AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049038.t1 MTR_8g102100 94.010 384 15 3 1 379 1 381 0.0 716
MS.gene049038.t1 MTR_6g090380 55.366 410 112 8 1 373 1 376 2.51e-141 407
MS.gene049038.t1 MTR_3g103960 44.242 330 114 9 46 374 18 278 7.72e-77 239
MS.gene049038.t1 MTR_4g078660 71.818 110 31 0 75 184 54 163 8.03e-58 191
MS.gene049038.t1 MTR_2g090605 74.757 103 26 0 81 183 77 179 5.92e-57 191
MS.gene049038.t1 MTR_7g092070 72.897 107 29 0 77 183 260 366 4.53e-54 190
MS.gene049038.t1 MTR_5g071070 46.025 239 97 9 77 283 144 382 2.75e-53 186
MS.gene049038.t1 MTR_5g071070 46.025 239 97 9 77 283 226 464 9.20e-53 186
MS.gene049038.t1 MTR_3g029590 51.515 165 70 2 77 235 260 420 1.88e-51 183
MS.gene049038.t1 MTR_5g082830 54.037 161 70 1 77 237 213 369 1.31e-50 180
MS.gene049038.t1 MTR_3g435680 66.379 116 38 1 68 183 139 253 1.79e-50 174
MS.gene049038.t1 MTR_1g050438 63.551 107 39 0 77 183 224 330 1.12e-48 173
MS.gene049038.t1 MTR_0728s0020 63.551 107 39 0 77 183 240 346 1.84e-48 173
MS.gene049038.t1 MTR_1g075890 67.290 107 35 0 77 183 225 331 3.14e-47 170
MS.gene049038.t1 MTR_3g070880 49.693 163 54 3 77 237 159 295 3.17e-47 168
MS.gene049038.t1 MTR_3g435590 47.024 168 78 4 77 243 234 391 8.90e-47 166
MS.gene049038.t1 MTR_3g464270 46.914 162 75 4 79 238 7 159 4.54e-40 145
MS.gene049038.t1 MTR_3g464260 68.056 72 23 0 112 183 212 283 1.10e-29 120
MS.gene049038.t1 MTR_3g464290 60.759 79 30 1 77 154 96 174 4.74e-29 117
MS.gene049038.t1 MTR_3g464280 42.991 107 27 1 77 183 184 256 1.07e-20 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049038.t1 AT4G29190 54.308 383 137 14 1 373 1 355 4.00e-126 367
MS.gene049038.t1 AT2G19810 51.309 382 153 10 1 373 1 358 5.31e-114 337
MS.gene049038.t1 AT2G25900 44.904 363 138 9 1 350 1 314 1.67e-90 275
MS.gene049038.t1 AT2G25900 44.904 363 138 9 1 350 1 314 1.67e-90 275
MS.gene049038.t1 AT1G03790 63.433 134 48 1 52 184 53 186 4.54e-58 194
MS.gene049038.t1 AT5G44260 68.548 124 30 2 62 184 49 164 2.09e-55 187
MS.gene049038.t1 AT2G41900 71.028 107 31 0 77 183 257 363 3.40e-53 187
MS.gene049038.t1 AT5G12850 71.963 107 30 0 77 183 253 359 4.90e-53 187
MS.gene049038.t1 AT3G55980 46.829 205 94 4 77 278 207 399 1.23e-51 181
MS.gene049038.t1 AT3G55980 46.829 205 94 4 77 278 274 466 3.14e-51 181
MS.gene049038.t1 AT5G58620 69.159 107 33 0 77 183 205 311 7.20e-51 179
MS.gene049038.t1 AT5G07500 63.333 120 42 1 66 183 35 154 9.26e-51 170
MS.gene049038.t1 AT2G40140 53.459 159 69 1 77 235 210 363 1.04e-48 174
MS.gene049038.t1 AT2G40140 53.459 159 69 1 77 235 210 363 1.04e-48 174

Find 124 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCTGGTGAGCCCTTTCT+TGG 0.256293 4.1:+3368914 MS.gene049038:CDS
GGGTCGGATCACGGGTCCTC+TGG 0.290200 4.1:-3368661 None:intergenic
AATGGATCGGGTTCAGGTTC+GGG 0.301747 4.1:+3368855 MS.gene049038:CDS
TCCGGATGTTGGGTGGGTTT+CGG 0.313054 4.1:+3368893 MS.gene049038:CDS
