AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049430.t1 MTR_3g093540 91.085 258 18 3 1 255 1 256 1.32e-165 458
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049430.t1 AT4G19985 48.052 231 89 5 17 223 14 237 5.55e-66 205
MS.gene049430.t1 AT4G19985 48.052 231 89 5 17 223 14 237 5.55e-66 205
MS.gene049430.t1 AT4G19985 42.205 263 89 6 17 223 14 269 7.56e-59 188
MS.gene049430.t1 AT4G19985 39.881 168 70 5 17 160 14 174 2.69e-29 109
MS.gene049430.t1 AT4G19985 39.881 168 70 5 17 160 14 174 2.69e-29 109
MS.gene049430.t1 AT4G19985 39.881 168 70 5 17 160 14 174 2.69e-29 109
MS.gene049430.t1 AT4G19985 39.181 171 73 5 17 163 14 177 3.28e-29 109

Find 56 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAATCAATGGAATTAAAA+TGG 0.164701 3.3:+77939832 MS.gene049430:CDS
GGTCGTGCTGTTTCTGATTT+TGG 0.179788 3.3:+77940212 MS.gene049430:CDS
TGGATTTGGTGGTGACATTT+TGG 0.201084 3.3:+77941888 MS.gene049430:CDS
TGACGGTTTGCTCACTTTCC+TGG 0.248718 3.3:-77941954 None:intergenic
TTTGGAGATGTTGAGGATTA+AGG 0.248880 3.3:-77939953 None:intergenic
CAGGAGTGTCGGAGATATTA+AGG 0.273878 3.3:-77940019 None:intergenic
TGCAAATGGAGCAGAGGTTT+TGG 0.278048 3.3:-77939971 None:intergenic
CCTCACCACATTGATGTTGA+TGG 0.296205 3.3:+77940113 MS.gene049430:CDS
CCTGAACGTGATTTGTTGAT+TGG 0.298630 3.3:+77940185 MS.gene049430:CDS
ATTAAGGTGGTGTGGGTTAG+TGG 0.360151 3.3:-77939937 None:intergenic
TTGTTGATATCAACTGGTTC+AGG 0.374194 3.3:-77940038 None:intergenic
CGTGATTTGTTGATTGGGTT+TGG 0.384811 3.3:+77940191 MS.gene049430:CDS
CGAAGCTTGTTGATATCAAC+TGG 0.398400 3.3:-77940044 None:intergenic
CTGAACGTGATTTGTTGATT+GGG 0.419104 3.3:+77940186 MS.gene049430:CDS
TGCTTCTATATACGATGTTA+TGG 0.428860 3.3:+77940241 MS.gene049430:CDS
GGAAATGAAAAGTGAGAGAA+GGG 0.429093 3.3:-77939916 None:intergenic
TATTCCATCCTTGAGGAGAA+TGG 0.433471 3.3:+77940853 MS.gene049430:CDS
TCCTTGAGGAGAATGGGAAT+TGG 0.440922 3.3:+77940860 MS.gene049430:CDS
ATTCCATCCTTGAGGAGAAT+GGG 0.454926 3.3:+77940854 MS.gene049430:CDS
GTGTCGGAGATATTAAGGTT+GGG 0.458757 3.3:-77940014 None:intergenic
CCAATCAACAAATCACGTTC+AGG 0.463909 3.3:-77940185 None:intergenic
CCTCTCATCCTCTGAGCAAA+GGG 0.464970 3.3:-77941772 None:intergenic
GAAATCAATGGAATTAAAAT+GGG 0.468872 3.3:+77939833 MS.gene049430:CDS
GAGCAAACCGTCACATCTGC+AGG 0.476346 3.3:+77941964 MS.gene049430:CDS
AAATCACGTTCAGGAGAAAC+CGG 0.482910 3.3:-77940176 None:intergenic
TTTAAGGCTTGTGGATTTGG+TGG 0.483526 3.3:+77941877 MS.gene049430:CDS
TCCAATTCCCATTCTCCTCA+AGG 0.504293 3.3:-77940861 None:intergenic
