AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048869

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048869.t1 MTR_8g098945 95.636 275 7 2 1 274 1 271 0.0 540
MS.gene048869.t1 MTR_7g079040 45.361 194 89 5 25 207 42 229 4.88e-42 147
MS.gene048869.t1 MTR_8g028565 44.809 183 84 4 49 219 70 247 2.66e-38 137
MS.gene048869.t1 MTR_1g099600 53.435 131 51 4 99 225 149 273 1.66e-36 132
MS.gene048869.t1 MTR_2g032030 50.000 140 51 4 89 212 215 351 2.59e-36 134
MS.gene048869.t1 MTR_2g032030 50.000 140 51 4 89 212 215 351 4.71e-36 134
MS.gene048869.t1 MTR_2g016770 56.566 99 40 1 101 196 1 99 2.43e-32 118
MS.gene048869.t1 MTR_2g016770 67.105 76 25 0 121 196 16 91 3.43e-32 118
MS.gene048869.t1 MTR_7g109600 50.000 114 50 2 91 197 5 118 1.63e-30 115
MS.gene048869.t1 MTR_2g083870 55.319 94 34 1 107 192 47 140 9.12e-28 107
MS.gene048869.t1 MTR_8g087000 58.904 73 30 0 133 205 78 150 1.51e-27 107
MS.gene048869.t1 MTR_8g087000 58.904 73 30 0 133 205 77 149 1.71e-27 106
MS.gene048869.t1 MTR_2g024350 54.795 73 32 1 133 204 9 81 6.69e-23 94.4
MS.gene048869.t1 MTR_8g067650 49.505 101 49 2 104 202 310 410 8.14e-23 97.8
MS.gene048869.t1 MTR_8g067635 49.505 101 49 2 104 202 320 420 9.84e-23 97.8
MS.gene048869.t1 MTR_8g069935 45.385 130 64 4 104 230 302 427 2.77e-22 95.9
MS.gene048869.t1 MTR_2g024380 41.322 121 67 3 87 203 203 323 3.88e-22 95.5
MS.gene048869.t1 MTR_4g127040 51.765 85 41 0 107 191 220 304 5.21e-22 93.6
MS.gene048869.t1 MTR_1g009613 50.602 83 36 2 111 189 238 319 2.26e-21 92.0
MS.gene048869.t1 MTR_4g094908 47.573 103 42 3 110 208 241 335 3.72e-21 91.7
MS.gene048869.t1 MTR_5g016610 51.807 83 35 2 111 189 175 256 5.13e-21 90.1
MS.gene048869.t1 MTR_4g094588 50.617 81 38 2 131 210 177 256 2.53e-20 89.4
MS.gene048869.t1 MTR_1g070455 54.930 71 28 1 123 189 280 350 4.48e-20 89.0
MS.gene048869.t1 MTR_1g086790 50.704 71 33 2 131 200 157 226 8.37e-20 87.8
MS.gene048869.t1 MTR_7g011820 46.875 96 47 3 104 197 381 474 1.28e-19 88.6
MS.gene048869.t1 MTR_7g011820 47.887 71 33 3 127 195 223 291 1.34e-12 67.8
MS.gene048869.t1 MTR_3g108960 48.193 83 38 2 113 191 292 373 2.82e-19 87.0
MS.gene048869.t1 MTR_0117s0040 48.649 74 34 1 120 189 58 131 1.79e-18 82.8
MS.gene048869.t1 MTR_4g082580 46.739 92 44 3 104 195 254 340 4.48e-18 83.6
MS.gene048869.t1 MTR_4g082580 43.939 66 36 1 127 192 140 204 4.18e-11 63.2
MS.gene048869.t1 MTR_5g091390 55.556 63 27 1 131 193 156 217 6.82e-18 82.0
MS.gene048869.t1 MTR_5g043880 41.053 95 55 1 95 189 87 180 7.33e-18 81.6
MS.gene048869.t1 MTR_5g042920 49.333 75 36 2 118 192 307 379 8.14e-18 82.8
MS.gene048869.t1 MTR_5g042920 45.833 72 35 3 127 196 146 215 2.38e-12 67.0
MS.gene048869.t1 MTR_5g067700 34.591 159 84 5 73 223 51 197 1.60e-17 79.7
MS.gene048869.t1 MTR_6g053200 53.968 63 29 0 133 195 331 393 1.65e-17 82.4
MS.gene048869.t1 MTR_3g056100 46.250 80 41 2 118 197 258 335 2.08e-17 82.0
MS.gene048869.t1 MTR_3g056100 44.444 72 36 3 126 195 93 162 9.32e-12 65.1
MS.gene048869.t1 MTR_3g056100 46.250 80 41 2 118 197 245 322 2.09e-17 81.6
MS.gene048869.t1 MTR_3g056100 44.444 72 36 3 126 195 93 162 9.83e-12 65.1
MS.gene048869.t1 MTR_3g056100 46.835 79 40 2 118 196 402 478 2.22e-17 82.0
MS.gene048869.t1 MTR_3g056100 44.444 72 36 3 126 195 237 306 9.83e-12 65.1
MS.gene048869.t1 MTR_3g056100 46.835 79 40 2 118 196 389 465 2.50e-17 82.0
MS.gene048869.t1 MTR_3g056100 44.444 72 36 3 126 195 237 306 1.09e-11 65.1
MS.gene048869.t1 MTR_5g094430 45.238 84 41 3 120 200 241 322 2.53e-17 81.6
MS.gene048869.t1 MTR_5g094430 47.887 71 32 4 133 201 89 156 8.17e-12 65.5
MS.gene048869.t1 MTR_5g094430 45.238 84 41 3 120 200 219 300 2.70e-17 81.3