CGTTGGTAGGCTACAGAATC+CGG 0.322086 4.1:-3368682 None:intergenic
CAACTTCCTTTACGAAAATC+AGG 0.327092 4.1:-3368186 None:intergenic
CTCACACGGCGGAGCAACTT+AGG 0.327174 4.1:+3368331 MS.gene049038:CDS
CACACCGCCGCCATGATGTT+AGG 0.327724 4.1:+3367793 None:intergenic
TGAAGTCATTACCTTCTTCA+TGG 0.329074 4.1:+3368604 MS.gene049038:CDS
TTCTCGCCGGGATGAGAAAA+AGG 0.329763 4.1:-3368114 None:intergenic
CCGGAGTAGTTATACTTTCT+CGG 0.332203 4.1:-3368153 None:intergenic
TGGAATCTGGAAGAGATATA+AGG 0.338125 4.1:+3368793 MS.gene049038:CDS
TAATGGATCGGGTTCAGGTT+CGG 0.338161 4.1:+3368854 MS.gene049038:CDS
TGTTGGGTGGGTTTCGGAGC+TGG 0.339180 4.1:+3368899 MS.gene049038:CDS
CGCATGGTGTGTTCGAGTGC+TGG 0.340661 4.1:+3368235 MS.gene049038:CDS
TAATCGTCGTTGGAGGTTAA+AGG 0.353804 4.1:-3367898 None:intergenic
GCCGTTGGATTGTTCATTGT+TGG 0.354051 4.1:-3367862 None:intergenic
GACCGAGTCATCGGAGTAAT+CGG 0.354759 4.1:-3368507 None:intergenic
CAAATGGGTTCTCCTAGATT+CGG 0.355364 4.1:+3368633 MS.gene049038:CDS
TTCTTCATGGAATGTTCAAA+TGG 0.360051 4.1:+3368617 MS.gene049038:CDS
TACTCCGATGACTCGGTCCT+TGG 0.371166 4.1:+3368512 MS.gene049038:CDS
CGTATGACGGTTCTCCTCTC+AGG 0.385313 4.1:+3368397 MS.gene049038:CDS
CGTAAAGGAAGTTGCAAGAA+AGG 0.403608 4.1:+3368195 MS.gene049038:CDS
ACAAACTGGCCGGCGACAAC+TGG 0.411554 4.1:-3368301 None:intergenic
TTGTTCATTGTTGGCCATGC+TGG 0.418920 4.1:-3367853 None:intergenic
GTGATGGAGAGGGTGGAATC+TGG 0.428735 4.1:+3368780 MS.gene049038:CDS
TGAAGAAGGTAATGACTTCA+TGG 0.429121 4.1:-3368601 None:intergenic
TCCTCCTGGATCGGTTTCTC+CGG 0.431746 4.1:+3368464 MS.gene049038:CDS
GAGCTGGTGAGCCCTTTCTT+GGG 0.442916 4.1:+3368915 MS.gene049038:CDS
ACACCGCCGCCATGATGTTA+GGG 0.445475 4.1:+3367794 None:intergenic
CGGAGTAGTTATACTTTCTC+GGG 0.448222 4.1:-3368152 None:intergenic
CCTCTGGGAGACCCGAATCT+AGG 0.450232 4.1:-3368645 None:intergenic
GGGTGAAGTGGTTGAAGATC+CGG 0.455522 4.1:+3368875 MS.gene049038:CDS
CAGAATCCGGGTCGGATCAC+GGG 0.457628 4.1:-3368669 None:intergenic
AACATTCAATCACCCAAGAA+AGG 0.463244 4.1:-3368927 None:intergenic
TTCGGCGATGCGCACGTGGC+AGG 0.465958 4.1:+3368070 MS.gene049038:CDS
CTTCCGTTCATGTCTCCTCC+TGG 0.466787 4.1:+3368450 MS.gene049038:CDS
TCCGAAACCCACCCAACATC+CGG 0.467976 4.1:-3368894 None:intergenic
ATCAACGCAGTGCACACTCC+GGG 0.469752 4.1:-3368373 None:intergenic
GTTCATGTCTCCTCCTGGAT+CGG 0.471938 4.1:+3368455 MS.gene049038:CDS
GGAATCTGGAAGAGATATAA+GGG 0.473052 4.1:+3368794 MS.gene049038:CDS
TCACACGGCGGAGCAACTTA+GGG 0.475617 4.1:+3368332 MS.gene049038:CDS
ACTCCGATGACTCGGTCCTT+GGG 0.476813 4.1:+3368513 MS.gene049038:CDS
ATTTGAACATTCCATGAAGA+AGG 0.481692 4.1:-3368615 None:intergenic
CGGCGGCGAGCTTTCTCGCC+GGG 0.483303 4.1:-3368126 None:intergenic
CGCAGGTGCCGAGTCGTGGT+AGG 0.483561 4.1:+3368712 MS.gene049038:CDS
GGTCGGATCACGGGTCCTCT+GGG 0.485156 4.1:-3368660 None:intergenic
CGTCTTTACACGGCTGAGTA+CGG 0.485485 4.1:-3368275 None:intergenic
