AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049206

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049206.t1 MTR_3g098070 63.636 275 56 1 14 244 16 290 1.62e-123 355
MS.gene049206.t1 MTR_3g098070 63.636 275 56 1 14 244 16 290 6.01e-122 357
MS.gene049206.t1 MTR_8g095440 58.182 275 71 1 14 244 17 291 2.36e-109 322
MS.gene049206.t1 MTR_8g095440 58.182 275 71 1 14 244 17 291 5.70e-108 321
MS.gene049206.t1 MTR_3g098090 58.182 275 71 1 14 244 19 293 9.16e-106 315
MS.gene049206.t1 MTR_1g096490 54.015 274 82 1 15 244 18 291 1.91e-98 297
MS.gene049206.t1 MTR_1g041150 51.460 274 89 1 15 244 106 379 2.91e-92 283
MS.gene049206.t1 MTR_5g099240 50.000 278 95 1 11 244 8 285 2.98e-90 275
MS.gene049206.t1 MTR_5g099240 50.000 278 95 1 11 244 80 357 2.29e-89 275
MS.gene049206.t1 MTR_5g092810 47.782 293 109 1 10 258 75 367 1.32e-87 270
MS.gene049206.t1 MTR_1g054865 49.815 271 92 1 15 241 149 419 5.34e-87 270
MS.gene049206.t1 MTR_1g055255 49.306 288 102 1 15 258 112 399 1.43e-86 269
MS.gene049206.t1 MTR_3g051770 48.611 288 97 2 7 243 57 344 5.83e-86 266
MS.gene049206.t1 MTR_5g092815 49.275 276 96 1 21 252 85 360 1.77e-85 260
MS.gene049206.t1 MTR_7g106730 47.331 281 104 1 23 259 84 364 2.18e-85 260
MS.gene049206.t1 MTR_4g132070 49.814 269 89 2 17 241 83 349 4.32e-85 264
MS.gene049206.t1 MTR_0028s0170 47.703 283 100 2 10 244 57 339 2.06e-84 262
MS.gene049206.t1 MTR_5g089320 46.643 283 103 2 10 244 47 329 1.90e-83 259
MS.gene049206.t1 MTR_1g052530 44.710 293 113 2 5 253 35 322 1.16e-82 254
MS.gene049206.t1 MTR_4g107490 49.077 271 94 1 27 253 73 343 1.97e-82 257
MS.gene049206.t1 MTR_7g091890 46.125 271 102 1 27 253 58 328 2.60e-82 253
MS.gene049206.t1 MTR_1g026190 47.535 284 99 3 17 252 70 351 6.62e-82 255
MS.gene049206.t1 MTR_1g052530 44.710 293 113 2 5 253 35 322 1.36e-81 254
MS.gene049206.t1 MTR_7g091890 46.125 271 102 1 27 253 58 328 7.48e-81 253
MS.gene049206.t1 MTR_7g106710 47.744 266 95 1 23 244 131 396 1.00e-79 247
MS.gene049206.t1 MTR_8g099095 46.099 282 108 1 21 258 60 341 1.62e-79 249
MS.gene049206.t1 MTR_7g106710 47.744 266 95 1 23 244 131 396 3.82e-79 247
MS.gene049206.t1 MTR_7g068710 45.552 281 109 1 5 241 34 314 4.41e-79 248
MS.gene049206.t1 MTR_7g106710 47.909 263 93 1 23 241 131 393 2.15e-78 247
MS.gene049206.t1 MTR_7g106710 47.909 263 93 1 23 241 131 393 5.77e-78 247
MS.gene049206.t1 MTR_5g009830 45.804 286 109 2 5 244 43 328 3.11e-73 230
MS.gene049206.t1 MTR_5g009830 45.804 286 109 2 5 244 43 328 1.38e-72 231
MS.gene049206.t1 MTR_4g066660 44.402 259 100 1 27 241 72 330 5.70e-71 227
MS.gene049206.t1 MTR_4g132040 42.424 297 126 2 7 258 75 371 2.79e-68 220
MS.gene049206.t1 MTR_5g022030 37.546 269 122 2 19 241 91 359 6.90e-58 192
MS.gene049206.t1 MTR_5g022030 37.546 269 122 2 19 241 91 359 1.08e-57 193
MS.gene049206.t1 MTR_1g101630 40.076 262 113 1 27 244 41 302 1.73e-56 188
MS.gene049206.t1 MTR_3g099767 36.296 270 124 2 27 255 112 374 3.18e-53 179
MS.gene049206.t1 MTR_5g017830 35.165 273 125 4 19 241 126 396 3.51e-50 173
MS.gene049206.t1 MTR_8g079790 35.088 285 125 5 19 250 117 394 3.23e-49 171
MS.gene049206.t1 MTR_3g092230 34.420 276 133 3 19 246 130 405 4.40e-48 167
MS.gene049206.t1 MTR_7g118020 34.058 276 130 4 19 244 136 409 1.33e-46 164
MS.gene049206.t1 MTR_4g086660 35.055 271 128 4 19 241 129 399 1.33e-46 164
MS.gene049206.t1 MTR_7g089480 34.182 275 129 4 19 243 133 405 4.18e-46 162
MS.gene049206.t1 MTR_1g080020 34.884 258 125 3 27 242 9 265 6.04e-46 155
MS.gene049206.t1 MTR_7g116390 33.969 262 125 6 27 242 16 275 1.20e-39 139
MS.gene049206.t1 MTR_1g026075 52.800 125 53 1 12 136 65 183 2.76e-39 137
MS.gene049206.t1 MTR_8g043970 28.435 313 144 6 18 250 3 315 1.09e-32 125
MS.gene049206.t1 MTR_6g012990 31.418 261 131 5 23 240 15 270 3.53e-32 121
MS.gene049206.t1 MTR_6g048250 30.798 263 134 5 23 242 15 272 1.16e-31 120
MS.gene049206.t1 MTR_6g012990 31.418 261 131 5 23 240 15 270 3.37e-31 120
MS.gene049206.t1 MTR_6g048250 30.451 266 137 5 20 242 12 272 5.81e-31 119
MS.gene049206.t1 MTR_4g131060 30.000 260 130 7 27 240 18 271 6.15e-31 119
MS.gene049206.t1 MTR_6g048250 30.798 263 134 5 23 242 15 272 8.76e-31 119
MS.gene049206.t1 MTR_3g110405 28.014 282 152 7 3 244 21 291 1.81e-29 112
MS.gene049206.t1 MTR_5g067150 27.413 259 137 5 27 240 9 261 1.06e-28 112
MS.gene049206.t1 MTR_5g067150 27.413 259 137 5 27 240 9 261 1.31e-28 112
MS.gene049206.t1 MTR_5g067150 27.413 259 137 5 27 240 9 261 2.03e-28 112
MS.gene049206.t1 MTR_2g045470 26.923 260 139 5 27 240 20 274 2.24e-28 112
MS.gene049206.t1 MTR_5g088350 29.434 265 136 6 26 244 12 271 5.16e-28 109
MS.gene049206.t1 MTR_4g114670 26.939 245 143 5 27 240 11 250 5.45e-28 111
MS.gene049206.t1 MTR_5g088350 29.434 265 136 6 26 244 12 271 1.17e-27 110
MS.gene049206.t1 MTR_8g040300 26.437 261 149 4 27 247 10 267 2.25e-27 106
MS.gene049206.t1 MTR_5g088350 29.434 265 136 6 26 244 12 271 2.46e-27 109
MS.gene049206.t1 MTR_8g024590 29.457 258 133 5 27 240 17 269 2.86e-27 109