MS.gene048869.t1 MTR_5g094430 47.887 71 32 4 133 201 67 134 9.09e-12 65.1
MS.gene048869.t1 MTR_7g109800 50.725 69 33 1 131 199 144 211 2.72e-17 80.1
MS.gene048869.t1 MTR_5g094430 45.238 84 41 3 120 200 353 434 3.54e-17 81.3
MS.gene048869.t1 MTR_5g094430 45.714 70 35 3 133 201 201 268 1.04e-11 65.1
MS.gene048869.t1 MTR_3g053330 35.514 107 63 1 102 202 215 321 5.29e-17 80.9
MS.gene048869.t1 MTR_7g100510 41.667 96 41 2 111 192 326 420 5.31e-17 80.5
MS.gene048869.t1 MTR_7g100510 36.301 146 64 7 133 274 190 310 1.76e-14 73.2
MS.gene048869.t1 MTR_7g062220 41.284 109 58 3 86 189 73 180 8.30e-17 79.3
MS.gene048869.t1 MTR_4g007060 44.444 81 41 1 133 213 129 205 1.87e-16 77.8
MS.gene048869.t1 MTR_4g007060 44.444 81 41 1 133 213 163 239 2.17e-16 77.8
MS.gene048869.t1 MTR_2g033820 48.571 70 34 2 131 199 202 270 2.54e-16 78.2
MS.gene048869.t1 MTR_4g094412 39.785 93 54 1 102 192 202 294 2.92e-16 78.6
MS.gene048869.t1 MTR_7g110720 44.444 72 40 0 131 202 215 286 3.08e-16 78.6
MS.gene048869.t1 MTR_4g094412 39.785 93 54 1 102 192 211 303 3.23e-16 78.6
MS.gene048869.t1 MTR_7g110720 44.444 72 40 0 131 202 188 259 3.35e-16 78.2
MS.gene048869.t1 MTR_3g009470 46.250 80 41 2 118 197 482 559 3.37e-16 78.6
MS.gene048869.t1 MTR_3g009470 48.780 82 36 5 124 202 271 349 2.08e-15 76.3
MS.gene048869.t1 MTR_2g105060 40.476 84 50 0 133 216 95 178 3.92e-16 76.3
MS.gene048869.t1 MTR_5g097490 45.570 79 42 1 120 198 240 317 4.82e-16 77.8
MS.gene048869.t1 MTR_2g105060 38.095 105 63 1 114 216 149 253 4.88e-16 77.0
MS.gene048869.t1 MTR_4g049760 40.964 83 49 0 120 202 278 360 5.97e-16 77.8
MS.gene048869.t1 MTR_4g049790 40.964 83 49 0 120 202 300 382 6.11e-16 77.8
MS.gene048869.t1 MTR_7g080020 46.753 77 40 1 120 196 481 556 1.21e-15 77.0
MS.gene048869.t1 MTR_7g080020 49.296 71 32 3 133 201 281 349 4.78e-14 72.4
MS.gene048869.t1 MTR_7g079010 50.769 65 31 1 126 190 135 198 1.37e-15 74.3
MS.gene048869.t1 MTR_3g009470 48.780 82 36 5 124 202 271 349 2.11e-15 76.3
MS.gene048869.t1 MTR_2g023930 48.387 62 32 0 131 192 304 365 2.26e-15 76.3
MS.gene048869.t1 MTR_7g071120 40.816 98 55 3 120 217 313 407 2.91e-15 75.5
MS.gene048869.t1 MTR_7g071120 38.144 97 56 3 133 227 167 261 8.45e-14 71.2
MS.gene048869.t1 MTR_2g045360 42.353 85 47 1 131 213 210 294 3.29e-15 75.5
MS.gene048869.t1 MTR_7g080000 48.649 74 34 3 130 201 232 303 3.32e-15 75.9
MS.gene048869.t1 MTR_7g080000 44.872 78 41 2 118 195 419 494 4.16e-15 75.5
MS.gene048869.t1 MTR_3g104750 41.860 86 49 1 105 190 77 161 3.71e-15 71.6
MS.gene048869.t1 MTR_4g122530 47.619 63 32 1 131 193 207 268 3.72e-15 75.1
MS.gene048869.t1 MTR_4g013260 44.872 78 41 2 118 195 323 398 4.59e-15 75.1
MS.gene048869.t1 MTR_4g013260 48.333 60 30 1 133 192 185 243 6.11e-13 68.9
MS.gene048869.t1 MTR_7g009730 42.466 73 42 0 130 202 217 289 7.68e-15 74.7
MS.gene048869.t1 MTR_3g090860 44.928 69 36 1 121 187 122 190 1.17e-14 73.2
MS.gene048869.t1 MTR_4g132430 48.333 60 31 0 133 192 262 321 1.51e-14 73.6
MS.gene048869.t1 MTR_4g132430 48.333 60 31 0 133 192 128 187 1.61e-14 72.8
MS.gene048869.t1 MTR_1g015140 35.135 111 67 2 85 191 51 160 1.65e-14 70.1
MS.gene048869.t1 MTR_1g013760 49.123 57 29 0 133 189 141 197 1.85e-14 72.0
MS.gene048869.t1 MTR_1g078260 42.000 100 48 4 115 205 230 328 1.93e-14 73.2
MS.gene048869.t1 MTR_3g031220 41.379 87 49 2 118 204 352 436 2.03e-14 73.2
MS.gene048869.t1 MTR_3g031220 47.761 67 31 3 133 197 199 263 2.00e-12 67.4
MS.gene048869.t1 MTR_3g106060 32.331 133 77 2 89 217 104 227 2.20e-14 72.0
MS.gene048869.t1 MTR_1g077780 49.206 63 31 1 131 193 61 122 2.57e-14 68.9
MS.gene048869.t1 MTR_7g028415 50.000 60 29 1 131 190 92 150 4.50e-14 68.9
MS.gene048869.t1 MTR_7g028710 50.000 60 29 1 131 190 92 150 4.50e-14 68.9
