Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049693.t1 | AES70883.2 | 94.6 | 349 | 19 | 0 | 5 | 353 | 5 | 353 | 6.70E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049693.t1 | F4KGY6 | 46.3 | 296 | 116 | 5 | 16 | 296 | 4 | 271 | 1.7e-52 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049693.t1 | G7J7Y9 | 94.6 | 349 | 19 | 0 | 5 | 353 | 5 | 353 | 4.8e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049693.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049693.t1 | MTR_3g064500 | 93.768 | 353 | 22 | 0 | 1 | 353 | 1 | 353 | 0.0 | 653 |
| MS.gene049693.t1 | MTR_5g076960 | 60.839 | 286 | 104 | 3 | 19 | 297 | 4 | 288 | 3.54e-99 | 300 |
| MS.gene049693.t1 | MTR_6g477860 | 48.649 | 259 | 116 | 6 | 23 | 269 | 23 | 276 | 1.11e-51 | 178 |
| MS.gene049693.t1 | MTR_5g076960 | 52.604 | 192 | 84 | 2 | 118 | 303 | 3 | 193 | 4.26e-40 | 144 |
| MS.gene049693.t1 | MTR_1g067000 | 58.163 | 98 | 33 | 1 | 46 | 143 | 36 | 125 | 9.77e-35 | 129 |
| MS.gene049693.t1 | MTR_7g118330 | 68.687 | 99 | 29 | 1 | 42 | 138 | 11 | 109 | 1.01e-31 | 126 |
| MS.gene049693.t1 | MTR_8g028655 | 59.140 | 93 | 30 | 1 | 46 | 138 | 53 | 137 | 1.51e-31 | 121 |
| MS.gene049693.t1 | MTR_0123s0070 | 53.922 | 102 | 39 | 1 | 37 | 138 | 30 | 123 | 1.04e-30 | 118 |
| MS.gene049693.t1 | MTR_0123s0070 | 53.922 | 102 | 39 | 1 | 37 | 138 | 30 | 123 | 1.70e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049693.t1 | AT5G17300 | 49.315 | 292 | 105 | 7 | 16 | 292 | 4 | 267 | 3.40e-59 | 196 |
| MS.gene049693.t1 | AT5G37260 | 41.298 | 339 | 96 | 10 | 34 | 343 | 12 | 276 | 7.55e-54 | 179 |
| MS.gene049693.t1 | AT1G18330 | 37.037 | 324 | 152 | 12 | 44 | 346 | 37 | 329 | 2.73e-37 | 137 |
| MS.gene049693.t1 | AT1G18330 | 37.037 | 324 | 152 | 12 | 44 | 346 | 63 | 355 | 9.66e-37 | 136 |
| MS.gene049693.t1 | AT3G10113 | 46.995 | 183 | 78 | 3 | 44 | 219 | 52 | 222 | 6.49e-36 | 133 |
| MS.gene049693.t1 | AT3G09600 | 59.140 | 93 | 30 | 1 | 46 | 138 | 32 | 116 | 1.65e-32 | 123 |
| MS.gene049693.t1 | AT3G09600 | 59.140 | 93 | 30 | 1 | 46 | 138 | 32 | 116 | 1.65e-32 | 123 |
| MS.gene049693.t1 | AT3G09600 | 59.140 | 93 | 30 | 1 | 46 | 138 | 32 | 116 | 2.01e-32 | 122 |
| MS.gene049693.t1 | AT3G09600 | 59.140 | 93 | 30 | 1 | 46 | 138 | 32 | 116 | 2.04e-32 | 122 |
| MS.gene049693.t1 | AT3G09600 | 59.140 | 93 | 30 | 1 | 46 | 138 | 32 | 116 | 2.04e-32 | 122 |
| MS.gene049693.t1 | AT1G01520 | 42.373 | 177 | 80 | 6 | 21 | 196 | 26 | 181 | 2.10e-31 | 119 |
| MS.gene049693.t1 | AT1G01520 | 42.373 | 177 | 80 | 6 | 21 | 196 | 26 | 181 | 2.10e-31 | 119 |
| MS.gene049693.t1 | AT1G01520 | 42.373 | 177 | 80 | 6 | 21 | 196 | 26 | 181 | 2.68e-31 | 120 |
