Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049458.t1 | XP_003599289.1 | 82.5 | 183 | 32 | 0 | 1 | 183 | 1 | 183 | 1.10E-78 | 302.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049458.t1 | Q9FJK3 | 38.9 | 157 | 95 | 1 | 1 | 157 | 1 | 156 | 2.3e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049458.t1 | G7J0M2 | 82.5 | 183 | 32 | 0 | 1 | 183 | 1 | 183 | 8.0e-79 | 302.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049458.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049458.t1 | MTR_3g031240 | 82.514 | 183 | 32 | 0 | 1 | 183 | 1 | 183 | 2.39e-101 | 290 |
| MS.gene049458.t1 | MTR_3g031100 | 49.701 | 167 | 84 | 0 | 1 | 167 | 1 | 167 | 6.13e-54 | 172 |
| MS.gene049458.t1 | MTR_3g466980 | 49.677 | 155 | 77 | 1 | 1 | 155 | 1 | 154 | 2.97e-49 | 159 |
| MS.gene049458.t1 | MTR_4g063790 | 45.732 | 164 | 89 | 0 | 1 | 164 | 1 | 164 | 1.21e-46 | 150 |
| MS.gene049458.t1 | MTR_3g467080 | 45.625 | 160 | 87 | 0 | 1 | 160 | 1 | 160 | 2.21e-43 | 142 |
| MS.gene049458.t1 | MTR_2g016210 | 43.030 | 165 | 94 | 0 | 1 | 165 | 1 | 165 | 4.88e-42 | 141 |
| MS.gene049458.t1 | MTR_4g032620 | 38.415 | 164 | 101 | 0 | 1 | 164 | 1 | 164 | 3.14e-38 | 131 |
| MS.gene049458.t1 | MTR_3g065100 | 42.038 | 157 | 90 | 1 | 1 | 157 | 1 | 156 | 1.08e-37 | 130 |
| MS.gene049458.t1 | MTR_3g466830 | 41.250 | 160 | 91 | 2 | 3 | 161 | 2 | 159 | 2.62e-37 | 127 |
| MS.gene049458.t1 | MTR_8g036130 | 39.634 | 164 | 97 | 1 | 1 | 162 | 1 | 164 | 2.51e-34 | 121 |
| MS.gene049458.t1 | MTR_3g466890 | 40.764 | 157 | 90 | 2 | 3 | 158 | 2 | 156 | 2.96e-33 | 116 |
| MS.gene049458.t1 | MTR_5g075380 | 37.013 | 154 | 96 | 1 | 1 | 154 | 1 | 153 | 2.25e-32 | 114 |
| MS.gene049458.t1 | MTR_4g031910 | 39.873 | 158 | 95 | 0 | 1 | 158 | 1 | 158 | 8.06e-32 | 114 |
| MS.gene049458.t1 | MTR_3g465410 | 41.912 | 136 | 79 | 0 | 29 | 164 | 1 | 136 | 2.88e-31 | 110 |
| MS.gene049458.t1 | MTR_1g090710 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 2.32e-29 | 106 |
| MS.gene049458.t1 | MTR_2g035580 | 36.774 | 155 | 97 | 1 | 1 | 155 | 1 | 154 | 2.46e-27 | 101 |
| MS.gene049458.t1 | MTR_4g032290 | 37.037 | 162 | 102 | 0 | 1 | 162 | 1 | 162 | 8.56e-27 | 101 |
| MS.gene049458.t1 | MTR_3g466930 | 40.310 | 129 | 74 | 2 | 31 | 158 | 1 | 127 | 8.94e-27 | 99.0 |
| MS.gene049458.t1 | MTR_3g466900 | 41.085 | 129 | 73 | 2 | 31 | 158 | 1 | 127 | 1.21e-26 | 98.6 |
| MS.gene049458.t1 | MTR_5g047580 | 36.875 | 160 | 93 | 3 | 1 | 157 | 1 | 155 | 1.95e-26 | 99.0 |
| MS.gene049458.t1 | MTR_2g035610 | 42.105 | 114 | 66 | 0 | 1 | 114 | 1 | 114 | 1.69e-25 | 95.5 |
