Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049461.t1 | XP_003616662.1 | 90.3 | 62 | 6 | 0 | 27 | 88 | 16 | 77 | 3.10E-24 | 121.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049461.t1 | Q9SN12 | 53.8 | 78 | 32 | 1 | 27 | 104 | 3 | 76 | 3.7e-18 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049461.t1 | G7K260 | 90.3 | 62 | 6 | 0 | 27 | 88 | 16 | 77 | 2.2e-24 | 121.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049461.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049461.t1 | MTR_5g082910 | 89.041 | 73 | 8 | 0 | 16 | 88 | 5 | 77 | 2.37e-41 | 138 |
| MS.gene049461.t1 | MTR_5g016510 | 65.574 | 61 | 21 | 0 | 27 | 87 | 2 | 62 | 1.72e-23 | 92.8 |
| MS.gene049461.t1 | MTR_3g101290 | 52.564 | 78 | 33 | 1 | 27 | 104 | 34 | 107 | 1.02e-22 | 89.0 |
| MS.gene049461.t1 | MTR_4g094982 | 63.934 | 61 | 22 | 0 | 27 | 87 | 2 | 62 | 1.36e-22 | 89.4 |
| MS.gene049461.t1 | MTR_6g015455 | 62.295 | 61 | 23 | 0 | 27 | 87 | 2 | 62 | 3.90e-20 | 85.1 |
| MS.gene049461.t1 | MTR_4g019370 | 61.017 | 59 | 23 | 0 | 28 | 86 | 36 | 94 | 5.30e-19 | 80.9 |
| MS.gene049461.t1 | MTR_6g027340 | 39.130 | 69 | 42 | 0 | 18 | 86 | 4 | 72 | 1.88e-13 | 64.3 |
| MS.gene049461.t1 | MTR_5g010650 | 46.774 | 62 | 33 | 0 | 25 | 86 | 105 | 166 | 4.62e-13 | 64.7 |
| MS.gene049461.t1 | MTR_3g089045 | 49.123 | 57 | 29 | 0 | 30 | 86 | 16 | 72 | 9.04e-13 | 63.5 |
| MS.gene049461.t1 | MTR_6g027360 | 39.130 | 69 | 42 | 0 | 18 | 86 | 66 | 134 | 9.65e-13 | 63.5 |
| MS.gene049461.t1 | MTR_6g027370 | 48.276 | 58 | 30 | 0 | 29 | 86 | 98 | 155 | 1.33e-12 | 63.2 |
| MS.gene049461.t1 | MTR_3g110028 | 48.214 | 56 | 29 | 0 | 25 | 80 | 80 | 135 | 2.80e-12 | 62.4 |
| MS.gene049461.t1 | MTR_6g074860 | 47.368 | 57 | 30 | 0 | 30 | 86 | 4 | 60 | 6.44e-12 | 60.5 |
| MS.gene049461.t1 | MTR_5g488170 | 49.180 | 61 | 30 | 1 | 27 | 86 | 11 | 71 | 1.90e-11 | 59.3 |
| MS.gene049461.t1 | MTR_5g088080 | 49.180 | 61 | 30 | 1 | 27 | 86 | 11 | 71 | 2.05e-11 | 59.3 |
| MS.gene049461.t1 | MTR_5g088150 | 49.180 | 61 | 30 | 1 | 27 | 86 | 11 | 71 | 2.05e-11 | 59.3 |
| MS.gene049461.t1 | MTR_5g488210 | 49.180 | 61 | 30 | 1 | 27 | 86 | 11 | 71 | 2.05e-11 | 59.3 |
| MS.gene049461.t1 | MTR_5g088640 | 49.180 | 61 | 30 | 1 | 27 | 86 | 11 | 71 | 2.06e-11 | 59.7 |
| MS.gene049461.t1 | MTR_1g026870 | 44.643 | 56 | 31 | 0 | 25 | 80 | 80 | 135 | 2.61e-11 | 59.7 |
| MS.gene049461.t1 | MTR_5g041570 | 40.000 | 75 | 41 | 1 | 16 | 86 | 116 | 190 | 2.62e-11 | 59.7 |
| MS.gene049461.t1 | MTR_5g062790 | 49.180 | 61 | 30 | 1 | 27 | 86 | 8 | 68 | 3.04e-11 | 59.3 |