| MS.gene049693.t1 | AT1G01060 | 54.483 | 145 | 59 | 3 | 46 | 183 | 13 | 157 | 2.95e-31 | 124 |
| MS.gene049693.t1 | AT1G01060 | 54.483 | 145 | 59 | 3 | 46 | 183 | 13 | 157 | 3.17e-31 | 124 |
| MS.gene049693.t1 | AT1G01060 | 54.483 | 145 | 59 | 3 | 46 | 183 | 13 | 157 | 3.17e-31 | 124 |
| MS.gene049693.t1 | AT1G01060 | 54.483 | 145 | 59 | 3 | 46 | 183 | 13 | 157 | 3.17e-31 | 124 |
| MS.gene049693.t1 | AT1G01060 | 54.483 | 145 | 59 | 3 | 46 | 183 | 13 | 157 | 3.17e-31 | 124 |
| MS.gene049693.t1 | AT1G01060 | 54.483 | 145 | 59 | 3 | 46 | 183 | 13 | 157 | 3.17e-31 | 124 |
| MS.gene049693.t1 | AT1G01520 | 42.373 | 177 | 80 | 6 | 21 | 196 | 26 | 181 | 3.61e-31 | 119 |
| MS.gene049693.t1 | AT2G46830 | 49.751 | 201 | 76 | 10 | 38 | 223 | 5 | 195 | 4.83e-31 | 124 |
| MS.gene049693.t1 | AT4G01280 | 52.066 | 121 | 48 | 2 | 24 | 144 | 28 | 138 | 7.54e-31 | 119 |
| MS.gene049693.t1 | AT4G01280 | 52.066 | 121 | 48 | 2 | 24 | 144 | 28 | 138 | 7.69e-31 | 119 |
| MS.gene049693.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 46 | 138 | 37 | 121 | 1.84e-30 | 117 |
| MS.gene049693.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 46 | 138 | 37 | 121 | 2.03e-30 | 117 |
| MS.gene049693.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 46 | 138 | 37 | 121 | 2.03e-30 | 117 |
| MS.gene049693.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 46 | 138 | 37 | 121 | 2.23e-30 | 117 |
| MS.gene049693.t1 | AT5G52660 | 52.830 | 106 | 42 | 1 | 38 | 143 | 53 | 150 | 2.50e-30 | 118 |
| MS.gene049693.t1 | AT5G52660 | 52.830 | 106 | 42 | 1 | 38 | 143 | 53 | 150 | 2.75e-30 | 118 |
| MS.gene049693.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 46 | 138 | 37 | 121 | 3.22e-30 | 117 |
| MS.gene049693.t1 | AT5G17300 | 44.907 | 216 | 86 | 6 | 82 | 292 | 5 | 192 | 1.83e-24 | 102 |
| MS.gene049693.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 75 | 138 | 5 | 60 | 1.27e-15 | 75.9 |
| MS.gene049693.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 75 | 138 | 5 | 60 | 1.27e-15 | 75.9 |
| MS.gene049693.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 75 | 138 | 5 | 60 | 1.44e-15 | 75.5 |
| MS.gene049693.t1 | AT3G09600 | 51.562 | 64 | 23 | 1 | 75 | 138 | 5 | 60 | 1.44e-15 | 75.5 |
Find 65 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCGGCCATACAGCTTTA+AGG | 0.174526 | 3.3:-58194874 | None:intergenic |
| TAGAAAGGGAGAAGGAAAAT+TGG | 0.257645 | 3.3:+58195940 | MS.gene049693:CDS |
| CACGAATGATTATGCTCTTA+AGG | 0.280568 | 3.3:+58194673 | MS.gene049693:CDS |
| CTCTGTTTCGATATAGTATA+TGG | 0.282091 | 3.3:-58194810 | None:intergenic |
| AGAAATTTCAATCCCGAAAA+AGG | 0.302937 | 3.3:+58195400 | MS.gene049693:CDS |