TCTTCATGGAATGTTCAAAT+GGG 0.500081 4.1:+3368618 MS.gene049038:CDS
CTCCGACTCAACAGAGTCCC+CGG 0.512371 4.1:+3368355 MS.gene049038:CDS
TCGGTCCTTGGGAAGATCTG+TGG 0.513782 4.1:+3368524 MS.gene049038:CDS
TCCACCGGAGAAACCGATCC+AGG 0.514556 4.1:-3368468 None:intergenic
TGGTTGAAGATCCGGATGTT+GGG 0.514839 4.1:+3368883 MS.gene049038:CDS
ACAGAATCCGGGTCGGATCA+CGG 0.517668 4.1:-3368670 None:intergenic
TTCTAGCTCTGTGAATGAAA+TGG 0.520762 4.1:+3368548 MS.gene049038:CDS
TCCTGGATCGGTTTCTCCGG+TGG 0.521510 4.1:+3368467 MS.gene049038:CDS
ACGGCGGCGAGCTTTCTCGC+CGG 0.522012 4.1:-3368127 None:intergenic
GATTCCACCCTCTCCATCAC+AGG 0.523810 4.1:-3368777 None:intergenic
CGGTCCTTGGGAAGATCTGT+GGG 0.525368 4.1:+3368525 MS.gene049038:CDS
TTGAAGATCCGGATGTTGGG+TGG 0.525953 4.1:+3368886 MS.gene049038:CDS
CACGTGGCAGGTCACATGAC+TGG 0.526588 4.1:+3368082 MS.gene049038:CDS
CTTCCCAAGGACCGAGTCAT+CGG 0.527368 4.1:-3368516 None:intergenic
AAAATCAGGACACGAAGTGC+CGG 0.531042 4.1:-3368172 None:intergenic
GCATGTTCGAGTTTAAGATT+CGG 0.531245 4.1:+3368052 MS.gene049038:CDS
ACATTCAATCACCCAAGAAA+GGG 0.534836 4.1:-3368926 None:intergenic
CTCCGGGGACTCTGTTGAGT+CGG 0.537123 4.1:-3368357 None:intergenic
AAATGGGTTCTCCTAGATTC+GGG 0.537187 4.1:+3368634 MS.gene049038:CDS
AGTTATACTTTCTCGGGTCA+CGG 0.538971 4.1:-3368146 None:intergenic
CCTGCGTAGGTGTCGTTGGT+AGG 0.548899 4.1:-3368695 None:intergenic
CAACTGGTTCCGTCTTTACA+CGG 0.558745 4.1:-3368285 None:intergenic
CGTACTCAGCCGTGTAAAGA+CGG 0.559308 4.1:+3368276 MS.gene049038:CDS
TGAAGATCCGGATGTTGGGT+GGG 0.561336 4.1:+3368887 MS.gene049038:CDS
CTCCGATTACTCCGATGACT+CGG 0.561730 4.1:+3368505 MS.gene049038:CDS
GGGTTCAGGTTCGGGTGAAG+TGG 0.562356 4.1:+3368863 MS.gene049038:CDS
GTGGTTGAAGATCCGGATGT+TGG 0.565014 4.1:+3368882 MS.gene049038:CDS
AGGTGGTTCCCCTAACATCA+TGG 0.567452 4.1:-3367803 None:intergenic
GACTCAATAGCAAGCCTGAG+AGG 0.570639 4.1:-3368411 None:intergenic
GTTGGATTTGTACGATGAGG+TGG 0.581590 4.1:-3367820 None:intergenic
TGGCCATGCTGGAACGTGTA+CGG 0.582344 4.1:-3367842 None:intergenic
AATCAACGCAGTGCACACTC+CGG 0.582408 4.1:-3368374 None:intergenic
TCTCTGAGAAACTTACAACT+TGG 0.583296 4.1:+3368576 MS.gene049038:CDS
AGGAAGAGCCTGTGATGGAG+AGG 0.585551 4.1:+3368769 MS.gene049038:CDS
GGCACCTGCGTAGGTGTCGT+TGG 0.587787 4.1:-3368699 None:intergenic
CACTGCGTTGATTCGTATGA+CGG 0.588289 4.1:+3368384 MS.gene049038:CDS
CTGAGGATAATCGTCGTTGG+AGG 0.595113 4.1:-3367905 None:intergenic
CGACGACACCGATTCCGACT+CGG 0.598832 4.1:+3367978 MS.gene049038:CDS
AGAGGACCCGTGATCCGACC+CGG 0.601883 4.1:+3368663 MS.gene049038:CDS
GTTGGTAGGCTACAGAATCC+GGG 0.603145 4.1:-3368681 None:intergenic
TTGCGAGGAAGAGCCTGTGA+TGG 0.605419 4.1:+3368764 MS.gene049038:CDS
TGATTAACCCTACCACGACT+CGG 0.606063 4.1:-3368720 None:intergenic
GCAGGTGCCGAGTCGTGGTA+GGG 0.610663 4.1:+3368713 MS.gene049038:CDS
GAACTGAGGATAATCGTCGT+TGG 0.611416 4.1:-3367908 None:intergenic
