Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048942.t1 | XP_013447216.1 | 95.2 | 1278 | 48 | 4 | 1 | 1273 | 1 | 1270 | 0.00E+00 | 2354.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048942.t1 | Q8L7I1 | 38.2 | 1100 | 494 | 28 | 208 | 1267 | 20 | 973 | 4.1e-152 | 540.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048942.t1 | A0A072TWI2 | 95.2 | 1278 | 48 | 4 | 1 | 1273 | 1 | 1270 | 0.0e+00 | 2354.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048942.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048942.t1 | MTR_8g099585 | 95.149 | 1278 | 49 | 4 | 1 | 1273 | 1 | 1270 | 0.0 | 2436 |
| MS.gene048942.t1 | MTR_4g110090 | 33.514 | 185 | 89 | 10 | 35 | 210 | 34 | 193 | 1.12e-16 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048942.t1 | AT4G10930 | 49.212 | 571 | 249 | 13 | 476 | 1033 | 409 | 951 | 1.22e-145 | 472 |
| MS.gene048942.t1 | AT4G10930 | 46.789 | 327 | 129 | 7 | 1 | 300 | 1 | 309 | 2.07e-77 | 280 |
| MS.gene048942.t1 | AT4G10930 | 49.212 | 571 | 249 | 13 | 476 | 1033 | 414 | 956 | 1.22e-145 | 472 |
| MS.gene048942.t1 | AT4G10930 | 46.789 | 327 | 129 | 7 | 1 | 300 | 1 | 309 | 1.79e-77 | 280 |
| MS.gene048942.t1 | AT3G05670 | 30.811 | 185 | 104 | 7 | 7 | 184 | 382 | 549 | 2.06e-15 | 82.0 |
| MS.gene048942.t1 | AT3G05670 | 30.811 | 185 | 104 | 7 | 7 | 184 | 382 | 549 | 2.06e-15 | 82.0 |
| MS.gene048942.t1 | AT3G05670 | 30.811 | 185 | 104 | 7 | 7 | 184 | 382 | 549 | 2.06e-15 | 82.0 |
Find 272 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGAGCTCGCTCTGATTC+TGG | 0.072097 | 4.2:+4284335 | None:intergenic |
| TAATTTCCTTCCTTAGATTT+TGG | 0.133665 | 4.2:+4284702 | None:intergenic |
| AGGCCTCTCTCACTTGTTTC+TGG | 0.153394 | 4.2:+4287163 | None:intergenic |
| CATTCACTGTTAGTATTATC+TGG | 0.160173 | 4.2:+4287271 | None:intergenic |
| TTTATAAGTGGTTCTTTATC+AGG | 0.190528 | 4.2:+4282045 | None:intergenic |
| CTTTCACAGAATCAGATTTA+AGG | 0.198788 | 4.2:+4283988 | None:intergenic |
| CTTCGTGCATAGCGATTTAA+AGG | 0.212127 | 4.2:-4286984 | MS.gene048942:CDS |
| AAAATCTTCTCGAAGCCTTT+AGG | 0.231661 | 4.2:-4284625 | MS.gene048942:CDS |
| TGAAAGGTGATAAAAGAAAA+TGG | 0.240611 | 4.2:-4283971 | MS.gene048942:CDS |
| TAATTCGTAACAGGATAATT+TGG | 0.241541 | 4.2:-4290934 | MS.gene048942:intron |
| GGCCAGCCTTCCGTTTCTTC+TGG | 0.249709 | 4.2:-4282129 | MS.gene048942:CDS |
| GATATAATGAATATAGTTAA+AGG | 0.267083 | 4.2:-4284866 | MS.gene048942:CDS |
| CCTTCCAAAGGAAAGTCTTC+TGG | 0.270839 | 4.2:+4286636 | None:intergenic |
| TCATCGGTCCCGGATGTATT+AGG | 0.271710 | 4.2:+4281841 | None:intergenic |
| GCTTTGTATGTATTGACAAC+TGG | 0.277151 | 4.2:-4290600 | MS.gene048942:CDS |
| ATGCAAAATTGAATCTGATA+TGG | 0.280001 | 4.2:-4286879 | MS.gene048942:CDS |
| GGGTCTTCATCTTGGTTTAT+CGG | 0.282538 | 4.2:-4286858 | MS.gene048942:CDS |
| CTGGCCAATCTCTGCATTAA+TGG | 0.289046 | 4.2:+4282146 | None:intergenic |
| AGTCGCGTTCTTCTTCCTTA+TGG | 0.300027 | 4.2:+4281947 | None:intergenic |
| GCAAGTGTTGAAGAAGATTC+TGG | 0.303824 | 4.2:-4289020 | MS.gene048942:CDS |
| AAATCTTCTCGAAGCCTTTA+GGG | 0.304999 | 4.2:-4284624 | MS.gene048942:CDS |