MS.gene048869.t1 MTR_5g074400 38.144 97 59 1 105 201 393 488 4.54e-14 72.4
MS.gene048869.t1 MTR_5g074400 48.333 60 29 2 133 192 244 301 1.93e-11 64.3
MS.gene048869.t1 MTR_8g027860 38.384 99 50 2 107 194 102 200 5.68e-14 71.2
MS.gene048869.t1 MTR_4g047580 43.056 72 41 0 131 202 280 351 8.96e-14 71.2
MS.gene048869.t1 MTR_3g095040 48.333 60 30 1 133 192 119 177 1.16e-13 68.6
MS.gene048869.t1 MTR_7g117200 43.243 74 36 2 128 195 114 187 1.31e-13 70.1
MS.gene048869.t1 MTR_6g086555 42.500 80 42 3 120 196 194 272 1.71e-13 70.1
MS.gene048869.t1 MTR_4g107970 46.032 63 34 0 130 192 176 238 1.90e-13 70.5
MS.gene048869.t1 MTR_4g107970 46.032 63 34 0 130 192 253 315 1.96e-13 70.5
MS.gene048869.t1 MTR_2g088000 45.161 62 34 0 131 192 348 409 4.33e-13 69.3
MS.gene048869.t1 MTR_7g109600 58.696 46 19 0 152 197 7 52 5.73e-13 66.6
MS.gene048869.t1 MTR_3g093830 39.506 81 41 2 109 187 110 184 6.42e-13 67.8
MS.gene048869.t1 MTR_8g099350 37.234 94 44 2 109 187 96 189 8.40e-13 67.8
MS.gene048869.t1 MTR_3g095080 45.588 68 35 2 122 189 135 200 8.66e-13 66.2
MS.gene048869.t1 MTR_3g095080 45.588 68 35 2 122 189 159 224 1.02e-12 66.6
MS.gene048869.t1 MTR_4g130900 44.286 70 36 2 129 196 356 424 1.18e-12 67.8
MS.gene048869.t1 MTR_8g092140 47.692 65 32 2 125 189 154 216 1.37e-12 66.2
MS.gene048869.t1 MTR_1g013790 33.051 118 72 2 96 206 58 175 1.38e-12 66.2
MS.gene048869.t1 MTR_8g096730 40.000 75 43 2 116 190 55 127 1.52e-12 64.3
MS.gene048869.t1 MTR_8g087000 46.296 54 29 0 152 205 35 88 1.85e-12 64.7
MS.gene048869.t1 MTR_3g031220 47.761 67 31 3 133 197 199 263 1.88e-12 67.0
MS.gene048869.t1 MTR_8g092010 46.667 60 31 1 133 192 109 167 2.72e-12 64.3
MS.gene048869.t1 MTR_8g007270 49.153 59 29 1 131 189 153 210 4.46e-12 64.7
MS.gene048869.t1 MTR_5g067680 52.632 57 25 1 133 187 203 259 8.56e-12 65.1
MS.gene048869.t1 MTR_7g073380 49.123 57 27 1 133 187 124 180 8.48e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048869.t1 AT4G23550 44.000 250 113 7 1 226 1 247 1.82e-45 155
MS.gene048869.t1 AT4G01250 41.546 207 100 6 9 204 4 200 6.38e-41 143
MS.gene048869.t1 AT5G52830 57.018 114 48 1 111 224 145 257 4.29e-38 137
MS.gene048869.t1 AT2G34830 76.471 68 16 0 133 200 225 292 1.73e-33 126
MS.gene048869.t1 AT2G34830 76.471 68 16 0 133 200 216 283 1.86e-33 126
MS.gene048869.t1 AT1G30650 73.529 68 18 0 133 200 218 285 6.92e-32 122
MS.gene048869.t1 AT5G45050 56.842 95 41 0 106 200 1154 1248 2.22e-31 123
MS.gene048869.t1 AT5G45050 56.842 95 41 0 106 200 1015 1109 2.26e-31 123
MS.gene048869.t1 AT5G45050 56.842 95 41 0 106 200 1126 1220 2.39e-31 123
MS.gene048869.t1 AT3G58710 40.625 160 84 3 110 258 40 199 6.35e-31 116
MS.gene048869.t1 AT3G58710 38.922 167 87 3 107 258 32 198 6.32e-30 114
MS.gene048869.t1 AT1G29280 67.123 73 19 1 133 205 75 142 2.14e-29 112
MS.gene048869.t1 AT5G45260 48.515 101 49 2 106 203 1181 1281 7.42e-24 101
MS.gene048869.t1 AT2G30590 47.475 99 47 2 98 191 274 372 4.91e-23 97.4
MS.gene048869.t1 AT4G31550 46.875 96 46 2 110 201 221 315 7.82e-23 95.9
MS.gene048869.t1 AT2G24570 51.136 88 38 2 110 193 218 304 1.07e-21 92.8
MS.gene048869.t1 AT4G31550 45.263 95 47 2 111 201 221 314 1.37e-21 92.8
MS.gene048869.t1 AT5G46350 53.750 80 33 3 125 202 177 254 5.08e-21 91.3
MS.gene048869.t1 AT2G23320 46.988 83 39 2 111 189 216 297 2.57e-20 89.0
MS.gene048869.t1 AT1G29860 45.455 88 44 2 131 218 135 218 4.91e-20 87.8
MS.gene048869.t1 AT4G24240 49.398 83 37 2 111 189 257 338 7.48e-20 88.2
MS.gene048869.t1 AT4G18170 58.730 63 25 1 131 193 171 232 1.72e-19 86.7
MS.gene048869.t1 AT2G04880 32.984 191 98 7 29 195 161 345 1.98e-19 87.8
MS.gene048869.t1 AT2G04880 46.377 69 30 3 133 201 112 173 4.35e-11 63.2