CACCGCCGCCATGATGTTAG+GGG 0.612627 4.1:+3367795 None:intergenic
AGAGCCTGTGATGGAGAGGG+TGG 0.613302 4.1:+3368773 MS.gene049038:CDS
AAGACGGAACCAGTTGTCGC+CGG 0.615571 4.1:+3368292 MS.gene049038:CDS
CCACGACTCGGCACCTGCGT+AGG 0.618584 4.1:-3368708 None:intergenic
AAGATTCGGCGATGCGCACG+TGG 0.619291 4.1:+3368066 MS.gene049038:CDS
GAATCCACCGATTCATGACT+CGG 0.619620 4.1:-3368009 None:intergenic
TAGCTCTGTGAATGAAATGG+TGG 0.623336 4.1:+3368551 MS.gene049038:CDS
CCGAGAAAGTATAACTACTC+CGG 0.623467 4.1:+3368153 MS.gene049038:CDS
GGAAGAGCCTGTGATGGAGA+GGG 0.627453 4.1:+3368770 MS.gene049038:CDS
GATTCGTGTGAGTTTGCGCA+TGG 0.630448 4.1:+3368219 MS.gene049038:CDS
CCTACGCAGGTGCCGAGTCG+TGG 0.632046 4.1:+3368708 MS.gene049038:CDS
ATCGGAGTAATCGGAGACAT+CGG 0.633731 4.1:-3368498 None:intergenic
GGCTGAGTACGGTAACGAGA+AGG 0.636999 4.1:-3368264 None:intergenic
GCCAACAATGAACAATCCAA+CGG 0.640124 4.1:+3367861 MS.gene049038:CDS
GGAGTAATCGGAGACATCGG+AGG 0.641390 4.1:-3368495 None:intergenic
TGGCAGGTCACATGACTGGA+CGG 0.644811 4.1:+3368086 MS.gene049038:CDS
CAACCGTACACGTTCCAGCA+TGG 0.649929 4.1:+3367839 MS.gene049038:CDS
CATGCTGGAACGTGTACGGT+TGG 0.652730 4.1:-3367838 None:intergenic
TCAACGCAGTGCACACTCCG+GGG 0.673364 4.1:-3368372 None:intergenic
GACATCGGAGGAGACTCCAC+CGG 0.675579 4.1:-3368483 None:intergenic
CCTAGATTCGGGTCTCCCAG+AGG 0.678542 4.1:+3368645 MS.gene049038:CDS
GATCCAGGAGGAGACATGAA+CGG 0.679198 4.1:-3368453 None:intergenic
GAATCTTAAACTCGAACATG+CGG 0.686731 4.1:-3368050 None:intergenic
GCTTCTTGCATGTAGAACTG+AGG 0.687997 4.1:-3367922 None:intergenic
AACAATGAACAATCCAACGG+CGG 0.692559 4.1:+3367864 MS.gene049038:CDS
ACCGGAGAAACCGATCCAGG+AGG 0.697000 4.1:-3368465 None:intergenic
GTAGGCTACAGAATCCGGGT+CGG 0.700260 4.1:-3368677 None:intergenic
AGAACCCACAGATCTTCCCA+AGG 0.706781 4.1:-3368529 None:intergenic
ACGGTTGGATTTGTACGATG+AGG 0.707900 4.1:-3367823 None:intergenic
CCTACCAACGACACCTACGC+AGG 0.710974 4.1:+3368695 MS.gene049038:CDS
TATACTTTCTCGGGTCACGG+CGG 0.737764 4.1:-3368143 None:intergenic
TCTGTGGGATCAGTGTTGCG+AGG 0.751725 4.1:+3368749 MS.gene049038:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATTTGAACATTCCATGAAGA+AGG - chr4.1:3368618-3368637 None:intergenic 30.0%
TCTTCATGGAATGTTCAAAT+GGG + chr4.1:3368618-3368637 MS.gene049038:CDS 30.0%
TTCTTCATGGAATGTTCAAA+TGG + chr4.1:3368617-3368636 MS.gene049038:CDS 30.0%
! AGCAAAGAGAACTCTTTTAA+TGG + chr4.1:3368837-3368856 MS.gene049038:CDS 30.0%
!! AGAGAACTCTTTTAATGGAT+CGG + chr4.1:3368842-3368861 MS.gene049038:CDS 30.0%
!! GGTTAATCATTTTGATCTGT+GGG + chr4.1:3368734-3368753 MS.gene049038:CDS 30.0%
CAACTTCCTTTACGAAAATC+AGG - chr4.1:3368189-3368208 None:intergenic 35.0%
GAATCTTAAACTCGAACATG+CGG - chr4.1:3368053-3368072 None:intergenic 35.0%
GGAATCTGGAAGAGATATAA+GGG + chr4.1:3368794-3368813 MS.gene049038:CDS 35.0%
TGAAGAAGGTAATGACTTCA+TGG - chr4.1:3368604-3368623 None:intergenic 35.0%