| MS.gene049461.t1 | MTR_3g077650 | 47.170 | 53 | 28 | 0 | 29 | 81 | 180 | 232 | 5.13e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049461.t1 | AT3G50060 | 53.165 | 79 | 33 | 1 | 26 | 104 | 2 | 76 | 2.95e-23 | 92.0 |
| MS.gene049461.t1 | AT5G67300 | 63.333 | 60 | 22 | 0 | 27 | 86 | 3 | 62 | 1.73e-21 | 87.0 |
| MS.gene049461.t1 | AT2G23290 | 52.564 | 78 | 33 | 1 | 27 | 104 | 10 | 83 | 6.24e-21 | 85.9 |
| MS.gene049461.t1 | AT4G37260 | 57.143 | 63 | 27 | 0 | 24 | 86 | 7 | 69 | 4.16e-20 | 83.6 |
| MS.gene049461.t1 | AT2G39880 | 52.703 | 74 | 31 | 1 | 13 | 86 | 37 | 106 | 5.77e-20 | 84.0 |
| MS.gene049461.t1 | AT3G55730 | 59.322 | 59 | 24 | 0 | 28 | 86 | 54 | 112 | 5.00e-19 | 81.3 |
| MS.gene049461.t1 | AT3G09230 | 57.353 | 68 | 29 | 0 | 19 | 86 | 44 | 111 | 1.46e-18 | 80.1 |
| MS.gene049461.t1 | AT1G73410 | 49.123 | 57 | 29 | 0 | 30 | 86 | 6 | 62 | 6.28e-13 | 62.8 |
| MS.gene049461.t1 | AT1G73410 | 49.123 | 57 | 29 | 0 | 30 | 86 | 6 | 62 | 6.68e-13 | 63.2 |
| MS.gene049461.t1 | AT1G17950 | 47.368 | 57 | 30 | 0 | 30 | 86 | 5 | 61 | 5.73e-12 | 60.8 |
| MS.gene049461.t1 | AT4G33450 | 45.614 | 57 | 31 | 0 | 30 | 86 | 19 | 75 | 6.40e-12 | 60.8 |
| MS.gene049461.t1 | AT5G11050 | 45.283 | 53 | 29 | 0 | 29 | 81 | 104 | 156 | 1.24e-11 | 60.5 |
| MS.gene049461.t1 | AT4G32730 | 48.214 | 56 | 29 | 0 | 25 | 80 | 82 | 137 | 1.45e-11 | 60.5 |
| MS.gene049461.t1 | AT4G32730 | 48.214 | 56 | 29 | 0 | 25 | 80 | 82 | 137 | 1.45e-11 | 60.5 |
| MS.gene049461.t1 | AT4G32730 | 48.214 | 56 | 29 | 0 | 25 | 80 | 82 | 137 | 1.45e-11 | 60.5 |
| MS.gene049461.t1 | AT4G32730 | 48.214 | 56 | 29 | 0 | 25 | 80 | 82 | 137 | 1.45e-11 | 60.5 |
| MS.gene049461.t1 | AT4G32730 | 48.214 | 56 | 29 | 0 | 25 | 80 | 82 | 137 | 1.62e-11 | 60.5 |
| MS.gene049461.t1 | AT3G09370 | 44.643 | 56 | 31 | 0 | 25 | 80 | 138 | 193 | 1.66e-11 | 60.5 |
| MS.gene049461.t1 | AT3G09370 | 44.643 | 56 | 31 | 0 | 25 | 80 | 125 | 180 | 1.71e-11 | 60.1 |
| MS.gene049461.t1 | AT3G09370 | 44.643 | 56 | 31 | 0 | 25 | 80 | 130 | 185 | 1.73e-11 | 60.1 |
| MS.gene049461.t1 | AT5G11510 | 44.643 | 56 | 31 | 0 | 25 | 80 | 76 | 131 | 2.01e-11 | 60.1 |
| MS.gene049461.t1 | AT5G11510 | 44.643 | 56 | 31 | 0 | 25 | 80 | 76 | 131 | 2.01e-11 | 60.1 |
| MS.gene049461.t1 | AT5G11510 | 44.643 | 56 | 31 | 0 | 25 | 80 | 76 | 131 | 2.01e-11 | 60.1 |
| MS.gene049461.t1 | AT5G17800 | 47.368 | 57 | 30 | 0 | 30 | 86 | 93 | 149 | 2.17e-11 | 59.7 |
| MS.gene049461.t1 | AT5G02320 | 45.614 | 57 | 31 | 0 | 25 | 81 | 122 | 178 | 2.19e-11 | 60.1 |