| GCCTTTAGGGCTGCTATAAC+AGG | 0.315732 | 4.2:-4284611 | MS.gene048942:CDS |
| AACAGATGGCAATTCAATAA+AGG | 0.316631 | 4.2:-4287314 | MS.gene048942:CDS |
| TCAGAATTTGAAGATTTATA+CGG | 0.316787 | 4.2:-4282069 | MS.gene048942:CDS |
| CTTACCTGCCTCACGGATAC+TGG | 0.317028 | 4.2:+4283686 | None:intergenic |
| TCTGGAAAGAATTGGATTCT+TGG | 0.322471 | 4.2:+4284304 | None:intergenic |
| CGGGAGCTCGCTCTGATTCT+GGG | 0.327606 | 4.2:+4284336 | None:intergenic |
| GGGATTGTGAAATTGAGTTT+TGG | 0.333583 | 4.2:-4284445 | MS.gene048942:CDS |
| CATTAATGGTGGAATCCTTC+TGG | 0.335776 | 4.2:+4282160 | None:intergenic |
| GTCTCATATCAATTGGCAAT+TGG | 0.336882 | 4.2:+4283741 | None:intergenic |
| CCTACATCAAGGAGCATATC+AGG | 0.338678 | 4.2:-4281409 | MS.gene048942:CDS |
| CCTCACTAGTCCAAAATCTA+AGG | 0.343630 | 4.2:-4284712 | MS.gene048942:CDS |
| TGGATTCTTGGCCTGACATT+CGG | 0.351968 | 4.2:+4284316 | None:intergenic |
| TGATCAACTGAAACTCATTC+TGG | 0.363424 | 4.2:+4290548 | None:intergenic |
| CTTGCGATTCATGTGATCTA+TGG | 0.364336 | 4.2:-4288980 | MS.gene048942:intron |
| TGAAGCTTCAACCGATAGTT+CGG | 0.367125 | 4.2:+4285018 | None:intergenic |
| GACTTAGACAAAGCAGTAAA+TGG | 0.369446 | 4.2:-4281928 | MS.gene048942:CDS |
| TATTATCTGGGTTAAATTCC+AGG | 0.369880 | 4.2:+4287284 | None:intergenic |
| GATGCTGCAATCTCCTTTGT+TGG | 0.370503 | 4.2:+4284890 | None:intergenic |
| ATATACAATCTGGAAAGAAT+TGG | 0.372942 | 4.2:+4284296 | None:intergenic |
| GCATCAGTTTCTTCTTCAGC+TGG | 0.373052 | 4.2:-4284038 | MS.gene048942:CDS |
| GAATGCTAATTTCCTCATAA+AGG | 0.377921 | 4.2:-4281291 | MS.gene048942:CDS |
| CGTGAACCGAGTAGCTTTGA+TGG | 0.379852 | 4.2:-4286941 | MS.gene048942:CDS |
| GGATTCTTGGCCTGACATTC+GGG | 0.380821 | 4.2:+4284317 | None:intergenic |
| TTTCTGGAATCCATTTGTTT+CGG | 0.382216 | 4.2:+4287179 | None:intergenic |
| CTTTCTCACCTTCCTTTATG+AGG | 0.383794 | 4.2:+4281279 | None:intergenic |
| GGTTATTGACAGGGGAGTAT+TGG | 0.388180 | 4.2:-4290874 | MS.gene048942:CDS |
| TCTGATATGGGTCTTCATCT+TGG | 0.392960 | 4.2:-4286866 | MS.gene048942:CDS |
| TTTCTCAGATAAACAAACTT+TGG | 0.395771 | 4.2:+4284124 | None:intergenic |
| TCTTCAAATTCTGAATCAAC+TGG | 0.396421 | 4.2:+4282078 | None:intergenic |
| TACATATTTCATTGTTCTTG+TGG | 0.397541 | 4.2:+4282478 | None:intergenic |
| CATTTGACTAGCAGCTGCTC+TGG | 0.397549 | 4.2:+4284985 | None:intergenic |
| TCCACCATTAATGCAGAGAT+TGG | 0.398293 | 4.2:-4282150 | MS.gene048942:CDS |
| TGCACGAAGGATTTAGAAGT+TGG | 0.400122 | 4.2:+4286998 | None:intergenic |
| TTGTCATCAACAGATTGATT+TGG | 0.401400 | 4.2:+4284188 | None:intergenic |
| CAAATCCTCTATAAACTTTG+AGG | 0.403161 | 4.2:-4284663 | MS.gene048942:CDS |
| AGATTCCTTTGTGCCAACTT+TGG | 0.404039 | 4.2:+4284013 | None:intergenic |
| ACAGATGGCAATTCAATAAA+GGG | 0.406400 | 4.2:-4287313 | MS.gene048942:CDS |
| TTCAACTTTATTGCTCCCTA+TGG | 0.408089 | 4.2:+4290276 | None:intergenic |
| TTTGTAGGCAGTTACTTGCT+TGG | 0.409234 | 4.2:-4289075 | MS.gene048942:intron |
| GAAGAAAACAAATAATGCTT+TGG | 0.415132 | 4.2:-4282265 | MS.gene048942:CDS |
| AAAGTTGGCACAAAGGAATC+TGG | 0.416752 | 4.2:-4284011 | MS.gene048942:CDS |
| TTCAACGCTATTTGAACTGC+AGG | 0.418515 | 4.2:+4282540 | None:intergenic |