MS.gene049206.t1 MTR_5g075100 28.077 260 136 5 27 240 23 277 3.32e-27 109
MS.gene049206.t1 MTR_8g035890 26.718 262 149 4 27 248 16 274 5.09e-27 105
MS.gene049206.t1 MTR_4g006970 30.000 260 130 6 27 240 20 273 6.88e-27 108
MS.gene049206.t1 MTR_3g099920 27.715 267 139 7 20 240 12 270 7.35e-27 108
MS.gene049206.t1 MTR_2g049790 28.077 260 136 5 27 240 23 277 1.47e-26 107
MS.gene049206.t1 MTR_3g466400 27.675 271 144 6 27 251 14 278 1.50e-26 107
MS.gene049206.t1 MTR_4g114670 25.581 258 143 5 27 240 11 263 2.13e-26 106
MS.gene049206.t1 MTR_4g114670 25.581 258 143 5 27 240 11 263 3.62e-26 106
MS.gene049206.t1 MTR_4g123940 26.766 269 146 5 27 249 26 289 1.69e-25 103
MS.gene049206.t1 MTR_4g123940 26.766 269 146 5 27 249 26 289 4.52e-25 103
MS.gene049206.t1 MTR_4g029020 28.626 262 135 7 25 240 10 265 1.08e-24 102
MS.gene049206.t1 MTR_1g040875 28.571 259 136 4 27 240 24 278 1.13e-24 102
MS.gene049206.t1 MTR_1g103760 26.923 260 138 6 27 240 12 265 1.41e-24 102
MS.gene049206.t1 MTR_1g076370 28.626 262 134 6 27 240 20 276 1.76e-24 101
MS.gene049206.t1 MTR_4g019410 26.820 261 142 7 27 241 19 276 2.10e-24 102
MS.gene049206.t1 MTR_8g024600 27.907 258 137 5 27 240 17 269 2.21e-24 101
MS.gene049206.t1 MTR_4g019410 26.820 261 142 7 27 241 19 276 3.98e-24 101
MS.gene049206.t1 MTR_7g072605 26.437 261 140 6 27 240 16 271 5.02e-24 100
MS.gene049206.t1 MTR_8g089975 27.798 277 148 7 27 256 4 275 3.39e-23 97.1
MS.gene049206.t1 MTR_7g072575 28.030 264 138 6 23 240 8 265 5.81e-23 97.4
MS.gene049206.t1 MTR_3g466480 27.308 260 137 6 27 240 21 274 2.03e-22 95.9
MS.gene049206.t1 MTR_2g016340 25.379 264 145 6 23 240 8 265 2.57e-22 95.5
MS.gene049206.t1 MTR_5g075060 27.481 262 138 6 25 240 10 265 4.80e-22 95.1
MS.gene049206.t1 MTR_6g012980 29.907 214 102 4 70 240 116 324 1.30e-21 93.6
MS.gene049206.t1 MTR_5g064540 29.167 264 133 7 27 242 4 261 1.62e-21 92.4
MS.gene049206.t1 MTR_2g006330 24.818 274 154 5 27 253 4 272 1.67e-21 92.4
MS.gene049206.t1 MTR_2g105010 30.000 260 130 6 27 240 14 267 2.32e-21 92.8
MS.gene049206.t1 MTR_3g097320 26.766 269 143 6 27 247 4 266 2.34e-21 92.0
MS.gene049206.t1 MTR_4g128820 26.820 261 143 5 27 244 10 265 3.96e-21 92.4
MS.gene049206.t1 MTR_1g013700 28.462 260 134 6 27 240 13 266 4.62e-21 92.0
MS.gene049206.t1 MTR_3g086940 26.894 264 141 7 27 243 5 263 5.02e-21 90.9
MS.gene049206.t1 MTR_8g095330 25.746 268 147 5 27 247 5 267 5.74e-21 90.9
MS.gene049206.t1 MTR_8g024100 26.316 266 148 5 27 246 15 278 1.49e-20 91.3
MS.gene049206.t1 MTR_2g094090 27.473 273 141 8 22 242 114 381 2.27e-18 84.0
MS.gene049206.t1 MTR_8g089975 28.643 199 95 4 105 256 1 199 2.84e-17 79.3
MS.gene049206.t1 MTR_2g045470 26.882 186 86 4 101 240 13 194 3.16e-17 80.9
MS.gene049206.t1 MTR_3g072320 26.482 253 138 7 27 236 12 259 6.20e-17 80.1
MS.gene049206.t1 MTR_2g006330 27.041 196 96 3 105 253 1 196 8.64e-17 78.2
MS.gene049206.t1 MTR_2g016280 25.652 230 142 7 27 240 31 247 2.13e-15 75.9
MS.gene049206.t1 MTR_3g088715 31.132 106 70 2 144 248 29 132 1.36e-13 66.6
MS.gene049206.t1 MTR_4g035835 41.071 112 59 4 137 243 940 1049 5.86e-13 68.9
MS.gene049206.t1 MTR_5g069000 40.870 115 55 5 137 243 944 1053 8.98e-13 68.2
MS.gene049206.t1 MTR_2g040150 36.893 103 62 2 144 243 320 422 2.89e-12 66.6
MS.gene049206.t1 MTR_3g104700 38.000 100 59 2 144 240 301 400 4.29e-12 65.9
MS.gene049206.t1 MTR_8g011780 33.654 104 63 2 139 241 245 343 9.46e-12 64.7
MS.gene049206.t1 MTR_1g075880 39.216 102 57 3 144 241 316 416 2.23e-11 63.9
MS.gene049206.t1 MTR_4g051648 35.714 112 68 3 131 241 154 262 3.97e-11 63.5
MS.gene049206.t1 MTR_1g442790 38.235 102 58 3 144 241 310 410 5.58e-11 62.8
MS.gene049206.t1 MTR_1g442790 38.235 102 58 3 144 241 310 410 7.40e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049206.t1 AT5G23580 54.355 287 87 1 10 252 5 291 2.61e-102 306
MS.gene049206.t1 AT1G35670 50.847 295 99 2 4 252 1 295 1.21e-95 290
MS.gene049206.t1 AT4G09570 51.903 289 93 2 10 252 6 294 1.48e-95 290
MS.gene049206.t1 AT3G10660 49.832 297 91 2 6 244 151 447 5.58e-94 290
MS.gene049206.t1 AT3G10660 49.832 297 91 2 6 244 151 447 5.58e-94 290
MS.gene049206.t1 AT5G04870 51.661 271 87 1 15 241 138 408 1.65e-93 287
MS.gene049206.t1 AT2G17290 49.474 285 100 1 4 244 62 346 3.29e-90 277
MS.gene049206.t1 AT2G17290 49.474 285 100 1 4 244 62 346 3.29e-90 277
MS.gene049206.t1 AT4G38230 50.000 278 95 1 11 244 8 285 7.52e-90 274
MS.gene049206.t1 AT4G38230 50.000 278 95 1 11 244 8 285 7.52e-90 274
MS.gene049206.t1 AT4G35310 50.360 278 94 1 11 244 81 358 1.13e-89 276
MS.gene049206.t1 AT4G35310 50.360 278 94 1 11 244 81 358 1.13e-89 276
MS.gene049206.t1 AT4G38230 50.000 278 95 1 11 244 38 315 1.84e-89 274
MS.gene049206.t1 AT1G76040 49.438 267 91 1 23 245 108 374 1.88e-88 271
MS.gene049206.t1 AT1G76040 49.438 267 91 1 23 245 108 374 5.28e-88 272
MS.gene049206.t1 AT2G35890 50.000 278 95 1 11 244 116 393 1.43e-87 270
MS.gene049206.t1 AT2G35890 50.000 278 95 1 11 244 116 393 1.43e-87 270
MS.gene049206.t1 AT2G38910 49.259 270 93 1 15 240 122 391 1.82e-87 271
