AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049015

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049015.t1 MTR_8g101650 92.883 281 12 4 1 274 1 280 3.99e-170 471
MS.gene049015.t1 MTR_6g092540 52.145 303 102 13 1 274 1 289 9.01e-75 230
MS.gene049015.t1 MTR_2g100930 53.371 178 65 5 4 169 3 174 1.99e-46 159
MS.gene049015.t1 MTR_4g100630 47.283 184 67 6 4 176 3 167 1.32e-43 151
MS.gene049015.t1 MTR_5g037080 45.143 175 73 5 4 168 5 166 5.27e-38 136
MS.gene049015.t1 MTR_4g111975 67.089 79 25 1 99 176 132 210 4.85e-33 122
MS.gene049015.t1 MTR_3g104370 35.741 263 128 8 4 260 5 232 1.02e-31 117
MS.gene049015.t1 MTR_7g067080 76.056 71 16 1 99 168 134 204 1.01e-30 117
MS.gene049015.t1 MTR_3g462790 71.233 73 20 1 97 168 139 211 2.86e-30 115
MS.gene049015.t1 MTR_5g069710 70.270 74 21 1 96 168 123 196 3.07e-30 115
MS.gene049015.t1 MTR_1g111830 62.791 86 31 1 84 168 103 188 1.14e-29 112
MS.gene049015.t1 MTR_5g081860 64.474 76 24 1 96 168 116 191 5.81e-27 105
MS.gene049015.t1 MTR_4g107230 79.245 53 11 0 99 151 78 130 9.56e-27 105
MS.gene049015.t1 MTR_0036s0260 52.000 100 34 4 89 181 6 98 3.19e-25 99.8
MS.gene049015.t1 MTR_8g063600 60.000 80 29 1 99 175 100 179 2.14e-24 99.8
MS.gene049015.t1 MTR_2g090305 53.000 100 33 4 89 181 6 98 1.92e-23 94.7
MS.gene049015.t1 MTR_1g048660 55.556 81 34 2 106 185 13 92 8.07e-23 90.1
MS.gene049015.t1 MTR_5g088010 49.383 81 37 2 97 173 52 132 6.89e-19 84.0
MS.gene049015.t1 MTR_5g027570 52.632 76 33 2 101 173 88 163 1.18e-18 82.8
MS.gene049015.t1 MTR_1g033620 65.455 55 18 1 120 173 20 74 1.23e-17 80.5
MS.gene049015.t1 MTR_8g063870 54.286 70 29 1 107 173 94 163 1.70e-17 80.5
MS.gene049015.t1 MTR_5g088060 54.930 71 28 2 107 173 274 344 2.81e-17 81.6
MS.gene049015.t1 MTR_5g488160 54.930 71 28 2 107 173 274 344 2.81e-17 81.6
MS.gene049015.t1 MTR_5g027550 57.143 56 24 0 101 156 73 128 5.10e-16 75.5
MS.gene049015.t1 MTR_4g015130 65.455 55 18 1 115 168 3 57 5.29e-16 71.6
MS.gene049015.t1 MTR_1g083180 51.562 64 26 3 107 166 63 125 1.33e-12 65.1
MS.gene049015.t1 MTR_5g075760 63.830 47 16 1 107 153 107 152 1.22e-11 63.2
MS.gene049015.t1 MTR_5g075790 61.702 47 17 1 107 153 115 160 3.96e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049015.t1 AT5G56840 54.891 184 51 5 1 174 1 162 5.64e-53 172