| AATGATTGTAATTCACCATC+TGG | 0.419965 | 4.2:+4282015 | None:intergenic |
| ATGTGGAATATGTATGGATA+TGG | 0.420646 | 4.2:-4290895 | MS.gene048942:CDS |
| AGTTGTGTCTGTGTTTATGT+TGG | 0.421385 | 4.2:+4282632 | None:intergenic |
| GAAGCTTCAACCGATAGTTC+GGG | 0.423173 | 4.2:+4285019 | None:intergenic |
| ACATATTTCATTGTTCTTGT+GGG | 0.424032 | 4.2:+4282479 | None:intergenic |
| TGTTTAGTCTGTTCCGAGAA+AGG | 0.424635 | 4.2:+4284233 | None:intergenic |
| TCTCATATCAATTGGCAATT+GGG | 0.425839 | 4.2:+4283742 | None:intergenic |
| GATTCCAGAAGACTTTCCTT+TGG | 0.426336 | 4.2:-4286640 | MS.gene048942:CDS |
| TTGTTCTTGTGGGGACTGCT+TGG | 0.427164 | 4.2:+4282489 | None:intergenic |
| CATCAACTTCAGGAGGCAAT+AGG | 0.428681 | 4.2:+4287143 | None:intergenic |
| TGTATCTGCTATATACAATC+TGG | 0.430477 | 4.2:+4284286 | None:intergenic |
| TGCACGCTTTCTTCTACCAT+TGG | 0.430540 | 4.2:+4284475 | None:intergenic |
| TCTTCAGCTGGTGCCAAAGT+TGG | 0.431339 | 4.2:-4284026 | MS.gene048942:CDS |
| TGTAATGAAAAGGAAGTGTC+AGG | 0.431539 | 4.2:-4282459 | MS.gene048942:CDS |
| ACTGCATCTCTGTGACAGTT+TGG | 0.432384 | 4.2:+4282183 | None:intergenic |
| GTCTGTGTCCATTGCTGATA+CGG | 0.433476 | 4.2:-4287233 | MS.gene048942:CDS |
| GGAAACATGTGGAATATGTA+TGG | 0.436547 | 4.2:-4290901 | MS.gene048942:CDS |
| CAGGATAATTTGGACGTTGA+AGG | 0.438552 | 4.2:-4290924 | MS.gene048942:CDS |
| CCCTGTTATAGCAGCCCTAA+AGG | 0.443432 | 4.2:+4284610 | None:intergenic |
| TTTGGATAGTGCAGACTGTA+AGG | 0.443762 | 4.2:-4282247 | MS.gene048942:CDS |
| TATTGCCTCCTGAAGTTGAT+GGG | 0.446085 | 4.2:-4287141 | MS.gene048942:CDS |
| GAAGAAAGCGTGCATGGGAT+AGG | 0.446500 | 4.2:-4284466 | MS.gene048942:CDS |
| TGCAAAATTGAATCTGATAT+GGG | 0.448382 | 4.2:-4286878 | MS.gene048942:CDS |
| CTATTGCCTCCTGAAGTTGA+TGG | 0.451632 | 4.2:-4287142 | MS.gene048942:CDS |
| ATGAAGAGAGTTTCTGATGA+TGG | 0.452594 | 4.2:-4284743 | MS.gene048942:CDS |
| TTGAAGATGGCTCATTCCTC+AGG | 0.453779 | 4.2:-4290258 | MS.gene048942:intron |
| AGCAAACCTCCTAATACATC+CGG | 0.453834 | 4.2:-4281850 | MS.gene048942:CDS |
| TTCTTTGCCTTCAGAGCTGA+AGG | 0.455017 | 4.2:+4284557 | None:intergenic |
| TTCTTGTGGGGACTGCTTGG+AGG | 0.456656 | 4.2:+4282492 | None:intergenic |
| CAAAATAATCCGTCAGCAAA+AGG | 0.457161 | 4.2:-4284212 | MS.gene048942:CDS |
| CAATGGTTGACCGAAACAAA+TGG | 0.457635 | 4.2:-4287189 | MS.gene048942:CDS |
| GTATGGATATGGTTATTGAC+AGG | 0.458801 | 4.2:-4290884 | MS.gene048942:CDS |
| TCATTGTTTGACTTCTGGGC+AGG | 0.459693 | 4.2:+4281784 | None:intergenic |
| AGGATAATTTGGACGTTGAA+GGG | 0.461659 | 4.2:-4290923 | MS.gene048942:CDS |
| GCAGTAAATGGTGCTGAAGT+AGG | 0.462919 | 4.2:-4281916 | MS.gene048942:CDS |
| GATTTAAAGGAAAGTGATAA+TGG | 0.463962 | 4.2:-4286971 | MS.gene048942:CDS |
| GTGTCCGACATTAACTTACA+TGG | 0.464150 | 4.2:+4287103 | None:intergenic |
| TTTAAAACATTCTCCAACAA+AGG | 0.466040 | 4.2:-4284903 | MS.gene048942:CDS |
| AGAGGATGTCAAACCTTTCT+CGG | 0.466789 | 4.2:-4284246 | MS.gene048942:CDS |
| AGAGCGAGCTCCCGAATGTC+AGG | 0.468530 | 4.2:-4284327 | MS.gene048942:CDS |
| GAACACAGCAAATGAAAGTC+AGG | 0.475761 | 4.2:-4283907 | MS.gene048942:CDS |