TGAAGTCATTACCTTCTTCA+TGG + chr4.1:3368604-3368623 MS.gene049038:CDS 35.0%
TGGAATCTGGAAGAGATATA+AGG + chr4.1:3368793-3368812 MS.gene049038:CDS 35.0%
! CGTTTTCGTTAACATAGTGT+TGG - chr4.1:3367960-3367979 None:intergenic 35.0%
! GATTTTTCCGAGTCATGAAT+CGG + chr4.1:3368002-3368021 MS.gene049038:CDS 35.0%
! GCATGTTCGAGTTTAAGATT+CGG + chr4.1:3368052-3368071 MS.gene049038:CDS 35.0%
! TCTCTGAGAAACTTACAACT+TGG + chr4.1:3368576-3368595 MS.gene049038:CDS 35.0%
!! GAGAACTCTTTTAATGGATC+GGG + chr4.1:3368843-3368862 MS.gene049038:CDS 35.0%
!! GGGTTAATCATTTTGATCTG+TGG + chr4.1:3368733-3368752 MS.gene049038:CDS 35.0%
!! TTCTAGCTCTGTGAATGAAA+TGG + chr4.1:3368548-3368567 MS.gene049038:CDS 35.0%
!!! AGTTTGTTTTTTCGCTCACA+CGG + chr4.1:3368317-3368336 MS.gene049038:CDS 35.0%
AAAAATCTCCGAGTCGGAAT+CGG - chr4.1:3367989-3368008 None:intergenic 40.0%
AACAATGAACAATCCAACGG+CGG + chr4.1:3367864-3367883 MS.gene049038:CDS 40.0%
AGTTATACTTTCTCGGGTCA+CGG - chr4.1:3368149-3368168 None:intergenic 40.0%
CCGGAGTAGTTATACTTTCT+CGG - chr4.1:3368156-3368175 None:intergenic 40.0%
CGGAGTAGTTATACTTTCTC+GGG - chr4.1:3368155-3368174 None:intergenic 40.0%
CGTAAAGGAAGTTGCAAGAA+AGG + chr4.1:3368195-3368214 MS.gene049038:CDS 40.0%
GCCAACAATGAACAATCCAA+CGG + chr4.1:3367861-3367880 MS.gene049038:CDS 40.0%
GTGTGAGCGAAAAAACAAAC+TGG - chr4.1:3368318-3368337 None:intergenic 40.0%
TAATCGTCGTTGGAGGTTAA+AGG - chr4.1:3367901-3367920 None:intergenic 40.0%
! AAATGGGTTCTCCTAGATTC+GGG + chr4.1:3368634-3368653 MS.gene049038:CDS 40.0%
! CAAATGGGTTCTCCTAGATT+CGG + chr4.1:3368633-3368652 MS.gene049038:CDS 40.0%
! CCGAGAAAGTATAACTACTC+CGG + chr4.1:3368153-3368172 MS.gene049038:CDS 40.0%
! TAGCTCTGTGAATGAAATGG+TGG + chr4.1:3368551-3368570 MS.gene049038:CDS 40.0%
! TCGTGTCCTGATTTTCGTAA+AGG + chr4.1:3368180-3368199 MS.gene049038:CDS 40.0%
!! TCTTTTAATGGATCGGGTTC+AGG + chr4.1:3368849-3368868 MS.gene049038:CDS 40.0%
AAAATCAGGACACGAAGTGC+CGG - chr4.1:3368175-3368194 None:intergenic 45.0%
ACGGTTGGATTTGTACGATG+AGG - chr4.1:3367826-3367845 None:intergenic 45.0%
ACTCGGAAAAATCTCCGAGT+CGG - chr4.1:3367995-3368014 None:intergenic 45.0%
ATCGGAGTAATCGGAGACAT+CGG - chr4.1:3368501-3368520 None:intergenic 45.0%
GAACTGAGGATAATCGTCGT+TGG - chr4.1:3367911-3367930 None:intergenic 45.0%
GAGCGAAAAAACAAACTGGC+CGG - chr4.1:3368314-3368333 None:intergenic 45.0%
GCCGTTGGATTGTTCATTGT+TGG - chr4.1:3367865-3367884 None:intergenic 45.0%
GCTTCTTGCATGTAGAACTG+AGG - chr4.1:3367925-3367944 None:intergenic 45.0%
GTTGGATTTGTACGATGAGG+TGG - chr4.1:3367823-3367842 None:intergenic 45.0%
TGATTAACCCTACCACGACT+CGG - chr4.1:3368723-3368742 None:intergenic 45.0%
TGGTTGAAGATCCGGATGTT+GGG + chr4.1:3368883-3368902 MS.gene049038:CDS 45.0%
TTGTTCATTGTTGGCCATGC+TGG - chr4.1:3367856-3367875 None:intergenic 45.0%
! CAACTGGTTCCGTCTTTACA+CGG - chr4.1:3368288-3368307 None:intergenic 45.0%