MS.gene049015.t1 AT5G61620 47.904 167 81 3 4 168 10 172 1.88e-44 153
MS.gene049015.t1 AT5G47390 43.062 209 96 5 4 208 3 192 1.07e-43 152
MS.gene049015.t1 AT1G70000 47.514 181 60 6 4 169 3 163 5.52e-40 140
MS.gene049015.t1 AT1G70000 47.514 181 60 6 4 169 3 163 5.52e-40 140
MS.gene049015.t1 AT3G16350 44.286 210 63 7 4 169 3 202 3.85e-36 133
MS.gene049015.t1 AT1G49010 69.737 76 22 1 99 173 128 203 1.40e-32 122
MS.gene049015.t1 AT5G08520 63.855 83 27 2 99 178 112 194 1.74e-31 118
MS.gene049015.t1 AT5G01200 68.293 82 23 2 90 168 129 210 4.86e-31 116
MS.gene049015.t1 AT2G38090 73.239 71 18 1 99 168 135 205 5.59e-30 114
MS.gene049015.t1 AT5G58900 69.863 73 21 1 97 168 133 205 1.85e-29 113
MS.gene049015.t1 AT3G11280 54.128 109 43 3 96 199 118 224 3.03e-28 109
MS.gene049015.t1 AT3G11280 54.128 109 43 3 96 199 118 224 3.03e-28 109
MS.gene049015.t1 AT5G04760 65.714 70 23 1 100 168 94 163 4.54e-27 105
MS.gene049015.t1 AT5G05790 67.568 74 23 1 96 168 122 195 5.13e-27 106
MS.gene049015.t1 AT5G05790 67.568 74 23 1 96 168 122 195 5.13e-27 106
MS.gene049015.t1 AT1G19000 80.392 51 10 0 101 151 98 148 2.64e-25 102
MS.gene049015.t1 AT1G19000 80.392 51 10 0 101 151 98 148 2.64e-25 102
MS.gene049015.t1 AT1G74840 76.923 52 12 0 100 151 91 142 1.82e-24 98.6
MS.gene049015.t1 AT1G74840 76.923 52 12 0 100 151 91 142 2.43e-24 99.0
MS.gene049015.t1 AT3G10580 61.765 68 25 1 101 168 91 157 1.99e-21 90.9
MS.gene049015.t1 AT3G10580 61.765 68 25 1 101 168 91 157 2.64e-21 91.3
MS.gene049015.t1 AT5G23650 56.579 76 32 1 99 173 114 189 2.85e-21 92.0
MS.gene049015.t1 AT4G09450 67.925 53 17 0 101 153 87 139 6.76e-18 80.1
MS.gene049015.t1 AT3G10590 54.930 71 28 3 101 168 105 174 1.43e-14 71.2

Find 63 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATTAAGTGACGCTAAT+TGG 0.117960 4.1:-3565091 None:intergenic
CCTGCTGGCTCATTCCTTCT+TGG 0.142813 4.1:+3565067 MS.gene049015:CDS
TGCTAATTCAGTAGTAAATT+TGG 0.198359 4.1:+3564826 MS.gene049015:CDS
TTGGAGGACTTCGTCTCTTC+GGG 0.227891 4.1:+3563571 MS.gene049015:CDS
TTGTGCAGCAGTGCCTAATT+TGG 0.253498 4.1:+3564994 MS.gene049015:CDS
ATAATTACTCTACAGATAAT+TGG 0.274738 4.1:+3564954 MS.gene049015:CDS
TATACCTTTCTTTCTCTCTT+GGG 0.282804 4.1:-3563790 None:intergenic
ATATACCTTTCTTTCTCTCT+TGG 0.345963 4.1:-3563791 None:intergenic
CTTGGAGGACTTCGTCTCTT+CGG 0.346467 4.1:+3563570 MS.gene049015:CDS