| MS.gene049461.t1 | AT5G02320 | 45.614 | 57 | 31 | 0 | 25 | 81 | 122 | 178 | 2.19e-11 | 60.1 |
| MS.gene049461.t1 | AT5G02320 | 43.548 | 62 | 35 | 0 | 25 | 86 | 62 | 123 | 2.32e-11 | 59.7 |
| MS.gene049461.t1 | AT5G11510 | 44.643 | 56 | 31 | 0 | 25 | 80 | 76 | 131 | 2.35e-11 | 60.1 |
| MS.gene049461.t1 | AT5G11510 | 44.643 | 56 | 31 | 0 | 25 | 80 | 76 | 131 | 2.51e-11 | 59.7 |
| MS.gene049461.t1 | AT5G58850 | 41.509 | 53 | 31 | 0 | 29 | 81 | 104 | 156 | 3.87e-11 | 59.3 |
Find 28 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAAATTTCCATATGTTT+TGG | 0.296719 | 3.2:+56618872 | MS.gene049461:intron |
| GCCACCACCGCCGGTGTAAA+AGG | 0.337215 | 3.2:-56618409 | None:intergenic |
| AACGGAATCCCCGATCGTTC+TGG | 0.385664 | 3.2:+56618331 | MS.gene049461:CDS |
| AGGAAAACGGTGCAAGAAAC+TGG | 0.414736 | 3.2:+56618296 | MS.gene049461:CDS |
| TCAAAAGGAACCAAAACATA+TGG | 0.425019 | 3.2:-56618882 | None:intergenic |
| ACCACCGTTTGAATTCGAAT+TGG | 0.426843 | 3.2:-56618197 | None:intergenic |
| AGATGAAACATTGGTGAAAC+TGG | 0.432466 | 3.2:+56618270 | MS.gene049461:CDS |
| ACGGAATCCCCGATCGTTCT+GGG | 0.435316 | 3.2:+56618332 | MS.gene049461:CDS |
| TCGAATTCAAACGGTGGTGG+TGG | 0.444499 | 3.2:+56618202 | MS.gene049461:CDS |
| GTGATGAAGTGAAGAGTTCA+TGG | 0.455401 | 3.2:+56618236 | MS.gene049461:CDS |
| CAAAACTTCCCAGAACGATC+GGG | 0.482750 | 3.2:-56618340 | None:intergenic |
| ATGGCCAAGGGACGATCAAA+AGG | 0.494112 | 3.2:-56618897 | None:intergenic |
| CGAATTCAAACGGTGGTGGT+GGG | 0.506583 | 3.2:+56618203 | MS.gene049461:CDS |
| GCAAAACTTCCCAGAACGAT+CGG | 0.556052 | 3.2:-56618341 | None:intergenic |
| AGTACCAATTCGAATTCAAA+CGG | 0.564007 | 3.2:+56618193 | MS.gene049461:CDS |
| GAATTCAAACGGTGGTGGTG+GGG | 0.567365 | 3.2:+56618204 | MS.gene049461:CDS |
| AAAGGAAGGTGTTGAACGGT+TGG | 0.567448 | 3.2:-56618391 | None:intergenic |
| GGTGGTGGTGGGGATGAAAA+CGG | 0.571134 | 3.2:+56618214 | MS.gene049461:CDS |
| CCACCGCCGGTGTAAAAGGA+AGG | 0.581661 | 3.2:-56618405 | None:intergenic |
| GATTGTTGTGCCACCACCGC+CGG | 0.590963 | 3.2:-56618418 | None:intergenic |
| AACTGGTCTGTGATAAGCAA+CGG | 0.591578 | 3.2:+56618313 | MS.gene049461:CDS |
| GTGAAACTGGTGAAGGAAAA+CGG | 0.592557 | 3.2:+56618283 | MS.gene049461:CDS |
| GCTGATTACACCACCGCAGA+CGG | 0.606009 | 3.2:-56618363 | None:intergenic |
| AATTCGAATTCAAACGGTGG+TGG | 0.622740 | 3.2:+56618199 | MS.gene049461:CDS |
| TGTAAAAGGAAGGTGTTGAA+CGG | 0.650810 | 3.2:-56618395 | None:intergenic |
| AACATTGGTGAAACTGGTGA+AGG | 0.661429 | 3.2:+56618276 | MS.gene049461:CDS |
| AAAACTTCCCAGAACGATCG+GGG | 0.663763 | 3.2:-56618339 | None:intergenic |
