGGACCTTCCATCC+AGG | + | chr4.3:6374429-6374448 | MS.gene048775:CDS | 60.0% | |
| CTGGATGGAAGGTCCCGAAG+AGG | - | chr4.3:6374431-6374450 | None:intergenic | 60.0% | |
| GGTCCCGAAGAGGACTCAAG+TGG | - | chr4.3:6374421-6374440 | None:intergenic | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | - | chr4.3:6374442-6374461 | None:intergenic | 60.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | + | chr4.3:6374447-6374466 | MS.gene048775:CDS | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | - | chr4.3:6374450-6374469 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 6372228 | 6374549 | 6372228 | ID=MS.gene048775 |
| chr4.3 | mRNA | 6372228 | 6374549 | 6372228 | ID=MS.gene048775.t1;Parent=MS.gene048775 |
| chr4.3 | exon | 6372228 | 6372236 | 6372228 | ID=MS.gene048775.t1.exon1;Parent=MS.gene048775.t1 |
| chr4.3 | CDS | 6372228 | 6372236 | 6372228 | ID=cds.MS.gene048775.t1;Parent=MS.gene048775.t1 |
| chr4.3 | exon | 6373189 | 6373449 | 6373189 | ID=MS.gene048775.t1.exon2;Parent=MS.gene048775.t1 |
| chr4.3 | CDS | 6373189 | 6373449 | 6373189 | ID=cds.MS.gene048775.t1;Parent=MS.gene048775.t1 |
| chr4.3 | exon | 6374115 | 6374261 | 6374115 | ID=MS.gene048775.t1.exon3;Parent=MS.gene048775.t1 |
| chr4.3 | CDS | 6374115 | 6374261 | 6374115 | ID=cds.MS.gene048775.t1;Parent=MS.gene048775.t1 |
| chr4.3 | exon | 6374367 | 6374549 | 6374367 | ID=MS.gene048775.t1.exon4;Parent=MS.gene048775.t1 |
| chr4.3 | CDS | 6374367 | 6374549 | 6374367 | ID=cds.MS.gene048775.t1;Parent=MS.gene048775.t1 |
| Gene Sequence |
| Protein sequence |