GAAAGTGTGAGGTCCAAATT+AGG 0.360682 4.1:-3565007 None:intergenic
TTAATTAAGTGACGCTAATT+GGG 0.384534 4.1:-3565090 None:intergenic
CTGTGCTCTTCTTCTGTCCA+TGG 0.393875 4.1:-3564306 None:intergenic
GCTAATTCAGTAGTAAATTT+GGG 0.397356 4.1:+3564827 MS.gene049015:CDS
GAGCACAGAACATTCCTTGT+TGG 0.426067 4.1:+3564321 MS.gene049015:CDS
TGTTCGCATTGTGGTAAGAT+AGG 0.440998 4.1:+3563513 MS.gene049015:CDS
AATGAGGAAGATGGAGAGGA+TGG 0.441387 4.1:-3563672 None:intergenic
CATGGCTAGCGACTTGTGTA+GGG 0.443009 4.1:-3564407 None:intergenic
GCATGGCTAGCGACTTGTGT+AGG 0.465972 4.1:-3564408 None:intergenic
ATACCTTTCTTTCTCTCTTG+GGG 0.468820 4.1:-3563789 None:intergenic
CCAAGAAGGAATGAGCCAGC+AGG 0.469903 4.1:-3565067 None:intergenic
ATGAGGAGGAAGATGATAGT+TGG 0.475244 4.1:-3563596 None:intergenic
CAAAATCAACCCTCCCCTGC+TGG 0.476253 4.1:+3565052 MS.gene049015:CDS
GGATTAGAGAAGCTAGGAAA+AGG 0.476740 4.1:+3564342 MS.gene049015:CDS
TGCACATCCTTCACTACCCT+TGG 0.478767 4.1:+3563552 MS.gene049015:CDS
AGAAGCTAGGAAAAGGAGAC+TGG 0.482282 4.1:+3564349 MS.gene049015:CDS
CCTTTCTTTCTCTCTTGGGG+TGG 0.484527 4.1:-3563786 None:intergenic
TGGAGAGGATGGTGAGGGAA+AGG 0.486578 4.1:-3563661 None:intergenic
CAAGAAGGAATGAGCCAGCA+GGG 0.487978 4.1:-3565066 None:intergenic
TGCTTCTTCTTGTTTAAAGT+AGG 0.502048 4.1:-3564909 None:intergenic
GTAAGATAGGACATAATTGT+AGG 0.502669 4.1:+3563526 MS.gene049015:CDS
CCACCCCAAGAGAGAAAGAA+AGG 0.504684 4.1:+3563786 MS.gene049015:CDS
AGAGAATGAGGAAGATGGAG+AGG 0.510998 4.1:-3563676 None:intergenic
AAGGAATGAGCCAGCAGGGG+AGG 0.519594 4.1:-3565062 None:intergenic
GATGAAGAGAATGAGGAAGA+TGG 0.523435 4.1:-3563681 None:intergenic
AAATTTGGGTCATAAATTTG+AGG 0.527043 4.1:+3564841 MS.gene049015:CDS
CTTGTTGGATTAGAGAAGCT+AGG 0.528666 4.1:+3564336 MS.gene049015:CDS
TTGATTGATCAGGAGTTCCA+TGG 0.532260 4.1:+3564289 MS.gene049015:intron
ACATCCTTCACTACCCTTGG+AGG 0.544075 4.1:+3563555 MS.gene049015:CDS
TGACGCTAATTGGGCCAAGA+AGG 0.545277 4.1:-3565081 None:intergenic
AGGAATGAGCCAGCAGGGGA+GGG 0.549931 4.1:-3565061 None:intergenic
GGAAGATGGAGAGGATGGTG+AGG 0.553718 4.1:-3563667 None:intergenic
AGATATGAAATATTAGAAGT+GGG 0.561423 4.1:-3563744 None:intergenic
GATCAAGAAAAGCTTTAGCA+TGG 0.562627 4.1:+3563635 MS.gene049015:CDS
TAGATATGAAATATTAGAAG+TGG 0.562815 4.1:-3563745 None:intergenic