| CTTCATCTTGGTTTATCGGT+GGG | 0.477646 | 4.2:-4286854 | MS.gene048942:CDS |
| GAAAAGAAAGAAAACATGAC+TGG | 0.479402 | 4.2:-4284785 | MS.gene048942:CDS |
| AACACCGGTCTCATATCAAT+TGG | 0.480966 | 4.2:+4283734 | None:intergenic |
| GAGAGCTTCAAAACCTGAAA+AGG | 0.481141 | 4.2:-4284408 | MS.gene048942:CDS |
| TGAAACTCATTCTGGCAAAG+TGG | 0.481558 | 4.2:+4290556 | None:intergenic |
| ATATAATGAATATAGTTAAA+GGG | 0.482474 | 4.2:-4284865 | MS.gene048942:CDS |
| CATTGTTTGACTTCTGGGCA+GGG | 0.482806 | 4.2:+4281785 | None:intergenic |
| AACAGATCCCCATCAACTTC+AGG | 0.482991 | 4.2:+4287133 | None:intergenic |
| CAATGAAATATGTAATGAAA+AGG | 0.483896 | 4.2:-4282469 | MS.gene048942:CDS |
| GACAGCTGTGGTTGTCTCAA+TGG | 0.485598 | 4.2:-4287206 | MS.gene048942:CDS |
| ATTCACTGTTAGTATTATCT+GGG | 0.485781 | 4.2:+4287272 | None:intergenic |
| CCTCTTTCTACCAGCCACTC+TGG | 0.486616 | 4.2:+4286426 | None:intergenic |
| CCAGAAGACTTTCCTTTGGA+AGG | 0.487768 | 4.2:-4286636 | MS.gene048942:intron |
| GGTGAGCAAGAGGCACCTCC+TGG | 0.488201 | 4.2:+4282204 | None:intergenic |
| TGATAAAAGAAAATGGGCCT+TGG | 0.488612 | 4.2:-4283964 | MS.gene048942:CDS |
| GAAAGGTGATAAAAGAAAAT+GGG | 0.488760 | 4.2:-4283970 | MS.gene048942:CDS |
| ATGATGACTGGTCGATTGAC+GGG | 0.490445 | 4.2:-4289841 | MS.gene048942:CDS |
| GTCCAGAAGAAACGGAAGGC+TGG | 0.493839 | 4.2:+4282127 | None:intergenic |
| TGAAAATCAAGTAGTGAAGA+AGG | 0.495591 | 4.2:-4281764 | MS.gene048942:intron |
| TTGTCGTTGGCATCATCAAA+TGG | 0.495748 | 4.2:+4291088 | None:intergenic |
| GTTACTTGCTTGGATGGTGA+TGG | 0.499617 | 4.2:-4289065 | MS.gene048942:CDS |
| AATTCCAGTATCCGTGAGGC+AGG | 0.501209 | 4.2:-4283690 | MS.gene048942:intron |
| TCTAGTTCAAGTATATCATC+AGG | 0.502187 | 4.2:+4282435 | None:intergenic |
| CGAGAATAATGATTGCCATA+AGG | 0.502487 | 4.2:-4281962 | MS.gene048942:CDS |
| GATGGCTGCAAAATTCGAAA+TGG | 0.503330 | 4.2:-4289047 | MS.gene048942:CDS |
| AGATGCTATTAATATTGAAA+AGG | 0.504588 | 4.2:-4282739 | MS.gene048942:CDS |
| CAGTAAATGGTGCTGAAGTA+GGG | 0.505019 | 4.2:-4281915 | MS.gene048942:CDS |
| TAAAAGAAAATGGGCCTTGG+AGG | 0.505512 | 4.2:-4283961 | MS.gene048942:CDS |
| TTATAAGTGGTTCTTTATCA+GGG | 0.505721 | 4.2:+4282046 | None:intergenic |
| TCTTCAATAAGCGTTCCGTC+AGG | 0.505803 | 4.2:+4282814 | None:intergenic |
| CTTAATTGTACTTTACCAGC+TGG | 0.506554 | 4.2:+4284077 | None:intergenic |
| TAGGCAGTTACTTGCTTGGA+TGG | 0.508085 | 4.2:-4289071 | MS.gene048942:CDS |
| TTCTGATTGATCAGTTTGCA+CGG | 0.508147 | 4.2:+4282590 | None:intergenic |
| GATGATGACTGGTCGATTGA+CGG | 0.511297 | 4.2:-4289842 | MS.gene048942:CDS |
| CTTTGTATGTATTGACAACT+GGG | 0.512954 | 4.2:-4290599 | MS.gene048942:CDS |
| AGTATCAAATCCCACACAAA+AGG | 0.513757 | 4.2:+4288423 | None:intergenic |
| GTGAAGGTATATGATACCAT+AGG | 0.518587 | 4.2:-4290292 | MS.gene048942:intron |
| TCTTCATCTTGGTTTATCGG+TGG | 0.519376 | 4.2:-4286855 | MS.gene048942:CDS |
| TATTGGATTGCTGTCAGCAC+TGG | 0.521780 | 4.2:-4290857 | MS.gene048942:intron |
| AAGATTGTACGTGGTCCAGC+TGG | 0.523778 | 4.2:-4284092 | MS.gene048942:CDS |
| TTCAACCGATAGTTCGGGGT+TGG | 0.525228 | 4.2:+4285024 | None:intergenic |
| GCACGAAGGATTTAGAAGTT+GGG | 0.526215 | 4.2:+4286999 | None:intergenic |