| MS.gene049458.t1 | MTR_4g032260 | 34.839 | 155 | 101 | 0 | 1 | 155 | 1 | 155 | 2.91e-25 | 95.9 |
| MS.gene049458.t1 | MTR_1g077390 | 35.714 | 154 | 97 | 2 | 1 | 154 | 1 | 152 | 1.14e-24 | 94.4 |
| MS.gene049458.t1 | MTR_1g090783 | 36.306 | 157 | 96 | 3 | 3 | 158 | 2 | 155 | 1.45e-24 | 94.0 |
| MS.gene049458.t1 | MTR_1g090697 | 33.544 | 158 | 103 | 2 | 1 | 158 | 1 | 156 | 5.85e-24 | 92.4 |
| MS.gene049458.t1 | MTR_1g077300 | 37.662 | 154 | 92 | 2 | 1 | 154 | 1 | 150 | 2.50e-23 | 90.9 |
| MS.gene049458.t1 | MTR_1g084950 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 2.49e-22 | 88.2 |
| MS.gene049458.t1 | MTR_1g077320 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 4.80e-21 | 85.1 |
| MS.gene049458.t1 | MTR_7g011950 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 6.97e-21 | 84.7 |
| MS.gene049458.t1 | MTR_4g028720 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 2.39e-19 | 80.5 |
| MS.gene049458.t1 | MTR_4g028800 | 45.205 | 73 | 38 | 1 | 1 | 73 | 1 | 71 | 2.96e-19 | 77.8 |
| MS.gene049458.t1 | MTR_7g106510 | 29.915 | 117 | 82 | 0 | 3 | 119 | 6 | 122 | 1.82e-17 | 79.3 |
| MS.gene049458.t1 | MTR_4g019670 | 31.624 | 117 | 80 | 0 | 3 | 119 | 6 | 122 | 5.70e-17 | 78.2 |
| MS.gene049458.t1 | MTR_6g018920 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 3.45e-16 | 75.5 |
| MS.gene049458.t1 | MTR_1g114730 | 32.759 | 116 | 71 | 3 | 1 | 110 | 1 | 115 | 5.99e-16 | 74.7 |
| MS.gene049458.t1 | MTR_6g005450 | 31.858 | 113 | 70 | 3 | 1 | 107 | 1 | 112 | 4.57e-15 | 72.0 |
| MS.gene049458.t1 | MTR_4g107170 | 27.660 | 188 | 115 | 7 | 1 | 176 | 1 | 179 | 9.27e-14 | 67.8 |
| MS.gene049458.t1 | MTR_7g055800 | 31.579 | 114 | 50 | 2 | 1 | 114 | 1 | 86 | 1.48e-13 | 63.5 |
| MS.gene049458.t1 | MTR_6g005440 | 28.571 | 126 | 83 | 3 | 1 | 120 | 1 | 125 | 7.36e-13 | 65.9 |
| MS.gene049458.t1 | MTR_5g047560 | 33.884 | 121 | 63 | 2 | 1 | 121 | 1 | 104 | 8.17e-13 | 63.2 |
| MS.gene049458.t1 | MTR_3g093900 | 24.841 | 157 | 109 | 2 | 3 | 155 | 6 | 157 | 4.26e-12 | 63.9 |
| MS.gene049458.t1 | MTR_7g055790 | 33.028 | 109 | 55 | 1 | 3 | 111 | 61 | 151 | 6.27e-12 | 60.8 |
| MS.gene049458.t1 | MTR_7g075850 | 34.513 | 113 | 64 | 2 | 1 | 104 | 1 | 112 | 6.08e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049458.t1 | AT5G48670 | 39.623 | 159 | 91 | 2 | 1 | 157 | 1 | 156 | 2.56e-28 | 107 |
| MS.gene049458.t1 | AT3G05860 | 35.948 | 153 | 93 | 2 | 1 | 151 | 1 | 150 | 2.70e-27 | 102 |
| MS.gene049458.t1 | AT3G05860 | 35.714 | 154 | 94 | 2 | 1 | 152 | 1 | 151 | 7.91e-27 | 102 |
| MS.gene049458.t1 | AT3G05860 | 35.714 | 154 | 94 | 2 | 1 | 152 | 1 | 151 | 9.49e-27 | 102 |