GAAGATGGAGAGGATGGTGA+GGG 0.564987 4.1:-3563666 None:intergenic
CGAAGAGACGAAGTCCTCCA+AGG 0.582973 4.1:-3563569 None:intergenic
AACACCAACACAAAAGAACA+AGG 0.589703 4.1:+3564800 MS.gene049015:CDS
TGATGTTGATGAAGAGAATG+AGG 0.596418 4.1:-3563688 None:intergenic
CTAGCTTCTCTAATCCAACA+AGG 0.600496 4.1:-3564335 None:intergenic
AGAAGAAAGTGTTCGCATTG+TGG 0.603130 4.1:+3563504 MS.gene049015:CDS
AAGTCCTCCAAGGGTAGTGA+AGG 0.604978 4.1:-3563559 None:intergenic
ACGTTCAAGTCTCTTCGACT+TGG 0.607278 4.1:+3564473 MS.gene049015:CDS
TTGTTTAAAGTAGGACAAAG+TGG 0.607562 4.1:-3564900 None:intergenic
TGTGAAGTTGAGATGAATGA+TGG 0.607811 4.1:+3564875 MS.gene049015:CDS
AAGAAGGAATGAGCCAGCAG+GGG 0.613479 4.1:-3565065 None:intergenic
TGGAGGACTTCGTCTCTTCG+GGG 0.623972 4.1:+3563572 MS.gene049015:CDS
GGTACTAGATGATGATGAGG+AGG 0.625545 4.1:-3563610 None:intergenic
CATGGTACTAGATGATGATG+AGG 0.639951 4.1:-3563613 None:intergenic
GAAGAGACGAAGTCCTCCAA+GGG 0.651358 4.1:-3563568 None:intergenic
ATGGCTAGCGACTTGTGTAG+GGG 0.659705 4.1:-3564406 None:intergenic
CTAGGAAAAGGAGACTGGAG+AGG 0.661686 4.1:+3564354 MS.gene049015:CDS
GGGATGCAACTGAAAGTGTG+AGG 0.693635 4.1:-3565018 None:intergenic
ACACCAACACAAAAGAACAA+GGG 0.712802 4.1:+3564801 MS.gene049015:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAAAATATTTATTT+AGG - chr4.1:3564714-3564733 None:intergenic 0.0%
!!! TTTTATTATTTTTATTTTTA+TGG + chr4.1:3564723-3564742 MS.gene049015:intron 0.0%
!! AAATAAAAAAAAGTTAAAAG+AGG - chr4.1:3564669-3564688 None:intergenic 10.0%
!! ATAAATTAAAAAACAAATGA+AGG - chr4.1:3564031-3564050 None:intergenic 10.0%
!!! ATAATAATTTTCATCAATAT+TGG - chr4.1:3563718-3563737 None:intergenic 10.0%
!! ATATTATTAATTCAATGACA+AGG - chr4.1:3564751-3564770 None:intergenic 15.0%
!! TATATTTATACATATGTTAG+CGG + chr4.1:3563809-3563828 MS.gene049015:intron 15.0%
!! TCTTATATTCCTTTATATAT+TGG + chr4.1:3564118-3564137 MS.gene049015:intron 15.0%
!!! ATAATTTTTATTTGTGGTTA+TGG - chr4.1:3564619-3564638 None:intergenic 15.0%
!!! TAATTTTTATTTGTGGTTAT+GGG - chr4.1:3564618-3564637 None:intergenic 15.0%
!!! TATAAAGGAATATAAGATTT+TGG - chr4.1:3564115-3564134 None:intergenic 15.0%
!! AATATAAAGTAAGTCTTACA+TGG + chr4.1:3564585-3564604 MS.gene049015:intron 20.0%
!! AGATATGAAATATTAGAAGT+GGG - chr4.1:3563747-3563766 None:intergenic 20.0%
!! ATAATTACTCTACAGATAAT+TGG + chr4.1:3564954-3564973 MS.gene049015:CDS 20.0%