| ACCAATTCGAATTCAAACGG+TGG | 0.728179 | 3.2:+56618196 | MS.gene049461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTGTTAAAATGT+AGG | + | chr3.2:56618851-56618870 | MS.gene049461:intron | 15.0% |
| !! | ATATATGTGTAAAGTGTAAT+TGG | + | chr3.2:56618792-56618811 | MS.gene049461:intron | 20.0% |
| ! | TAAAAACGAAGATGAAACAT+TGG | + | chr3.2:56618261-56618280 | MS.gene049461:CDS | 25.0% |
| !! | GGTAAAATTTCCATATGTTT+TGG | + | chr3.2:56618872-56618891 | MS.gene049461:intron | 25.0% |
| !!! | ATTCTTCGATTTTTTGGAAT+GGG | + | chr3.2:56618473-56618492 | MS.gene049461:intron | 25.0% |
| ACGAGATTCAATCCTAAAAA+TGG | - | chr3.2:56618919-56618938 | None:intergenic | 30.0% | |
| AGTACCAATTCGAATTCAAA+CGG | + | chr3.2:56618193-56618212 | MS.gene049461:CDS | 30.0% | |
| CAAAAATCAGCAATGTTGTA+AGG | - | chr3.2:56618630-56618649 | None:intergenic | 30.0% | |
| TCAAAAGGAACCAAAACATA+TGG | - | chr3.2:56618885-56618904 | None:intergenic | 30.0% | |
| TCCAAAAAATCGAAGAATCT+TGG | - | chr3.2:56618471-56618490 | None:intergenic | 30.0% | |
| !! | TGATAGCTTTGTTAAAGTCT+TGG | + | chr3.2:56618738-56618757 | MS.gene049461:intron | 30.0% |
| !!! | ACCAAGATTCTTCGATTTTT+TGG | + | chr3.2:56618467-56618486 | MS.gene049461:intron | 30.0% |
| !!! | GATTCTTCGATTTTTTGGAA+TGG | + | chr3.2:56618472-56618491 | MS.gene049461:intron | 30.0% |
| AAGCTTTACCAAGCAATTTG+AGG | - | chr3.2:56618693-56618712 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAGAAGA+AGG | + | chr3.2:56618580-56618599 | MS.gene049461:intron | 35.0% | |
| AGATGAAACATTGGTGAAAC+TGG | + | chr3.2:56618270-56618289 | MS.gene049461:CDS | 35.0% | |
| GTCTGATTCAGAGTGAAATT+CGG | + | chr3.2:56618497-56618516 | MS.gene049461:intron | 35.0% | |
| TCAATCCTAAAAATGGCCAA+GGG | - | chr3.2:56618912-56618931 | None:intergenic | 35.0% | |
| TCTGATTCAGAGTGAAATTC+GGG | + | chr3.2:56618498-56618517 | MS.gene049461:intron | 35.0% | |
| TTCAATCCTAAAAATGGCCA+AGG | - | chr3.2:56618913-56618932 | None:intergenic | 35.0% | |
| TTCTTCTTCTTTCCTTCTTC+TGG | - | chr3.2:56618570-56618589 | None:intergenic | 35.0% | |
| TTTACGTGTTAGAATCGCTT+AGG | + | chr3.2:56618766-56618785 | MS.gene049461:intron | 35.0% | |
| !! | TGTAAAAGGAAGGTGTTGAA+CGG | - | chr3.2:56618398-56618417 | None:intergenic | 35.0% |
| AACATTGGTGAAACTGGTGA+AGG | + | chr3.2:56618276-56618295 | MS.gene049461:CDS | 40.0% | |
| AATTCGAATTCAAACGGTGG+TGG | + | chr3.2:56618199-56618218 | MS.gene049461:CDS | 40.0% | |
| ACCAATTCGAATTCAAACGG+TGG | + | chr3.2:56618196-56618215 | MS.gene049461:CDS | 40.0% | |