| MS.gene049458.t1 | AT1G65330 | 33.333 | 156 | 101 | 2 | 3 | 157 | 2 | 155 | 3.38e-25 | 99.0 |
| MS.gene049458.t1 | AT1G65300 | 38.261 | 115 | 71 | 0 | 3 | 117 | 2 | 116 | 2.74e-24 | 96.3 |
| MS.gene049458.t1 | AT1G22590 | 31.737 | 167 | 98 | 2 | 1 | 161 | 1 | 157 | 4.92e-24 | 92.8 |
| MS.gene049458.t1 | AT2G28700 | 33.594 | 128 | 85 | 0 | 1 | 128 | 1 | 128 | 4.71e-23 | 94.0 |
| MS.gene049458.t1 | AT5G26650 | 36.842 | 114 | 72 | 0 | 4 | 117 | 2 | 115 | 3.62e-22 | 92.0 |
| MS.gene049458.t1 | AT5G27960 | 35.965 | 114 | 73 | 0 | 4 | 117 | 2 | 115 | 6.28e-22 | 90.9 |
| MS.gene049458.t1 | AT5G06500 | 32.639 | 144 | 80 | 3 | 1 | 142 | 1 | 129 | 9.71e-21 | 86.3 |
| MS.gene049458.t1 | AT5G27810 | 42.697 | 89 | 51 | 0 | 29 | 117 | 1 | 89 | 5.92e-20 | 81.3 |
| MS.gene049458.t1 | AT1G31630 | 33.913 | 115 | 75 | 1 | 3 | 117 | 2 | 115 | 1.17e-19 | 84.7 |
| MS.gene049458.t1 | AT5G26630 | 33.742 | 163 | 95 | 3 | 1 | 157 | 1 | 156 | 1.04e-18 | 80.5 |
| MS.gene049458.t1 | AT1G31640 | 33.913 | 115 | 75 | 1 | 3 | 117 | 2 | 115 | 3.11e-17 | 79.0 |
| MS.gene049458.t1 | AT2G40210 | 37.000 | 100 | 63 | 0 | 1 | 100 | 1 | 100 | 1.16e-16 | 77.0 |
| MS.gene049458.t1 | AT5G26580 | 31.624 | 117 | 66 | 2 | 1 | 117 | 1 | 103 | 1.57e-14 | 70.9 |
| MS.gene049458.t1 | AT1G77980 | 30.719 | 153 | 87 | 4 | 1 | 152 | 1 | 135 | 4.22e-12 | 63.9 |
| MS.gene049458.t1 | AT1G22130 | 39.759 | 83 | 49 | 1 | 1 | 83 | 1 | 82 | 9.45e-12 | 62.8 |
| MS.gene049458.t1 | AT2G03060 | 34.375 | 96 | 63 | 0 | 1 | 96 | 1 | 96 | 1.47e-11 | 62.4 |
| MS.gene049458.t1 | AT2G03060 | 34.375 | 96 | 63 | 0 | 1 | 96 | 1 | 96 | 1.47e-11 | 62.4 |
| MS.gene049458.t1 | AT2G03060 | 34.375 | 96 | 63 | 0 | 1 | 96 | 1 | 96 | 1.47e-11 | 62.4 |
| MS.gene049458.t1 | AT2G03060 | 34.375 | 96 | 63 | 0 | 1 | 96 | 1 | 96 | 1.53e-11 | 62.4 |
| MS.gene049458.t1 | AT1G18750 | 33.333 | 96 | 64 | 0 | 1 | 96 | 1 | 96 | 7.56e-11 | 60.5 |
| MS.gene049458.t1 | AT1G18750 | 33.333 | 96 | 64 | 0 | 1 | 96 | 1 | 96 | 8.35e-11 | 60.1 |
| MS.gene049458.t1 | AT1G18750 | 33.333 | 96 | 64 | 0 | 1 | 96 | 1 | 96 | 8.51e-11 | 60.1 |
Find 28 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAAAAGTTGGATTTAA+TGG | 0.132212 | 3.2:-56603754 | MS.gene049458:CDS |
| ATCAATTCCGTAACTTCATT+AGG | 0.314108 | 3.2:+56603798 | None:intergenic |
| AATCCATTAAATCCAACTTT+TGG | 0.339004 | 3.2:+56603751 | None:intergenic |
| GAGGTTTGGCCTTCTCCAAC+TGG | 0.351491 | 3.2:-56604038 | MS.gene049458:CDS |
| GAAGCTAGATAAAATTCATT+TGG | 0.361908 | 3.2:+56603681 | None:intergenic |
| TTCCGTAACTTCATTAGGAT+TGG | 0.432385 | 3.2:+56603803 | None:intergenic |
| AGATCAGTATCACAAAATAA+AGG | 0.442960 | 3.2:-56603910 | MS.gene049458:CDS |