!! TAGATATGAAATATTAGAAG+TGG - chr4.1:3563748-3563767 None:intergenic 20.0%
!! TATTCCTTTATATATTGGTA+TGG + chr4.1:3564123-3564142 MS.gene049015:intron 20.0%
!! TCAAAAATACTTTCTTAGAT+TGG + chr4.1:3564431-3564450 MS.gene049015:CDS 20.0%
!! TCTTTCAATTCTATTCTTAT+TGG - chr4.1:3564081-3564100 None:intergenic 20.0%
!!! TATCTATCAGATTGTTTTAT+AGG + chr4.1:3563762-3563781 MS.gene049015:CDS 20.0%
! AAATTTGGGTCATAAATTTG+AGG + chr4.1:3564841-3564860 MS.gene049015:CDS 25.0%
! AAGACTTACTTTATATTCAG+TGG - chr4.1:3564582-3564601 None:intergenic 25.0%
! ACATCCATACCAATATATAA+AGG - chr4.1:3564130-3564149 None:intergenic 25.0%
! ATACTTCTAATTTGAGCTAA+GGG + chr4.1:3564188-3564207 MS.gene049015:intron 25.0%
! ATGATGAATGAGAAAATACT+TGG + chr4.1:3564235-3564254 MS.gene049015:intron 25.0%
! GCTAATTCAGTAGTAAATTT+GGG + chr4.1:3564827-3564846 MS.gene049015:CDS 25.0%
! TATACTTCTAATTTGAGCTA+AGG + chr4.1:3564187-3564206 MS.gene049015:intron 25.0%
! TGATGAATGAGAAAATACTT+GGG + chr4.1:3564236-3564255 MS.gene049015:intron 25.0%
! TGCTAATTCAGTAGTAAATT+TGG + chr4.1:3564826-3564845 MS.gene049015:CDS 25.0%
!! TATATACTGATTGATTGATC+AGG + chr4.1:3564279-3564298 MS.gene049015:intron 25.0%
!!! ATTTTCTTGCTTTTCTGATT+TGG - chr4.1:3564936-3564955 None:intergenic 25.0%
!!! TAAGAAAGTATTTTTGAGCA+TGG - chr4.1:3564428-3564447 None:intergenic 25.0%
AATATGATATATTTGGCTGC+AGG + chr4.1:3564766-3564785 MS.gene049015:intron 30.0%
ATATACCTTTCTTTCTCTCT+TGG - chr4.1:3563794-3563813 None:intergenic 30.0%
GTAAGATAGGACATAATTGT+AGG + chr4.1:3563526-3563545 MS.gene049015:CDS 30.0%
TATACCTTTCTTTCTCTCTT+GGG - chr4.1:3563793-3563812 None:intergenic 30.0%
! TGCTTCTTCTTGTTTAAAGT+AGG - chr4.1:3564912-3564931 None:intergenic 30.0%
! TTGATTTTGTTCAAGCTTAG+GGG - chr4.1:3565041-3565060 None:intergenic 30.0%
! TTGTTTAAAGTAGGACAAAG+TGG - chr4.1:3564903-3564922 None:intergenic 30.0%
!! GTTGATTTTGTTCAAGCTTA+GGG - chr4.1:3565042-3565061 None:intergenic 30.0%
AAACAAATGAAGGAAGCTGT+TGG - chr4.1:3564021-3564040 None:intergenic 35.0%
AACACCAACACAAAAGAACA+AGG + chr4.1:3564800-3564819 MS.gene049015:CDS 35.0%
ACACCAACACAAAAGAACAA+GGG + chr4.1:3564801-3564820 MS.gene049015:CDS 35.0%
ATACCTTTCTTTCTCTCTTG+GGG - chr4.1:3563792-3563811 None:intergenic 35.0%
ATTTGAGCTAAGGGAGTTAA+TGG + chr4.1:3564197-3564216 MS.gene049015:intron 35.0%