MS.gene049206.t1 AT4G21940 49.057 265 91 1 21 241 96 360 1.37e-85 263
MS.gene049206.t1 AT1G61950 50.000 266 88 1 21 241 92 357 4.82e-85 264
MS.gene049206.t1 AT4G21940 49.057 265 91 1 21 241 96 360 5.53e-85 264
MS.gene049206.t1 AT4G21940 49.057 265 91 1 21 241 96 360 8.59e-85 263
MS.gene049206.t1 AT4G23650 47.902 286 105 1 11 252 62 347 2.92e-84 261
MS.gene049206.t1 AT3G20410 49.807 259 86 1 27 241 91 349 6.53e-84 261
MS.gene049206.t1 AT3G20410 49.807 259 86 1 27 241 91 349 6.53e-84 261
MS.gene049206.t1 AT5G12180 49.618 262 88 1 27 244 73 334 6.79e-84 260
MS.gene049206.t1 AT4G04720 49.434 265 90 1 21 241 74 338 1.04e-83 260
MS.gene049206.t1 AT4G04720 49.434 265 90 1 21 241 74 338 1.04e-83 260
MS.gene049206.t1 AT5G19360 50.000 262 87 1 27 244 68 329 1.23e-83 259
MS.gene049206.t1 AT5G12480 46.863 271 100 1 27 253 59 329 2.74e-82 256
MS.gene049206.t1 AT1G50700 48.649 259 89 1 27 241 73 331 2.01e-81 253
MS.gene049206.t1 AT1G50700 48.649 259 89 1 27 241 73 331 3.19e-81 253
MS.gene049206.t1 AT3G51850 47.601 271 98 1 27 253 54 324 5.48e-81 249
MS.gene049206.t1 AT1G50700 48.649 259 89 1 27 241 73 331 6.11e-81 253
MS.gene049206.t1 AT3G57530 45.756 271 103 1 27 253 63 333 1.24e-80 249
MS.gene049206.t1 AT3G51850 47.601 271 98 1 27 253 54 324 1.02e-79 249
MS.gene049206.t1 AT5G19450 45.588 272 104 1 26 253 56 327 1.22e-79 249
MS.gene049206.t1 AT5G19450 45.588 272 104 1 26 253 56 327 1.22e-79 249
MS.gene049206.t1 AT2G41860 46.886 273 101 1 25 253 52 324 1.63e-79 249
MS.gene049206.t1 AT3G57530 45.756 271 103 1 27 253 63 333 2.76e-79 249
MS.gene049206.t1 AT3G51850 49.035 259 88 1 27 241 54 312 3.59e-79 248
MS.gene049206.t1 AT2G41860 46.520 273 102 1 25 253 52 324 4.67e-79 248
MS.gene049206.t1 AT1G74740 46.863 271 100 1 27 253 59 329 5.01e-77 243
MS.gene049206.t1 AT1G18890 46.125 271 102 1 27 253 63 333 4.35e-75 238
MS.gene049206.t1 AT2G31500 44.015 259 101 1 27 241 66 324 4.02e-70 226
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.10e-69 223
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.10e-69 223
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.10e-69 223
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.10e-69 223
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.10e-69 223
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.10e-69 223
MS.gene049206.t1 AT4G04740 48.163 245 83 1 41 241 83 327 1.22e-69 223
MS.gene049206.t1 AT4G04710 45.247 263 90 4 27 241 36 292 2.70e-64 208
MS.gene049206.t1 AT4G04710 44.444 270 95 4 27 241 36 305 2.37e-63 206
MS.gene049206.t1 AT4G04710 44.444 270 95 4 27 241 36 305 2.43e-63 206
MS.gene049206.t1 AT2G17890 40.149 269 115 2 19 241 100 368 1.03e-61 204
MS.gene049206.t1 AT4G04695 40.569 281 113 4 11 243 18 292 6.19e-61 199
MS.gene049206.t1 AT5G66210 39.033 269 118 2 19 241 54 322 8.16e-60 196
MS.gene049206.t1 AT5G66210 39.033 269 118 2 19 241 54 322 8.16e-60 196
MS.gene049206.t1 AT5G66210 39.033 269 118 2 19 241 54 322 1.79e-59 196
MS.gene049206.t1 AT4G36070 38.290 269 120 2 19 241 63 331 2.90e-59 196
MS.gene049206.t1 AT5G66210 39.033 269 118 2 19 241 54 322 3.12e-59 195
MS.gene049206.t1 AT5G66210 39.033 269 118 2 19 241 54 322 5.74e-59 195
MS.gene049206.t1 AT5G66210 39.033 269 118 2 19 241 54 322 5.74e-59 195
MS.gene049206.t1 AT4G36070 38.290 269 120 2 19 241 63 331 6.98e-59 196
MS.gene049206.t1 AT1G12580 40.154 259 111 1 27 241 44 302 1.53e-57 192
MS.gene049206.t1 AT1G12680 38.148 270 119 2 27 255 107 369 2.63e-57 190
MS.gene049206.t1 AT4G04700 38.351 279 118 3 11 241 18 290 1.40e-56 188
MS.gene049206.t1 AT4G04710 41.825 263 85 5 27 241 36 278 8.98e-53 178
MS.gene049206.t1 AT3G50530 36.000 275 124 5 19 243 140 412 4.21e-49 171
MS.gene049206.t1 AT5G24430 35.401 274 129 3 19 244 135 408 2.40e-47 166
MS.gene049206.t1 AT3G49370 35.766 274 128 3 19 244 134 407 1.33e-46 164
MS.gene049206.t1 AT1G49580 34.317 271 130 3 19 241 142 412 1.38e-45 161
MS.gene049206.t1 AT3G56760 33.212 274 131 4 19 242 116 387 2.68e-45 160
MS.gene049206.t1 AT2G41140 33.212 274 131 4 19 242 115 386 4.15e-45 159
MS.gene049206.t1 AT3G19100 34.397 282 132 5 19 252 136 412 3.48e-44 157
MS.gene049206.t1 AT4G38230 61.682 107 41 0 138 244 35 141 8.60e-44 151
MS.gene049206.t1 AT1G76040 55.833 120 53 0 126 245 17 136 1.16e-43 150
MS.gene049206.t1 AT1G76040 55.833 120 53 0 126 245 17 136 1.16e-43 150
MS.gene049206.t1 AT1G08650 33.977 259 127 3 27 241 15 273 5.63e-43 147
MS.gene049206.t1 AT3G04530 35.249 261 125 4 27 243 11 271 6.32e-43 147
MS.gene049206.t1 AT5G12480 56.034 116 51 0 138 253 120 235 2.20e-42 150
MS.gene049206.t1 AT2G46700 33.214 280 127 4 19 244 135 408 2.44e-42 152
MS.gene049206.t1 AT1G08650 33.333 261 128 4 27 243 15 273 1.86e-39 138
MS.gene049206.t1 AT2G46700 34.091 220 100 2 70 244 8 227 1.10e-36 134
MS.gene049206.t1 AT2G46700 34.091 220 100 2 70 244 8 227 1.10e-36 134
MS.gene049206.t1 AT3G01090 32.576 264 130 5 20 240 12 270 2.80e-32 124
MS.gene049206.t1 AT3G01090 32.576 264 130 5 20 240 12 270 2.80e-32 124