| ACCATCATGAAGCTGAGGTT+TGG | 0.453221 | 3.2:-56604052 | MS.gene049458:CDS |
| AACGAATTGAGCATCCTTTG+TGG | 0.463741 | 3.2:-56604107 | MS.gene049458:CDS |
| CAATTGAATCCTCTTGAGCT+TGG | 0.465024 | 3.2:+56603727 | None:intergenic |
| ATTGATTAATGAGAAATTGA+AGG | 0.477565 | 3.2:-56603781 | MS.gene049458:CDS |
| GGAAAACAAGAAGAAAGAAA+TGG | 0.479640 | 3.2:-56603886 | MS.gene049458:CDS |
| GACCAATCCTAATGAAGTTA+CGG | 0.483524 | 3.2:-56603805 | MS.gene049458:CDS |
| GAAGGAAGTCTACCAAAAGT+TGG | 0.485133 | 3.2:-56603763 | MS.gene049458:CDS |
| GCCAAACCTCAGCTTCATGA+TGG | 0.527299 | 3.2:+56604051 | None:intergenic |
| AACACACTTTCTACTCCAGT+TGG | 0.540113 | 3.2:+56604023 | None:intergenic |
| CTTTCTACTCCAGTTGGAGA+AGG | 0.550442 | 3.2:+56604029 | None:intergenic |
| ATCATCAAAATTAAATTCAG+TGG | 0.561119 | 3.2:+56603836 | None:intergenic |
| CACTACTATGGGCAGAAGGA+AGG | 0.561138 | 3.2:-56605852 | None:intergenic |
| GAGTAGAAAGTGTGTTGTCA+AGG | 0.590342 | 3.2:-56604016 | MS.gene049458:CDS |
| TACTATGGGCAGAAGGAAGG+TGG | 0.600474 | 3.2:-56605849 | None:intergenic |
| TCAGTATCACAAAATAAAGG+TGG | 0.600615 | 3.2:-56603907 | MS.gene049458:CDS |
| TCATCACTACTATGGGCAGA+AGG | 0.612227 | 3.2:-56605856 | None:intergenic |
| AATGGATTTCCAAGCTCAAG+AGG | 0.613698 | 3.2:-56603736 | MS.gene049458:CDS |
| TGAAAACCATCATGAAGCTG+AGG | 0.619064 | 3.2:-56604057 | MS.gene049458:CDS |
| TAGTCAACAACTCAAAGCGG+AGG | 0.677810 | 3.2:-56605814 | MS.gene049458:CDS |
| CACAAGCATTGATACCACAA+AGG | 0.692894 | 3.2:+56604093 | None:intergenic |
| ACATAGTCAACAACTCAAAG+CGG | 0.715101 | 3.2:-56605817 | MS.gene049458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATAATTTTTTTTATA+AGG | - | chr3.2:56605136-56605155 | MS.gene049458:intron | 0.0% |
| !! | CAATTATGTATAAAAATAAA+TGG | + | chr3.2:56603948-56603967 | None:intergenic | 10.0% |
| !! | TTATCATGTTAAAAAAAAAA+AGG | + | chr3.2:56604224-56604243 | None:intergenic | 10.0% |
| !!! | ACTTATTTTACTTTTTTTTA+AGG | + | chr3.2:56604766-56604785 | None:intergenic | 10.0% |
| !!! | ACTTTTTATTTTATTTCTAA+TGG | + | chr3.2:56604009-56604028 | None:intergenic | 10.0% |
| !!! | ATTCATATATATTTTTCAAT+AGG | - | chr3.2:56605373-56605392 | MS.gene049458:intron | 10.0% |
| !!! | CTTATTTTACTTTTTTTTAA+GGG | + | chr3.2:56604765-56604784 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTATAGATTTG+AGG | - | chr3.2:56604655-56604674 | MS.gene049458:intron | 10.0% |
| !!! | TTCATATATATTTTTCAATA+GGG | - | chr3.2:56605374-56605393 | MS.gene049458:intron | 10.0% |
| !!! | AATAAGTCTTTTTTTTTTGA+AGG | - | chr3.2:56604473-56604492 | MS.gene049458:intron | 15.0% |
