Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048948.t1 | KEH21251.1 | 98.2 | 869 | 16 | 0 | 1 | 869 | 1 | 869 | 0.00E+00 | 1528.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048948.t1 | Q5SMU7 | 68.8 | 674 | 203 | 3 | 197 | 869 | 126 | 793 | 8.2e-277 | 954.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048948.t1 | A0A072TVQ3 | 98.2 | 869 | 16 | 0 | 1 | 869 | 1 | 869 | 0.0e+00 | 1528.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048948.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048948.t1 | MTR_8g099640 | 98.274 | 869 | 15 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1783 |
| MS.gene048948.t1 | MTR_3g060290 | 87.805 | 82 | 7 | 3 | 165 | 245 | 17 | 96 | 3.31e-32 | 122 |
| MS.gene048948.t1 | MTR_3g463490 | 30.855 | 269 | 166 | 7 | 493 | 754 | 80 | 335 | 3.95e-27 | 116 |
| MS.gene048948.t1 | MTR_3g463490 | 30.855 | 269 | 166 | 7 | 493 | 754 | 80 | 335 | 7.40e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048948.t1 | AT4G14700 | 66.086 | 746 | 209 | 10 | 130 | 869 | 81 | 788 | 0.0 | 972 |
| MS.gene048948.t1 | AT4G12620 | 70.606 | 677 | 180 | 6 | 197 | 869 | 131 | 792 | 0.0 | 961 |
| MS.gene048948.t1 | AT1G07270 | 28.707 | 317 | 210 | 10 | 490 | 799 | 110 | 417 | 1.82e-30 | 126 |
| MS.gene048948.t1 | AT1G07270 | 28.707 | 317 | 210 | 10 | 490 | 799 | 110 | 417 | 2.59e-30 | 126 |
| MS.gene048948.t1 | AT2G29680 | 27.469 | 324 | 207 | 11 | 489 | 799 | 112 | 420 | 1.38e-26 | 115 |
| MS.gene048948.t1 | AT2G29680 | 25.070 | 355 | 207 | 12 | 489 | 799 | 112 | 451 | 3.09e-21 | 99.0 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATGAATCTGGCGATTT+TGG | 0.133439 | 4.1:-4393930 | None:intergenic |
| GTTAGTTACCGACTGGTTTC+TGG | 0.202474 | 4.1:-4397475 | None:intergenic |
| TGAAGCTGCTGATAATTATA+TGG | 0.208304 | 4.1:-4397893 | None:intergenic |
| CTGCACAAGGGACGGTTCTT+TGG | 0.215974 | 4.1:+4396661 | MS.gene048948:CDS |
| CGCCCAACAGAAGTCTCTTC+TGG | 0.247491 | 4.1:-4394686 | None:intergenic |
| CTCTATATTCACGGTGTTCC+GGG | 0.266627 | 4.1:+4396966 | MS.gene048948:CDS |
| TCATCGGTTTGCATCATTAA+AGG | 0.269320 | 4.1:-4400970 | None:intergenic |
| AGGCAGCTGAAGAAGTAATA+AGG | 0.285779 | 4.1:-4400950 | None:intergenic |
| CCTCTATATTCACGGTGTTC+CGG | 0.288739 | 4.1:+4396965 | MS.gene048948:CDS |
| GTCATATATGAAGCATTAAA+TGG | 0.289669 | 4.1:+4397327 | MS.gene048948:CDS |
| CTTCAGGTTGCAGCTATATC+AGG | 0.290038 | 4.1:+4398097 | MS.gene048948:intron |
| TTTACAGATTTCGATGAATC+TGG | 0.295754 | 4.1:-4393939 | None:intergenic |
| AACCTACATTCCTCCACTTC+TGG | 0.299054 | 4.1:-4394257 | None:intergenic |