| GCCTCAATTGTTGGAAAAGA+TGG | 0.309622 | 3.3:-58195887 | None:intergenic |
| GAAGGAAAATTGGAACTTCT+TGG | 0.319527 | 3.3:+58195950 | MS.gene049693:CDS |
| TGATTCCATATCAGGTTCTT+CGG | 0.333501 | 3.3:+58195261 | MS.gene049693:intron |
| AGGAATTTCAATTGATTCCT+TGG | 0.346980 | 3.3:-58195309 | None:intergenic |
| AAGTGTAGATAAAACTGATT+TGG | 0.347735 | 3.3:-58195477 | None:intergenic |
| TCTGAGCATGACTTCGAATC+TGG | 0.349813 | 3.3:-58195057 | None:intergenic |
| ATAAAACTGATTTGGGAGAT+TGG | 0.361687 | 3.3:-58195469 | None:intergenic |
| AAGGGTTTGTGCCATATAAA+AGG | 0.376865 | 3.3:+58196044 | MS.gene049693:CDS |
| CTGAGTTGAATATGAGTAAC+AGG | 0.381118 | 3.3:-58194635 | None:intergenic |
| GATTCCATATCAGGTTCTTC+GGG | 0.386401 | 3.3:+58195262 | MS.gene049693:intron |
| TCAACTAGCTTGCGAGGATA+AGG | 0.387638 | 3.3:-58195362 | None:intergenic |
| AAATGTATGTCATGAGGTAT+TGG | 0.392243 | 3.3:-58195917 | None:intergenic |
| TCCTGATGAGAAACCTCTTC+TGG | 0.392877 | 3.3:+58195652 | MS.gene049693:CDS |
| ACCAGAAGAGGTTTCTCATC+AGG | 0.412594 | 3.3:-58195653 | None:intergenic |
| GGTTTACATGCCTCAATTGT+TGG | 0.414004 | 3.3:-58195896 | None:intergenic |
| GGGTGTATAGGCTTACGTTT+TGG | 0.425421 | 3.3:-58195341 | None:intergenic |
| CGGGCCTGGCGACGCATTGA+AGG | 0.426529 | 3.3:+58194891 | MS.gene049693:CDS |
| AGTGTAGATAAAACTGATTT+GGG | 0.427868 | 3.3:-58195476 | None:intergenic |
| CTTGAAGCCTTAAAGCTGTA+TGG | 0.441266 | 3.3:+58194867 | MS.gene049693:CDS |
| TCCGTTTGGTGTATCTGAAT+CGG | 0.446379 | 3.3:-58195522 | None:intergenic |
| ATCGGAGATAAACTTCCGTT+TGG | 0.463160 | 3.3:-58195536 | None:intergenic |
| TTCAAAATGTAGGATCAAGA+TGG | 0.466323 | 3.3:+58194560 | MS.gene049693:intron |
| TAAAGCTGTATGGCCGGGCC+TGG | 0.467187 | 3.3:+58194877 | MS.gene049693:CDS |
| TTGCGAGGATAAGGGTGTAT+AGG | 0.468076 | 3.3:-58195353 | None:intergenic |
| CATACAGCTTTAAGGCTTCA+AGG | 0.472400 | 3.3:-58194866 | None:intergenic |
| CCAGCTACATTTCCTACTGC+AGG | 0.473440 | 3.3:-58194605 | None:intergenic |
| TGCAGAGATGAATGTTTCCT+TGG | 0.481889 | 3.3:+58194437 | None:intergenic |
| CTTCAATGCGTCGCCAGGCC+CGG | 0.484298 | 3.3:-58194890 | None:intergenic |
| CAGCTGTTGCAGATGAAGAC+TGG | 0.488878 | 3.3:-58196087 | None:intergenic |
| CATACCTTCAATGCGTCGCC+AGG | 0.491595 | 3.3:-58194895 | None:intergenic |
| ACACAACTAATCGATGATAT+CGG | 0.497406 | 3.3:-58195554 | None:intergenic |
| AAGCCTTAAAGCTGTATGGC+CGG | 0.499730 | 3.3:+58194871 | MS.gene049693:CDS |
| CAACTAGCTTGCGAGGATAA+GGG | 0.505567 | 3.3:-58195361 | None:intergenic |
| GGCGCAAAACTTGTGGGAAA+GGG | 0.514405 | 3.3:+58196026 | MS.gene049693:CDS |
| AGGAAGTTAGTTACCAGAAG+AGG | 0.529786 | 3.3:-58195665 | None:intergenic |
| GAGTGAGGCGCAAAACTTGT+GGG | 0.530305 | 3.3:+58196020 | MS.gene049693:CDS |