MS.gene048869.t1 AT1G68150 34.746 118 75 1 96 213 201 316 6.66e-19 85.9
MS.gene048869.t1 AT2G04880 42.202 109 51 3 97 195 263 369 8.56e-19 86.3
MS.gene048869.t1 AT2G04880 46.377 69 30 3 133 201 112 173 3.59e-11 63.5
MS.gene048869.t1 AT5G28650 38.333 120 63 4 77 189 204 319 1.12e-18 84.7
MS.gene048869.t1 AT3G04670 48.810 84 37 2 110 189 238 319 1.87e-18 84.0
MS.gene048869.t1 AT4G30935 37.984 129 70 5 116 241 316 437 2.78e-18 84.3
MS.gene048869.t1 AT2G03340 34.307 137 71 5 88 220 384 505 4.35e-18 84.0
MS.gene048869.t1 AT2G03340 34.167 120 68 3 88 207 215 323 2.75e-14 72.8
MS.gene048869.t1 AT2G37260 42.222 90 51 1 100 189 237 325 4.63e-18 83.2
MS.gene048869.t1 AT2G37260 43.662 71 38 2 123 193 76 144 9.82e-12 64.7
MS.gene048869.t1 AT2G37260 42.222 90 51 1 100 189 235 323 4.64e-18 83.2
MS.gene048869.t1 AT2G37260 43.662 71 38 2 123 193 74 142 9.47e-12 64.7
MS.gene048869.t1 AT2G37260 42.222 90 51 1 100 189 317 405 5.78e-18 83.6
MS.gene048869.t1 AT2G37260 46.970 66 33 2 128 193 161 224 8.19e-12 65.5
MS.gene048869.t1 AT5G49520 54.839 62 27 1 131 192 220 280 5.79e-18 83.2
MS.gene048869.t1 AT2G21900 42.222 90 49 2 106 193 81 169 1.91e-17 79.0
MS.gene048869.t1 AT1G13960 50.000 70 33 2 120 189 398 465 2.08e-17 82.0
MS.gene048869.t1 AT1G13960 37.624 101 55 4 102 196 195 293 2.83e-14 72.8
MS.gene048869.t1 AT1G13960 50.000 70 33 2 120 189 245 312 2.86e-17 80.9
MS.gene048869.t1 AT1G13960 49.315 73 33 3 127 197 71 141 3.99e-14 72.0
MS.gene048869.t1 AT1G80840 39.130 115 58 3 113 217 117 229 2.94e-17 80.1
MS.gene048869.t1 AT3G62340 40.206 97 53 2 114 206 96 191 7.15e-17 79.0
MS.gene048869.t1 AT4G04450 45.833 72 39 0 131 202 197 268 1.63e-16 79.3
MS.gene048869.t1 AT4G04450 45.833 72 39 0 131 202 291 362 1.81e-16 79.3
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 194 269 2.58e-16 78.6
MS.gene048869.t1 AT4G26640 40.000 100 48 5 103 197 8 100 1.07e-12 67.8
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 194 269 2.58e-16 78.6
MS.gene048869.t1 AT4G26640 40.000 100 48 5 103 197 8 100 1.07e-12 67.8
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 194 269 2.58e-16 78.6
MS.gene048869.t1 AT4G26640 40.000 100 48 5 103 197 8 100 1.07e-12 67.8
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 194 269 2.58e-16 78.6
MS.gene048869.t1 AT4G26640 40.000 100 48 5 103 197 8 100 1.07e-12 67.8
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 298 373 3.16e-16 78.6
MS.gene048869.t1 AT4G26640 34.127 126 67 5 74 197 93 204 4.98e-13 68.9
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 330 405 3.19e-16 78.6
MS.gene048869.t1 AT4G26640 34.127 126 67 5 74 197 125 236 5.21e-13 68.9
MS.gene048869.t1 AT4G26640 46.154 78 40 2 120 197 370 445 3.25e-16 78.6
MS.gene048869.t1 AT4G26640 34.127 126 67 5 74 197 165 276 5.17e-13 68.9
MS.gene048869.t1 AT5G07100 42.222 90 51 1 108 197 117 205 3.33e-16 75.9
MS.gene048869.t1 AT5G07100 40.789 76 42 2 124 197 16 90 1.70e-11 62.8
MS.gene048869.t1 AT5G07100 42.222 90 51 1 108 197 117 205 3.33e-16 75.9
MS.gene048869.t1 AT5G07100 40.789 76 42 2 124 197 16 90 1.70e-11 62.8
MS.gene048869.t1 AT5G07100 42.222 90 51 1 108 197 117 205 3.33e-16 75.9
MS.gene048869.t1 AT5G07100 40.789 76 42 2 124 197 16 90 1.70e-11 62.8
MS.gene048869.t1 AT5G07100 42.222 90 51 1 108 197 117 205 3.33e-16 75.9
MS.gene048869.t1 AT5G07100 40.789 76 42 2 124 197 16 90 1.70e-11 62.8
MS.gene048869.t1 AT2G30250 47.368 76 38 2 118 193 315 388 3.79e-16 77.8
MS.gene048869.t1 AT4G26440 40.206 97 57 1 101 197 341 436 3.85e-16 78.6
MS.gene048869.t1 AT4G26440 41.772 79 42 3 133 209 179 255 5.32e-13 68.9
MS.gene048869.t1 AT5G07100 43.182 88 49 1 108 195 210 296 4.79e-16 77.0