| CCGATTCTTCTCCCTCTTCT+CGG | 0.303926 | 4.1:-4393747 | None:intergenic |
| CTAGCTTTGGCATACTCCTT+AGG | 0.308499 | 4.1:-4396147 | None:intergenic |
| ATCTCCCTCATTGCTAGCTT+TGG | 0.313313 | 4.1:-4396160 | None:intergenic |
| TTCTTACCCTTCGGCGGCTT+TGG | 0.317699 | 4.1:-4394437 | None:intergenic |
| GGAGATCAATGGTCTGAAAT+TGG | 0.328776 | 4.1:+4397194 | MS.gene048948:CDS |
| GGGAGATTGAAGAAGCTTCT+TGG | 0.333604 | 4.1:-4393586 | None:intergenic |
| AAAGAATTCCAGAGCATATA+AGG | 0.339598 | 4.1:+4396704 | MS.gene048948:CDS |
| ATACCTGCAGCAACATTATC+AGG | 0.340644 | 4.1:-4398199 | None:intergenic |
| TTTGTAGAAGGGAAGAAAAC+TGG | 0.345764 | 4.1:+4397396 | MS.gene048948:CDS |
| CTAAATGAGAGGTTTGTAGA+AGG | 0.346073 | 4.1:+4397384 | MS.gene048948:CDS |
| ATTGAGTGTGATAGTTGTTT+AGG | 0.355173 | 4.1:+4394308 | MS.gene048948:CDS |
| TGAGATTCGGCAACGAGATT+GGG | 0.367135 | 4.1:-4393708 | None:intergenic |
| TTGATCTCCACGAAACAGTA+TGG | 0.382365 | 4.1:-4397180 | None:intergenic |
| CCACATATCCAATCCCCTTC+AGG | 0.385042 | 4.1:-4394374 | None:intergenic |
| GCTGAATTGAAGAAGAGAAA+TGG | 0.386079 | 4.1:+4393990 | MS.gene048948:CDS |
| TAGCTTTGGCATACTCCTTA+GGG | 0.393164 | 4.1:-4396146 | None:intergenic |
| TTTCAACTCACTTGAATATG+AGG | 0.394384 | 4.1:-4399576 | None:intergenic |
| TTGAGATTCGGCAACGAGAT+TGG | 0.395152 | 4.1:-4393709 | None:intergenic |
| TATTTCTGACAATCAATGTC+TGG | 0.396034 | 4.1:+4396935 | MS.gene048948:CDS |
| ATAAGTCTTACCCAACTTGC+AGG | 0.400447 | 4.1:-4400632 | None:intergenic |
| AGAGTGACGGTGACGAAGAC+TGG | 0.402154 | 4.1:+4396438 | MS.gene048948:CDS |
| AGGAGATGCACGCCGTGCTT+TGG | 0.412726 | 4.1:+4398117 | MS.gene048948:CDS |
| GGAGATTGAAGAAGCTTCTT+GGG | 0.412877 | 4.1:-4393585 | None:intergenic |
| CTAACAAGCTTCTTACCCTT+CGG | 0.416592 | 4.1:-4394446 | None:intergenic |
| GCTATATCGGACCAACGATT+TGG | 0.417826 | 4.1:+4394733 | MS.gene048948:CDS |
| TGAGAATTGTGAACGGAGGT+TGG | 0.424141 | 4.1:-4393619 | None:intergenic |
| AAAACGGTTGTTACAAGAGC+TGG | 0.428477 | 4.1:+4394107 | MS.gene048948:CDS |
| GAAGCTGCTGATAATTATAT+GGG | 0.430667 | 4.1:-4397892 | None:intergenic |
| ATTTGAGCAGAGAGCTATAT+CGG | 0.433378 | 4.1:+4394720 | MS.gene048948:CDS |
| TTCTTTGGACTTCAGAAGAT+AGG | 0.436400 | 4.1:+4396676 | MS.gene048948:CDS |
| ATGATATCCTCCTGCAAGTT+GGG | 0.437262 | 4.1:+4400622 | MS.gene048948:CDS |
| AGCAATGGTGAAGTGTTTCC+TGG | 0.439086 | 4.1:+4400597 | MS.gene048948:CDS |
| GAGCTTTACAAAACAGGAAT+GGG | 0.441059 | 4.1:+4400148 | MS.gene048948:CDS |
| TCCGACGTCGCCGGATCAAT+CGG | 0.442884 | 4.1:+4394043 | MS.gene048948:CDS |
| GACGGCGGTGAATTTGAAGT+TGG | 0.443655 | 4.1:+4394182 | MS.gene048948:CDS |