| CAGGTCTGAAAACACTTGCT+CGG | 0.531679 | 3.3:-58195577 | None:intergenic |
| AGCCTAGCTTCTTCCTCTGA+CGG | 0.540972 | 3.3:-58195614 | None:intergenic |
| AGGCGCAAAACTTGTGGGAA+AGG | 0.542444 | 3.3:+58196025 | MS.gene049693:CDS |
| TATCGAAACAGAGAGAAAGA+TGG | 0.552512 | 3.3:+58194820 | MS.gene049693:CDS |
| TCCTACTGCAGGGCTAACAC+TGG | 0.552965 | 3.3:-58194594 | None:intergenic |
| AGCCTTAAAGCTGTATGGCC+GGG | 0.555613 | 3.3:+58194872 | MS.gene049693:CDS |
| CGCCGTCAGAGGAAGAAGCT+AGG | 0.567975 | 3.3:+58195612 | MS.gene049693:CDS |
| ACACTTGGTTCCGAAAACCT+TGG | 0.579769 | 3.3:+58195494 | MS.gene049693:CDS |
| TCCGATTCAGATACACCAAA+CGG | 0.581293 | 3.3:+58195521 | MS.gene049693:CDS |
| TCCTCGCAAGCTAGTTGAGA+CGG | 0.596548 | 3.3:+58195367 | MS.gene049693:CDS |
| TGAATTCAAAACGCCGTCAG+AGG | 0.607534 | 3.3:+58195601 | MS.gene049693:CDS |
| CCTGCAGTAGGAAATGTAGC+TGG | 0.607570 | 3.3:+58194605 | MS.gene049693:CDS |
| TCTTACTCTTAACTGAGAGA+TGG | 0.615877 | 3.3:-58195999 | None:intergenic |
| AGAGTGAGGCGCAAAACTTG+TGG | 0.616068 | 3.3:+58196019 | MS.gene049693:CDS |
| ACCGTCTCAACTAGCTTGCG+AGG | 0.620959 | 3.3:-58195368 | None:intergenic |
| CTCAGTTAAGAGTAAGAGTG+AGG | 0.628282 | 3.3:+58196005 | MS.gene049693:CDS |
| TTTCTAAAATGTATGTCATG+AGG | 0.629732 | 3.3:-58195923 | None:intergenic |
| CAGCTACATTTCCTACTGCA+GGG | 0.637750 | 3.3:-58194604 | None:intergenic |
| CGCAAGCTAGTTGAGACGGT+CGG | 0.649032 | 3.3:+58195371 | MS.gene049693:CDS |
| TTTCTCAACACAGAACATGT+CGG | 0.659291 | 3.3:+58195019 | MS.gene049693:intron |
| TATCTGAATCGGATGAACCA+AGG | 0.669234 | 3.3:-58195511 | None:intergenic |
| TCCAGTGTTAGCCCTGCAGT+AGG | 0.679374 | 3.3:+58194593 | MS.gene049693:CDS |
| TGCAAGCATTACAAACACCA+AGG | 0.703682 | 3.3:+58195292 | MS.gene049693:CDS |
| ACATGTCGGTTCAAAGACTG+CGG | 0.722182 | 3.3:+58195033 | MS.gene049693:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCTATTTCAAAATGT+AGG | + | chr3.3:58194550-58194569 | MS.gene049693:intron | 15.0% |
| !!! | GTTTTAAATTTCCATTTATT+AGG | + | chr3.3:58194922-58194941 | MS.gene049693:intron | 15.0% |
| !!! | AATTTTCTTTGTACTTCAAT+AGG | + | chr3.3:58194779-58194798 | MS.gene049693:intron | 20.0% |
| !!! | ATCAAACTCTTAAACTTTTT+GGG | + | chr3.3:58195834-58195853 | MS.gene049693:CDS | 20.0% |
| !!! | ATTGTTTTGTTTATGGTTTA+TGG | - | chr3.3:58195123-58195142 | None:intergenic | 20.0% |
| ! | AAGTGTAGATAAAACTGATT+TGG | - | chr3.3:58195480-58195499 | None:intergenic | 25.0% |
| ! | ACTTAACATAGCTATTCTAT+AGG | - | chr3.3:58195163-58195182 | None:intergenic | 25.0% |
| ! | CTTAACATAGCTATTCTATA+GGG | - | chr3.3:58195162-58195181 | None:intergenic | 25.0% |
| ! | TCATTGTCAATAAGATGAAA+TGG | - | chr3.3:58195694-58195713 | None:intergenic | 25.0% |