GTGAAAAGAGTGGTTGCAAA+TGG 0.508457 3.3:-77939985 None:intergenic
GCGGAACCAACAATAGCTTT+CGG 0.512055 3.3:-77941987 None:intergenic
TGCAGGCCGAAAGCTATTGT+TGG 0.512613 3.3:+77941981 MS.gene049430:CDS
AACTGTTTCATCAACAATCC+AGG 0.512965 3.3:+77941936 MS.gene049430:CDS
TGTCGGAGATATTAAGGTTG+GGG 0.519931 3.3:-77940013 None:intergenic
ACCTCTCATCCTCTGAGCAA+AGG 0.534812 3.3:-77941773 None:intergenic
CTTTCGGCCTGCAGATGTGA+CGG 0.536642 3.3:-77941971 None:intergenic
CCCTTTGCTCAGAGGATGAG+AGG 0.537381 3.3:+77941772 MS.gene049430:CDS
TGGAAATGAAAAGTGAGAGA+AGG 0.540619 3.3:-77939917 None:intergenic
AGTGTCGGAGATATTAAGGT+TGG 0.549755 3.3:-77940015 None:intergenic
ATCAACTGGTTCAGGAGTGT+CGG 0.554412 3.3:-77940030 None:intergenic
TGTTGAGGATTAAGGTGGTG+TGG 0.555356 3.3:-77939945 None:intergenic
AACAGTTCTCGTGTACATCA+TGG 0.561270 3.3:-77941920 None:intergenic
GTTGAGGATTAAGGTGGTGT+GGG 0.570563 3.3:-77939944 None:intergenic
ATTCCCATTCTCCTCAAGGA+TGG 0.579989 3.3:-77940857 None:intergenic
GGAGATGTTGAGGATTAAGG+TGG 0.587846 3.3:-77939950 None:intergenic
TGCAGGTTATTCCATCCTTG+AGG 0.587883 3.3:+77940846 MS.gene049430:intron
ACTCAATATTATCGTCCTTG+AGG 0.598802 3.3:-77942033 None:intergenic
GACAGATTCAAGAATCCTCA+AGG 0.610174 3.3:+77942018 MS.gene049430:CDS
CATAGCAGCCCTTTGCTCAG+AGG 0.625766 3.3:+77941764 MS.gene049430:CDS
AGTGGTTGCAAATGGAGCAG+AGG 0.626606 3.3:-77939977 None:intergenic
TTTCGAAGCGAAAACTTCAG+TGG 0.633639 3.3:-77939814 None:intergenic
TTCTTGAATCTGTCAATCAG+AGG 0.641603 3.3:-77942009 None:intergenic
CCATCAACATCAATGTGGTG+AGG 0.651681 3.3:-77940113 None:intergenic
TGGGGAATCTGTGAAAAGAG+TGG 0.656361 3.3:-77939995 None:intergenic
TTGAATCTGTCAATCAGAGG+CGG 0.671155 3.3:-77942006 None:intergenic
TGATTGTTAGAAAAGTTGTG+AGG 0.694957 3.3:+77940888 MS.gene049430:CDS
GAAATGAAAAGTGAGAGAAG+GGG 0.710310 3.3:-77939915 None:intergenic
TTAAACCATCAACATCAATG+TGG 0.739906 3.3:-77940118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG + chr3.3:77941298-77941317 MS.gene049430:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr3.3:77941297-77941316 MS.gene049430:intron 10.0%
!! AATTAGAGTTATATTGTATT+GGG + chr3.3:77941363-77941382 MS.gene049430:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr3.3:77941299-77941318 MS.gene049430:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr3.3:77941362-77941381 MS.gene049430:intron 15.0%
!! AAAGTGGAATATATTGTATT+GGG + chr3.3:77941322-77941341 MS.gene049430:intron 20.0%
!! ATTGTCAGTTATTGTAATTA+TGG - chr3.3:77940430-77940449 None:intergenic 20.0%
!! GAAATCAATGGAATTAAAAT+GGG + chr3.3:77939833-77939852 MS.gene049430:CDS 20.0%