TACATATGTTAGCGGAAAGA+TGG + chr4.1:3563817-3563836 MS.gene049015:intron 35.0%
TGTGAAGTTGAGATGAATGA+TGG + chr4.1:3564875-3564894 MS.gene049015:CDS 35.0%
! ATACCCTTGTTCTTTTGTGT+TGG - chr4.1:3564807-3564826 None:intergenic 35.0%
! GATCAAGAAAAGCTTTAGCA+TGG + chr4.1:3563635-3563654 MS.gene049015:CDS 35.0%
! GCTAAAGCTTTTCTTGATCA+TGG - chr4.1:3563634-3563653 None:intergenic 35.0%
! TGATGTTGATGAAGAGAATG+AGG - chr4.1:3563691-3563710 None:intergenic 35.0%
!! GGTTGATTTTGTTCAAGCTT+AGG - chr4.1:3565043-3565062 None:intergenic 35.0%
ATGAGGAGGAAGATGATAGT+TGG - chr4.1:3563599-3563618 None:intergenic 40.0%
CTAGCTTCTCTAATCCAACA+AGG - chr4.1:3564338-3564357 None:intergenic 40.0%
GATATATTTGGCTGCAGGTT+GGG + chr4.1:3564771-3564790 MS.gene049015:intron 40.0%
GATGAAGAGAATGAGGAAGA+TGG - chr4.1:3563684-3563703 None:intergenic 40.0%
GGATTAGAGAAGCTAGGAAA+AGG + chr4.1:3564342-3564361 MS.gene049015:CDS 40.0%
TATTTGTGGTTATGGGCTTG+TGG - chr4.1:3564611-3564630 None:intergenic 40.0%
TGATATATTTGGCTGCAGGT+TGG + chr4.1:3564770-3564789 MS.gene049015:intron 40.0%
TGTTCGCATTGTGGTAAGAT+AGG + chr4.1:3563513-3563532 MS.gene049015:CDS 40.0%
TTGATTGATCAGGAGTTCCA+TGG + chr4.1:3564289-3564308 MS.gene049015:intron 40.0%
! CATGGTACTAGATGATGATG+AGG - chr4.1:3563616-3563635 None:intergenic 40.0%
! CTTGTTGGATTAGAGAAGCT+AGG + chr4.1:3564336-3564355 MS.gene049015:CDS 40.0%
! GAAAGTGTGAGGTCCAAATT+AGG - chr4.1:3565010-3565029 None:intergenic 40.0%
!! AGAAGAAAGTGTTCGCATTG+TGG + chr4.1:3563504-3563523 MS.gene049015:CDS 40.0%
AATGAGGAAGATGGAGAGGA+TGG - chr4.1:3563675-3563694 None:intergenic 45.0%
ACGTTCAAGTCTCTTCGACT+TGG + chr4.1:3564473-3564492 MS.gene049015:CDS 45.0%
AGAAGCTAGGAAAAGGAGAC+TGG + chr4.1:3564349-3564368 MS.gene049015:CDS 45.0%
AGAGAATGAGGAAGATGGAG+AGG - chr4.1:3563679-3563698 None:intergenic 45.0%
GAGCACAGAACATTCCTTGT+TGG + chr4.1:3564321-3564340 MS.gene049015:CDS 45.0%
TTGTGCAGCAGTGCCTAATT+TGG + chr4.1:3564994-3565013 MS.gene049015:CDS 45.0%
! GGTACTAGATGATGATGAGG+AGG - chr4.1:3563613-3563632 None:intergenic 45.0%
!! AATTAATAATATGATATATT+TGG + chr4.1:3564759-3564778 MS.gene049015:intron 5.0%
!!! AATTAAATAATTTTTATTTG+TGG - chr4.1:3564625-3564644 None:intergenic 5.0%
AAGAAGGAATGAGCCAGCAG+GGG - chr4.1:3565068-3565087 None:intergenic 50.0%