| !!! | CGTTCTTTATTTTATAAAAA+AGG | - | chr3.2:56604807-56604826 | MS.gene049458:intron | 15.0% |
| !!! | TTATAAAAAAGGTAATTTGT+TGG | - | chr3.2:56604818-56604837 | MS.gene049458:intron | 15.0% |
| !! | ACATCAAAATTGAATATTGT+TGG | - | chr3.2:56604321-56604340 | MS.gene049458:intron | 20.0% |
| !! | ATCATCAAAATTAAATTCAG+TGG | + | chr3.2:56605686-56605705 | None:intergenic | 20.0% |
| !! | ATTGATTAATGAGAAATTGA+AGG | - | chr3.2:56605738-56605757 | MS.gene049458:intron | 20.0% |
| !! | TACACAAAATCAAATATGAT+TGG | + | chr3.2:56604606-56604625 | None:intergenic | 20.0% |
| !! | TCCAAATCAAAATTTCAAAT+TGG | - | chr3.2:56604282-56604301 | MS.gene049458:intron | 20.0% |
| !! | TGATTATAATCTTTGACAAT+CGG | - | chr3.2:56603844-56603863 | MS.gene049458:CDS | 20.0% |
| !!! | AACGTTTTTTTAAATTGTTG+AGG | + | chr3.2:56604726-56604745 | None:intergenic | 20.0% |
| !!! | ACCAATTTGAAATTTTGATT+TGG | + | chr3.2:56604286-56604305 | None:intergenic | 20.0% |
| !!! | ACCATTTTTATTACAGAATT+AGG | - | chr3.2:56604099-56604118 | MS.gene049458:CDS | 20.0% |
| !!! | CCATTTTTATTACAGAATTA+GGG | - | chr3.2:56604100-56604119 | MS.gene049458:CDS | 20.0% |
| !!! | CTTATGGTTTGATAAATTTT+CGG | - | chr3.2:56605326-56605345 | MS.gene049458:intron | 20.0% |
| !!! | GAATATTGTTGGATATTTTT+GGG | - | chr3.2:56604332-56604351 | MS.gene049458:intron | 20.0% |
| !!! | GTGTAGTTTATTTTTTTTGA+AGG | - | chr3.2:56604621-56604640 | MS.gene049458:intron | 20.0% |
| !!! | TGAATATTGTTGGATATTTT+TGG | - | chr3.2:56604331-56604350 | MS.gene049458:intron | 20.0% |
| !!! | TTTTTTTATGTCATTTGTTC+TGG | + | chr3.2:56605162-56605181 | None:intergenic | 20.0% |
| !!! | TTTTTTTCATCTGTGAAAAA+TGG | + | chr3.2:56604155-56604174 | None:intergenic | 20.0% |
| ! | AAATCGTGTAAAATCGTTAA+TGG | - | chr3.2:56604172-56604191 | MS.gene049458:intron | 25.0% |
| ! | ACATTCAGAACAAGAAAAAA+TGG | - | chr3.2:56603731-56603750 | MS.gene049458:CDS | 25.0% |
| ! | AGATCAGTATCACAAAATAA+AGG | - | chr3.2:56605609-56605628 | MS.gene049458:intron | 25.0% |
| ! | CAAAGATTATAATCATAGTG+TGG | + | chr3.2:56603839-56603858 | None:intergenic | 25.0% |
| ! | CAAATGACATAAAAAAAGAG+TGG | - | chr3.2:56605165-56605184 | MS.gene049458:intron | 25.0% |
| ! | CCCTAATTCTGTAATAAAAA+TGG | + | chr3.2:56604103-56604122 | None:intergenic | 25.0% |
| ! | GAAGCTAGATAAAATTCATT+TGG | + | chr3.2:56605841-56605860 | None:intergenic | 25.0% |
| ! | TAAACAATTAGGGTAAGTTA+CGG | + | chr3.2:56605027-56605046 | None:intergenic | 25.0% |
| !! | AATCCATTAAATCCAACTTT+TGG | + | chr3.2:56605771-56605790 | None:intergenic | 25.0% |
| !!! | GTTTTTTTAAATTGTTGAGG+TGG | + | chr3.2:56604723-56604742 | None:intergenic | 25.0% |