MS.gene048869.t1 AT5G07100 40.789 76 42 2 124 197 109 183 2.99e-11 63.2
MS.gene048869.t1 AT1G62300 48.387 62 32 0 131 192 311 372 5.02e-16 78.2
MS.gene048869.t1 AT1G69310 40.000 105 59 3 88 189 100 203 6.08e-16 76.3
MS.gene048869.t1 AT1G69310 40.000 105 59 3 88 189 100 203 6.08e-16 76.3
MS.gene048869.t1 AT1G69310 40.000 105 59 3 88 189 100 203 6.08e-16 76.3
MS.gene048869.t1 AT4G22070 48.387 62 32 0 131 192 296 357 6.42e-16 77.8
MS.gene048869.t1 AT4G22070 48.387 62 32 0 131 192 296 357 6.42e-16 77.8
MS.gene048869.t1 AT4G22070 48.387 62 32 0 131 192 296 357 6.42e-16 77.8
MS.gene048869.t1 AT4G22070 48.387 62 32 0 131 192 296 357 6.42e-16 77.8
MS.gene048869.t1 AT2G47260 40.625 96 54 3 97 192 141 233 1.07e-15 76.3
MS.gene048869.t1 AT2G38470 38.596 114 62 4 120 231 351 458 1.54e-15 76.6
MS.gene048869.t1 AT2G38470 48.333 60 29 2 133 192 185 242 1.45e-11 64.7
MS.gene048869.t1 AT5G56270 46.154 78 40 2 118 195 474 549 2.27e-15 76.3
MS.gene048869.t1 AT5G56270 45.588 68 33 3 133 198 274 339 4.56e-12 66.2
MS.gene048869.t1 AT1G64000 50.794 63 30 1 128 190 110 171 5.37e-15 72.0
MS.gene048869.t1 AT1G69810 38.636 88 53 1 116 202 187 274 5.46e-15 74.7
MS.gene048869.t1 AT4G01720 49.206 63 32 0 130 192 237 299 6.15e-15 74.7
MS.gene048869.t1 AT5G41570 40.964 83 48 1 108 190 74 155 6.75e-15 71.6
MS.gene048869.t1 AT1G69810 38.636 88 53 1 116 202 129 216 7.31e-15 73.9
MS.gene048869.t1 AT5G26170 50.847 59 28 1 131 189 112 169 9.63e-15 70.9
MS.gene048869.t1 AT5G15130 42.466 73 42 0 130 202 225 297 1.04e-14 74.3
MS.gene048869.t1 AT5G13080 50.000 60 29 1 131 190 66 124 1.04e-14 70.1
MS.gene048869.t1 AT5G15130 42.466 73 42 0 130 202 183 255 1.23e-14 73.9
MS.gene048869.t1 AT3G01080 45.333 75 39 2 118 192 331 403 1.44e-14 73.6
MS.gene048869.t1 AT3G01080 45.588 68 35 2 133 200 206 271 5.85e-13 68.9
MS.gene048869.t1 AT2G25000 46.032 63 34 0 130 192 101 163 1.53e-14 71.6
MS.gene048869.t1 AT2G25000 46.032 63 34 0 130 192 101 163 1.53e-14 71.6
MS.gene048869.t1 AT1G18860 47.619 63 33 0 130 192 237 299 1.69e-14 73.6
MS.gene048869.t1 AT3G01080 45.333 75 39 2 118 192 293 365 1.81e-14 73.2
MS.gene048869.t1 AT3G01080 45.588 68 35 2 133 200 168 233 6.83e-13 68.6
MS.gene048869.t1 AT2G25000 46.032 63 34 0 130 192 123 185 2.26e-14 71.2
MS.gene048869.t1 AT2G25000 46.032 63 34 0 130 192 144 206 3.00e-14 71.2
MS.gene048869.t1 AT2G46130 42.500 80 45 1 111 190 9 87 4.01e-14 67.4
MS.gene048869.t1 AT4G31800 44.444 63 35 0 130 192 109 171 5.40e-14 70.1
MS.gene048869.t1 AT3G56400 50.847 59 27 1 131 187 119 177 5.43e-14 70.9
MS.gene048869.t1 AT4G31800 44.444 63 35 0 130 192 174 236 5.81e-14 70.9
MS.gene048869.t1 AT1G55600 37.037 81 50 1 112 192 287 366 6.67e-14 71.6
MS.gene048869.t1 AT2G46400 39.450 109 57 4 109 208 77 185 1.93e-13 69.3
MS.gene048869.t1 AT3G01970 49.153 59 29 1 131 189 64 121 3.23e-13 66.2
MS.gene048869.t1 AT3G01080 45.588 68 35 2 133 200 206 271 5.11e-13 68.6
MS.gene048869.t1 AT5G43290 42.529 87 47 2 103 189 87 170 5.75e-13 67.8
MS.gene048869.t1 AT4G39410 38.776 98 52 3 98 189 184 279 6.19e-13 68.2
MS.gene048869.t1 AT4G23810 41.379 87 48 2 126 209 152 238 8.26e-13 67.8
MS.gene048869.t1 AT2G44745 49.153 59 29 1 131 189 144 201 1.94e-12 65.5
MS.gene048869.t1 AT2G40740 38.298 94 53 2 133 221 174 267 1.96e-12 66.6
MS.gene048869.t1 AT2G40740 38.298 94 53 2 133 221 183 276 2.10e-12 66.6
MS.gene048869.t1 AT1G66560 38.144 97 58 1 133 227 104 200 2.96e-12 65.5
MS.gene048869.t1 AT4G11070 45.312 64 33 1 126 187 103 166 3.13e-12 65.9
MS.gene048869.t1 AT4G11070 45.312 64 33 1 126 187 135 198 3.43e-12 65.9
MS.gene048869.t1 AT5G24110 40.217 92 47 3 102 187 81 170 4.44e-12 65.5