!!! ATTTTGGTTATTTTGTTTCT+GGG + chr3.3:77940370-77940389 MS.gene049430:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr3.3:77941432-77941451 MS.gene049430:intron 20.0%
!!! TATTTTGGTTATTTTGTTTC+TGG + chr3.3:77940369-77940388 MS.gene049430:intron 20.0%
!!! TCTTTGTTTTGAAAAAATGT+AGG - chr3.3:77940276-77940295 None:intergenic 20.0%
!!! TGAAATGACTCAATTATTTT+GGG + chr3.3:77941410-77941429 MS.gene049430:intron 20.0%
!!! TTGAAATGACTCAATTATTT+TGG + chr3.3:77941409-77941428 MS.gene049430:intron 20.0%
!!! TTTTTCCCTTTTTCAATATT+TGG + chr3.3:77940751-77940770 MS.gene049430:intron 20.0%
! AAGTTCCAAATATCTGAATA+TGG + chr3.3:77941702-77941721 MS.gene049430:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr3.3:77940684-77940703 MS.gene049430:intron 25.0%
! AATATAAAGGGTTGTGTATA+AGG + chr3.3:77941645-77941664 MS.gene049430:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG + chr3.3:77940685-77940704 MS.gene049430:intron 25.0%
! ATAGACCATATTCAGATATT+TGG - chr3.3:77941710-77941729 None:intergenic 25.0%
! ATATAAAGGGTTGTGTATAA+GGG + chr3.3:77941646-77941665 MS.gene049430:intron 25.0%
! ATGAGTTCAATTTCATATCT+TGG + chr3.3:77940332-77940351 MS.gene049430:intron 25.0%
! CAATGCCAAATATTGAAAAA+GGG - chr3.3:77940759-77940778 None:intergenic 25.0%
! CGAAATCAATGGAATTAAAA+TGG + chr3.3:77939832-77939851 MS.gene049430:CDS 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr3.3:77941321-77941340 MS.gene049430:intron 25.0%
! TAAGTCAAATTAAACCTTGT+AGG + chr3.3:77941578-77941597 MS.gene049430:intron 25.0%
! TCAATGCCAAATATTGAAAA+AGG - chr3.3:77940760-77940779 None:intergenic 25.0%
! TTGAATTTAATCACATGTGT+CGG + chr3.3:77941179-77941198 MS.gene049430:intron 25.0%
!! ACATGTTTTTCATTAACAAC+AGG - chr3.3:77940727-77940746 None:intergenic 25.0%
!! ATCATTCATGAAGTTTTTGT+TGG + chr3.3:77941027-77941046 MS.gene049430:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr3.3:77941431-77941450 MS.gene049430:intron 25.0%
!!! TTTTCTCAGGTTGTTTTTTA+AGG + chr3.3:77941861-77941880 MS.gene049430:intron 25.0%
AAACAGTCTCACAATACTTA+TGG - chr3.3:77940541-77940560 None:intergenic 30.0%
AACAGCTTAGCTTATACAAT+AGG + chr3.3:77940641-77940660 MS.gene049430:intron 30.0%
ACATCAATTACTGTTCACAA+AGG - chr3.3:77941833-77941852 None:intergenic 30.0%
ACTAACTATTTATGCCTGTT+TGG + chr3.3:77940489-77940508 MS.gene049430:intron 30.0%
ATTAGAATCTCATCAGCAAA+AGG - chr3.3:77941007-77941026 None:intergenic 30.0%
ATTGAATCATCACAGAAGAT+AGG - chr3.3:77940931-77940950 None:intergenic 30.0%