| GGGCGTTGCCTCTATATTCA+CGG | 0.455755 | 4.1:+4396957 | MS.gene048948:CDS |
| GGCTTCAATCAAGTGATTTG+TGG | 0.457739 | 4.1:+4394483 | MS.gene048948:CDS |
| CATTCCAAGCTAATTGTGAT+AGG | 0.457837 | 4.1:+4397621 | MS.gene048948:CDS |
| GGCAGCTGAAGAAGTAATAA+GGG | 0.462770 | 4.1:-4400949 | None:intergenic |
| ATCATTTCGAGTCGCCTCAA+TGG | 0.464299 | 4.1:+4397920 | MS.gene048948:CDS |
| ACGGCGGTGAATTTGAAGTT+GGG | 0.465132 | 4.1:+4394183 | MS.gene048948:CDS |
| CTTACCTATCACAATTAGCT+TGG | 0.465486 | 4.1:-4397625 | None:intergenic |
| AAGATGTTCCTGAAGGGGAT+TGG | 0.466368 | 4.1:+4394366 | MS.gene048948:CDS |
| TCGGAGCGAATGAAACCTTA+AGG | 0.466715 | 4.1:-4394025 | None:intergenic |
| GTGCACGAGCTTTACAAAAC+AGG | 0.469313 | 4.1:+4400142 | MS.gene048948:CDS |
| TGATTGTTGAATTTGAGATT+CGG | 0.470559 | 4.1:-4393721 | None:intergenic |
| CATCAAACCATACTGTTTCG+TGG | 0.472974 | 4.1:+4397173 | MS.gene048948:CDS |
| TTTCTACAAGGTAAAGACTT+AGG | 0.474900 | 4.1:-4396784 | None:intergenic |
| TTGTGAGACCTTATATGCTC+TGG | 0.474919 | 4.1:-4396712 | None:intergenic |
| TTCTTAGTTTCCGATTGATC+CGG | 0.476110 | 4.1:-4394053 | None:intergenic |
| CGAGGTCAAGGTTGAGAAAA+CGG | 0.476473 | 4.1:+4394091 | MS.gene048948:CDS |
| GCCCAACAGAAGTCTCTTCT+GGG | 0.476671 | 4.1:-4394685 | None:intergenic |
| ATACGAGGAAGTAACTTCTC+TGG | 0.476939 | 4.1:-4397833 | None:intergenic |
| GCTTCAATCAAGTGATTTGT+GGG | 0.480427 | 4.1:+4394484 | MS.gene048948:CDS |
| CCTGAAGGGGATTGGATATG+TGG | 0.480446 | 4.1:+4394374 | MS.gene048948:CDS |
| TGGGAAGGGAGATTCCCTTA+AGG | 0.483741 | 4.1:+4394010 | MS.gene048948:CDS |
| CTGAATTGAAGAAGAGAAAT+GGG | 0.485254 | 4.1:+4393991 | MS.gene048948:CDS |
| GAGTGTGATAGTTGTTTAGG+TGG | 0.490466 | 4.1:+4394311 | MS.gene048948:CDS |
| TCATGTCTCTGCGGCAGCAA+TGG | 0.493304 | 4.1:+4400582 | MS.gene048948:CDS |
| TGGTCTGAAATTGGCTTCAC+CGG | 0.494433 | 4.1:+4397203 | MS.gene048948:CDS |
| TTCTGTACAATATTCTTGAC+TGG | 0.495175 | 4.1:+4397586 | MS.gene048948:CDS |
| GCAGCTACTGGTGTCGGGTA+CGG | 0.495197 | 4.1:+4394651 | MS.gene048948:CDS |
| TAAATGAGAGGTTTGTAGAA+GGG | 0.497183 | 4.1:+4397385 | MS.gene048948:CDS |
| ATTCACGGTGTTCCGGGCAC+TGG | 0.498438 | 4.1:+4396972 | MS.gene048948:CDS |
| AACAATGCAGTTGGCAATGA+CGG | 0.500318 | 4.1:+4400557 | MS.gene048948:intron |
| GTGGCACAGTTTCAAACGCT+TGG | 0.500569 | 4.1:+4396218 | MS.gene048948:CDS |
| GTTACAAGAGCTGGGAGAAA+AGG | 0.500757 | 4.1:+4394116 | MS.gene048948:CDS |
| AAAGCCTCTGGATGCCCATT+CGG | 0.503391 | 4.1:-4397862 | None:intergenic |
| GGATGGCAGCTACTGGTGTC+GGG | 0.503839 | 4.1:+4394646 | MS.gene048948:CDS |
| TTCACCTTGTAAATATTCTC+CGG | 0.504027 | 4.1:-4397222 | None:intergenic |