MS.gene048869.t1 AT2G40750 47.368 57 28 1 133 187 153 209 7.82e-12 65.1
MS.gene048869.t1 AT5G64810 45.763 59 31 1 131 189 109 166 1.17e-11 62.8
MS.gene048869.t1 AT5G01900 52.632 57 25 1 133 187 111 167 1.59e-11 63.5
MS.gene048869.t1 AT1G66550 48.387 62 28 2 130 187 104 165 3.43e-11 62.4
MS.gene048869.t1 AT1G66550 48.387 62 28 2 130 187 99 160 3.46e-11 62.4
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.08e-11 63.9
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.08e-11 63.9
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.54e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.67e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.82e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.82e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.82e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 4.85e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 5.03e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 396 461 5.29e-11 63.5
MS.gene048869.t1 AT4G12020 44.118 68 36 2 127 194 463 528 5.90e-11 63.2
MS.gene048869.t1 AT1G80590 50.877 57 26 1 133 187 86 142 7.31e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATGATGAGTTATTATT+TGG 0.129039 4.2:-5503111 MS.gene048869:CDS
TTGACTTGTTCAGGCTCTTT+AGG 0.150517 4.2:+5502970 None:intergenic
TTTGGATCCAAAAGTTTATT+TGG 0.173451 4.2:-5502390 MS.gene048869:CDS
GGATGAGCTTGCATTCTTAA+TGG 0.203867 4.2:-5503205 MS.gene048869:CDS
AAGTATGAAGCAACAAAATA+AGG 0.250850 4.2:-5502228 MS.gene048869:CDS
GATGAAAGTGGATAGAAATT+AGG 0.255054 4.2:+5503024 None:intergenic
TTAATTTCTTTGACTTGTTC+AGG 0.260130 4.2:+5502961 None:intergenic
GGATAAGGTGAACCCTTTAT+TGG 0.261455 4.2:+5502479 None:intergenic
TGACTTGTTCAGGCTCTTTA+GGG 0.272887 4.2:+5502971 None:intergenic
GCTCTTCAAATTCATGAATA+AGG 0.283800 4.2:+5503055 None:intergenic
GCATGGGCATGGCGTAAATA+TGG 0.330729 4.2:-5502509 MS.gene048869:CDS
TATGTAACCAAATAAACTTT+TGG 0.350399 4.2:+5502383 None:intergenic
AAAGAGCTAGAGGAACTTAT+TGG 0.359530 4.2:-5502128 MS.gene048869:CDS
ATTCTTAATGGATTGGGATT+TGG 0.363394 4.2:-5503193 MS.gene048869:CDS
AGTATGAAGCAACAAAATAA+GGG 0.388973 4.2:-5502227 MS.gene048869:CDS
ACAAGTGGAAAAGAATCATT+TGG 0.397015 4.2:-5502408 MS.gene048869:CDS
CTATAGTAGCTTCGTGGATA+AGG 0.400452 4.2:+5502464 None:intergenic
GCTTGCATTCTTAATGGATT+GGG 0.410458 4.2:-5503199 MS.gene048869:CDS
AGCTTGCATTCTTAATGGAT+TGG 0.412282 4.2:-5503200 MS.gene048869:CDS
CTCAATTATGTGATGATGGT+TGG 0.450519 4.2:-5502160 MS.gene048869:CDS
AGTTCCTCTAGCTCTTTGCT+TGG 0.460231 4.2:+5502134 None:intergenic
GCTAATGAATTTCTTCGAGT+TGG 0.462513 4.2:+5502335 None:intergenic
ACTCGAAGAAATTCATTAGC+TGG 0.478608 4.2:-5502332 MS.gene048869:CDS
CCAACCACTCAAGAAGATCT+TGG 0.481311 4.2:+5502189 None:intergenic
GAATTTCTTCGAGTTGGTTG+AGG 0.496581 4.2:+5502341 None:intergenic
TAGCAGTTCTAAAGGATGTT+CGG 0.497075 4.2:-5502438 MS.gene048869:CDS
GATCTTCTTGAGTGGTTGGA+TGG 0.515896 4.2:-5502185 MS.gene048869:CDS
CCAAGATCTTCTTGAGTGGT+TGG 0.520742 4.2:-5502189 MS.gene048869:CDS
TATAGATGTAGCAGTTCTAA+AGG 0.522420 4.2:-5502446 MS.gene048869:CDS
CTACATCTATAGTAGCTTCG+TGG 0.523670 4.2:+5502458 None:intergenic
TTTAGTGAAAATTGAAGATG+AGG 0.535441 4.2:-5502261 MS.gene048869:CDS
CTCTATGTGATGCATGGGCA+TGG 0.552413 4.2:-5502520 MS.gene048869:CDS
GGTGCTCAATTATGTGATGA+TGG 0.555369 4.2:-5502164 MS.gene048869:CDS
ATTCATTAGCTGGAAGCACT+AGG 0.572420 4.2:-5502322 MS.gene048869:CDS
ATGGTACTCTATGTGATGCA+TGG 0.587497 4.2:-5502526 MS.gene048869:CDS
TGGTACTCTATGTGATGCAT+GGG 0.594523 4.2:-5502525 MS.gene048869:CDS
GATTCCAAGCAAAGAGCTAG+AGG 0.602142 4.2:-5502138 MS.gene048869:CDS
AAAATGGTTTGAGATGAAAG+TGG 0.604698 4.2:+5503012 None:intergenic