| AATGGACACAGACACTATTC+CGG | 0.526465 | 4.2:+4287243 | None:intergenic |
| CAAGTCCCTTGGAAAGCTTA+CGG | 0.528945 | 4.2:+4284837 | None:intergenic |
| GTTATCCCCTTCAGCTCTGA+AGG | 0.529362 | 4.2:-4284564 | MS.gene048942:CDS |
| ATTGGACTCATCAAATAACT+TGG | 0.529746 | 4.2:+4286916 | None:intergenic |
| AAGAAAGCGTGCATGGGATA+GGG | 0.529759 | 4.2:-4284465 | MS.gene048942:CDS |
| GGAGGTTTGCTAGTGATGGT+AGG | 0.529923 | 4.2:+4281862 | None:intergenic |
| AAGAAAACATGACTGGGTTG+AGG | 0.531917 | 4.2:-4284778 | MS.gene048942:CDS |
| TGGTAGGAGTCCAGAAGAAA+CGG | 0.532812 | 4.2:+4282119 | None:intergenic |
| GATGACAGTGCCAGAGTGGC+TGG | 0.534895 | 4.2:-4286436 | MS.gene048942:CDS |
| GTTAGGGATCTTTGTAACAC+TGG | 0.536237 | 4.2:+4282344 | None:intergenic |
| AGTCTTCTGGAATCGAGCAC+GGG | 0.536505 | 4.2:+4286649 | None:intergenic |
| CCTGATATGCTCCTTGATGT+AGG | 0.537367 | 4.2:+4281409 | None:intergenic |
| AGTTCTTCTCCCTTCATGAT+CGG | 0.538187 | 4.2:+4287040 | None:intergenic |
| GAGGTTTGCTAGTGATGGTA+GGG | 0.539545 | 4.2:+4281863 | None:intergenic |
| CATATTTCATTGTTCTTGTG+GGG | 0.541455 | 4.2:+4282480 | None:intergenic |
| CCAGAGTGGCTGGTAGAAAG+AGG | 0.542880 | 4.2:-4286426 | MS.gene048942:CDS |
| CTTAAATCTGATTCTGTGAA+AGG | 0.542950 | 4.2:-4283987 | MS.gene048942:CDS |
| ATTAGGAGGTTTGCTAGTGA+TGG | 0.546641 | 4.2:+4281858 | None:intergenic |
| AGAGGAAGTTACATTGTCGT+TGG | 0.546781 | 4.2:+4291075 | None:intergenic |
| ATGGTAGAAGAAAGCGTGCA+TGG | 0.547779 | 4.2:-4284472 | MS.gene048942:CDS |
| AGAAAACATGACTGGGTTGA+GGG | 0.548051 | 4.2:-4284777 | MS.gene048942:CDS |
| GAAACTCATTCTGGCAAAGT+GGG | 0.548840 | 4.2:+4290557 | None:intergenic |
| ATTATCTGGGTTAAATTCCA+GGG | 0.551587 | 4.2:+4287285 | None:intergenic |
| TGATCACGGCTGAACAGTAC+AGG | 0.553038 | 4.2:-4281367 | MS.gene048942:CDS |
| TGCTATTAATATTGAAAAGG+AGG | 0.553296 | 4.2:-4282736 | MS.gene048942:CDS |
| GGGAGCAATAAAGTTGAAGA+TGG | 0.554268 | 4.2:-4290271 | MS.gene048942:CDS |
| TCTGCAGTTCTACGAATGAT+TGG | 0.555363 | 4.2:+4282780 | None:intergenic |
| GCTAATTTCCTCATAAAGGA+AGG | 0.555452 | 4.2:-4281287 | MS.gene048942:CDS |
| ACTAGAATCTCATCCCGAGC+TGG | 0.555715 | 4.2:-4282418 | MS.gene048942:CDS |
| CTTTGCCTTCAGAGCTGAAG+GGG | 0.557451 | 4.2:+4284559 | None:intergenic |
| TCTGAAAACAATGAAGTGCC+AGG | 0.557715 | 4.2:-4282222 | MS.gene048942:CDS |
| CGATGAAAATATTCGAAGGA+AGG | 0.557810 | 4.2:-4281824 | MS.gene048942:CDS |
| AGATGCCAACCCCGAACTAT+CGG | 0.558854 | 4.2:-4285029 | MS.gene048942:CDS |
| GGATAATTTGGACGTTGAAG+GGG | 0.562397 | 4.2:-4290922 | MS.gene048942:CDS |
| GGACACAAATAATCAGCTGC+AGG | 0.564443 | 4.2:-4287086 | MS.gene048942:CDS |
| GATAAATTACGTACAAGCAA+AGG | 0.571388 | 4.2:+4283855 | None:intergenic |
| TTGGATAGTGCAGACTGTAA+GGG | 0.571843 | 4.2:-4282246 | MS.gene048942:CDS |
| TCAATAAGCGTTCCGTCAGG+CGG | 0.572262 | 4.2:+4282817 | None:intergenic |
| AACTGTGTCACCGATCATGA+AGG | 0.573404 | 4.2:-4287050 | MS.gene048942:CDS |
| AAGTCTTCTGGAATCGAGCA+CGG | 0.575721 | 4.2:+4286648 | None:intergenic |
| TCTGTGTCCATTGCTGATAC+GGG | 0.582687 | 4.2:-4287232 | MS.gene048942:CDS |