| !!! | TAAAAAAGGTAATTTGTTGG+TGG | - | chr3.2:56604821-56604840 | MS.gene049458:intron | 25.0% |
| AAACAATTAGGGTAAGTTAC+GGG | + | chr3.2:56605026-56605045 | None:intergenic | 30.0% | |
| ATAAAGAACGAAAATCGTCA+TGG | + | chr3.2:56604797-56604816 | None:intergenic | 30.0% | |
| ATCAATTCCGTAACTTCATT+AGG | + | chr3.2:56605724-56605743 | None:intergenic | 30.0% | |
| ATCTGACAAAACATTAGAGT+TGG | + | chr3.2:56605210-56605229 | None:intergenic | 30.0% | |
| CTACCAAAAGTTGGATTTAA+TGG | - | chr3.2:56605765-56605784 | MS.gene049458:intron | 30.0% | |
| GGAAAACAAGAAGAAAGAAA+TGG | - | chr3.2:56605633-56605652 | MS.gene049458:intron | 30.0% | |
| TCAGTATCACAAAATAAAGG+TGG | - | chr3.2:56605612-56605631 | MS.gene049458:intron | 30.0% | |
| TCTGACAAAACATTAGAGTT+GGG | + | chr3.2:56605209-56605228 | None:intergenic | 30.0% | |
| TTAACATGATAAGCTGATGT+TGG | - | chr3.2:56604232-56604251 | MS.gene049458:intron | 30.0% | |
| ! | TACAGAATTAGGGTAAGTTT+TGG | - | chr3.2:56604110-56604129 | MS.gene049458:CDS | 30.0% |
| !!! | CCTTGTTCTTTTTTCATGTT+CGG | + | chr3.2:56605542-56605561 | None:intergenic | 30.0% |
| AATACTTCCATGACATTGCT+TGG | + | chr3.2:56605002-56605021 | None:intergenic | 35.0% | |
| ACATAGTCAACAACTCAAAG+CGG | - | chr3.2:56603702-56603721 | MS.gene049458:CDS | 35.0% | |
| ACCCAATATTAATCGCATAC+CGG | + | chr3.2:56603911-56603930 | None:intergenic | 35.0% | |
| AGTTGGGTACCAATATAGTT+GGG | + | chr3.2:56605193-56605212 | None:intergenic | 35.0% | |
| ATACTTCCATGACATTGCTT+GGG | + | chr3.2:56605001-56605020 | None:intergenic | 35.0% | |
| CCGAACATGAAAAAAGAACA+AGG | - | chr3.2:56605539-56605558 | MS.gene049458:intron | 35.0% | |
| CTAACTCATAAAGATGCCTT+GGG | + | chr3.2:56603877-56603896 | None:intergenic | 35.0% | |
| GACCAATCCTAATGAAGTTA+CGG | - | chr3.2:56605714-56605733 | MS.gene049458:intron | 35.0% | |
| TAACTCATAAAGATGCCTTG+GGG | + | chr3.2:56603876-56603895 | None:intergenic | 35.0% | |
| TGAAAAAAGAACAAGGATGC+TGG | - | chr3.2:56605546-56605565 | MS.gene049458:intron | 35.0% | |
| TTCCGTAACTTCATTAGGAT+TGG | + | chr3.2:56605719-56605738 | None:intergenic | 35.0% | |
| AAAGTGGAACCCGTAAGTTA+CGG | + | chr3.2:56604850-56604869 | None:intergenic | 40.0% | |
| AACACACTTTCTACTCCAGT+TGG | + | chr3.2:56605499-56605518 | None:intergenic | 40.0% | |
| AACGAATTGAGCATCCTTTG+TGG | - | chr3.2:56605412-56605431 | MS.gene049458:intron | 40.0% | |
| ACCCGGTATGCGATTAATAT+TGG | - | chr3.2:56603906-56603925 | MS.gene049458:CDS | 40.0% | |
| AGGCATCTTTATGAGTTAGG+CGG | - | chr3.2:56603878-56603897 | MS.gene049458:CDS | 40.0% | |