| CCGAGAAGAGGGAGAAGAAT+CGG | 0.504286 | 4.1:+4393747 | MS.gene048948:CDS |
| GCAGCTAACTGATGGCTTGT+CGG | 0.504655 | 4.1:-4396545 | None:intergenic |
| TTCATTCGCTCCGACGTCGC+CGG | 0.505449 | 4.1:+4394034 | MS.gene048948:CDS |
| ATCTGTGAGGGTCGTAAGAT+GGG | 0.506846 | 4.1:+4394398 | MS.gene048948:CDS |
| CGGAGCGAATGAAACCTTAA+GGG | 0.510307 | 4.1:-4394024 | None:intergenic |
| CCTCGTATATCAAGCCGAAT+GGG | 0.511380 | 4.1:+4397848 | MS.gene048948:CDS |
| GATAGTACCTTGCCAGTGCC+CGG | 0.512164 | 4.1:-4396984 | None:intergenic |
| ATCCCAGAAGAGACTTCTGT+TGG | 0.512492 | 4.1:+4394683 | MS.gene048948:CDS |
| TCAAGACGAGATTTCGCAGC+TGG | 0.512532 | 4.1:-4393783 | None:intergenic |
| CGGAAACTAAGAAGAGAAAG+AGG | 0.512657 | 4.1:+4394063 | MS.gene048948:CDS |
| GATCTGTGAGGGTCGTAAGA+TGG | 0.515072 | 4.1:+4394397 | MS.gene048948:CDS |
| TTGAAGTCAGAAGTTGATGC+AGG | 0.515204 | 4.1:+4397147 | MS.gene048948:CDS |
| ATTTCTGACAATCAATGTCT+GGG | 0.516051 | 4.1:+4396936 | MS.gene048948:CDS |
| AGCTTGGAATGTGGCTTGGT+TGG | 0.517458 | 4.1:-4397609 | None:intergenic |
| CAAATATATCAATTCCATTG+AGG | 0.517649 | 4.1:-4397934 | None:intergenic |
| TGGAGCAAATGCAATTTCAT+CGG | 0.518476 | 4.1:-4393910 | None:intergenic |
| TACTGTTTCGTGGAGATCAA+TGG | 0.518500 | 4.1:+4397183 | MS.gene048948:CDS |
| GATCCTGATAATGTTGCTGC+AGG | 0.521500 | 4.1:+4398196 | MS.gene048948:CDS |
| TACAAGAAAGTTGTTTATGA+CGG | 0.522606 | 4.1:+4394164 | MS.gene048948:CDS |
| GCATTAAATGGACACAGGGT+TGG | 0.523201 | 4.1:+4397339 | MS.gene048948:CDS |
| GGTAAGGAATGAGGAGTGAG+AGG | 0.524682 | 4.1:-4393642 | None:intergenic |
| CAAACCTCTCATTTAGCAAA+CGG | 0.525477 | 4.1:-4397377 | None:intergenic |
| ATGGGGCAAAGCAAAGCCTC+TGG | 0.529383 | 4.1:-4397874 | None:intergenic |
| AGCGTTTGAAACTGTGCCAC+TGG | 0.529464 | 4.1:-4396215 | None:intergenic |
| TCAACATACTTATTTCTACA+AGG | 0.530757 | 4.1:-4396796 | None:intergenic |
| TTGAAGAAGAGAAATGGGAA+GGG | 0.532289 | 4.1:+4393996 | MS.gene048948:CDS |
| GCTCGTGCACCATAGCTGTC+AGG | 0.532743 | 4.1:-4400129 | None:intergenic |
| CGTGGATCTACGTGTAGGTA+AGG | 0.533392 | 4.1:-4393658 | None:intergenic |
| CTCGATGTTGGCCAAATCGT+TGG | 0.533909 | 4.1:-4394744 | None:intergenic |
| TGGATGGCAGCTACTGGTGT+CGG | 0.533932 | 4.1:+4394645 | MS.gene048948:CDS |
| ATCTGTAAAGAAGAGGAAGC+AGG | 0.534383 | 4.1:+4393953 | MS.gene048948:CDS |
| TCACTTGAATATGAGGTGCT+TGG | 0.534848 | 4.1:-4399569 | None:intergenic |
| CGAGCTTTACAAAACAGGAA+TGG | 0.537464 | 4.1:+4400147 | MS.gene048948:CDS |
| AATTAGCTTGGAATGTGGCT+TGG | 0.540690 | 4.1:-4397613 | None:intergenic |
| CGGTGTTCCGGGCACTGGCA+AGG | 0.541081 | 4.1:+4396977 | MS.gene048948:CDS |