AAGTCCTCCAAGGGTAGTGA+AGG - chr4.1:3563562-3563581 None:intergenic 50.0%
ACATCCTTCACTACCCTTGG+AGG + chr4.1:3563555-3563574 MS.gene049015:CDS 50.0%
ATGGCTAGCGACTTGTGTAG+GGG - chr4.1:3564409-3564428 None:intergenic 50.0%
CAAGAAGGAATGAGCCAGCA+GGG - chr4.1:3565069-3565088 None:intergenic 50.0%
CATGGCTAGCGACTTGTGTA+GGG - chr4.1:3564410-3564429 None:intergenic 50.0%
CCACCCCAAGAGAGAAAGAA+AGG + chr4.1:3563786-3563805 MS.gene049015:CDS 50.0%
CCTTTCTTTCTCTCTTGGGG+TGG - chr4.1:3563789-3563808 None:intergenic 50.0%
CTAGGAAAAGGAGACTGGAG+AGG + chr4.1:3564354-3564373 MS.gene049015:CDS 50.0%
CTGTGCTCTTCTTCTGTCCA+TGG - chr4.1:3564309-3564328 None:intergenic 50.0%
CTTGGAGGACTTCGTCTCTT+CGG + chr4.1:3563570-3563589 MS.gene049015:CDS 50.0%
GAAGAGACGAAGTCCTCCAA+GGG - chr4.1:3563571-3563590 None:intergenic 50.0%
GAAGATGGAGAGGATGGTGA+GGG - chr4.1:3563669-3563688 None:intergenic 50.0%
TGACGCTAATTGGGCCAAGA+AGG - chr4.1:3565084-3565103 None:intergenic 50.0%
TGCACATCCTTCACTACCCT+TGG + chr4.1:3563552-3563571 MS.gene049015:CDS 50.0%
TTGGAGGACTTCGTCTCTTC+GGG + chr4.1:3563571-3563590 MS.gene049015:CDS 50.0%
! GGGATGCAACTGAAAGTGTG+AGG - chr4.1:3565021-3565040 None:intergenic 50.0%
CAAAATCAACCCTCCCCTGC+TGG + chr4.1:3565052-3565071 MS.gene049015:CDS 55.0%
CCAAGAAGGAATGAGCCAGC+AGG - chr4.1:3565070-3565089 None:intergenic 55.0%
CGAAGAGACGAAGTCCTCCA+AGG - chr4.1:3563572-3563591 None:intergenic 55.0%
GCATGGCTAGCGACTTGTGT+AGG - chr4.1:3564411-3564430 None:intergenic 55.0%
GGAAGATGGAGAGGATGGTG+AGG - chr4.1:3563670-3563689 None:intergenic 55.0%
TGGAGAGGATGGTGAGGGAA+AGG - chr4.1:3563664-3563683 None:intergenic 55.0%
TGGAGGACTTCGTCTCTTCG+GGG + chr4.1:3563572-3563591 MS.gene049015:CDS 55.0%
!! CCTGCTGGCTCATTCCTTCT+TGG + chr4.1:3565067-3565086 MS.gene049015:CDS 55.0%
AAGGAATGAGCCAGCAGGGG+AGG - chr4.1:3565065-3565084 None:intergenic 60.0%
AGGAATGAGCCAGCAGGGGA+GGG - chr4.1:3565064-3565083 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 3563498 3565108 3563498 ID=MS.gene049015
chr4.1 mRNA 3563498 3565108 3563498 ID=MS.gene049015.t1;Parent=MS.gene049015
chr4.1 exon 3563498 3563807 3563498 ID=MS.gene049015.t1.exon1;Parent=MS.gene049015.t1
chr4.1 CDS 3563498 3563807 3563498 ID=cds.MS.gene049015.t1;Parent=MS.gene049015.t1
chr4.1 exon 3564301 3564494 3564301 ID=MS.gene049015.t1.exon2;Parent=MS.gene049015.t1