| CAATTGAATCCTCTTGAGCT+TGG | + | chr3.2:56605795-56605814 | None:intergenic | 40.0% | |
| CCCAATATTAATCGCATACC+GGG | + | chr3.2:56603910-56603929 | None:intergenic | 40.0% | |
| CCCGGTATGCGATTAATATT+GGG | - | chr3.2:56603907-56603926 | MS.gene049458:CDS | 40.0% | |
| CCTAACTCATAAAGATGCCT+TGG | + | chr3.2:56603878-56603897 | None:intergenic | 40.0% | |
| GAAGGAAGTCTACCAAAAGT+TGG | - | chr3.2:56605756-56605775 | MS.gene049458:intron | 40.0% | |
| GAGTTGGGTACCAATATAGT+TGG | + | chr3.2:56605194-56605213 | None:intergenic | 40.0% | |
| TGAAAAATGGCCCAAGTCAT+TGG | + | chr3.2:56604142-56604161 | None:intergenic | 40.0% | |
| TGAAAACCATCATGAAGCTG+AGG | - | chr3.2:56605462-56605481 | MS.gene049458:intron | 40.0% | |
| ! | AATGGATTTCCAAGCTCAAG+AGG | - | chr3.2:56605783-56605802 | MS.gene049458:intron | 40.0% |
| ! | CCAAGGCATCTTTATGAGTT+AGG | - | chr3.2:56603875-56603894 | MS.gene049458:CDS | 40.0% |
| ! | GAGTAGAAAGTGTGTTGTCA+AGG | - | chr3.2:56605503-56605522 | MS.gene049458:intron | 40.0% |
| !! | CACAAGCATTGATACCACAA+AGG | + | chr3.2:56605429-56605448 | None:intergenic | 40.0% |
| AACAGCCAGGATTGCTTCAA+TGG | - | chr3.2:56604964-56604983 | MS.gene049458:intron | 45.0% | |
| ACACAACTATGGCACCAAAG+TGG | + | chr3.2:56604866-56604885 | None:intergenic | 45.0% | |
| ACCATCATGAAGCTGAGGTT+TGG | - | chr3.2:56605467-56605486 | MS.gene049458:intron | 45.0% | |
| AGAGTGGCTCCCAACTATAT+TGG | - | chr3.2:56605181-56605200 | MS.gene049458:intron | 45.0% | |
| ATCAACACACATCAACAGCC+AGG | - | chr3.2:56604951-56604970 | MS.gene049458:intron | 45.0% | |
| CTTTCTACTCCAGTTGGAGA+AGG | + | chr3.2:56605493-56605512 | None:intergenic | 45.0% | |
| GATTGCTTCAATGGCACCAA+TGG | - | chr3.2:56604973-56604992 | MS.gene049458:intron | 45.0% | |
| GTAACTTACGGGTTCCACTT+TGG | - | chr3.2:56604849-56604868 | MS.gene049458:intron | 45.0% | |
| TAGTCAACAACTCAAAGCGG+AGG | - | chr3.2:56603705-56603724 | MS.gene049458:CDS | 45.0% | |
| TGGCTGTTGATGTGTGTTGA+TGG | + | chr3.2:56604952-56604971 | None:intergenic | 45.0% | |
| TTGGCTGTCACCAATGACTT+GGG | - | chr3.2:56604129-56604148 | MS.gene049458:intron | 45.0% | |
| TTTGGCTGTCACCAATGACT+TGG | - | chr3.2:56604128-56604147 | MS.gene049458:intron | 45.0% | |
| ! | GGCTGTTGATGTGTGTTGAT+GGG | + | chr3.2:56604951-56604970 | None:intergenic | 45.0% |
| ! | TGATGTGTGTTGATGGGTGT+GGG | + | chr3.2:56604945-56604964 | None:intergenic | 45.0% |
| ! | TTGATGTGTGTTGATGGGTG+TGG | + | chr3.2:56604946-56604965 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAATTCTTA+TGG | - | chr3.2:56605310-56605329 | MS.gene049458:intron | 5.0% |