| ATCCAGAAGTGGAGGAATGT+AGG | 0.542570 | 4.1:+4394255 | MS.gene048948:CDS |
| GAGATTCGGCAACGAGATTG+GGG | 0.543738 | 4.1:-4393707 | None:intergenic |
| TAAATGGACACAGGGTTGGA+TGG | 0.543748 | 4.1:+4397343 | MS.gene048948:CDS |
| GTGAAGCAGGTGCCAAGCAC+AGG | 0.543759 | 4.1:+4400883 | MS.gene048948:CDS |
| AGTGTGATAGTTGTTTAGGT+GGG | 0.547500 | 4.1:+4394312 | MS.gene048948:CDS |
| CATGATATCCTCCTGCAAGT+TGG | 0.553301 | 4.1:+4400621 | MS.gene048948:CDS |
| CCGGAACACCGTGAATATAG+AGG | 0.553353 | 4.1:-4396965 | None:intergenic |
| CATCGAAATCTGTAAAGAAG+AGG | 0.553381 | 4.1:+4393946 | MS.gene048948:CDS |
| TCCTCGTATATCAAGCCGAA+TGG | 0.555101 | 4.1:+4397847 | MS.gene048948:CDS |
| TTCTTGGGAGTTGAAGCCAT+TGG | 0.556223 | 4.1:-4393570 | None:intergenic |
| GGGATGATGTTTATGTGAAG+AGG | 0.559397 | 4.1:+4394204 | MS.gene048948:CDS |
| AAAGAGGAAGAACGAGGTCA+AGG | 0.561799 | 4.1:+4394079 | MS.gene048948:CDS |
| TGCAGGAGGATATCATGTCC+AGG | 0.562882 | 4.1:-4400615 | None:intergenic |
| AACAATCAACTCCGAGAAGA+GGG | 0.566074 | 4.1:+4393736 | MS.gene048948:CDS |
| AGCTCTCTGCTCAAATTATG+TGG | 0.566453 | 4.1:-4394713 | None:intergenic |
| TTCATACTGCAGCTAACTGA+TGG | 0.566543 | 4.1:-4396553 | None:intergenic |
| ATTGAAGAAGAGAAATGGGA+AGG | 0.568468 | 4.1:+4393995 | MS.gene048948:CDS |
| TTGGATATGTGGGATCTGTG+AGG | 0.570339 | 4.1:+4394385 | MS.gene048948:CDS |
| ACAATCCATCACCTCGATGT+TGG | 0.575437 | 4.1:-4394756 | None:intergenic |
| CTCTCCGTTTGCTAAATGAG+AGG | 0.575524 | 4.1:+4397373 | MS.gene048948:CDS |
| TGTGGGCTGCTCGCATTGAG+AGG | 0.577481 | 4.1:+4394501 | MS.gene048948:CDS |
| AGGGAAGAAAACTGGAGAAG+AGG | 0.577588 | 4.1:+4397404 | MS.gene048948:CDS |
| TCCCAGAAGAGACTTCTGTT+GGG | 0.577921 | 4.1:+4394684 | MS.gene048948:CDS |
| AAGAAGTGGATGGCAGCTAC+TGG | 0.578137 | 4.1:+4394639 | MS.gene048948:CDS |
| GGGCTTTGAGAAATAACCTC+GGG | 0.578651 | 4.1:-4400929 | None:intergenic |
| CGTTGAAAGATGTTCCTGAA+GGG | 0.581179 | 4.1:+4394360 | MS.gene048948:CDS |
| TCCGATTGATCCGGCGACGT+CGG | 0.582582 | 4.1:-4394044 | None:intergenic |
| TATGCCAAAGCTAGCAATGA+GGG | 0.585809 | 4.1:+4396156 | MS.gene048948:CDS |
| TGAGAGGTGAGAATTGTGAA+CGG | 0.585848 | 4.1:-4393626 | None:intergenic |
| TTGCTATGTCATGATCCCTA+AGG | 0.591823 | 4.1:+4396131 | MS.gene048948:CDS |
| TTGTTAGAACAATGCGTCAG+AGG | 0.591921 | 4.1:+4394462 | MS.gene048948:CDS |
| CCGTTGAAAGATGTTCCTGA+AGG | 0.592540 | 4.1:+4394359 | MS.gene048948:CDS |
| CTGAAGGGGATTGGATATGT+GGG | 0.593658 | 4.1:+4394375 | MS.gene048948:CDS |
| ACACAGGGTTGGATGGAAAG+AGG | 0.594099 | 4.1:+4397350 | MS.gene048948:CDS |