ATGACCAAGATCTTCTTGAG+TGG 0.626463 4.2:-5502193 MS.gene048869:CDS
AAGAAAGTAACAGCAGTGGA+TGG 0.637681 4.2:-5502545 MS.gene048869:CDS
ATGTTCGGCGAAGAAACAAG+TGG 0.637909 4.2:-5502423 MS.gene048869:CDS
GTATGAAGCAACAAAATAAG+GGG 0.642510 4.2:-5502226 MS.gene048869:CDS
TGTGAAGAAAGTAACAGCAG+TGG 0.752611 4.2:-5502549 MS.gene048869:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAAAAAAAT+TGG + chr4.2:5502529-5502548 None:intergenic 0.0%
!! AAAAAAGATGAGAAAAATAA+GGG + chr4.2:5502174-5502193 None:intergenic 15.0%
!! AGAAAAGATTATATTACTAT+AGG + chr4.2:5502582-5502601 None:intergenic 15.0%
!!! TGTTTCAAATTTATTTTTTG+AGG - chr4.2:5502610-5502629 MS.gene048869:intron 15.0%
!! CAGTATCTAAGTTTAAAAAA+AGG - chr4.2:5502419-5502438 MS.gene048869:CDS 20.0%
!! GAAAAAAGATGAGAAAAATA+AGG + chr4.2:5502175-5502194 None:intergenic 20.0%
!!! ATTGTCTTTGTATTTTTGTT+TGG - chr4.2:5502550-5502569 MS.gene048869:CDS 20.0%
!!! GATTTAAGATTTTTATGTTG+TGG - chr4.2:5502502-5502521 MS.gene048869:CDS 20.0%
!!! TATGTAACCAAATAAACTTT+TGG + chr4.2:5502933-5502952 None:intergenic 20.0%
! AAGTATGAAGCAACAAAATA+AGG - chr4.2:5503085-5503104 MS.gene048869:CDS 25.0%
! AGTATGAAGCAACAAAATAA+GGG - chr4.2:5503086-5503105 MS.gene048869:CDS 25.0%
! ATATGGACAAAAACCAATAA+AGG - chr4.2:5502821-5502840 MS.gene048869:intron 25.0%
! CGTTATAATCATTTGCATAT+TGG - chr4.2:5502454-5502473 MS.gene048869:CDS 25.0%
! GATCATGATGAGTTATTATT+TGG - chr4.2:5502202-5502221 MS.gene048869:CDS 25.0%
! TATGGACAAAAACCAATAAA+GGG - chr4.2:5502822-5502841 MS.gene048869:intron 25.0%
! TTTAGTGAAAATTGAAGATG+AGG - chr4.2:5503052-5503071 MS.gene048869:CDS 25.0%
! TTTGGATCCAAAAGTTTATT+TGG - chr4.2:5502923-5502942 MS.gene048869:CDS 25.0%
!! CGGATATAGAATTTTCTATT+TGG - chr4.2:5502677-5502696 MS.gene048869:intron 25.0%
!! TCATCTTCAATTTTCACTAA+AGG + chr4.2:5503053-5503072 None:intergenic 25.0%
!! TTTTTAAACTTAGATACTGC+TGG + chr4.2:5502418-5502437 None:intergenic 25.0%
!!! TATTTTTTGAGGAAACCTAA+TGG - chr4.2:5502621-5502640 MS.gene048869:intron 25.0%
!!! TTAATTTCTTTGACTTGTTC+AGG + chr4.2:5502355-5502374 None:intergenic 25.0%
!!! TTAGTAGTTTTTGAGAATTC+TGG + chr4.2:5502235-5502254 None:intergenic 25.0%
ACAAGTGGAAAAGAATCATT+TGG - chr4.2:5502905-5502924 MS.gene048869:CDS 30.0%
AGAAAATTCTATATCCGCTT+AGG + chr4.2:5502674-5502693 None:intergenic 30.0%
GAAAATTCTATATCCGCTTA+GGG + chr4.2:5502673-5502692 None:intergenic 30.0%
GATGAAAGTGGATAGAAATT+AGG + chr4.2:5502292-5502311 None:intergenic 30.0%
GCTCTTCAAATTCATGAATA+AGG + chr4.2:5502261-5502280 None:intergenic 30.0%
GTATGAAGCAACAAAATAAG+GGG - chr4.2:5503087-5503106 MS.gene048869:CDS 30.0%
! AAAATGGTTTGAGATGAAAG+TGG + chr4.2:5502304-5502323 None:intergenic 30.0%
! AAGCTTTAATTAACCCTAAG+CGG - chr4.2:5502657-5502676 MS.gene048869:intron 30.0%
! TATAGATGTAGCAGTTCTAA+AGG - chr4.2:5502867-5502886 MS.gene048869:intron 30.0%
!! ATTCTTAATGGATTGGGATT+TGG - chr4.2:5502120-5502139 MS.gene048869:CDS 30.0%
!! GAAAAATAAGGGTTTGTTGT+TGG + chr4.2:5502163-5502182 None:intergenic 30.0%
AAAGAGCTAGAGGAACTTAT+TGG - chr4.2:5503185-5503204 MS.gene048869:CDS 35.0%
ACTCGAAGAAATTCATTAGC+TGG - chr4.2:5502981-5503000 MS.gene048869:CDS 35.0%
GCTAATGAATTTCTTCGAGT+TGG + chr4.2:5502981-5503000 None:intergenic 35.0%
TTGACTTACACTTGTCCATT+AGG + chr4.2:5502639-5502658 None:intergenic 35.0%
! AGCTTGCATTCTTAATGGAT+TGG - chr4.2:5502113-5502132 MS.gene048869:CDS 35.0%
!! CTCAATTATGTGATGATGGT+TGG - chr4.2:5503153-5503172 MS.gene048869:CDS 35.0%
!! GCTTGCATTCTTAATGGATT+GGG - chr4.2:5502114-5502133 MS.gene048869:CDS 35.0%
!! TAGCAGTTCTAAAGGATGTT+CGG - chr4.2:5502875-5502894 MS.gene048869:intron 35.0%
AAGAAAGTAACAGCAGTGGA+TGG - chr4.2:5502768-5502787 MS.gene048869:intron 40.0%