MS.gene049206.t1 AT3G01090 32.576 264 130 5 20 240 35 293 3.72e-32 124
MS.gene049206.t1 AT2G25880 32.743 226 141 5 27 244 25 247 6.31e-32 118
MS.gene049206.t1 AT1G48260 29.368 269 137 5 27 248 11 273 6.83e-30 116
MS.gene049206.t1 AT3G29160 31.518 257 128 5 27 240 20 271 2.27e-29 114
MS.gene049206.t1 AT4G24400 28.137 263 138 5 27 244 9 265 5.88e-29 114
MS.gene049206.t1 AT4G24400 28.137 263 138 5 27 244 9 265 6.87e-29 113
MS.gene049206.t1 AT5G21326 29.615 260 132 5 27 240 13 267 7.55e-29 114
MS.gene049206.t1 AT3G29160 31.518 257 128 5 27 240 20 271 1.15e-28 114
MS.gene049206.t1 AT3G29160 31.518 257 128 5 27 240 20 271 1.15e-28 114
MS.gene049206.t1 AT3G17510 28.736 261 133 5 27 240 20 274 1.19e-28 113
MS.gene049206.t1 AT2G25880 29.070 258 140 6 27 244 25 279 1.41e-28 110
MS.gene049206.t1 AT3G50530 47.619 105 55 0 139 243 339 443 1.43e-28 114
MS.gene049206.t1 AT3G50530 36.296 135 78 3 19 147 140 272 2.08e-18 84.7
MS.gene049206.t1 AT4G32830 29.197 274 143 7 11 244 23 285 1.82e-28 110
MS.gene049206.t1 AT2G25880 29.070 258 140 6 27 244 38 292 1.83e-28 110
MS.gene049206.t1 AT2G25880 29.070 258 140 6 27 244 86 340 3.43e-28 110
MS.gene049206.t1 AT5G01810 28.846 260 133 6 27 240 12 265 7.13e-28 110
MS.gene049206.t1 AT2G26980 29.167 264 136 6 27 244 14 272 1.03e-27 109
MS.gene049206.t1 AT5G39440 29.688 256 133 5 27 240 19 269 1.24e-27 110
MS.gene049206.t1 AT5G35410 28.295 258 136 5 27 240 11 263 1.26e-27 109
MS.gene049206.t1 AT2G26980 29.167 264 136 6 27 244 14 272 1.66e-27 110
MS.gene049206.t1 AT2G26980 29.167 264 136 6 27 244 14 272 1.81e-27 109
MS.gene049206.t1 AT5G01810 28.846 260 133 6 27 240 12 265 1.89e-27 109
MS.gene049206.t1 AT5G01810 28.846 260 133 6 27 240 12 265 1.89e-27 109
MS.gene049206.t1 AT2G26980 29.167 264 136 6 27 244 24 282 1.93e-27 110
MS.gene049206.t1 AT5G35410 28.295 258 136 5 27 240 11 263 2.06e-27 109
MS.gene049206.t1 AT3G23000 29.730 259 133 4 27 240 25 279 2.88e-27 109
MS.gene049206.t1 AT1G01140 28.462 260 137 5 27 240 19 275 4.99e-27 108
MS.gene049206.t1 AT1G30270 28.462 260 135 5 27 240 31 285 5.75e-27 108
MS.gene049206.t1 AT1G30270 28.846 260 134 5 27 240 31 285 7.50e-27 108
MS.gene049206.t1 AT1G01140 28.846 260 134 6 27 240 19 273 1.92e-26 107
MS.gene049206.t1 AT1G01140 28.846 260 134 6 27 240 19 273 2.29e-26 107
MS.gene049206.t1 AT4G30960 29.104 268 138 6 27 248 24 285 3.71e-26 106
MS.gene049206.t1 AT4G14580 27.969 261 136 4 27 240 21 276 1.42e-25 104
MS.gene049206.t1 AT5G45810 29.231 260 132 6 27 240 28 281 1.48e-25 105
MS.gene049206.t1 AT5G07070 29.710 276 135 8 11 240 3 265 1.55e-25 104
MS.gene049206.t1 AT2G45490 25.969 258 148 4 27 244 22 276 2.61e-25 101
MS.gene049206.t1 AT5G25110 29.231 260 132 7 27 240 43 296 2.70e-25 104
MS.gene049206.t1 AT2G26980 29.268 246 123 6 27 226 14 254 2.70e-25 101
MS.gene049206.t1 AT2G30360 27.376 263 139 6 27 242 21 278 2.94e-25 103
MS.gene049206.t1 AT5G21222 26.894 264 142 5 27 244 13 271 5.50e-25 104
MS.gene049206.t1 AT5G21222 26.894 264 142 5 27 244 13 271 5.50e-25 104
MS.gene049206.t1 AT5G21222 26.894 264 142 5 27 244 13 271 5.50e-25 104
MS.gene049206.t1 AT5G21222 26.894 264 142 5 27 244 13 271 5.50e-25 104
MS.gene049206.t1 AT5G45820 27.308 260 137 5 27 240 12 265 6.27e-25 102
MS.gene049206.t1 AT4G18700 28.846 260 133 6 27 240 26 279 1.48e-24 102
MS.gene049206.t1 AT5G10930 28.626 262 134 8 27 241 12 267 1.79e-23 99.0
MS.gene049206.t1 AT4G40010 27.376 263 139 6 27 242 4 261 7.55e-23 96.3
MS.gene049206.t1 AT3G61960 27.562 283 149 7 27 260 10 285 3.58e-22 95.9
MS.gene049206.t1 AT2G25090 27.985 268 134 7 27 240 15 277 3.86e-22 95.5
MS.gene049206.t1 AT3G61960 27.562 283 149 7 27 260 10 285 4.71e-22 95.5
MS.gene049206.t1 AT5G08590 27.203 261 138 5 27 240 4 259 5.67e-22 93.6
MS.gene049206.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.18e-20 90.1
MS.gene049206.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.18e-20 90.1
MS.gene049206.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.18e-20 90.1
MS.gene049206.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.18e-20 90.1
MS.gene049206.t1 AT3G53930 25.912 274 148 7 27 251 20 287 1.30e-20 91.3
MS.gene049206.t1 AT3G53930 25.912 274 148 7 27 251 20 287 1.31e-20 91.3
MS.gene049206.t1 AT2G37840 24.561 285 160 7 16 251 1 279 1.71e-20 90.9
MS.gene049206.t1 AT1G29230 27.308 260 137 7 27 240 74 327 1.82e-20 90.9
MS.gene049206.t1 AT1G60940 25.540 278 155 6 27 257 4 276 3.35e-20 89.0
MS.gene049206.t1 AT1G60940 25.540 278 155 6 27 257 4 276 3.35e-20 89.0
MS.gene049206.t1 AT1G78290 27.341 267 138 8 27 244 4 263 5.58e-20 88.2
MS.gene049206.t1 AT1G78290 27.341 267 138 8 27 244 4 263 5.58e-20 88.2
MS.gene049206.t1 AT5G63650 25.660 265 145 5 27 244 4 263 9.12e-20 87.8
MS.gene049206.t1 AT2G34180 25.769 260 141 5 27 240 57 310 2.15e-19 87.4
MS.gene049206.t1 AT1G10940 25.373 268 148 5 27 247 4 266 3.58e-19 86.3
MS.gene049206.t1 AT2G38490 30.268 261 128 9 27 240 28 281 9.81e-19 85.5
MS.gene049206.t1 AT5G57630 26.482 253 137 5 27 236 12 258 1.12e-18 85.1