| AGGAAAGGGACTTGTTTGCA+TGG | 0.594820 | 4.1:+4399515 | MS.gene048948:intron |
| ACAAGCTTCTTACCCTTCGG+CGG | 0.596059 | 4.1:-4394443 | None:intergenic |
| CAACAATCAACTCCGAGAAG+AGG | 0.596926 | 4.1:+4393735 | MS.gene048948:CDS |
| TAGCAGTATATGGAAAGAAG+TGG | 0.597595 | 4.1:+4394625 | MS.gene048948:intron |
| AAACGGTTGTTACAAGAGCT+GGG | 0.597984 | 4.1:+4394108 | MS.gene048948:CDS |
| GTTGAAAGATGTTCCTGAAG+GGG | 0.598838 | 4.1:+4394361 | MS.gene048948:CDS |
| ATGAAGCATTAAATGGACAC+AGG | 0.600808 | 4.1:+4397334 | MS.gene048948:CDS |
| TACAGAATCTGCACAAGGGA+CGG | 0.603574 | 4.1:+4396653 | MS.gene048948:intron |
| GCTGTAAGTTGGGTGAGTGT+AGG | 0.604738 | 4.1:+4400850 | MS.gene048948:intron |
| GACTAATCTTGAAAGAGCAA+AGG | 0.606188 | 4.1:+4396738 | MS.gene048948:CDS |
| GTCTGCATATTTCCAAAGCA+CGG | 0.606454 | 4.1:-4398129 | None:intergenic |
| TGGATATGTGGGATCTGTGA+GGG | 0.607873 | 4.1:+4394386 | MS.gene048948:CDS |
| TTCACCGGAGAATATTTACA+AGG | 0.608665 | 4.1:+4397218 | MS.gene048948:CDS |
| TTCAGGGATAGCAAATACAA+TGG | 0.610395 | 4.1:+4397805 | MS.gene048948:intron |
| AATTTCTGAAGAAGAGAAGT+CGG | 0.611112 | 4.1:+4393877 | MS.gene048948:CDS |
| CGGCGGTGAATTTGAAGTTG+GGG | 0.617237 | 4.1:+4394184 | MS.gene048948:CDS |
| CCTTCAGGAACATCTTTCAA+CGG | 0.617438 | 4.1:-4394359 | None:intergenic |
| AGAAGATGCTACTTCTGATG+AGG | 0.621654 | 4.1:+4394229 | MS.gene048948:CDS |
| ACAAGAGCTGGGAGAAAAGG+TGG | 0.622286 | 4.1:+4394119 | MS.gene048948:CDS |
| TCATGATTTCGTCCCCAGAA+CGG | 0.622364 | 4.1:-4394286 | None:intergenic |
| TCGTCAATGAGCAAAATACA+TGG | 0.624876 | 4.1:-4397435 | None:intergenic |
| TGAGGAAGATCCAGAAGTGG+AGG | 0.628093 | 4.1:+4394247 | MS.gene048948:CDS |
| GTATGCCAAAGCTAGCAATG+AGG | 0.629062 | 4.1:+4396155 | MS.gene048948:CDS |
| CTACGTGTAGGTAAGGAATG+AGG | 0.635826 | 4.1:-4393651 | None:intergenic |
| CAATGAGCAAAATACATGGT+CGG | 0.635961 | 4.1:-4397431 | None:intergenic |
| CCCATTCGGCTTGATATACG+AGG | 0.638148 | 4.1:-4397848 | None:intergenic |
| TGAAGCATTAAATGGACACA+GGG | 0.640411 | 4.1:+4397335 | MS.gene048948:CDS |
| AGTATCGGAGTTCAAGCGCG+TGG | 0.641574 | 4.1:-4393676 | None:intergenic |
| AAGCGCGTGGATCTACGTGT+AGG | 0.642274 | 4.1:-4393663 | None:intergenic |
| GCTACTGGTGTCGGGTACGG+TGG | 0.642777 | 4.1:+4394654 | MS.gene048948:CDS |
| GCTAACTGATGGCTTGTCGG+TGG | 0.645325 | 4.1:-4396542 | None:intergenic |
| TGATGAGGAAGATCCAGAAG+TGG | 0.647235 | 4.1:+4394244 | MS.gene048948:CDS |
| AGGGCTTTGAGAAATAACCT+CGG | 0.647966 | 4.1:-4400930 | None:intergenic |
| ATCACAATTAGCTTGGAATG+TGG | 0.648587 | 4.1:-4397618 | None:intergenic |
| AGTATATGGAAAGAAGTGGA+TGG | 0.649668 | 4.1:+4394629 | MS.gene048948:intron |