! GAACGGAAGAGTTTTCACAC+AGG - chr4.1:3368439-3368458 None:intergenic 45.0%
! GAGTGTCCTTTTTCTCATCC+CGG + chr4.1:3368108-3368127 MS.gene049038:CDS 45.0%
! TAATGGATCGGGTTCAGGTT+CGG + chr4.1:3368854-3368873 MS.gene049038:CDS 45.0%
! TTTTCCGAGTCATGAATCGG+TGG + chr4.1:3368005-3368024 MS.gene049038:CDS 45.0%
!! CACTGCGTTGATTCGTATGA+CGG + chr4.1:3368384-3368403 MS.gene049038:CDS 45.0%
!! GAATCCACCGATTCATGACT+CGG - chr4.1:3368012-3368031 None:intergenic 45.0%
!!! TTGTTTTTTCGCTCACACGG+CGG + chr4.1:3368320-3368339 MS.gene049038:CDS 45.0%
AATCAACGCAGTGCACACTC+CGG - chr4.1:3368377-3368396 None:intergenic 50.0%
AGAACCCACAGATCTTCCCA+AGG - chr4.1:3368532-3368551 None:intergenic 50.0%
CGTACTCAGCCGTGTAAAGA+CGG + chr4.1:3368276-3368295 MS.gene049038:CDS 50.0%
CGTCTTTACACGGCTGAGTA+CGG - chr4.1:3368278-3368297 None:intergenic 50.0%
CTCCGATTACTCCGATGACT+CGG + chr4.1:3368505-3368524 MS.gene049038:CDS 50.0%
CTGAGGATAATCGTCGTTGG+AGG - chr4.1:3367908-3367927 None:intergenic 50.0%
GACCGAGTCATCGGAGTAAT+CGG - chr4.1:3368510-3368529 None:intergenic 50.0%
GACTCAATAGCAAGCCTGAG+AGG - chr4.1:3368414-3368433 None:intergenic 50.0%
GATCCAGGAGGAGACATGAA+CGG - chr4.1:3368456-3368475 None:intergenic 50.0%
GATTCGTGTGAGTTTGCGCA+TGG + chr4.1:3368219-3368238 MS.gene049038:CDS 50.0%
GGGTGAAGTGGTTGAAGATC+CGG + chr4.1:3368875-3368894 MS.gene049038:CDS 50.0%
GGTGAAAAAATCTCCGCCGT+TGG - chr4.1:3367880-3367899 None:intergenic 50.0%
GTGGTTGAAGATCCGGATGT+TGG + chr4.1:3368882-3368901 MS.gene049038:CDS 50.0%
GTTCATGTCTCCTCCTGGAT+CGG + chr4.1:3368455-3368474 MS.gene049038:CDS 50.0%
TATACTTTCTCGGGTCACGG+CGG - chr4.1:3368146-3368165 None:intergenic 50.0%
TGAAGATCCGGATGTTGGGT+GGG + chr4.1:3368887-3368906 MS.gene049038:CDS 50.0%
TTCTCGCCGGGATGAGAAAA+AGG - chr4.1:3368117-3368136 None:intergenic 50.0%
TTGAAGATCCGGATGTTGGG+TGG + chr4.1:3368886-3368905 MS.gene049038:CDS 50.0%
! AATGGATCGGGTTCAGGTTC+GGG + chr4.1:3368855-3368874 MS.gene049038:CDS 50.0%
! CGTTGGTAGGCTACAGAATC+CGG - chr4.1:3368685-3368704 None:intergenic 50.0%
! GTTGGTAGGCTACAGAATCC+GGG - chr4.1:3368684-3368703 None:intergenic 50.0%
AAGACGGAACCAGTTGTCGC+CGG + chr4.1:3368292-3368311 MS.gene049038:CDS 55.0%
ACAGAATCCGGGTCGGATCA+CGG - chr4.1:3368673-3368692 None:intergenic 55.0%
ATCAACGCAGTGCACACTCC+GGG - chr4.1:3368376-3368395 None:intergenic 55.0%
CAACCGTACACGTTCCAGCA+TGG + chr4.1:3367839-3367858 MS.gene049038:CDS 55.0%
CATGCTGGAACGTGTACGGT+TGG - chr4.1:3367841-3367860 None:intergenic 55.0%
CGGTCCTTGGGAAGATCTGT+GGG + chr4.1:3368525-3368544 MS.gene049038:CDS 55.0%
CGTATGACGGTTCTCCTCTC+AGG + chr4.1:3368397-3368416 MS.gene049038:CDS 55.0%
CTTCCCAAGGACCGAGTCAT+CGG - chr4.1:3368519-3368538 None:intergenic 55.0%
CTTCCGTTCATGTCTCCTCC+TGG + chr4.1:3368450-3368469 MS.gene049038:CDS 55.0%
GAGCTGGTGAGCCCTTTCTT+GGG + chr4.1:3368915-3368934 MS.gene049038:CDS 55.0%
GATTCCACCCTCTCCATCAC+AGG - chr4.1:3368780-3368799 None:intergenic 55.0%