MS.gene049206.t1 AT5G57630 26.482 253 137 5 27 236 12 258 1.22e-18 85.1
MS.gene049206.t1 AT3G45240 26.437 261 138 6 31 242 112 367 1.82e-18 84.3
MS.gene049206.t1 AT3G45240 27.273 264 135 7 31 242 112 370 2.23e-18 84.0
MS.gene049206.t1 AT3G45240 27.273 264 135 7 31 242 112 370 2.23e-18 84.0
MS.gene049206.t1 AT3G17510 28.877 187 81 4 101 240 13 194 3.42e-18 83.2
MS.gene049206.t1 AT1G45160 41.379 116 55 4 133 240 844 954 1.31e-17 82.8
MS.gene049206.t1 AT1G30270 28.495 186 83 4 102 241 8 189 1.41e-17 81.6
MS.gene049206.t1 AT1G45160 41.379 116 55 4 133 240 844 954 1.47e-17 82.4
MS.gene049206.t1 AT5G01820 25.368 272 148 7 27 249 22 287 2.37e-17 81.3
MS.gene049206.t1 AT5G08590 28.877 187 86 3 105 244 1 187 1.19e-16 77.8
MS.gene049206.t1 AT2G32510 25.926 270 134 9 27 242 3 260 3.48e-15 74.7
MS.gene049206.t1 AT5G04510 24.324 259 132 7 27 229 44 294 1.48e-14 72.4
MS.gene049206.t1 AT5G62310 45.745 94 41 3 144 232 943 1031 1.81e-14 73.6
MS.gene049206.t1 AT3G63280 33.871 124 76 3 131 252 204 323 1.39e-13 70.5
MS.gene049206.t1 AT3G63280 33.871 124 76 3 131 252 150 269 2.56e-13 69.7
MS.gene049206.t1 AT3G63280 33.871 124 76 3 131 252 150 269 2.56e-13 69.7
MS.gene049206.t1 AT3G63280 33.871 124 76 3 131 252 150 269 2.56e-13 69.7
MS.gene049206.t1 AT1G03920 37.624 101 60 2 144 241 222 322 2.20e-12 67.0
MS.gene049206.t1 AT1G30640 38.235 102 58 3 144 241 230 330 2.35e-12 66.6
MS.gene049206.t1 AT1G03920 37.624 101 60 2 144 241 335 435 3.42e-12 66.2
MS.gene049206.t1 AT1G03920 37.624 101 60 2 144 241 335 435 3.42e-12 66.2
MS.gene049206.t1 AT1G48490 39.048 105 57 4 144 243 1012 1114 4.73e-12 66.2
MS.gene049206.t1 AT1G48490 39.048 105 57 4 144 243 1011 1113 4.78e-12 66.2
MS.gene049206.t1 AT1G48490 39.048 105 57 4 144 243 1011 1113 4.78e-12 66.2
MS.gene049206.t1 AT1G48490 39.048 105 57 4 144 243 1011 1113 4.78e-12 66.2
MS.gene049206.t1 AT1G30640 38.614 101 57 3 144 240 323 422 4.88e-12 65.9
MS.gene049206.t1 AT1G30640 38.614 101 57 3 144 240 323 422 4.88e-12 65.9
MS.gene049206.t1 AT4G33080 39.048 105 58 3 144 243 301 404 5.66e-12 65.9
MS.gene049206.t1 AT4G33080 39.048 105 58 3 144 243 301 404 6.00e-12 65.5
MS.gene049206.t1 AT3G17850 39.362 94 47 3 144 232 1071 1159 7.72e-12 65.5
MS.gene049206.t1 AT2G37840 32.743 113 67 3 144 251 34 142 1.09e-11 65.1
MS.gene049206.t1 AT5G09890 40.000 100 57 2 144 240 304 403 1.43e-11 64.3
MS.gene049206.t1 AT5G09890 40.000 100 57 2 144 240 304 403 1.48e-11 64.3
MS.gene049206.t1 AT5G57630 34.653 101 60 2 138 236 74 170 3.39e-11 62.8
MS.gene049206.t1 AT4G14350 39.216 102 57 3 144 241 318 418 4.77e-11 63.2
MS.gene049206.t1 AT4G14350 39.216 102 57 3 144 241 318 418 5.45e-11 62.8
MS.gene049206.t1 AT4G14350 39.216 102 57 3 144 241 318 418 5.45e-11 62.8
MS.gene049206.t1 AT4G14350 39.216 102 57 3 144 241 318 418 5.45e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTCTCTGTAAAATA+AGG 0.161557 3.3:-80718484 None:intergenic
AACTATATTTCTAATCAATT+TGG 0.216435 3.3:-80718821 None:intergenic
TAAGCGGGGTGCCTCCGTTT+TGG 0.249111 3.3:+80719844 MS.gene049206:CDS
CTGTTTGTTGATCCCCTCCT+TGG 0.331288 3.3:-80719980 None:intergenic
ACCTCTGGTGCAGTATAGCC+TGG 0.423907 3.3:-80719756 None:intergenic
GCACTCCAAATGTCTGCTTC+AGG 0.426410 3.3:-80719798 None:intergenic
ATGGACCTGAAGCAGACATT+TGG 0.437988 3.3:+80719793 MS.gene049206:CDS
GTTTGATAGGATTGTGAAGA+AGG 0.439249 3.3:+80718774 MS.gene049206:CDS
CTTCTGTCGTCGACAATCCA+TGG 0.439678 3.3:-80720242 None:intergenic
GAAACATTTAGTCAAGTTGT+TGG 0.446071 3.3:+80719729 MS.gene049206:CDS
AGAATTTCTCTGTAAAATAA+GGG 0.447053 3.3:-80718483 None:intergenic
CTACACGTTAGGTAGACAAC+TGG 0.448889 3.3:+80718513 MS.gene049206:CDS
TTGATTAGAAATATAGTTGA+GGG 0.460590 3.3:+80718826 MS.gene049206:CDS
ACAGAGAACTTATAGACAAC+AGG 0.463551 3.3:-80720300 None:intergenic
AGTCAAGTTGTTGGAACCCC+AGG 0.470655 3.3:+80719738 MS.gene049206:CDS
CAACTGGGCCAAGGTCAATT+CGG 0.478235 3.3:+80718529 MS.gene049206:CDS
AAGGTGGTGAGTTGTTTGAT+AGG 0.480005 3.3:+80718761 MS.gene049206:CDS
GATGAAACTATTACGCATTG+AGG 0.492378 3.3:+80718615 MS.gene049206:CDS
GAGGTCTTGAACGGGCATTA+TGG 0.493285 3.3:+80719774 MS.gene049206:CDS
TTCTGTCAAATCTACACGTT+AGG 0.504600 3.3:+80718502 MS.gene049206:CDS
TTGAAAGGAATCCGGAGAAA+AGG 0.507068 3.3:+80720085 MS.gene049206:CDS
TTGGCACCGTCTGAAATTGA+AGG 0.509194 3.3:-80720042 None:intergenic
TAATGCCCGTTCAAGACCTC+TGG 0.511246 3.3:-80719771 None:intergenic
CAGTGCACACACAATTCATC+AGG 0.516983 3.3:+80718562 MS.gene049206:CDS
TTTGATAGGATTGTGAAGAA+GGG 0.526562 3.3:+80718775 MS.gene049206:CDS
TTCAATTTCAGACGGTGCCA+AGG 0.527095 3.3:+80720044 MS.gene049206:CDS
GAAGCAGACATTTGGAGTGC+CGG 0.534755 3.3:+80719801 MS.gene049206:CDS
CCTCTGGTGCAGTATAGCCT+GGG 0.536066 3.3:-80719755 None:intergenic
CTGCACCAGAGGTCTTGAAC+GGG 0.536546 3.3:+80719766 MS.gene049206:CDS
GAAAACTTTGTGAAAATCCA+TGG 0.538160 3.3:+80718691 MS.gene049206:CDS
GATAATTTACCTCCCCAAAA+CGG 0.550561 3.3:-80719858 None:intergenic
ATAAATCTTCATAGATACCA+TGG 0.559353 3.3:-80718708 None:intergenic