| AGATTCGGCAACGAGATTGG+GGG | 0.651554 | 4.1:-4393706 | None:intergenic |
| AATATGAATATGACATCCAG+TGG | 0.656489 | 4.1:+4396199 | MS.gene048948:CDS |
| TCATGACATAGCAATGTCGA+AGG | 0.658256 | 4.1:-4396122 | None:intergenic |
| AAGAAAGTTGTTTATGACGG+CGG | 0.658330 | 4.1:+4394167 | MS.gene048948:CDS |
| GAGATAACGACATTCATCAA+AGG | 0.658884 | 4.1:+4396909 | MS.gene048948:CDS |
| TGAGTGTACTCTCAGTGATG+AGG | 0.663135 | 4.1:+4397121 | MS.gene048948:CDS |
| TCTTGTAACCAGAAACCAGT+CGG | 0.664804 | 4.1:+4397467 | MS.gene048948:CDS |
| CGAAGACTGGAACATCGACA+AGG | 0.665993 | 4.1:+4396451 | MS.gene048948:CDS |
| AAGCTGCTGATAATTATATG+GGG | 0.670932 | 4.1:-4397891 | None:intergenic |
| GAGGTGAGAATTGTGAACGG+AGG | 0.673704 | 4.1:-4393623 | None:intergenic |
| TGACATTGATGATGAAAGAG+AGG | 0.674539 | 4.1:+4396242 | MS.gene048948:CDS |
| AGTCTTACCCAACTTGCAGG+AGG | 0.676386 | 4.1:-4400629 | None:intergenic |
| TCAGGAACATCTTTCAACGG+TGG | 0.680289 | 4.1:-4394356 | None:intergenic |
| GCTTTACAAAACAGGAATGG+GGG | 0.682677 | 4.1:+4400150 | MS.gene048948:CDS |
| AGCTTTACAAAACAGGAATG+GGG | 0.683635 | 4.1:+4400149 | MS.gene048948:CDS |
| AAAAGGTGGAAAGATTGCGA+AGG | 0.684724 | 4.1:+4394133 | MS.gene048948:CDS |
| AATGATACAGAATCTGCACA+AGG | 0.686949 | 4.1:+4396648 | MS.gene048948:intron |
| GTAAAGAAGAGGAAGCAGGA+AGG | 0.690620 | 4.1:+4393957 | MS.gene048948:CDS |
| AGTTGCAGCTCAATTTCCCG+AGG | 0.692840 | 4.1:+4400913 | MS.gene048948:CDS |
| CAACGATTTGGCCAACATCG+AGG | 0.693338 | 4.1:+4394745 | MS.gene048948:CDS |
| GAAGAGAAAGAGGAAGAACG+AGG | 0.698607 | 4.1:+4394073 | MS.gene048948:CDS |
| TTTCTGACAATCAATGTCTG+GGG | 0.698842 | 4.1:+4396937 | MS.gene048948:CDS |
| TGAAGATGTTGAATATGACG+AGG | 0.699616 | 4.1:+4396493 | MS.gene048948:CDS |
| CAAGCCGAATGGGCATCCAG+AGG | 0.706358 | 4.1:+4397858 | MS.gene048948:CDS |
| ATGACGGTTTCATGTCTCTG+CGG | 0.719836 | 4.1:+4400573 | MS.gene048948:CDS |
| ATGATACAGAATCTGCACAA+GGG | 0.728041 | 4.1:+4396649 | MS.gene048948:intron |
| TAGAATTCTGATGAGAGTGA+CGG | 0.741239 | 4.1:+4396425 | MS.gene048948:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4393573 | 4400992 | 4393573 | ID=MS.gene048948 |
| chr4.1 | mRNA | 4393573 | 4400992 | 4393573 | ID=MS.gene048948.t1;Parent=MS.gene048948 |