| !! | AAACAATGCTAAGATTTTGA+TGG | + | chr3.3:58195136-58195155 | MS.gene049693:intron | 25.0% |
| !! | AGTGTAGATAAAACTGATTT+GGG | - | chr3.3:58195479-58195498 | None:intergenic | 25.0% |
| !! | CATCAAACTCTTAAACTTTT+TGG | + | chr3.3:58195833-58195852 | MS.gene049693:CDS | 25.0% |
| !! | TCAATAAGATGAAATGGATT+AGG | - | chr3.3:58195688-58195707 | None:intergenic | 25.0% |
| !! | TTTAACATGCACCTTTTATA+TGG | - | chr3.3:58196058-58196077 | None:intergenic | 25.0% |
| !!! | AAATCAGTTTTATCTACACT+TGG | + | chr3.3:58195479-58195498 | MS.gene049693:CDS | 25.0% |
| !!! | CATGACATACATTTTAGAAA+GGG | + | chr3.3:58195926-58195945 | MS.gene049693:CDS | 25.0% |
| !!! | TCATGACATACATTTTAGAA+AGG | + | chr3.3:58195925-58195944 | MS.gene049693:CDS | 25.0% |
| !!! | TCTTAGCATTGTTTTGTTTA+TGG | - | chr3.3:58195130-58195149 | None:intergenic | 25.0% |
| !!! | TTTCTAAAATGTATGTCATG+AGG | - | chr3.3:58195926-58195945 | None:intergenic | 25.0% |
| AAATGTATGTCATGAGGTAT+TGG | - | chr3.3:58195920-58195939 | None:intergenic | 30.0% | |
| ACACAACTAATCGATGATAT+CGG | - | chr3.3:58195557-58195576 | None:intergenic | 30.0% | |
| AGAAATTTCAATCCCGAAAA+AGG | + | chr3.3:58195400-58195419 | MS.gene049693:CDS | 30.0% | |
| AGCTGTACTTTCCTAATAAA+TGG | - | chr3.3:58194936-58194955 | None:intergenic | 30.0% | |
| CTCTGTTTCGATATAGTATA+TGG | - | chr3.3:58194813-58194832 | None:intergenic | 30.0% | |
| GAAGTTCAAACACAAATAGA+TGG | - | chr3.3:58195218-58195237 | None:intergenic | 30.0% | |
| TTCAAAATGTAGGATCAAGA+TGG | + | chr3.3:58194560-58194579 | MS.gene049693:intron | 30.0% | |
| ! | AGGAATTTCAATTGATTCCT+TGG | - | chr3.3:58195312-58195331 | None:intergenic | 30.0% |
| ! | GCAACTTATTTGAGATAGAA+GGG | + | chr3.3:58195191-58195210 | MS.gene049693:intron | 30.0% |
| ! | TATGCTCTTAAGGTTTTCTA+CGG | + | chr3.3:58194683-58194702 | MS.gene049693:intron | 30.0% |
| ! | TGCAACTTATTTGAGATAGA+AGG | + | chr3.3:58195190-58195209 | MS.gene049693:intron | 30.0% |
| ! | TTAGAGTTCATTGCCTTTTT+CGG | - | chr3.3:58195416-58195435 | None:intergenic | 30.0% |
| !! | ATAAAACTGATTTGGGAGAT+TGG | - | chr3.3:58195472-58195491 | None:intergenic | 30.0% |
| !! | ATACATTTTAGAAAGGGAGA+AGG | + | chr3.3:58195932-58195951 | MS.gene049693:CDS | 30.0% |
| !! | TAATTGATTTCTGGTCTAGT+AGG | + | chr3.3:58194464-58194483 | MS.gene049693:intron | 30.0% |
| AAGGGTTTGTGCCATATAAA+AGG | + | chr3.3:58196044-58196063 | MS.gene049693:CDS | 35.0% | |
| CACGAATGATTATGCTCTTA+AGG | + | chr3.3:58194673-58194692 | MS.gene049693:CDS | 35.0% | |
| CAGAAATCAATTATCCACCA+AGG | - | chr3.3:58194457-58194476 | None:intergenic | 35.0% | |
| CTGATATGGAATCAAGACAA+AGG | - | chr3.3:58195255-58195274 | None:intergenic | 35.0% | |