| ATCAGGCCATTGTGCAAGAG+TGG | 0.583842 | 4.2:-4281392 | MS.gene048942:CDS |
| TGAAGGTATATGATACCATA+GGG | 0.583986 | 4.2:-4290291 | MS.gene048942:intron |
| GGTTTGACATCCTCTTTCCG+TGG | 0.585428 | 4.2:+4284254 | None:intergenic |
| ACTAGTCCAAAATCTAAGGA+AGG | 0.586333 | 4.2:-4284708 | MS.gene048942:CDS |
| TCTGATTGATCAGTTTGCAC+GGG | 0.587189 | 4.2:+4282591 | None:intergenic |
| TTGGAAGATGATGATTACAT+AGG | 0.587979 | 4.2:-4282369 | MS.gene048942:CDS |
| TCGGTCCCGGATGTATTAGG+AGG | 0.590138 | 4.2:+4281844 | None:intergenic |
| TCTGGACTCCTACCATGTGA+AGG | 0.590540 | 4.2:-4282111 | MS.gene048942:CDS |
| GCAGTTTCTAAAGAAACAGA+TGG | 0.591651 | 4.2:-4287328 | MS.gene048942:CDS |
| GTTTGACATCCTCTTTCCGT+GGG | 0.592195 | 4.2:+4284255 | None:intergenic |
| TCACAGAGATGCAGTCCAGA+AGG | 0.593323 | 4.2:-4282175 | MS.gene048942:CDS |
| TGATATGCTGACACTCTCAC+AGG | 0.594250 | 4.2:-4291113 | MS.gene048942:CDS |
| TATGGATATGGTTATTGACA+GGG | 0.594947 | 4.2:-4290883 | MS.gene048942:CDS |
| GCAAGTTCGTATAAAAGTTG+AGG | 0.595408 | 4.2:-4285056 | MS.gene048942:CDS |
| GTGACAGTTTGGTGAGCAAG+AGG | 0.595565 | 4.2:+4282194 | None:intergenic |
| GCCAATCTCTGCATTAATGG+TGG | 0.596293 | 4.2:+4282149 | None:intergenic |
| ATTAGTGTCAGCAAGTCCCT+TGG | 0.597733 | 4.2:+4284826 | None:intergenic |
| ATTGCCTCCTGAAGTTGATG+GGG | 0.598756 | 4.2:-4287140 | MS.gene048942:CDS |
| GACGTTGAAGGGGAAACATG+TGG | 0.600689 | 4.2:-4290912 | MS.gene048942:CDS |
| GACGAACCGTAAGCTTTCCA+AGG | 0.600753 | 4.2:-4284843 | MS.gene048942:CDS |
| TGTCTCTCCCGTATCAGCAA+TGG | 0.601856 | 4.2:+4287225 | None:intergenic |
| AAGAAGTCAATGTTGCAGAA+AGG | 0.602008 | 4.2:-4284539 | MS.gene048942:CDS |
| ACAGTACGTGGTTATGCCCA+AGG | 0.604432 | 4.2:-4288387 | MS.gene048942:intron |
| ACTAACAGTGAATGTCATGC+CGG | 0.606011 | 4.2:-4287262 | MS.gene048942:CDS |
| TGGATAGTGCAGACTGTAAG+GGG | 0.606342 | 4.2:-4282245 | MS.gene048942:CDS |
| AATTAAGCAGTCACTCAGGA+GGG | 0.606780 | 4.2:-4284061 | MS.gene048942:CDS |
| ATTACAATCATTACATGGAG+AGG | 0.607432 | 4.2:-4282004 | MS.gene048942:CDS |
| CAACAGCACCTTCACATGGT+AGG | 0.607744 | 4.2:+4282103 | None:intergenic |
| AATTGATATGAGACCGGTGT+TGG | 0.608057 | 4.2:-4283732 | MS.gene048942:CDS |
| TTACAATCATTACATGGAGA+GGG | 0.608719 | 4.2:-4282003 | MS.gene048942:CDS |
| TAGAACTGCAGACACAGAGT+TGG | 0.609167 | 4.2:-4282769 | MS.gene048942:CDS |
| TGGCGACAAGGTGCCAACAC+CGG | 0.609390 | 4.2:+4283719 | None:intergenic |
| TGTACTTCTAGTCGATAATG+TGG | 0.609798 | 4.2:-4286706 | MS.gene048942:intron |
| TGGTAGAAGAAAGCGTGCAT+GGG | 0.610649 | 4.2:-4284471 | MS.gene048942:CDS |
| TCTTTGCCTTCAGAGCTGAA+GGG | 0.611101 | 4.2:+4284558 | None:intergenic |
| ATTGCCAATTGATATGAGAC+CGG | 0.612910 | 4.2:-4283738 | MS.gene048942:CDS |
| CAATTAAGCAGTCACTCAGG+AGG | 0.619637 | 4.2:-4284062 | MS.gene048942:CDS |
| TTGGTTCCATCAAAGCTACT+CGG | 0.620668 | 4.2:+4286935 | None:intergenic |
| CTTTAAATCGCTATGCACGA+AGG | 0.621604 | 4.2:+4286985 | None:intergenic |
| GTACAATTAAGCAGTCACTC+AGG | 0.623035 | 4.2:-4284065 | MS.gene048942:CDS |
| GTGCAAGAGTGGTGTGATCA+CGG | 0.623081 | 4.2:-4281381 | MS.gene048942:CDS |
| TCAACGCTATTTGAACTGCA+GGG | 0.626482 | 4.2:+4282541 | None:intergenic |