GTAAAATAAGGGAGAACCCA+TGG 0.561040 3.3:-80718472 None:intergenic
TTCTGTCGTCGACAATCCAT+GGG 0.582065 3.3:-80720241 None:intergenic
TGAGATTGACTTGCACGCGT+AGG 0.584700 3.3:-80718590 None:intergenic
ATTGATTAGAAATATAGTTG+AGG 0.590682 3.3:+80718825 MS.gene049206:CDS
TTGATAGGATTGTGAAGAAG+GGG 0.592898 3.3:+80718776 MS.gene049206:CDS
CCGTCTGAAATTGAAGGCCA+CGG 0.599134 3.3:-80720036 None:intergenic
CTCTGGTGCAGTATAGCCTG+GGG 0.599484 3.3:-80719754 None:intergenic
TTACGATGATGTTCTGAGAG+AGG 0.603257 3.3:+80718639 MS.gene049206:CDS
ACTGCACCAGAGGTCTTGAA+CGG 0.607574 3.3:+80719765 MS.gene049206:CDS
TAACCTACAGAGACCAAGGA+GGG 0.610754 3.3:+80719967 MS.gene049206:intron
GTTATGGAGCTGTGTGAAGG+TGG 0.614258 3.3:+80718745 MS.gene049206:CDS
TTGATTTGCAGTCTAAGCCG+TGG 0.614559 3.3:+80720019 MS.gene049206:CDS
CCGTGGCCTTCAATTTCAGA+CGG 0.615060 3.3:+80720036 MS.gene049206:CDS
ATTGTGTGTGCACTGATATG+TGG 0.620136 3.3:-80718554 None:intergenic
TTTGTACTTCTTATTAAGCG+GGG 0.620322 3.3:+80719830 MS.gene049206:CDS
TTAGGTAGACAACTGGGCCA+AGG 0.621607 3.3:+80718520 MS.gene049206:CDS
TTGGTTATGGAGCTGTGTGA+AGG 0.625965 3.3:+80718742 MS.gene049206:CDS
CCCAGGCTATACTGCACCAG+AGG 0.637073 3.3:+80719755 MS.gene049206:CDS
ATGTGGTGCCGAATTGACCT+TGG 0.652607 3.3:-80718537 None:intergenic
TACACGTTAGGTAGACAACT+GGG 0.668157 3.3:+80718514 MS.gene049206:CDS
AACCTACAGAGACCAAGGAG+GGG 0.676140 3.3:+80719968 MS.gene049206:intron
TAAGAAGTACAAAATAACGC+CGG 0.702872 3.3:-80719820 None:intergenic
AATTTACCTCCCCAAAACGG+AGG 0.704130 3.3:-80719855 None:intergenic
TTAACCTACAGAGACCAAGG+AGG 0.760856 3.3:+80719966 MS.gene049206:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATATTTCTAATCAATT+TGG - chr3.3:80718824-80718843 None:intergenic 15.0%
!!! GAAATTATTTTAAATTTTGG+TGG + chr3.3:80719112-80719131 MS.gene049206:intron 15.0%
!! AAAGAAAGAAAAAAAAAACC+TGG - chr3.3:80718979-80718998 None:intergenic 20.0%
!! AGAATTTCTCTGTAAAATAA+GGG - chr3.3:80718486-80718505 None:intergenic 20.0%
!! AGTAGATCATACAAAAAATT+AGG + chr3.3:80720263-80720282 MS.gene049206:CDS 20.0%
!! ATTGATTAGAAATATAGTTG+AGG + chr3.3:80718825-80718844 MS.gene049206:CDS 20.0%
!! TAAGTATATGTATCATGAAA+GGG - chr3.3:80719686-80719705 None:intergenic 20.0%
!! TTAAGTATATGTATCATGAA+AGG - chr3.3:80719687-80719706 None:intergenic 20.0%
!! TTGATTAGAAATATAGTTGA+GGG + chr3.3:80718826-80718845 MS.gene049206:CDS 20.0%
!!! AAATTATCATTAGTTGATGT+AGG + chr3.3:80719873-80719892 MS.gene049206:intron 20.0%
!!! ACTCTCAAAATTATTGATTT+TGG + chr3.3:80718934-80718953 MS.gene049206:intron 20.0%
!!! AGATTTATTTTCTTTTCACT+TGG + chr3.3:80718723-80718742 MS.gene049206:CDS 20.0%
!!! ATTTTGTACTTCTTATTAAG+CGG + chr3.3:80719828-80719847 MS.gene049206:CDS 20.0%
!!! CTCTCAAAATTATTGATTTT+GGG + chr3.3:80718935-80718954 MS.gene049206:intron 20.0%
! AATAAGATACTTGCTCTATA+AGG - chr3.3:80720147-80720166 None:intergenic 25.0%
! ATAAATCTTCATAGATACCA+TGG - chr3.3:80718711-80718730 None:intergenic 25.0%
! ATTGAAGATTGTCATTCTAA+TGG + chr3.3:80718850-80718869 MS.gene049206:intron 25.0%
! CAACAAGCATACTATATATT+TGG - chr3.3:80719522-80719541 None:intergenic 25.0%
! CAGAATTTCTCTGTAAAATA+AGG - chr3.3:80718487-80718506 None:intergenic 25.0%
! GATCATACAAAAAATTAGGA+TGG + chr3.3:80720267-80720286 MS.gene049206:CDS 25.0%
! TTGAAGATTGTCATTCTAAT+GGG + chr3.3:80718851-80718870 MS.gene049206:intron 25.0%
! TTTGAATAATTATCACAACG+AGG + chr3.3:80720177-80720196 MS.gene049206:intron 25.0%
!! AACAAATTGATGTGATTTTC+AGG + chr3.3:80719705-80719724 MS.gene049206:intron 25.0%
!! AATATATAGTATGCTTGTTG+AGG + chr3.3:80719522-80719541 MS.gene049206:intron 25.0%
!! ATTTTCTTTTCACTTGGTTA+TGG + chr3.3:80718729-80718748 MS.gene049206:CDS 25.0%
!! TTTTGTACTTCTTATTAAGC+GGG + chr3.3:80719829-80719848 MS.gene049206:CDS 25.0%
!!! TGATTTGAATCTTGTTGTTT+TGG + chr3.3:80719140-80719159 MS.gene049206:intron 25.0%
AAAAATGCTTGAAAGGAATC+CGG + chr3.3:80720077-80720096 MS.gene049206:CDS 30.0%
ACAAAAAATTAGGATGGAAG+TGG + chr3.3:80720273-80720292 MS.gene049206:CDS 30.0%
CAGCATAATATTAGCATTAC+TGG - chr3.3:80719938-80719957 None:intergenic 30.0%
GAAAACTTTGTGAAAATCCA+TGG + chr3.3:80718691-80718710 MS.gene049206:CDS 30.0%
TACTTCGAAAAATGCTTGAA+AGG + chr3.3:80720070-80720089 MS.gene049206:CDS 30.0%
TGAAAGTTATAGAGCTTATG+TGG + chr3.3:80720201-80720220 MS.gene049206:intron 30.0%
TGAAGATTGTCATTCTAATG+GGG + chr3.3:80718852-80718871 MS.gene049206:intron 30.0%
TTGTAGAGTTCCTAATTGAT+GGG + chr3.3:80719244-80719263 MS.gene049206:intron 30.0%
TTGTTGAGGAAATAAATGGA+GGG + chr3.3:80719536-80719555 MS.gene049206:intron 30.0%
TTTGATAGGATTGTGAAGAA+GGG + chr3.3:80718775-80718794 MS.gene049206:CDS 30.0%
TTTGTACTTCTTATTAAGCG+GGG + chr3.3:80719830-80719849 MS.gene049206:CDS 30.0%
! ATCAACAAACAGATTTTGCA+AGG + chr3.3:80719991-80720010 MS.gene049206:CDS 30.0%
! ATGCTTGTTGAGGAAATAAA+TGG + chr3.3:80719532-80719551 MS.gene049206:intron 30.0%
! GAAACATTTAGTCAAGTTGT+TGG + chr3.3:80719729-80719748 MS.gene049206:CDS 30.0%
! TAAGAAGTACAAAATAACGC+CGG - chr3.3:80719823-80719842 None:intergenic 30.0%