| CTTTGTCTTGATTCCATATC+AGG | + | chr3.3:58195253-58195272 | MS.gene049693:intron | 35.0% | |
| GAAGGAAAATTGGAACTTCT+TGG | + | chr3.3:58195950-58195969 | MS.gene049693:CDS | 35.0% | |
| TAGAAAGGGAGAAGGAAAAT+TGG | + | chr3.3:58195940-58195959 | MS.gene049693:CDS | 35.0% | |
| TATCGAAACAGAGAGAAAGA+TGG | + | chr3.3:58194820-58194839 | MS.gene049693:CDS | 35.0% | |
| TCTTACTCTTAACTGAGAGA+TGG | - | chr3.3:58196002-58196021 | None:intergenic | 35.0% | |
| TCTTTGTACTTCAATAGGCA+AGG | + | chr3.3:58194784-58194803 | MS.gene049693:intron | 35.0% | |
| TGATTCCATATCAGGTTCTT+CGG | + | chr3.3:58195261-58195280 | MS.gene049693:intron | 35.0% | |
| TTTCTCAACACAGAACATGT+CGG | + | chr3.3:58195019-58195038 | MS.gene049693:intron | 35.0% | |
| ! | ACCATCTTTTCCAACAATTG+AGG | + | chr3.3:58195886-58195905 | MS.gene049693:CDS | 35.0% |
| ! | CTGAGTTGAATATGAGTAAC+AGG | - | chr3.3:58194638-58194657 | None:intergenic | 35.0% |
| ! | CTTGGTGGATAATTGATTTC+TGG | + | chr3.3:58194455-58194474 | MS.gene049693:intron | 35.0% |
| ! | TAGAGTTCATTGCCTTTTTC+GGG | - | chr3.3:58195415-58195434 | None:intergenic | 35.0% |
| ! | TGCTCAGAAGTTTTTCTCTA+AGG | + | chr3.3:58195072-58195091 | MS.gene049693:CDS | 35.0% |
| ! | TTAGGAAAGTACAGCTAACA+AGG | + | chr3.3:58194940-58194959 | MS.gene049693:intron | 35.0% |
| ! | TTTCTAGCGATAAGATCAAG+TGG | - | chr3.3:58195753-58195772 | None:intergenic | 35.0% |
| !! | TTTCTCTAAGGTCTATTCTC+AGG | + | chr3.3:58195084-58195103 | MS.gene049693:intron | 35.0% |
| AGGAAGTTAGTTACCAGAAG+AGG | - | chr3.3:58195668-58195687 | None:intergenic | 40.0% | |
| ATCGGAGATAAACTTCCGTT+TGG | - | chr3.3:58195539-58195558 | None:intergenic | 40.0% | |
| CTCAGTTAAGAGTAAGAGTG+AGG | + | chr3.3:58196005-58196024 | MS.gene049693:CDS | 40.0% | |
| CTTGAAGCCTTAAAGCTGTA+TGG | + | chr3.3:58194867-58194886 | MS.gene049693:CDS | 40.0% | |
| GATTCCATATCAGGTTCTTC+GGG | + | chr3.3:58195262-58195281 | MS.gene049693:intron | 40.0% | |
| GCCTCAATTGTTGGAAAAGA+TGG | - | chr3.3:58195890-58195909 | None:intergenic | 40.0% | |
| GGTTTACATGCCTCAATTGT+TGG | - | chr3.3:58195899-58195918 | None:intergenic | 40.0% | |
| TATCTGAATCGGATGAACCA+AGG | - | chr3.3:58195514-58195533 | None:intergenic | 40.0% | |
| TCCGATTCAGATACACCAAA+CGG | + | chr3.3:58195521-58195540 | MS.gene049693:CDS | 40.0% | |
| TGAAGATGTATGACTGTGCT+TGG | + | chr3.3:58194974-58194993 | MS.gene049693:intron | 40.0% | |
| TGCAAGCATTACAAACACCA+AGG | + | chr3.3:58195292-58195311 | MS.gene049693:CDS | 40.0% | |
| ! | ATCGGATGAACCAAGGTTTT+CGG | - | chr3.3:58195507-58195526 | None:intergenic | 40.0% |
| !! | ATAGGCTTACGTTTTGGTCT+AGG | - | chr3.3:58195338-58195357 | None:intergenic | 40.0% |