| ACCACCGTTTGAATTCGAAT+TGG | - | chr3.2:56618200-56618219 | None:intergenic | 40.0% | |
| ATCAGCAATGTTGTAAGGCA+AGG | - | chr3.2:56618625-56618644 | None:intergenic | 40.0% | |
| GGAAGAAGAAGAAGAAGTGA+CGG | + | chr3.2:56618519-56618538 | MS.gene049461:intron | 40.0% | |
| GTGAAACTGGTGAAGGAAAA+CGG | + | chr3.2:56618283-56618302 | MS.gene049461:CDS | 40.0% | |
| GTGATGAAGTGAAGAGTTCA+TGG | + | chr3.2:56618236-56618255 | MS.gene049461:CDS | 40.0% | |
| ! | AACTGGTCTGTGATAAGCAA+CGG | + | chr3.2:56618313-56618332 | MS.gene049461:CDS | 40.0% |
| ! | ACCAAGCAATTTGAGGCAAA+CGG | - | chr3.2:56618686-56618705 | None:intergenic | 40.0% |
| ! | TCAACACCTTCCTTTTACAC+CGG | + | chr3.2:56618399-56618418 | MS.gene049461:CDS | 40.0% |
| !! | TCTTTCCTTCTTCTGGTTTG+CGG | - | chr3.2:56618563-56618582 | None:intergenic | 40.0% |
| AAAACTTCCCAGAACGATCG+GGG | - | chr3.2:56618342-56618361 | None:intergenic | 45.0% | |
| AAACCTACTTGGCAAGAAGG+AGG | - | chr3.2:56618663-56618682 | None:intergenic | 45.0% | |
| AACCTACTTGGCAAGAAGGA+GGG | - | chr3.2:56618662-56618681 | None:intergenic | 45.0% | |
| AGAAGAAGAAGAAGTGACGG+TGG | + | chr3.2:56618522-56618541 | MS.gene049461:intron | 45.0% | |
| AGGAAAACGGTGCAAGAAAC+TGG | + | chr3.2:56618296-56618315 | MS.gene049461:CDS | 45.0% | |
| CAAAACTTCCCAGAACGATC+GGG | - | chr3.2:56618343-56618362 | None:intergenic | 45.0% | |
| GCAAAACTTCCCAGAACGAT+CGG | - | chr3.2:56618344-56618363 | None:intergenic | 45.0% | |
| TCCGTTTGCCTCAAATTGCT+TGG | + | chr3.2:56618682-56618701 | MS.gene049461:intron | 45.0% | |
| !! | AAAGGAAGGTGTTGAACGGT+TGG | - | chr3.2:56618394-56618413 | None:intergenic | 45.0% |
| !!! | ATCGTCCCTTGGCCATTTTT+AGG | + | chr3.2:56618904-56618923 | MS.gene049461:CDS | 45.0% |
| AATGTTGTAAGGCAAGGCCC+AGG | - | chr3.2:56618619-56618638 | None:intergenic | 50.0% | |
| AGAAGAAGAAGTGACGGTGG+AGG | + | chr3.2:56618525-56618544 | MS.gene049461:intron | 50.0% | |
| ATGGCCAAGGGACGATCAAA+AGG | - | chr3.2:56618900-56618919 | None:intergenic | 50.0% | |
| CGGAAACCTACTTGGCAAGA+AGG | - | chr3.2:56618666-56618685 | None:intergenic | 50.0% | |
| GAAGAAGAAGTGACGGTGGA+GGG | + | chr3.2:56618526-56618545 | MS.gene049461:intron | 50.0% | |
| GAGGCAAACGGAAACCTACT+TGG | - | chr3.2:56618674-56618693 | None:intergenic | 50.0% | |
| ! | ACACCTTCCTTTTACACCGG+CGG | + | chr3.2:56618402-56618421 | MS.gene049461:CDS | 50.0% |
| ! | CGAATTCAAACGGTGGTGGT+GGG | + | chr3.2:56618203-56618222 | MS.gene049461:CDS | 50.0% |
| ! | GAATTCAAACGGTGGTGGTG+GGG | + | chr3.2:56618204-56618223 | MS.gene049461:CDS | 50.0% |