! TTTTAGCAGTATCAAACACA+AGG - chr3.3:80718906-80718925 None:intergenic 30.0%
ACACAAGGTTATCAGGTTTA+AGG - chr3.3:80718891-80718910 None:intergenic 35.0%
ACTCATATAGCACTAGACTA+TGG + chr3.3:80719452-80719471 MS.gene049206:intron 35.0%
ATGTATCATGAAAGGGCTTA+TGG - chr3.3:80719679-80719698 None:intergenic 35.0%
CTTGTTGAGGAAATAAATGG+AGG + chr3.3:80719535-80719554 MS.gene049206:intron 35.0%
GATAATTTACCTCCCCAAAA+CGG - chr3.3:80719861-80719880 None:intergenic 35.0%
GATGAAACTATTACGCATTG+AGG + chr3.3:80718615-80718634 MS.gene049206:CDS 35.0%
GTATCAAACACAAGGTTATC+AGG - chr3.3:80718898-80718917 None:intergenic 35.0%
GTTGTAGAGTTCCTAATTGA+TGG + chr3.3:80719243-80719262 MS.gene049206:intron 35.0%
GTTTGATAGGATTGTGAAGA+AGG + chr3.3:80718774-80718793 MS.gene049206:CDS 35.0%
TCGATCAAATTCTGTGTGAT+TGG + chr3.3:80719020-80719039 MS.gene049206:intron 35.0%
TGTAGAGTTCCTAATTGATG+GGG + chr3.3:80719245-80719264 MS.gene049206:intron 35.0%
TTACTGTGTTCAATCAACTG+AGG + chr3.3:80719496-80719515 MS.gene049206:intron 35.0%
TTCTGTCAAATCTACACGTT+AGG + chr3.3:80718502-80718521 MS.gene049206:CDS 35.0%
TTGATAGGATTGTGAAGAAG+GGG + chr3.3:80718776-80718795 MS.gene049206:CDS 35.0%
! ACAAACAGATTTTGCAAGGA+AGG + chr3.3:80719995-80720014 MS.gene049206:CDS 35.0%
! TCTGCATCTTTTACAAACGA+GGG + chr3.3:80719071-80719090 MS.gene049206:intron 35.0%
! TTCTGCATCTTTTACAAACG+AGG + chr3.3:80719070-80719089 MS.gene049206:intron 35.0%
! TTTTTAACCTACAGAGACCA+AGG + chr3.3:80719963-80719982 MS.gene049206:intron 35.0%
!! ATAAATGGAGGGTACTCAAA+TGG + chr3.3:80719547-80719566 MS.gene049206:intron 35.0%
!! CATTTTTCGAAGTAGATCCT+TGG - chr3.3:80720064-80720083 None:intergenic 35.0%
!! TAAATGGAGGGTACTCAAAT+GGG + chr3.3:80719548-80719567 MS.gene049206:intron 35.0%
!!! AGAGCTTATGTGGTTTTTTG+TGG + chr3.3:80720211-80720230 MS.gene049206:intron 35.0%
!!! TTGTCTACTTTTTACAAGCC+AGG + chr3.3:80718958-80718977 MS.gene049206:intron 35.0%
AAGGTGGTGAGTTGTTTGAT+AGG + chr3.3:80718761-80718780 MS.gene049206:CDS 40.0%
ACACGACACTAACATTGACA+TGG + chr3.3:80719334-80719353 MS.gene049206:intron 40.0%
AGTACCACCACAAAAACCAT+GGG + chr3.3:80718456-80718475 MS.gene049206:CDS 40.0%
GTAAAATAAGGGAGAACCCA+TGG - chr3.3:80718475-80718494 None:intergenic 40.0%
GTCTAGTGCTATATGAGTCA+CGG - chr3.3:80719450-80719469 None:intergenic 40.0%
TAATCGTATCAGCGCATTGT+CGG + chr3.3:80719397-80719416 MS.gene049206:intron 40.0%
TACACGTTAGGTAGACAACT+GGG + chr3.3:80718514-80718533 MS.gene049206:CDS 40.0%
TCAATGTTAGTGTCGTGTTC+AGG - chr3.3:80719332-80719351 None:intergenic 40.0%
TGAAAACAGTGACATGCCTA+CGG - chr3.3:80719899-80719918 None:intergenic 40.0%
TGTGTTCGTGCTACAAATCA+TGG - chr3.3:80719307-80719326 None:intergenic 40.0%
TTGAAAGGAATCCGGAGAAA+AGG + chr3.3:80720085-80720104 MS.gene049206:CDS 40.0%
TTGATGGGGTGGTTCAAATT+TGG + chr3.3:80719259-80719278 MS.gene049206:intron 40.0%
TTTGAACCACCCCATCAATT+AGG - chr3.3:80719257-80719276 None:intergenic 40.0%
! ATTGTGTGTGCACTGATATG+TGG - chr3.3:80718557-80718576 None:intergenic 40.0%
! GAAAGGGCTTATGGTTGATA+TGG - chr3.3:80719670-80719689 None:intergenic 40.0%
!! TTACGATGATGTTCTGAGAG+AGG + chr3.3:80718639-80718658 MS.gene049206:CDS 40.0%
!!! CTTATGTGGTTTTTTGTGGC+AGG + chr3.3:80720215-80720234 MS.gene049206:intron 40.0%
AATTTACCTCCCCAAAACGG+AGG - chr3.3:80719858-80719877 None:intergenic 45.0%
AGAGTTCCTAATTGATGGGG+TGG + chr3.3:80719248-80719267 MS.gene049206:intron 45.0%
ATGGACCTGAAGCAGACATT+TGG + chr3.3:80719793-80719812 MS.gene049206:CDS 45.0%
CAGTACCACCACAAAAACCA+TGG + chr3.3:80718455-80718474 MS.gene049206:CDS 45.0%
CAGTGCACACACAATTCATC+AGG + chr3.3:80718562-80718581 MS.gene049206:CDS 45.0%
CTACACGTTAGGTAGACAAC+TGG + chr3.3:80718513-80718532 MS.gene049206:CDS 45.0%
TAACCTACAGAGACCAAGGA+GGG + chr3.3:80719967-80719986 MS.gene049206:intron 45.0%
TTAACCTACAGAGACCAAGG+AGG + chr3.3:80719966-80719985 MS.gene049206:intron 45.0%
TTCTGTCGTCGACAATCCAT+GGG - chr3.3:80720244-80720263 None:intergenic 45.0%
TTGGTTATGGAGCTGTGTGA+AGG + chr3.3:80718742-80718761 MS.gene049206:CDS 45.0%
! AGAACCCATGGTTTTTGTGG+TGG - chr3.3:80718463-80718482 None:intergenic 45.0%
! CATTAGTTGATGTAGGCCGT+AGG + chr3.3:80719880-80719899 MS.gene049206:intron 45.0%
! TGAGCTGTGAACCTTTTCTC+CGG - chr3.3:80720099-80720118 None:intergenic 45.0%
! TGGTTTTTGTGGTGGTACTG+TGG - chr3.3:80718455-80718474 None:intergenic 45.0%
! TTCAATTTCAGACGGTGCCA+AGG + chr3.3:80720044-80720063 MS.gene049206:CDS 45.0%
! TTGGCACCGTCTGAAATTGA+AGG - chr3.3:80720045-80720064 None:intergenic 45.0%
!! TTGATTTGCAGTCTAAGCCG+TGG + chr3.3:80720019-80720038 MS.gene049206:CDS 45.0%
!!! AAAGAAATTATTTTAAATTT+TGG + chr3.3:80719109-80719128 MS.gene049206:intron 5.0%
AACCTACAGAGACCAAGGAG+GGG + chr3.3:80719968-80719987 MS.gene049206:intron 50.0%
ACTGCACCAGAGGTCTTGAA+CGG + chr3.3:80719765-80719784 MS.gene049206:CDS 50.0%
CAACTGGGCCAAGGTCAATT+CGG + chr3.3:80718529-80718548 MS.gene049206:CDS 50.0%
CCGTGGCCTTCAATTTCAGA+CGG + chr3.3:80720036-80720055 MS.gene049206:CDS 50.0%
CTTCTGTCGTCGACAATCCA+TGG - chr3.3:80720245-80720264 None:intergenic 50.0%