| !! | CATACAGCTTTAAGGCTTCA+AGG | - | chr3.3:58194869-58194888 | None:intergenic | 40.0% |
| !! | TCCGTTTGGTGTATCTGAAT+CGG | - | chr3.3:58195525-58195544 | None:intergenic | 40.0% |
| AAGCCTTAAAGCTGTATGGC+CGG | + | chr3.3:58194871-58194890 | MS.gene049693:CDS | 45.0% | |
| ACACTTGGTTCCGAAAACCT+TGG | + | chr3.3:58195494-58195513 | MS.gene049693:CDS | 45.0% | |
| ACCAGAAGAGGTTTCTCATC+AGG | - | chr3.3:58195656-58195675 | None:intergenic | 45.0% | |
| CAGCTACATTTCCTACTGCA+GGG | - | chr3.3:58194607-58194626 | None:intergenic | 45.0% | |
| CAGGTCTGAAAACACTTGCT+CGG | - | chr3.3:58195580-58195599 | None:intergenic | 45.0% | |
| CTAGCGATAAGATCAAGTGG+AGG | - | chr3.3:58195750-58195769 | None:intergenic | 45.0% | |
| TCCTGATGAGAAACCTCTTC+TGG | + | chr3.3:58195652-58195671 | MS.gene049693:CDS | 45.0% | |
| TCTGAGCATGACTTCGAATC+TGG | - | chr3.3:58195060-58195079 | None:intergenic | 45.0% | |
| TCTGGTCTAGTAGGCTCTTA+AGG | + | chr3.3:58194473-58194492 | MS.gene049693:intron | 45.0% | |
| TGAATTCAAAACGCCGTCAG+AGG | + | chr3.3:58195601-58195620 | MS.gene049693:CDS | 45.0% | |
| ! | CAACTAGCTTGCGAGGATAA+GGG | - | chr3.3:58195364-58195383 | None:intergenic | 45.0% |
| ! | GGGTGTATAGGCTTACGTTT+TGG | - | chr3.3:58195344-58195363 | None:intergenic | 45.0% |
| ! | TCAACTAGCTTGCGAGGATA+AGG | - | chr3.3:58195365-58195384 | None:intergenic | 45.0% |
| ! | TTGCGAGGATAAGGGTGTAT+AGG | - | chr3.3:58195356-58195375 | None:intergenic | 45.0% |
| !! | ACATGTCGGTTCAAAGACTG+CGG | + | chr3.3:58195033-58195052 | MS.gene049693:CDS | 45.0% |
| !! | TTACGTTTTGGTCTAGGAGG+AGG | - | chr3.3:58195332-58195351 | None:intergenic | 45.0% |
| AGAGTGAGGCGCAAAACTTG+TGG | + | chr3.3:58196019-58196038 | MS.gene049693:CDS | 50.0% | |
| AGCCTAGCTTCTTCCTCTGA+CGG | - | chr3.3:58195617-58195636 | None:intergenic | 50.0% | |
| AGCCTTAAAGCTGTATGGCC+GGG | + | chr3.3:58194872-58194891 | MS.gene049693:CDS | 50.0% | |
| AGGCGCAAAACTTGTGGGAA+AGG | + | chr3.3:58196025-58196044 | MS.gene049693:CDS | 50.0% | |
| CAGCTGTTGCAGATGAAGAC+TGG | - | chr3.3:58196090-58196109 | None:intergenic | 50.0% | |
| CCAGCTACATTTCCTACTGC+AGG | - | chr3.3:58194608-58194627 | None:intergenic | 50.0% | |
| CCTGCAGTAGGAAATGTAGC+TGG | + | chr3.3:58194605-58194624 | MS.gene049693:CDS | 50.0% | |
| GAGTGAGGCGCAAAACTTGT+GGG | + | chr3.3:58196020-58196039 | MS.gene049693:CDS | 50.0% | |
| GGCGCAAAACTTGTGGGAAA+GGG | + | chr3.3:58196026-58196045 | MS.gene049693:CDS | 50.0% | |
| GTGTCCCGAAGAACCTGATA+TGG | - | chr3.3:58195269-58195288 | None:intergenic | 50.0% | |
| TCCTCGCAAGCTAGTTGAGA+CGG | + | chr3.3:58195367-58195386 | MS.gene049693:CDS | 50.0% | |
| !! | GACGGCGTTTTGAATTCAGC+AGG | - | chr3.3:58195599-58195618 | None:intergenic | 50.0% |