GGAGTAATCGGAGACATCGG+AGG - chr4.1:3368498-3368517 None:intergenic 55.0%
GGCTGAGTACGGTAACGAGA+AGG - chr4.1:3368267-3368286 None:intergenic 55.0%
GTAGGCTACAGAATCCGGGT+CGG - chr4.1:3368680-3368699 None:intergenic 55.0%
TCACACGGCGGAGCAACTTA+GGG + chr4.1:3368332-3368351 MS.gene049038:CDS 55.0%
TCCGAAACCCACCCAACATC+CGG - chr4.1:3368897-3368916 None:intergenic 55.0%
TCGGTCCTTGGGAAGATCTG+TGG + chr4.1:3368524-3368543 MS.gene049038:CDS 55.0%
TCTGTGGGATCAGTGTTGCG+AGG + chr4.1:3368749-3368768 MS.gene049038:CDS 55.0%
TGGCAGGTCACATGACTGGA+CGG + chr4.1:3368086-3368105 MS.gene049038:CDS 55.0%
TGGCCATGCTGGAACGTGTA+CGG - chr4.1:3367845-3367864 None:intergenic 55.0%
TTGCGAGGAAGAGCCTGTGA+TGG + chr4.1:3368764-3368783 MS.gene049038:CDS 55.0%
! AGGAAGAGCCTGTGATGGAG+AGG + chr4.1:3368769-3368788 MS.gene049038:CDS 55.0%
! GGAAGAGCCTGTGATGGAGA+GGG + chr4.1:3368770-3368789 MS.gene049038:CDS 55.0%
! GTGATGGAGAGGGTGGAATC+TGG + chr4.1:3368780-3368799 MS.gene049038:CDS 55.0%
! TCCGGATGTTGGGTGGGTTT+CGG + chr4.1:3368893-3368912 MS.gene049038:CDS 55.0%
! TCCTCCTGGATCGGTTTCTC+CGG + chr4.1:3368464-3368483 MS.gene049038:CDS 55.0%
!! ACTCCGATGACTCGGTCCTT+GGG + chr4.1:3368513-3368532 MS.gene049038:CDS 55.0%
!! TACTCCGATGACTCGGTCCT+TGG + chr4.1:3368512-3368531 MS.gene049038:CDS 55.0%
AAGATTCGGCGATGCGCACG+TGG + chr4.1:3368066-3368085 MS.gene049038:CDS 60.0%
ACAAACTGGCCGGCGACAAC+TGG - chr4.1:3368304-3368323 None:intergenic 60.0%
ACCGGAGAAACCGATCCAGG+AGG - chr4.1:3368468-3368487 None:intergenic 60.0%
CACGTGGCAGGTCACATGAC+TGG + chr4.1:3368082-3368101 MS.gene049038:CDS 60.0%
CAGAATCCGGGTCGGATCAC+GGG - chr4.1:3368672-3368691 None:intergenic 60.0%
CCTACCAACGACACCTACGC+AGG + chr4.1:3368695-3368714 MS.gene049038:CDS 60.0%
CCTAGATTCGGGTCTCCCAG+AGG + chr4.1:3368645-3368664 MS.gene049038:CDS 60.0%
CGCATGGTGTGTTCGAGTGC+TGG + chr4.1:3368235-3368254 MS.gene049038:CDS 60.0%
CTCACACGGCGGAGCAACTT+AGG + chr4.1:3368331-3368350 MS.gene049038:CDS 60.0%
CTCCGACTCAACAGAGTCCC+CGG + chr4.1:3368355-3368374 MS.gene049038:CDS 60.0%
CTCCGGGGACTCTGTTGAGT+CGG - chr4.1:3368360-3368379 None:intergenic 60.0%
GACATCGGAGGAGACTCCAC+CGG - chr4.1:3368486-3368505 None:intergenic 60.0%
GGAGCTGGTGAGCCCTTTCT+TGG + chr4.1:3368914-3368933 MS.gene049038:CDS 60.0%
TCAACGCAGTGCACACTCCG+GGG - chr4.1:3368375-3368394 None:intergenic 60.0%
TCCACCGGAGAAACCGATCC+AGG - chr4.1:3368471-3368490 None:intergenic 60.0%
! AGAGCCTGTGATGGAGAGGG+TGG + chr4.1:3368773-3368792 MS.gene049038:CDS 60.0%
! CCTCTGGGAGACCCGAATCT+AGG - chr4.1:3368648-3368667 None:intergenic 60.0%
! GGGTTCAGGTTCGGGTGAAG+TGG + chr4.1:3368863-3368882 MS.gene049038:CDS 60.0%
! TCCTGGATCGGTTTCTCCGG+TGG + chr4.1:3368467-3368486 MS.gene049038:CDS 60.0%
! TGTTGGGTGGGTTTCGGAGC+TGG + chr4.1:3368899-3368918 MS.gene049038:CDS 60.0%
!! CCTGCGTAGGTGTCGTTGGT+AGG - chr4.1:3368698-3368717 None:intergenic 60.0%