ATTGATCTTTAACCAGAGAT+GGG - chr3.3:77941677-77941696 None:intergenic 30.0%
CATCAATTACTGTTCACAAA+GGG - chr3.3:77941832-77941851 None:intergenic 30.0%
CTTGTAGGAGTTGAATATAA+GGG + chr3.3:77941593-77941612 MS.gene049430:intron 30.0%
GCAATAAAAGCTGTCATATT+GGG + chr3.3:77941526-77941545 MS.gene049430:intron 30.0%
TATAAGATATAAGCCCTGTT+TGG - chr3.3:77940701-77940720 None:intergenic 30.0%
TATTGATCTTTAACCAGAGA+TGG - chr3.3:77941678-77941697 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr3.3:77940506-77940525 None:intergenic 30.0%
TGATTGTTAGAAAAGTTGTG+AGG + chr3.3:77940888-77940907 MS.gene049430:CDS 30.0%
TGCAATAAAAGCTGTCATAT+TGG + chr3.3:77941525-77941544 MS.gene049430:intron 30.0%
TGCTTCTATATACGATGTTA+TGG + chr3.3:77940241-77940260 MS.gene049430:CDS 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr3.3:77941306-77941325 MS.gene049430:intron 30.0%
TTAAACCATCAACATCAATG+TGG - chr3.3:77940121-77940140 None:intergenic 30.0%
TTGTAGGAGTTGAATATAAG+GGG + chr3.3:77941594-77941613 MS.gene049430:intron 30.0%
TTGTTCATTATTCCTCTACA+TGG + chr3.3:77941795-77941814 MS.gene049430:intron 30.0%
! CAATTTCATATCTTGGTTCT+TGG + chr3.3:77940339-77940358 MS.gene049430:intron 30.0%
! GTTCTTGGCTATCATTATTT+TGG + chr3.3:77940354-77940373 MS.gene049430:intron 30.0%
! TTTCTGGGTTTTCTTAGTTT+TGG + chr3.3:77940385-77940404 MS.gene049430:intron 30.0%
! TTTTTGTTGGCATAGAGTTT+TGG + chr3.3:77941040-77941059 MS.gene049430:intron 30.0%
!! AGCTAAGCTGTTTTCTATTT+TGG - chr3.3:77940633-77940652 None:intergenic 30.0%
!! CAATATTTGGCATTGATTTG+AGG + chr3.3:77940764-77940783 MS.gene049430:intron 30.0%
!! TAAGTATTGTGAGACTGTTT+TGG + chr3.3:77940541-77940560 MS.gene049430:intron 30.0%
!! TTCTGGGTTTTCTTAGTTTT+GGG + chr3.3:77940386-77940405 MS.gene049430:intron 30.0%
!! TTTTTGTTTGTGTGTGGTTT+TGG - chr3.3:77939883-77939902 None:intergenic 30.0%
!!! TTTTTTAAGGCTTGTGGATT+TGG + chr3.3:77941874-77941893 MS.gene049430:CDS 30.0%
AACTGTTTCATCAACAATCC+AGG + chr3.3:77941936-77941955 MS.gene049430:CDS 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr3.3:77941445-77941464 MS.gene049430:intron 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr3.3:77941277-77941296 None:intergenic 35.0%
CCTTATATTCAACTCCTACA+AGG - chr3.3:77941595-77941614 None:intergenic 35.0%
CCTTGTAGGAGTTGAATATA+AGG + chr3.3:77941592-77941611 MS.gene049430:intron 35.0%
GAAATGAAAAGTGAGAGAAG+GGG - chr3.3:77939918-77939937 None:intergenic 35.0%
GATAAAACTAGACCATGTAG+AGG - chr3.3:77941810-77941829 None:intergenic 35.0%
GGAAATGAAAAGTGAGAGAA+GGG - chr3.3:77939919-77939938 None:intergenic 35.0%