| chr4.1 | exon | 4393573 | 4394522 | 4393573 | ID=MS.gene048948.t1.exon1;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4393573 | 4394522 | 4393573 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4394631 | 4394766 | 4394631 | ID=MS.gene048948.t1.exon2;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4394631 | 4394766 | 4394631 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4396111 | 4396263 | 4396111 | ID=MS.gene048948.t1.exon3;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4396111 | 4396263 | 4396111 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4396428 | 4396568 | 4396428 | ID=MS.gene048948.t1.exon4;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4396428 | 4396568 | 4396428 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4396658 | 4396809 | 4396658 | ID=MS.gene048948.t1.exon5;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4396658 | 4396809 | 4396658 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4396899 | 4396998 | 4396899 | ID=MS.gene048948.t1.exon6;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4396899 | 4396998 | 4396899 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4397117 | 4397239 | 4397117 | ID=MS.gene048948.t1.exon7;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4397117 | 4397239 | 4397117 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4397327 | 4397488 | 4397327 | ID=MS.gene048948.t1.exon8;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4397327 | 4397488 | 4397327 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4397585 | 4397642 | 4397585 | ID=MS.gene048948.t1.exon9;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4397585 | 4397642 | 4397585 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4397810 | 4398000 | 4397810 | ID=MS.gene048948.t1.exon10;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4397810 | 4398000 | 4397810 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4398103 | 4398217 | 4398103 | ID=MS.gene048948.t1.exon11;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4398103 | 4398217 | 4398103 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4399517 | 4399587 | 4399517 | ID=MS.gene048948.t1.exon12;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4399517 | 4399587 | 4399517 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4400094 | 4400189 | 4400094 | ID=MS.gene048948.t1.exon13;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4400094 | 4400189 | 4400094 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4400567 | 4400643 | 4400567 | ID=MS.gene048948.t1.exon14;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4400567 | 4400643 | 4400567 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| chr4.1 | exon | 4400851 | 4400992 | 4400851 | ID=MS.gene048948.t1.exon15;Parent=MS.gene048948.t1 |
| chr4.1 | CDS | 4400851 | 4400992 | 4400851 | ID=cds.MS.gene048948.t1;Parent=MS.gene048948.t1 |
| Gene Sequence |
| Protein sequence |