AGCGAGAGAGCTTGTAAAAA+TGG + chr4.2:5502320-5502339 None:intergenic 40.0%
ATGACCAAGATCTTCTTGAG+TGG - chr4.2:5503120-5503139 MS.gene048869:CDS 40.0%
ATGGTACTCTATGTGATGCA+TGG - chr4.2:5502787-5502806 MS.gene048869:intron 40.0%
CTACATCTATAGTAGCTTCG+TGG + chr4.2:5502858-5502877 None:intergenic 40.0%
CTATAGTAGCTTCGTGGATA+AGG + chr4.2:5502852-5502871 None:intergenic 40.0%
GGATAAGGTGAACCCTTTAT+TGG + chr4.2:5502837-5502856 None:intergenic 40.0%
GGATGAGCTTGCATTCTTAA+TGG - chr4.2:5502108-5502127 MS.gene048869:CDS 40.0%
GGTGCTCAATTATGTGATGA+TGG - chr4.2:5503149-5503168 MS.gene048869:CDS 40.0%
TGGTACTCTATGTGATGCAT+GGG - chr4.2:5502788-5502807 MS.gene048869:intron 40.0%
TGTGAAGAAAGTAACAGCAG+TGG - chr4.2:5502764-5502783 MS.gene048869:intron 40.0%
!! ATTCATTAGCTGGAAGCACT+AGG - chr4.2:5502991-5503010 MS.gene048869:CDS 40.0%
!! GAATTTCTTCGAGTTGGTTG+AGG + chr4.2:5502975-5502994 None:intergenic 40.0%
!! TGACTTGTTCAGGCTCTTTA+GGG + chr4.2:5502345-5502364 None:intergenic 40.0%
!! TTGACTTGTTCAGGCTCTTT+AGG + chr4.2:5502346-5502365 None:intergenic 40.0%
ATGTTCGGCGAAGAAACAAG+TGG - chr4.2:5502890-5502909 MS.gene048869:intron 45.0%
CCAACCACTCAAGAAGATCT+TGG + chr4.2:5503127-5503146 None:intergenic 45.0%
CCAAGATCTTCTTGAGTGGT+TGG - chr4.2:5503124-5503143 MS.gene048869:CDS 45.0%
GATCTTCTTGAGTGGTTGGA+TGG - chr4.2:5503128-5503147 MS.gene048869:CDS 45.0%
GATTCCAAGCAAAGAGCTAG+AGG - chr4.2:5503175-5503194 MS.gene048869:CDS 45.0%
!! AGTTCCTCTAGCTCTTTGCT+TGG + chr4.2:5503182-5503201 None:intergenic 45.0%
CTCTATGTGATGCATGGGCA+TGG - chr4.2:5502793-5502812 MS.gene048869:intron 50.0%
GCATGGGCATGGCGTAAATA+TGG - chr4.2:5502804-5502823 MS.gene048869:intron 50.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 5502106 5503229 5502106 ID=MS.gene048869
chr4.2 mRNA 5502106 5503229 5502106 ID=MS.gene048869.t1;Parent=MS.gene048869
chr4.2 exon 5502895 5503229 5502895 ID=MS.gene048869.t1.exon1;Parent=MS.gene048869.t1
chr4.2 CDS 5502895 5503229 5502895 ID=cds.MS.gene048869.t1;Parent=MS.gene048869.t1
chr4.2 exon 5502106 5502595 5502106 ID=MS.gene048869.t1.exon2;Parent=MS.gene048869.t1
chr4.2 CDS 5502106 5502595 5502106 ID=cds.MS.gene048869.t1;Parent=MS.gene048869.t1
Gene Sequence

>MS.gene048869

ATGGATGAGCTTGCATTCTTAATGGATTGGGATTTGGAAGCTATCAATGAAGTACCAACAACAAACCCTTATTTTTCTCATCTTTTTTCTGAACAAGATCATGATGAGTTATTATTTGGATGTTTTCCAGAATTCTCAAAAACTACTAATGTCCTTATTCATGAATTTGAAGAGCTTTGCAAACCTAATTTCTATCCACTTTCATCTCAAACCATTTTTACAAGCTCTCTCGCTATCCCTAAAGAGCCTGAACAAGTCAAAGAAATTAAAGCAGCAGACAAAGTAGCTTCTCATCAAGATCTGCAAGTTCCAGCAGTATCTAAGTTTAAAAAAAGGTATAAATACGATCGTTATAATCATTTGCATATTGGTCTAGTTAGAATTTAGAAATAATTAGATTTAAGATTTTTATGTTGTGGTCCAATTTTTTTATTTTTTATTTTAATTGTCTTTGTATTTTTGTTTGGAGTGCACCTATAGTAATATAATCTTTTCTTTATACTTTGTTTCAAATTTATTTTTTGAGGAAACCTAATGGACAAGTGTAAGTCAAGCTTTAATTAACCCTAAGCGGATATAGAATTTTCTATTTGGTGTAAATACTAAAAAGTGAATATATATGTTGTTTTTTCAGCAAGAAAAACAAGAACAAGAGTGTTGTGAAGAAAGTAACAGCAGTGGATGGTACTCTATGTGATGCATGGGCATGGCGTAAATATGGACAAAAACCAATAAAGGGTTCACCTTATCCACGAAGCTACTATAGATGTAGCAGTTCTAAAGGATGTTCGGCGAAGAAACAAGTGGAAAAGAATCATTTGGATCCAAAAGTTTATTTGGTTACATACACTGCAGAACACAATCATCCTCAACCAACTCGAAGAAATTCATTAGCTGGAAGCACTAGGAAGAACAATATCTTAGTTACACATTCTTCAAAGACACCTTTAGTGAAAATTGAAGATGAGGTAAATGTGACAAGTATGAAGCAACAAAATAAGGGGTTTGAGAAAGATGACCAAGATCTTCTTGAGTGGTTGGATGGTGCTCAATTATGTGATGATGGTTGGATTCCAAGCAAAGAGCTAGAGGAACTTATTGGACTTGAGAATAAGTGTCAATAA
Protein sequence

>MS.gene048869.t1

MDELAFLMDWDLEAINEVPTTNPYFSHLFSEQDHDELLFGCFPEFSKTTNVLIHEFEELCKPNFYPLSSQTIFTSSLAIPKEPEQVKEIKAADKVASHQDLQVPAVSKFKKSKKNKNKSVVKKVTAVDGTLCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSAKKQVEKNHLDPKVYLVTYTAEHNHPQPTRRNSLAGSTRKNNILVTHSSKTPLVKIEDEVNVTSMKQQNKGFEKDDQDLLEWLDGAQLCDDGWIPSKELEELIGLENKCQ