TGGAAATGAAAAGTGAGAGA+AGG - chr3.3:77939920-77939939 None:intergenic 35.0%
TTCTGTGATGATTCAATGCA+TGG + chr3.3:77940934-77940953 MS.gene049430:intron 35.0%
TTCTTGAATCTGTCAATCAG+AGG - chr3.3:77942012-77942031 None:intergenic 35.0%
TTTGGAGATGTTGAGGATTA+AGG - chr3.3:77939956-77939975 None:intergenic 35.0%
! AGTTTTCGCTTCGAAATCAA+TGG + chr3.3:77939821-77939840 MS.gene049430:CDS 35.0%
! TGAAAGTGAGTATCTAGTTC+AGG - chr3.3:77940962-77940981 None:intergenic 35.0%
! TTGTTGATATCAACTGGTTC+AGG - chr3.3:77940041-77940060 None:intergenic 35.0%
!! CTGAACGTGATTTGTTGATT+GGG + chr3.3:77940186-77940205 MS.gene049430:CDS 35.0%
!!! AGGTTGTTTTTTAAGGCTTG+TGG + chr3.3:77941868-77941887 MS.gene049430:intron 35.0%
!!! CATTGTTGATTTTTTCACGC+CGG + chr3.3:77940157-77940176 MS.gene049430:CDS 35.0%
!!! TAGCGTTTTTTGTTTGTGTG+TGG - chr3.3:77939889-77939908 None:intergenic 35.0%
AAATCACGTTCAGGAGAAAC+CGG - chr3.3:77940179-77940198 None:intergenic 40.0%
AACAGTTCTCGTGTACATCA+TGG - chr3.3:77941923-77941942 None:intergenic 40.0%
ATTCCATCCTTGAGGAGAAT+GGG + chr3.3:77940854-77940873 MS.gene049430:CDS 40.0%
CATCACAGAAGATAGGCAAA+AGG - chr3.3:77940924-77940943 None:intergenic 40.0%
CCAATCAACAAATCACGTTC+AGG - chr3.3:77940188-77940207 None:intergenic 40.0%
CGGCGTGAAAAAATCAACAA+TGG - chr3.3:77940159-77940178 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr3.3:77941446-77941465 MS.gene049430:intron 40.0%
GAATAATGCCCGTCAACTAT+GGG - chr3.3:77940809-77940828 None:intergenic 40.0%
GACAGATTCAAGAATCCTCA+AGG + chr3.3:77942018-77942037 MS.gene049430:CDS 40.0%
GTCGATGTGTAAGTGTGTAT+TGG - chr3.3:77941130-77941149 None:intergenic 40.0%
GTGAAAAGAGTGGTTGCAAA+TGG - chr3.3:77939988-77940007 None:intergenic 40.0%
GTGTCGGAGATATTAAGGTT+GGG - chr3.3:77940017-77940036 None:intergenic 40.0%
TATTCCATCCTTGAGGAGAA+TGG + chr3.3:77940853-77940872 MS.gene049430:CDS 40.0%
TGAATAATGCCCGTCAACTA+TGG - chr3.3:77940810-77940829 None:intergenic 40.0%
TGTCGGAGATATTAAGGTTG+GGG - chr3.3:77940016-77940035 None:intergenic 40.0%
TTGAATCTGTCAATCAGAGG+CGG - chr3.3:77942009-77942028 None:intergenic 40.0%
TTTCGAAGCGAAAACTTCAG+TGG - chr3.3:77939817-77939836 None:intergenic 40.0%
! AGTGTCGGAGATATTAAGGT+TGG - chr3.3:77940018-77940037 None:intergenic 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr3.3:77941262-77941281 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr3.3:77941263-77941282 None:intergenic 40.0%
! TCTACTATGAGGCACTAACA+CGG + chr3.3:77941101-77941120 MS.gene049430:intron 40.0%