| !! | GGCTTACGTTTTGGTCTAGG+AGG | - | chr3.3:58195335-58195354 | None:intergenic | 50.0% |
| CATACCTTCAATGCGTCGCC+AGG | - | chr3.3:58194898-58194917 | None:intergenic | 55.0% | |
| CGCAAGCTAGTTGAGACGGT+CGG | + | chr3.3:58195371-58195390 | MS.gene049693:CDS | 55.0% | |
| CTGGCGACGCATTGAAGGTA+TGG | + | chr3.3:58194896-58194915 | MS.gene049693:intron | 55.0% | |
| TCCAGTGTTAGCCCTGCAGT+AGG | + | chr3.3:58194593-58194612 | MS.gene049693:CDS | 55.0% | |
| TCCTACTGCAGGGCTAACAC+TGG | - | chr3.3:58194597-58194616 | None:intergenic | 55.0% | |
| ! | ACCGTCTCAACTAGCTTGCG+AGG | - | chr3.3:58195371-58195390 | None:intergenic | 55.0% |
| ! | CGACGCATTGAAGGTATGGC+TGG | + | chr3.3:58194900-58194919 | MS.gene049693:intron | 55.0% |
| CGCCGTCAGAGGAAGAAGCT+AGG | + | chr3.3:58195612-58195631 | MS.gene049693:CDS | 60.0% | |
| GGCCCGGCCATACAGCTTTA+AGG | - | chr3.3:58194877-58194896 | None:intergenic | 60.0% | |
| TAAAGCTGTATGGCCGGGCC+TGG | + | chr3.3:58194877-58194896 | MS.gene049693:CDS | 60.0% | |
| CTTCAATGCGTCGCCAGGCC+CGG | - | chr3.3:58194893-58194912 | None:intergenic | 65.0% | |
| CGGGCCTGGCGACGCATTGA+AGG | + | chr3.3:58194891-58194910 | MS.gene049693:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58194444 | 58196120 | 58194444 | ID=MS.gene049693 |
| chr3.3 | mRNA | 58194444 | 58196120 | 58194444 | ID=MS.gene049693.t1;Parent=MS.gene049693 |
| chr3.3 | exon | 58194444 | 58194458 | 58194444 | ID=MS.gene049693.t1.exon1;Parent=MS.gene049693.t1 |
| chr3.3 | CDS | 58194444 | 58194458 | 58194444 | ID=cds.MS.gene049693.t1;Parent=MS.gene049693.t1 |
| chr3.3 | exon | 58194572 | 58194694 | 58194572 | ID=MS.gene049693.t1.exon2;Parent=MS.gene049693.t1 |
| chr3.3 | CDS | 58194572 | 58194694 | 58194572 | ID=cds.MS.gene049693.t1;Parent=MS.gene049693.t1 |
| chr3.3 | exon | 58194801 | 58194912 | 58194801 | ID=MS.gene049693.t1.exon3;Parent=MS.gene049693.t1 |
| chr3.3 | CDS | 58194801 | 58194912 | 58194801 | ID=cds.MS.gene049693.t1;Parent=MS.gene049693.t1 |
| chr3.3 | exon | 58195032 | 58195093 | 58195032 | ID=MS.gene049693.t1.exon4;Parent=MS.gene049693.t1 |
| chr3.3 | CDS | 58195032 | 58195093 | 58195032 | ID=cds.MS.gene049693.t1;Parent=MS.gene049693.t1 |
| chr3.3 | exon | 58195275 | 58195673 | 58195275 | ID=MS.gene049693.t1.exon5;Parent=MS.gene049693.t1 |
| chr3.3 | CDS | 58195275 | 58195673 | 58195275 | ID=cds.MS.gene049693.t1;Parent=MS.gene049693.t1 |
| chr3.3 | exon | 58195770 | 58196120 | 58195770 | ID=MS.gene049693.t1.exon6;Parent=MS.gene049693.t1 |
| chr3.3 | CDS | 58195770 | 58196120 | 58195770 | ID=cds.MS.gene049693.t1;Parent=MS.gene049693.t1 |
| Gene Sequence |
| Protein sequence |