| !!! | AAAAAGTATTTAAAAAATTA+GGG | - | chr3.2:56604022-56604041 | MS.gene049458:CDS | 5.0% |
| !!! | ATATTTTATAATAAACAATT+AGG | + | chr3.2:56605038-56605057 | None:intergenic | 5.0% |
| !!! | TAAAAAGTATTTAAAAAATT+AGG | - | chr3.2:56604021-56604040 | MS.gene049458:CDS | 5.0% |
| !!! | TATTTTATAATAAACAATTA+GGG | + | chr3.2:56605037-56605056 | None:intergenic | 5.0% |
| ATGGCACCCAAGCAATGTCA+TGG | - | chr3.2:56604992-56605011 | MS.gene049458:intron | 50.0% | |
| GCACCAATGGCACACAACTA+TGG | + | chr3.2:56604877-56604896 | None:intergenic | 50.0% | |
| GCCAAACCTCAGCTTCATGA+TGG | + | chr3.2:56605471-56605490 | None:intergenic | 50.0% | |
| GTGCCATAGTTGTGTGCCAT+TGG | - | chr3.2:56604871-56604890 | MS.gene049458:intron | 50.0% | |
| GTGTGTGATGTGTGTGTGTG+TGG | + | chr3.2:56604917-56604936 | None:intergenic | 50.0% | |
| TGTGATGTGTGTGTGTGTGG+TGG | + | chr3.2:56604914-56604933 | None:intergenic | 50.0% | |
| ! | GATGTGTGTTGATGGGTGTG+GGG | + | chr3.2:56604944-56604963 | None:intergenic | 50.0% |
| ! | TGACATTGCTTGGGTGCCAT+TGG | + | chr3.2:56604992-56605011 | None:intergenic | 50.0% |
| ! | TTGGTGGCTGCCGTAACTTA+CGG | - | chr3.2:56604837-56604856 | MS.gene049458:intron | 50.0% |
| !! | TGGTGCCATTGAAGCAATCC+TGG | + | chr3.2:56604972-56604991 | None:intergenic | 50.0% |
| !! | TTGTGTGCCATTGGTGCCAT+TGG | - | chr3.2:56604880-56604899 | MS.gene049458:intron | 50.0% |
| GATGGCACCAATGGCACCAA+TGG | + | chr3.2:56604890-56604909 | None:intergenic | 55.0% | |
| TGAGTTAGGCGGTTGAGACC+CGG | - | chr3.2:56603889-56603908 | MS.gene049458:CDS | 55.0% | |
| TGGTGGCTGCCGTAACTTAC+GGG | - | chr3.2:56604838-56604857 | MS.gene049458:intron | 55.0% | |
| ! | GAGGTTTGGCCTTCTCCAAC+TGG | - | chr3.2:56605481-56605500 | MS.gene049458:intron | 55.0% |
| ! | GTGTGTGTGTGTGGTGGAGA+TGG | + | chr3.2:56604908-56604927 | None:intergenic | 55.0% |
| ! | TGTGGTGGAGATGGCACCAA+TGG | + | chr3.2:56604899-56604918 | None:intergenic | 55.0% |
| GACAATCGGTGTGTGCCCCA+AGG | - | chr3.2:56603858-56603877 | MS.gene049458:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 56603674 | 56605867 | 56603674 | ID=MS.gene049458 |
| chr3.2 | mRNA | 56603674 | 56605867 | 56603674 | ID=MS.gene049458.t1;Parent=MS.gene049458 |
| chr3.2 | exon | 56605789 | 56605867 | 56605789 | ID=MS.gene049458.t1.exon1;Parent=MS.gene049458.t1 |
| chr3.2 | CDS | 56605789 | 56605867 | 56605789 | ID=cds.MS.gene049458.t1;Parent=MS.gene049458.t1 |
| chr3.2 | exon | 56603674 | 56604146 | 56603674 | ID=MS.gene049458.t1.exon2;Parent=MS.gene049458.t1 |
| chr3.2 | CDS | 56603674 | 56604146 | 56603674 | ID=cds.MS.gene049458.t1;Parent=MS.gene049458.t1 |
| Gene Sequence |
| Protein sequence |