| ! | GGTTCCTTTTGATCGTCCCT+TGG | + | chr3.2:56618893-56618912 | MS.gene049461:CDS | 50.0% |
| ! | TCGAATTCAAACGGTGGTGG+TGG | + | chr3.2:56618202-56618221 | MS.gene049461:CDS | 50.0% |
| !! | AGAGAAGAAGGAGTGCTACG+TGG | + | chr3.2:56618592-56618611 | MS.gene049461:intron | 50.0% |
| !! | GAGAAGAAGGAGTGCTACGT+GGG | + | chr3.2:56618593-56618612 | MS.gene049461:intron | 50.0% |
| AACGGAATCCCCGATCGTTC+TGG | + | chr3.2:56618331-56618350 | MS.gene049461:CDS | 55.0% | |
| AAGTGACGGTGGAGGGAGAA+AGG | + | chr3.2:56618533-56618552 | MS.gene049461:intron | 55.0% | |
| ACGGAATCCCCGATCGTTCT+GGG | + | chr3.2:56618332-56618351 | MS.gene049461:CDS | 55.0% | |
| CACCCTCCTTCTTGCCAAGT+AGG | + | chr3.2:56618657-56618676 | MS.gene049461:intron | 55.0% | |
| GACTGCCGCAAACCAGAAGA+AGG | + | chr3.2:56618555-56618574 | MS.gene049461:intron | 55.0% | |
| GCTGATTACACCACCGCAGA+CGG | - | chr3.2:56618366-56618385 | None:intergenic | 55.0% | |
| ! | CTGGGAAGTTTTGCCGTCTG+CGG | + | chr3.2:56618350-56618369 | MS.gene049461:CDS | 55.0% |
| !! | GGTGGTGGTGGGGATGAAAA+CGG | + | chr3.2:56618214-56618233 | MS.gene049461:CDS | 55.0% |
| CCACCGCCGGTGTAAAAGGA+AGG | - | chr3.2:56618408-56618427 | None:intergenic | 60.0% | |
| GATTGTTGTGCCACCACCGC+CGG | - | chr3.2:56618421-56618440 | None:intergenic | 60.0% | |
| ! | CCTTCCTTTTACACCGGCGG+TGG | + | chr3.2:56618405-56618424 | MS.gene049461:CDS | 60.0% |
| ! | CTTGGCAAGAAGGAGGGTGC+AGG | - | chr3.2:56618656-56618675 | None:intergenic | 60.0% |
| ! | GGAAGTTTTGCCGTCTGCGG+TGG | + | chr3.2:56618353-56618372 | MS.gene049461:CDS | 60.0% |
| ! | TCCTTTTACACCGGCGGTGG+TGG | + | chr3.2:56618408-56618427 | MS.gene049461:CDS | 60.0% |
| !! | AAGGAGTGCTACGTGGGCCT+GGG | + | chr3.2:56618599-56618618 | MS.gene049461:intron | 60.0% |
| GCCACCACCGCCGGTGTAAA+AGG | - | chr3.2:56618412-56618431 | None:intergenic | 65.0% | |
| !! | GAAGGAGTGCTACGTGGGCC+TGG | + | chr3.2:56618598-56618617 | MS.gene049461:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 56618160 | 56618944 | 56618160 | ID=MS.gene049461 |
| chr3.2 | mRNA | 56618160 | 56618944 | 56618160 | ID=MS.gene049461.t1;Parent=MS.gene049461 |
| chr3.2 | exon | 56618160 | 56618462 | 56618160 | ID=MS.gene049461.t1.exon1;Parent=MS.gene049461.t1 |
| chr3.2 | CDS | 56618160 | 56618462 | 56618160 | ID=cds.MS.gene049461.t1;Parent=MS.gene049461.t1 |
| chr3.2 | exon | 56618873 | 56618944 | 56618873 | ID=MS.gene049461.t1.exon2;Parent=MS.gene049461.t1 |
| chr3.2 | CDS | 56618873 | 56618944 | 56618873 | ID=cds.MS.gene049461.t1;Parent=MS.gene049461.t1 |
| Gene Sequence |
| Protein sequence |