| TGGTGCCAAAGTTGGCACAA+AGG | 0.626604 | 4.2:-4284018 | MS.gene048942:CDS |
| GACACAGCTGTACCGCCTGA+CGG | 0.626722 | 4.2:-4282829 | MS.gene048942:CDS |
| ATTAAGCAGTCACTCAGGAG+GGG | 0.627001 | 4.2:-4284060 | MS.gene048942:CDS |
| GCAAACCTCCTAATACATCC+GGG | 0.627613 | 4.2:-4281849 | MS.gene048942:CDS |
| ATGATTGCAGAGATGATGAC+TGG | 0.628430 | 4.2:-4289853 | MS.gene048942:intron |
| CAGATGGCAATTCAATAAAG+GGG | 0.633431 | 4.2:-4287312 | MS.gene048942:CDS |
| AAAAGAAAGAAAACATGACT+GGG | 0.634095 | 4.2:-4284784 | MS.gene048942:CDS |
| AGTTTATAGAGGATTTGTTG+CGG | 0.634669 | 4.2:+4284669 | None:intergenic |
| TGAGCCATGTAAGTTAATGT+CGG | 0.634802 | 4.2:-4287107 | MS.gene048942:CDS |
| CAAGACTATTAAAGCAACAG+AGG | 0.636817 | 4.2:-4284168 | MS.gene048942:CDS |
| CCTTTAGGGCTGCTATAACA+GGG | 0.637214 | 4.2:-4284610 | MS.gene048942:CDS |
| ACTGTGTCACCGATCATGAA+GGG | 0.639740 | 4.2:-4287049 | MS.gene048942:CDS |
| AAGTGGGCAGAGATTAGTGA+TGG | 0.639850 | 4.2:+4290573 | None:intergenic |
| GGTGAATTACAATCATTACA+TGG | 0.640283 | 4.2:-4282009 | MS.gene048942:CDS |
| AGTTTGCACGGGTGATGATG+AGG | 0.641447 | 4.2:+4282602 | None:intergenic |
| TGCACGGGTGATGATGAGGT+TGG | 0.643445 | 4.2:+4282606 | None:intergenic |
| AATGGTGCATTACCTTCCAA+AGG | 0.646787 | 4.2:+4286624 | None:intergenic |
| TGTGTGGGATTTGATACTGA+AGG | 0.648912 | 4.2:-4288418 | MS.gene048942:CDS |
| GTAATGAAAAGGAAGTGTCA+GGG | 0.649835 | 4.2:-4282458 | MS.gene048942:CDS |
| ATTCCAGAAACAAGTGAGAG+AGG | 0.650251 | 4.2:-4287166 | MS.gene048942:CDS |
| ATGGATATGGTTATTGACAG+GGG | 0.650966 | 4.2:-4290882 | MS.gene048942:CDS |
| GCTACAGCTTACCTGCCTCA+CGG | 0.652429 | 4.2:+4283679 | None:intergenic |
| GGACCGATGAAAATATTCGA+AGG | 0.652969 | 4.2:-4281828 | MS.gene048942:CDS |
| GGATCAACAGCACCTTCACA+TGG | 0.653448 | 4.2:+4282099 | None:intergenic |
| ATCACACCACTCTTGCACAA+TGG | 0.654773 | 4.2:+4281386 | None:intergenic |
| TCACGGCTGAACAGTACAGG+TGG | 0.655166 | 4.2:-4281364 | MS.gene048942:CDS |
| AGATCCCCATCAACTTCAGG+AGG | 0.655605 | 4.2:+4287136 | None:intergenic |
| ACAGGTAGAAGCCTACATCA+AGG | 0.658247 | 4.2:-4281420 | MS.gene048942:intron |
| CACGGCTGAACAGTACAGGT+GGG | 0.658297 | 4.2:-4281363 | MS.gene048942:CDS |
| AGATGGCAATTCAATAAAGG+GGG | 0.669533 | 4.2:-4287311 | MS.gene048942:CDS |
| AAGTACGTGAAAATCTAACA+AGG | 0.671379 | 4.2:-4284514 | MS.gene048942:CDS |
| ACGAACCGTAAGCTTTCCAA+GGG | 0.671646 | 4.2:-4284842 | MS.gene048942:CDS |
| ATTACATGGAGAGGGCAAGA+CGG | 0.675282 | 4.2:-4281995 | MS.gene048942:CDS |
| AGGAGTCCAGAAGAAACGGA+AGG | 0.678183 | 4.2:+4282123 | None:intergenic |
| AAGCTTCAACCGATAGTTCG+GGG | 0.688218 | 4.2:+4285020 | None:intergenic |
| TTGTGATGACAGTGCCAGAG+TGG | 0.696980 | 4.2:-4286440 | MS.gene048942:CDS |
| TGAGAAAGTAAAGAAACTCG+CGG | 0.702852 | 4.2:-4281264 | MS.gene048942:CDS |
| ATAAAATTCCAGTATCCGTG+AGG | 0.706166 | 4.2:-4283694 | MS.gene048942:CDS |
| AAGGTACATCTGACAGTACG+TGG | 0.709384 | 4.2:-4288399 | MS.gene048942:CDS |
| AATGTTTAGAGCTAATGACT+CGG | 0.710307 | 4.2:-4284966 | MS.gene048942:CDS |
| AAAGTAGATAAGATTGTACG+TGG | 0.730669 | 4.2:-4284101 | MS.gene048942:CDS |
