AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049700.t1 MTR_5g075220 92.222 90 5 1 352 439 323 412 2.20e-47 172
MS.gene049700.t1 MTR_5g075220 96.154 52 2 0 289 340 166 217 3.34e-24 106
MS.gene049700.t1 MTR_8g006190 42.935 184 81 3 102 276 238 406 7.28e-36 138
MS.gene049700.t1 MTR_8g006190 40.437 183 98 1 105 276 77 259 6.87e-31 124
MS.gene049700.t1 MTR_8g006190 42.935 184 81 3 102 276 246 414 9.60e-36 138
MS.gene049700.t1 MTR_8g006190 40.437 183 98 1 105 276 85 267 1.07e-30 124
MS.gene049700.t1 MTR_6g016260 69.444 72 22 0 356 427 306 377 7.64e-24 105
MS.gene049700.t1 MTR_6g016260 88.462 52 6 0 289 340 145 196 2.20e-14 75.9
MS.gene049700.t1 MTR_0283s0050 33.793 145 87 2 205 340 69 213 8.79e-19 86.7
MS.gene049700.t1 MTR_5g097530 33.793 145 87 2 205 340 69 213 2.03e-18 85.9
MS.gene049700.t1 MTR_3g099940 69.091 55 17 0 286 340 163 217 2.79e-18 85.5
MS.gene049700.t1 MTR_3g056010 45.098 102 47 2 248 340 115 216 3.43e-18 85.5
MS.gene049700.t1 MTR_3g056025 45.098 102 47 2 248 340 115 216 3.73e-18 85.5
MS.gene049700.t1 MTR_7g029020 45.098 102 47 2 248 340 115 216 8.03e-18 84.3
MS.gene049700.t1 MTR_7g114680 74.545 55 13 1 286 340 160 213 1.84e-17 85.9
MS.gene049700.t1 MTR_7g114680 36.424 151 83 6 289 429 289 436 4.23e-15 78.6
MS.gene049700.t1 MTR_7g114680 74.545 55 13 1 286 340 146 199 1.87e-17 85.9
MS.gene049700.t1 MTR_7g114680 36.424 151 83 6 289 429 275 422 4.17e-15 78.6
MS.gene049700.t1 MTR_7g072860 80.000 50 10 0 291 340 169 218 2.02e-17 85.5
MS.gene049700.t1 MTR_7g072860 52.113 71 34 0 355 425 324 394 7.91e-16 80.5
MS.gene049700.t1 MTR_7g072640 80.000 50 10 0 291 340 169 218 2.02e-17 85.5
MS.gene049700.t1 MTR_7g072640 52.113 71 34 0 355 425 324 394 7.91e-16 80.5
MS.gene049700.t1 MTR_5g094390 35.862 145 78 4 211 340 73 217 2.18e-17 83.2
MS.gene049700.t1 MTR_1g081330 72.727 55 14 1 286 340 75 128 1.43e-16 82.8
MS.gene049700.t1 MTR_1g081330 53.521 71 32 1 360 430 285 354 4.53e-15 78.2
MS.gene049700.t1 MTR_1g081330 72.727 55 14 1 286 340 160 213 1.60e-16 82.8
MS.gene049700.t1 MTR_1g081330 53.521 71 32 1 360 430 370 439 4.90e-15 78.2
MS.gene049700.t1 MTR_1g103850 41.739 115 51 2 330 429 318 431 5.98e-16 81.3
MS.gene049700.t1 MTR_1g103850 75.000 52 11 2 289 340 163 212 4.59e-15 78.2
MS.gene049700.t1 MTR_3g095680 74.000 50 12 1 291 340 30 78 1.21e-15 79.7
MS.gene049700.t1 MTR_3g095680 74.000 50 12 1 291 340 174 222 1.91e-15 79.3
MS.gene049700.t1 MTR_3g095680 74.000 50 12 1 291 340 206 254 2.34e-15 79.3
MS.gene049700.t1 MTR_8g093090 45.098 102 46 3 248 340 40 140 2.35e-15 79.0
MS.gene049700.t1 MTR_8g093090 37.143 140 74 4 214 340 102 240 2.87e-15 79.0
MS.gene049700.t1 MTR_8g093090 37.143 140 74 4 214 340 84 222 3.12e-15 78.6
MS.gene049700.t1 MTR_8g093090 74.000 50 12 1 291 340 30 78 4.84e-15 77.8
MS.gene049700.t1 MTR_4g123750 30.387 181 114 4 105 281 115 287 3.30e-14 73.9
MS.gene049700.t1 MTR_3g076650 46.099 141 61 4 214 340 77 216 6.79e-14 74.3
MS.gene049700.t1 MTR_3g076650 49.231 65 33 0 362 426 338 402 3.05e-11 66.2
MS.gene049700.t1 MTR_4g028830 84.615 52 8 0 289 340 163 214 7.46e-14 74.3
MS.gene049700.t1 MTR_4g028830 56.962 79 33 1 355 433 330 407 9.37e-14 73.9
MS.gene049700.t1 MTR_3g062420 48.750 80 21 2 289 348 1976 2055 6.13e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049700.t1 AT3G51630 62.025 79 30 0 355 433 332 410 4.49e-23 102