!! CGACGACACCGATTCCGACT+CGG + chr4.1:3367978-3367997 MS.gene049038:CDS 60.0%
AGAGGACCCGTGATCCGACC+CGG + chr4.1:3368663-3368682 MS.gene049038:CDS 65.0%
GGTCGGATCACGGGTCCTCT+GGG - chr4.1:3368663-3368682 None:intergenic 65.0%
! GGCACCTGCGTAGGTGTCGT+TGG - chr4.1:3368702-3368721 None:intergenic 65.0%
!! GCAGGTGCCGAGTCGTGGTA+GGG + chr4.1:3368713-3368732 MS.gene049038:CDS 65.0%
ACGGCGGCGAGCTTTCTCGC+CGG - chr4.1:3368130-3368149 None:intergenic 70.0%
GGGTCGGATCACGGGTCCTC+TGG - chr4.1:3368664-3368683 None:intergenic 70.0%
TTCGGCGATGCGCACGTGGC+AGG + chr4.1:3368070-3368089 MS.gene049038:CDS 70.0%
! CCACGACTCGGCACCTGCGT+AGG - chr4.1:3368711-3368730 None:intergenic 70.0%
!! CCTACGCAGGTGCCGAGTCG+TGG + chr4.1:3368708-3368727 MS.gene049038:CDS 70.0%
!! CGCAGGTGCCGAGTCGTGGT+AGG + chr4.1:3368712-3368731 MS.gene049038:CDS 70.0%
CGGCGGCGAGCTTTCTCGCC+GGG - chr4.1:3368129-3368148 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 3367805 3368944 3367805 ID=MS.gene049038
chr4.1 mRNA 3367805 3368944 3367805 ID=MS.gene049038.t1;Parent=MS.gene049038
chr4.1 exon 3367805 3368944 3367805 ID=MS.gene049038.t1.exon1;Parent=MS.gene049038.t1
chr4.1 CDS 3367805 3368944 3367805 ID=cds.MS.gene049038.t1;Parent=MS.gene049038.t1
Gene Sequence

>MS.gene049038

ATGATGTTAGGGGAACCACCTCATCGTACAAATCCAACCGTACACGTTCCAGCATGGCCAACAATGAACAATCCAACGGCGGAGATTTTTTCACCTTTAACCTCCAACGACGATTATCCTCAGTTCTACATGCAAGAAGCACTAAGCGCTTTCCAACACTATGTTAACGAAAACGACGACACCGATTCCGACTCGGAGATTTTTCCGAGTCATGAATCGGTGGATTCGTATTCTAACGATCATTTCCGCATGTTCGAGTTTAAGATTCGGCGATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCTTTTTCTCATCCCGGCGAGAAAGCTCGCCGCCGTGACCCGAGAAAGTATAACTACTCCGGCACTTCGTGTCCTGATTTTCGTAAAGGAAGTTGCAAGAAAGGTGATTCGTGTGAGTTTGCGCATGGTGTGTTCGAGTGCTGGCTTCATCCTTCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACCAGTTGTCGCCGGCCAGTTTGTTTTTTCGCTCACACGGCGGAGCAACTTAGGGCTCCGACTCAACAGAGTCCCCGGAGTGTGCACTGCGTTGATTCGTATGACGGTTCTCCTCTCAGGCTTGCTATTGAGTCTTCCTGTGTGAAAACTCTTCCGTTCATGTCTCCTCCTGGATCGGTTTCTCCGGTGGAGTCTCCTCCGATGTCTCCGATTACTCCGATGACTCGGTCCTTGGGAAGATCTGTGGGTTCTAGCTCTGTGAATGAAATGGTGGCTTCTCTGAGAAACTTACAACTTGGTACCATGAAGTCATTACCTTCTTCATGGAATGTTCAAATGGGTTCTCCTAGATTCGGGTCTCCCAGAGGACCCGTGATCCGACCCGGATTCTGTAGCCTACCAACGACACCTACGCAGGTGCCGAGTCGTGGTAGGGTTAATCATTTTGATCTGTGGGATCAGTGTTGCGAGGAAGAGCCTGTGATGGAGAGGGTGGAATCTGGAAGAGATATAAGGGTGAAGATGTTTGAGAAACTGAGCAAAGAGAACTCTTTTAATGGATCGGGTTCAGGTTCGGGTGAAGTGGTTGAAGATCCGGATGTTGGGTGGGTTTCGGAGCTGGTGAGCCCTTTCTTGGGTGATTGA
Protein sequence

>MS.gene049038.t1

MMLGEPPHRTNPTVHVPAWPTMNNPTAEIFSPLTSNDDYPQFYMQEALSAFQHYVNENDDTDSDSEIFPSHESVDSYSNDHFRMFEFKIRRCARGRSHDWTECPFSHPGEKARRRDPRKYNYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRPVCFFAHTAEQLRAPTQQSPRSVHCVDSYDGSPLRLAIESSCVKTLPFMSPPGSVSPVESPPMSPITPMTRSLGRSVGSSSVNEMVASLRNLQLGTMKSLPSSWNVQMGSPRFGSPRGPVIRPGFCSLPTTPTQVPSRGRVNHFDLWDQCCEEEPVMERVESGRDIRVKMFEKLSKENSFNGSGSGSGEVVEDPDVGWVSELVSPFLGD