! TTGCGTTTTCCCATAGTTGA+CGG + chr3.3:77940797-77940816 MS.gene049430:intron 40.0%
! TTTAAGGCTTGTGGATTTGG+TGG + chr3.3:77941877-77941896 MS.gene049430:CDS 40.0%
!! CCTGAACGTGATTTGTTGAT+TGG + chr3.3:77940185-77940204 MS.gene049430:CDS 40.0%
!! CGAAGCTTGTTGATATCAAC+TGG - chr3.3:77940047-77940066 None:intergenic 40.0%
!! CGTGATTTGTTGATTGGGTT+TGG + chr3.3:77940191-77940210 MS.gene049430:CDS 40.0%
!! GATGTTCTCGACTTTTTCTC+AGG + chr3.3:77941848-77941867 MS.gene049430:intron 40.0%
!!! TGGATTTGGTGGTGACATTT+TGG + chr3.3:77941888-77941907 MS.gene049430:CDS 40.0%
AACATGCTTCAGTGTCTTGC+AGG + chr3.3:77940829-77940848 MS.gene049430:intron 45.0%
ATAAGGGTTCTTCCCATCTC+TGG + chr3.3:77941662-77941681 MS.gene049430:intron 45.0%
ATTCCCATTCTCCTCAAGGA+TGG - chr3.3:77940860-77940879 None:intergenic 45.0%
CCATCAACATCAATGTGGTG+AGG - chr3.3:77940116-77940135 None:intergenic 45.0%
CCTCACCACATTGATGTTGA+TGG + chr3.3:77940113-77940132 MS.gene049430:CDS 45.0%
CTCAGATAAAACGGGACGAA+GGG - chr3.3:77941254-77941273 None:intergenic 45.0%
GCACCAACGCTTCTAATTGA+TGG - chr3.3:77941223-77941242 None:intergenic 45.0%
GCGGAACCAACAATAGCTTT+CGG - chr3.3:77941990-77942009 None:intergenic 45.0%
GGAGATGTTGAGGATTAAGG+TGG - chr3.3:77939953-77939972 None:intergenic 45.0%
GTTGAGGATTAAGGTGGTGT+GGG - chr3.3:77939947-77939966 None:intergenic 45.0%
TCACGTCAGTCTCTACTATG+AGG + chr3.3:77941090-77941109 MS.gene049430:intron 45.0%
TCCAATTCCCATTCTCCTCA+AGG - chr3.3:77940864-77940883 None:intergenic 45.0%
TCCTTGAGGAGAATGGGAAT+TGG + chr3.3:77940860-77940879 MS.gene049430:CDS 45.0%
TGCAGGTTATTCCATCCTTG+AGG + chr3.3:77940846-77940865 MS.gene049430:intron 45.0%
TGGGGAATCTGTGAAAAGAG+TGG - chr3.3:77939998-77940017 None:intergenic 45.0%
TGTTGAGGATTAAGGTGGTG+TGG - chr3.3:77939948-77939967 None:intergenic 45.0%
! ACGCCATCAATTAGAAGCGT+TGG + chr3.3:77941217-77941236 MS.gene049430:intron 45.0%
! ATCAACTGGTTCAGGAGTGT+CGG - chr3.3:77940033-77940052 None:intergenic 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr3.3:77941260-77941279 MS.gene049430:intron 45.0%
! TGCAAATGGAGCAGAGGTTT+TGG - chr3.3:77939974-77939993 None:intergenic 45.0%
! TGCGTTTTCCCATAGTTGAC+GGG + chr3.3:77940798-77940817 MS.gene049430:intron 45.0%
!! ATTAAGGTGGTGTGGGTTAG+TGG - chr3.3:77939940-77939959 None:intergenic 45.0%
!! CAGGAGTGTCGGAGATATTA+AGG - chr3.3:77940022-77940041 None:intergenic 45.0%
!!! CAGAGGTTTTGGAGATGTTG+AGG - chr3.3:77939963-77939982 None:intergenic 45.0%
!!! GGTCGTGCTGTTTCTGATTT+TGG + chr3.3:77940212-77940231 MS.gene049430:CDS 45.0%