chr4.1 CDS 3564301 3564494 3564301 ID=cds.MS.gene049015.t1;Parent=MS.gene049015.t1
chr4.1 exon 3564788 3565108 3564788 ID=MS.gene049015.t1.exon3;Parent=MS.gene049015.t1
chr4.1 CDS 3564788 3565108 3564788 ID=cds.MS.gene049015.t1;Parent=MS.gene049015.t1
Gene Sequence

>MS.gene049015

ATGGGGAGAAGAAAGTGTTCGCATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACTACCCTTGGAGGACTTCGTCTCTTCGGGGTCCAACTATCATCTTCCTCCTCATCATCATCTAGTACCATGATCAAGAAAAGCTTTAGCATGGACACCTTTCCCTCACCATCCTCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATGAAAATTATTATCACAAACCCACTTCTAATATTTCATATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGAAAGAAAGGTATATTTATACATATGTTAGCGGAAAGATGGTCACTAATTAATGTTGTTTACGTTTTCTATTAATTTAATGTGTATTTTTTTATAGTATTTGTTGTATAGTTCATCAATTCAAAATTAATGAAAAATAAAATATATTTTTTTTTACAAATTTTATTGTTTGTAGTTGAAATGAAACTTCTTTCAAAACTAATTTATCATGTTCAAATTTCCAACAGCTTCCTTCATTTGTTTTTTAATTTATAATTTGTAATATACTAATATGTAACTACCAATAAGAATAGAATTGAAAGAAAAATGCTACACCAAAATCTTATATTCCTTTATATATTGGTATGGATGTATAGTCATGATCAATGTTAAGTAGTTATTCATACATGTATACTTCTAATTTGAGCTAAGGGAGTTAATGGATAAGTGTTTGAATCATGATGAATGAGAAAATACTTGGGATCTCTAGTCTAACATATATTATATACTGATTGATTGATCAGGAGTTCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGATTAGAGAAGCTAGGAAAAGGAGACTGGAGAGGCATCTCTAAAAACTTTGTCACTTCAAGAACCCCTACACAAGTCGCTAGCCATGCTCAAAAATACTTTCTTAGATTGGCTACTATCAACAAGAAGCGACGTTCAAGTCTCTTCGACTTGGTATATACACTATACTATGTTAGACAAATTCAATTCATTCATGATCATCAATTGCTTAATTGTTTAGCTATCTCTTGTCGTTCACCACTGAATATAAAGTAAGTCTTACATGGCCACAAGCCCATAACCACAAATAAAAATTATTTAATTAGTTACATTTCTTAATCTTTTCCTCTTTTAACTTTTTTTTATTTGTGTGTTCAAGTAAGTATTTTTCCTAAATAAATATTTTATTATTTTTATTTTTATGGATCCTTGTCATTGAATTAATAATATGATATATTTGGCTGCAGGTTGGGAGCAAGAACACCAACACAAAAGAACAAGGGTATGCTAATTCAGTAGTAAATTTGGGTCATAAATTTGAGGATAAGTGTAAATGTGAAGTTGAGATGAATGATGGCACCACTTTGTCCTACTTTAAACAAGAAGAAGCAGCCAAATCAGAAAAGCAAGAAAATAATTACTCTACAGATAATTGGCTACATGACTCTTCAAATTGTGCAGCAGTGCCTAATTTGGACCTCACACTTTCAGTTGCATCCCCTAAGCTTGAACAAAATCAACCCTCCCCTGCTGGCTCATTCCTTCTTGGCCCAATTAGCGTCACTTAA
Protein sequence

>MS.gene049015.t1

MGRRKCSHCGKIGHNCRTCTSFTTLGGLRLFGVQLSSSSSSSSSTMIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDENYYHKPTSNISYLSDCFIGPPQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFLRLATINKKRRSSLFDLVGSKNTNTKEQGYANSVVNLGHKFEDKCKCEVEMNDGTTLSYFKQEEAAKSEKQENNYSTDNWLHDSSNCAAVPNLDLTLSVASPKLEQNQPSPAGSFLLGPISVT