GAGGTCTTGAACGGGCATTA+TGG + chr3.3:80719774-80719793 MS.gene049206:CDS 50.0%
GCACTCCAAATGTCTGCTTC+AGG - chr3.3:80719801-80719820 None:intergenic 50.0%
GTTATGGAGCTGTGTGAAGG+TGG + chr3.3:80718745-80718764 MS.gene049206:CDS 50.0%
TAATGCCCGTTCAAGACCTC+TGG - chr3.3:80719774-80719793 None:intergenic 50.0%
TATCAGCGCATTGTCGGTGT+CGG + chr3.3:80719403-80719422 MS.gene049206:intron 50.0%
TTAGGTAGACAACTGGGCCA+AGG + chr3.3:80718520-80718539 MS.gene049206:CDS 50.0%
! AGTCAAGTTGTTGGAACCCC+AGG + chr3.3:80719738-80719757 MS.gene049206:CDS 50.0%
! ATGTGGTGCCGAATTGACCT+TGG - chr3.3:80718540-80718559 None:intergenic 50.0%
! CCGTCTGAAATTGAAGGCCA+CGG - chr3.3:80720039-80720058 None:intergenic 50.0%
! CTGTTTGTTGATCCCCTCCT+TGG - chr3.3:80719983-80720002 None:intergenic 50.0%
! GAAGCAGACATTTGGAGTGC+CGG + chr3.3:80719801-80719820 MS.gene049206:CDS 50.0%
! GGGAGAACCCATGGTTTTTG+TGG - chr3.3:80718466-80718485 None:intergenic 50.0%
! TTTTTGTGGCAGGTCACCCA+TGG + chr3.3:80720225-80720244 MS.gene049206:intron 50.0%
!! TGAGATTGACTTGCACGCGT+AGG - chr3.3:80718593-80718612 None:intergenic 50.0%
ACCTCTGGTGCAGTATAGCC+TGG - chr3.3:80719759-80719778 None:intergenic 55.0%
ATCCCCTCCTTGGTCTCTGT+AGG - chr3.3:80719973-80719992 None:intergenic 55.0%
CCTCTGGTGCAGTATAGCCT+GGG - chr3.3:80719758-80719777 None:intergenic 55.0%
CTCTGGTGCAGTATAGCCTG+GGG - chr3.3:80719757-80719776 None:intergenic 55.0%
CTGCACCAGAGGTCTTGAAC+GGG + chr3.3:80719766-80719785 MS.gene049206:CDS 55.0%
CCCAGGCTATACTGCACCAG+AGG + chr3.3:80719755-80719774 MS.gene049206:CDS 60.0%
!! AAGCGGGGTGCCTCCGTTTT+GGG + chr3.3:80719845-80719864 MS.gene049206:CDS 60.0%
!! TAAGCGGGGTGCCTCCGTTT+TGG + chr3.3:80719844-80719863 MS.gene049206:CDS 60.0%
!! AGCGGGGTGCCTCCGTTTTG+GGG + chr3.3:80719846-80719865 MS.gene049206:CDS 65.0%
!!! GGGGTGCCTCCGTTTTGGGG+AGG + chr3.3:80719849-80719868 MS.gene049206:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 80718436 80720313 80718436 ID=MS.gene049206
chr3.3 mRNA 80718436 80720313 80718436 ID=MS.gene049206.t1;Parent=MS.gene049206
chr3.3 exon 80718436 80718847 80718436 ID=MS.gene049206.t1.exon1;Parent=MS.gene049206.t1
chr3.3 CDS 80718436 80718847 80718436 ID=cds.MS.gene049206.t1;Parent=MS.gene049206.t1
chr3.3 exon 80719727 80719870 80719727 ID=MS.gene049206.t1.exon2;Parent=MS.gene049206.t1
chr3.3 CDS 80719727 80719870 80719727 ID=cds.MS.gene049206.t1;Parent=MS.gene049206.t1
chr3.3 exon 80719977 80720129 80719977 ID=MS.gene049206.t1.exon3;Parent=MS.gene049206.t1
chr3.3 CDS 80719977 80720129 80719977 ID=cds.MS.gene049206.t1;Parent=MS.gene049206.t1
chr3.3 exon 80720237 80720313 80720237 ID=MS.gene049206.t1.exon4;Parent=MS.gene049206.t1
chr3.3 CDS 80720237 80720313 80720237 ID=cds.MS.gene049206.t1;Parent=MS.gene049206.t1
Gene Sequence

>MS.gene049206

ATGTTGGAATTGAACACCACAGTACCACCACAAAAACCATGGGTTCTCCCTTATTTTACAGAGAAATTCTGTCAAATCTACACGTTAGGTAGACAACTGGGCCAAGGTCAATTCGGCACCACATATCAGTGCACACACAATTCATCAGGTCGAACCTACGCGTGCAAGTCAATCTCAAAGATGAAACTATTACGCATTGAGGATTACGATGATGTTCTGAGAGAGGTTCTAATAATGCAACATTTATCAAAAAGCGAAAACTTTGTGAAAATCCATGGTATCTATGAAGATTTATTTTCTTTTCACTTGGTTATGGAGCTGTGTGAAGGTGGTGAGTTGTTTGATAGGATTGTGAAGAAGGGGCGTTATAGTGAGAGAAAAGCTGCCAAATTGATTAGAAATATAGTTGAGGGTATTGAAGATTGTCATTCTAATGGGGTTATGCATAGAGACCTTAAACCTGATAACCTTGTGTTTGATACTGCTAAAAAAGATGCAACTCTCAAAATTATTGATTTTGGGTTGTCTACTTTTTACAAGCCAGGTTTTTTTTTTCTTTCTTTTTTCTCTCTATGCTTTCTATTTCGATCAAATTCTGTGTGATTGGTAAAATTGATGAATGATGCGATGATGATTCTGCATCTTTTACAAACGAGGGAAATTTTTTTGTTCTAAAGAAATTATTTTAAATTTTGGTGGAGCTATGATTTGAATCTTGTTGTTTTGGTTGTATATCTAGTAATTAGAGTTTGACAATGAAATCTCAAAGAGTATACAGTGTATACACATACACTACACTACACATTTGTTGTAGAGTTCCTAATTGATGGGGTGGTTCAAATTTGGAAATATATCTTTTCTTTCTGTACCATGATTTGTAGCACGAACACAAACCTGAACACGACACTAACATTGACATGGATATTATTTTTTTTTGTTGAGAAAATGACATACTTAATTATAATCGTATCAGCGCATTGTCGGTGTCGGACATGATACGTCAGACACTGTCCGTGACTCATATAGCACTAGACTATGGCTTTCTTTGTTGAGAGTCATTTTACTGTGTTCAATCAACTGAGGCCAAATATATAGTATGCTTGTTGAGGAAATAAATGGAGGGTACTCAAATGGGAAAAGTGCTCAAATTGAACTTTTCGTTAACAATGAAATCTGAAGCTTGTCTTGTATCTACAATTTGATTTTTCACAGTAGTTACTTTCATTCATTACCATATCAACCATAAGCCCTTTCATGATACATATACTTAACAAATTGATGTGATTTTCAGGTGAAACATTTAGTCAAGTTGTTGGAACCCCAGGCTATACTGCACCAGAGGTCTTGAACGGGCATTATGGACCTGAAGCAGACATTTGGAGTGCCGGCGTTATTTTGTACTTCTTATTAAGCGGGGTGCCTCCGTTTTGGGGAGGTAAATTATCATTAGTTGATGTAGGCCGTAGGCATGTCACTGTTTTCATTATCTTCATCTTTCACCAGTAATGCTAATATTATGCTGCAATTTTTTTAACCTACAGAGACCAAGGAGGGGATCAACAAACAGATTTTGCAAGGAAGGCTTGATTTGCAGTCTAAGCCGTGGCCTTCAATTTCAGACGGTGCCAAGGATCTACTTCGAAAAATGCTTGAAAGGAATCCGGAGAAAAGGTTCACAGCTCATCAAGTGCTCAGTAAGTCTAAACTTCCTTATAGAGCAAGTATCTTATTTATATGAATATTTGAATAATTATCACAACGAGGTTGAAAGTTATAGAGCTTATGTGGTTTTTTGTGGCAGGTCACCCATGGATTGTCGACGACAGAAGTAGATCATACAAAAAATTAGGATGGAAGTGGTTTTCCTGTTGTCTATAA
Protein sequence

>MS.gene049206.t1

MLELNTTVPPQKPWVLPYFTEKFCQIYTLGRQLGQGQFGTTYQCTHNSSGRTYACKSISKMKLLRIEDYDDVLREVLIMQHLSKSENFVKIHGIYEDLFSFHLVMELCEGGELFDRIVKKGRYSERKAAKLIRNIVEGETFSQVVGTPGYTAPEVLNGHYGPEADIWSAGVILYFLLSGVPPFWGETKEGINKQILQGRLDLQSKPWPSISDGAKDLLRKMLERNPEKRFTAHQVLSHPWIVDDRSRSYKKLGWKWFSCCL