!! AAAAAAAAAAACAAATATAA+AGG + chr3.3:77941632-77941651 MS.gene049430:intron 5.0%
!! AAAAAAAAAACAAATATAAA+GGG + chr3.3:77941633-77941652 MS.gene049430:intron 5.0%
!!! TTTGTTTTTTTTTTTTAAAT+TGG - chr3.3:77941627-77941646 None:intergenic 5.0%
ACCTCTCATCCTCTGAGCAA+AGG - chr3.3:77941776-77941795 None:intergenic 50.0%
AGTAGAGACTGACGTGAGTG+AGG - chr3.3:77941087-77941106 None:intergenic 50.0%
AGTGGTTGCAAATGGAGCAG+AGG - chr3.3:77939980-77939999 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr3.3:77941450-77941469 MS.gene049430:intron 50.0%
CCTCTCATCCTCTGAGCAAA+GGG - chr3.3:77941775-77941794 None:intergenic 50.0%
GCTCAGATAAAACGGGACGA+AGG - chr3.3:77941255-77941274 None:intergenic 50.0%
GTAGAGACTGACGTGAGTGA+GGG - chr3.3:77941086-77941105 None:intergenic 50.0%
TGCAGGCCGAAAGCTATTGT+TGG + chr3.3:77941981-77942000 MS.gene049430:CDS 50.0%
! TGACGGTTTGCTCACTTTCC+TGG - chr3.3:77941957-77941976 None:intergenic 50.0%
CATAGCAGCCCTTTGCTCAG+AGG + chr3.3:77941764-77941783 MS.gene049430:CDS 55.0%
CCCTTTGCTCAGAGGATGAG+AGG + chr3.3:77941772-77941791 MS.gene049430:CDS 55.0%
CTTTCGGCCTGCAGATGTGA+CGG - chr3.3:77941974-77941993 None:intergenic 55.0%
GACGGAGGGAGTAGTTCTCT+AGG + chr3.3:77941468-77941487 MS.gene049430:intron 55.0%
GAGCAAACCGTCACATCTGC+AGG + chr3.3:77941964-77941983 MS.gene049430:CDS 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr3.3:77941454-77941473 MS.gene049430:intron 55.0%
GAGAACTACTCCCTCCGTCC+CGG - chr3.3:77941467-77941486 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr3.3:77941453-77941472 MS.gene049430:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 77939789 77942047 77939789 ID=MS.gene049430
chr3.3 mRNA 77939789 77942047 77939789 ID=MS.gene049430.t1;Parent=MS.gene049430
chr3.3 exon 77939789 77940262 77939789 ID=MS.gene049430.t1.exon1;Parent=MS.gene049430.t1
chr3.3 CDS 77939789 77940262 77939789 ID=cds.MS.gene049430.t1;Parent=MS.gene049430.t1
chr3.3 exon 77940851 77940909 77940851 ID=MS.gene049430.t1.exon2;Parent=MS.gene049430.t1
chr3.3 CDS 77940851 77940909 77940851 ID=cds.MS.gene049430.t1;Parent=MS.gene049430.t1
chr3.3 exon 77941737 77941793 77941737 ID=MS.gene049430.t1.exon3;Parent=MS.gene049430.t1
chr3.3 CDS 77941737 77941793 77941737 ID=cds.MS.gene049430.t1;Parent=MS.gene049430.t1
chr3.3 exon 77941870 77942047 77941870 ID=MS.gene049430.t1.exon4;Parent=MS.gene049430.t1
chr3.3 CDS 77941870 77942047 77941870 ID=cds.MS.gene049430.t1;Parent=MS.gene049430.t1
Gene Sequence

>MS.gene049430