| GAAAACAATGAAGTGCCAGG+AGG | 0.758156 | 4.2:-4282219 | MS.gene048942:CDS |
| TGATACGGGAGAGACAGCTG+TGG | 0.814386 | 4.2:-4287218 | MS.gene048942:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4281223 | 4291161 | 4281223 | ID=MS.gene048942 |
| chr4.2 | mRNA | 4281223 | 4291161 | 4281223 | ID=MS.gene048942.t1;Parent=MS.gene048942 |
| chr4.2 | exon | 4291087 | 4291161 | 4291087 | ID=MS.gene048942.t1.exon1;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4291087 | 4291161 | 4291087 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4290858 | 4290943 | 4290858 | ID=MS.gene048942.t1.exon2;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4290858 | 4290943 | 4290858 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4290537 | 4290627 | 4290537 | ID=MS.gene048942.t1.exon3;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4290537 | 4290627 | 4290537 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4290259 | 4290308 | 4290259 | ID=MS.gene048942.t1.exon4;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4290259 | 4290308 | 4290259 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4289796 | 4289865 | 4289796 | ID=MS.gene048942.t1.exon5;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4289796 | 4289865 | 4289796 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4288981 | 4289090 | 4288981 | ID=MS.gene048942.t1.exon6;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4288981 | 4289090 | 4288981 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4288388 | 4288453 | 4288388 | ID=MS.gene048942.t1.exon7;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4288388 | 4288453 | 4288388 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4286840 | 4287363 | 4286840 | ID=MS.gene048942.t1.exon8;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4286840 | 4287363 | 4286840 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4286637 | 4286717 | 4286637 | ID=MS.gene048942.t1.exon9;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4286637 | 4286717 | 4286637 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4286409 | 4286484 | 4286409 | ID=MS.gene048942.t1.exon10;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4286409 | 4286484 | 4286409 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4283869 | 4285084 | 4283869 | ID=MS.gene048942.t1.exon11;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4283869 | 4285084 | 4283869 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4283691 | 4283765 | 4283691 | ID=MS.gene048942.t1.exon12;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4283691 | 4283765 | 4283691 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4281765 | 4282850 | 4281765 | ID=MS.gene048942.t1.exon13;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4281765 | 4282850 | 4281765 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| chr4.2 | exon | 4281223 | 4281438 | 4281223 | ID=MS.gene048942.t1.exon14;Parent=MS.gene048942.t1 |
| chr4.2 | CDS | 4281223 | 4281438 | 4281223 | ID=cds.MS.gene048942.t1;Parent=MS.gene048942.t1 |
| Gene Sequence |
| Protein sequence |