ATGGCGGCAACAGGAGTTGCAGCAGCCACTGAAGTTTTCGCTTCGAAATCAATGGAATTAAAATGGGTAAGAACAAGAACAAGAAGAATCACCAAAACCACACACAAACAAAAAACGCTATCAACACCCCTTCTCTCACTTTTCATTTCCACTAACCCACACCACCTTAATCCTCAACATCTCCAAAACCTCTGCTCCATTTGCAACCACTCTTTTCACAGATTCCCCAACCTTAATATCTCCGACACTCCTGAACCAGTTGATATCAACAAGCTTCGCATTGCTCTTTCTCATAGTGACGTTCTTGTCTCTGTCTTCTGTAAACCTCACCACATTGATGTTGATGGTTTAACTGAATCTTCATCTTCCATTGTTGATTTTTTCACGCCGGTTTCTCCTGAACGTGATTTGTTGATTGGGTTTGGTCGTGCTGTTTCTGATTTTGGTCTCACTGCTTCTATATACGATGTTATGGTAACACTTTCCTACATTTTTTCAAAACAAAGACAAAGAAAGAAACTTTTTATGCTTTCTTAATAGCTCATGAGTTCAATTTCATATCTTGGTTCTTGGCTATCATTATTTTGGTTATTTTGTTTCTGGGTTTTCTTAGTTTTGGGATTTTAACTGAATTTGTACCATAATTACAATAACTGACAATTCTAACTTTACTAATTAACGAGTGTAACTAATTATTGTAACTAACTATTTATGCCTGTTTGGATTGACTTATTTGAGTTTATCTACTGCCATAAGTATTGTGAGACTGTTTTGGTAAACTTATAAAAACAACTTTATGACATTGTTCATAAGCTGTTTTCAGCTTATTTTCAGAAGTTATCCAAAATAGAAAACAGCTTAGCTTATACAATAGGCGTTTGTGCTATAAGCTGCAAATAAGTTGTTTATCCAAACAGGGCTTATATCTTATAGTACCTGTTGTTAATGAAAAACATGTTTTGTTTTTCCCTTTTTCAATATTTGGCATTGATTTGAGGATACTGAATTTTGCGTTTTCCCATAGTTGACGGGCATTATTCAACATGCTTCAGTGTCTTGCAGGTTATTCCATCCTTGAGGAGAATGGGAATTGGAAAAATGATTGTTAGAAAAGTTGTGAGGTATGTAAATACCTTTTGCCTATCTTCTGTGATGATTCAATGCATGGTTCCTGAACTAGATACTCACTTTCAGCATGCAGCATAGCAGATTGAACCTTTTGCTGATGAGATTCTAATATCATTCATGAAGTTTTTGTTGGCATAGAGTTTTGGTTTGATGTTTGCTTAGTTTGCCCTCACTCACGTCAGTCTCTACTATGAGGCACTAACACGGACACCAATACACACTTACACATCGACACTAGTAATAATCTGAGAAAACAGAATAGTTGAATTTAATCACATGTGTCGGTGTCAGACATCTTAAACGCCATCAATTAGAAGCGTTGGTGCTACATACTCCCTTCGTCCCGTTTTATCTGAGCCAGTTTGGTTTTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATGAAAGTAGTATTAATTAGAGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGACTCAATTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGATATTCCGGGACGGAGGGAGTAGTTCTCTAGGTTGCAGCATTGTTATGTGTTTGAATTTTTGAATATGCAATAAAAGCTGTCATATTGGGAATAATATTGATGCTTTTAATTTGAAATCTAAGTCAAATTAAACCTTGTAGGAGTTGAATATAAGGGGTTGTTCACCAATTTAAAAAAAAAAAACAAATATAAAGGGTTGTGTATAAGGGTTCTTCCCATCTCTGGTTAAAGATCAATACAAAAAGTTCCAAATATCTGAATATGGTCTATTTTGCAGAATGCTTACAAATAGAGACATCTATGACATAGCAGCCCTTTGCTCAGAGGATGAGAGGTTGTTCATTATTCCTCTACATGGTCTAGTTTTATCCCTTTGTGAACAGTAATTGATGTTCTCGACTTTTTCTCAGGTTGTTTTTTAAGGCTTGTGGATTTGGTGGTGACATTTTGGACTCTACTACCATGATGTACACGAGAACTGTTTCATCAACAATCCAGGAAAGTGAGCAAACCGTCACATCTGCAGGCCGAAAGCTATTGTTGGTTCCGCCTCTGATTGACAGATTCAAGAATCCTCAAGGACGATAA
Protein sequence

>MS.gene049430.t1

MAATGVAAATEVFASKSMELKWVRTRTRRITKTTHKQKTLSTPLLSLFISTNPHHLNPQHLQNLCSICNHSFHRFPNLNISDTPEPVDINKLRIALSHSDVLVSVFCKPHHIDVDGLTESSSSIVDFFTPVSPERDLLIGFGRAVSDFGLTASIYDVMVIPSLRRMGIGKMIVRKVVRMLTNRDIYDIAALCSEDERLFFKACGFGGDILDSTTMMYTRTVSSTIQESEQTVTSAGRKLLLVPPLIDRFKNPQGR