MS.gene049700.t1 AT3G51630 84.615 52 8 0 289 340 164 215 1.49e-21 98.2
MS.gene049700.t1 AT3G51630 62.025 79 30 0 355 433 332 410 4.49e-23 102
MS.gene049700.t1 AT3G51630 84.615 52 8 0 289 340 164 215 1.49e-21 98.2
MS.gene049700.t1 AT3G48260 76.923 52 12 0 289 340 66 117 7.62e-19 89.0
MS.gene049700.t1 AT3G48260 50.769 65 31 1 362 425 230 294 2.15e-11 66.2
MS.gene049700.t1 AT3G48260 72.727 55 15 0 286 340 158 212 1.32e-18 89.0
MS.gene049700.t1 AT3G48260 50.769 65 31 1 362 425 325 389 2.51e-11 66.2
MS.gene049700.t1 AT5G58350 76.923 52 12 0 289 340 158 209 2.38e-18 88.2
MS.gene049700.t1 AT5G58350 53.750 80 36 1 355 434 320 398 4.94e-16 81.3
MS.gene049700.t1 AT5G55560 39.474 114 60 2 236 340 108 221 2.49e-17 83.2
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 75 128 7.38e-17 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 282 359 4.90e-15 77.4
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 75 128 7.38e-17 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 282 359 4.90e-15 77.4
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 75 128 7.38e-17 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 282 359 4.90e-15 77.4
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 75 128 7.38e-17 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 282 359 4.90e-15 77.4
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 75 128 7.38e-17 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 282 359 4.90e-15 77.4
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 124 177 1.05e-16 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 331 408 5.87e-15 77.4
MS.gene049700.t1 AT5G28080 70.909 55 15 1 286 340 161 214 1.35e-16 82.8
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 368 445 5.26e-15 77.8
MS.gene049700.t1 AT3G04910 76.923 52 11 1 289 340 37 87 1.36e-16 82.8
MS.gene049700.t1 AT3G04910 54.545 66 30 0 360 425 273 338 6.29e-14 74.7
MS.gene049700.t1 AT3G04910 76.923 52 11 1 289 340 140 190 1.40e-16 83.2
MS.gene049700.t1 AT3G04910 54.545 66 30 0 360 425 376 441 8.34e-14 74.3
MS.gene049700.t1 AT3G04910 76.923 52 11 1 289 340 163 213 1.75e-16 82.8
MS.gene049700.t1 AT3G04910 54.545 66 30 0 360 425 399 464 7.95e-14 74.3
MS.gene049700.t1 AT1G49160 71.154 52 14 1 289 340 40 90 5.88e-16 80.5
MS.gene049700.t1 AT1G49160 71.154 52 14 1 289 340 40 90 5.88e-16 80.5
MS.gene049700.t1 AT1G49160 71.154 52 14 1 289 340 40 90 5.88e-16 80.5
MS.gene049700.t1 AT1G49160 67.273 55 17 1 286 340 146 199 7.81e-16 80.5
MS.gene049700.t1 AT1G49160 71.154 52 14 1 289 340 167 217 8.95e-16 80.5
MS.gene049700.t1 AT3G18750 67.273 55 17 1 286 340 146 199 9.04e-16 80.1
MS.gene049700.t1 AT3G18750 71.154 52 14 1 289 340 167 217 9.54e-16 80.1
MS.gene049700.t1 AT3G18750 71.154 52 14 1 289 340 167 217 9.54e-16 80.1
MS.gene049700.t1 AT3G18750 71.154 52 14 1 289 340 167 217 9.54e-16 80.1
MS.gene049700.t1 AT1G49160 71.154 52 14 1 289 340 214 264 1.24e-15 80.1
MS.gene049700.t1 AT1G49160 71.154 52 14 1 289 340 214 264 1.36e-15 79.7
MS.gene049700.t1 AT3G22420 69.091 55 16 1 286 340 231 284 1.70e-15 79.7
MS.gene049700.t1 AT3G22420 53.247 77 34 2 355 431 417 491 6.10e-15 77.8
MS.gene049700.t1 AT3G22420 69.091 55 16 1 286 340 231 284 1.72e-15 79.7
MS.gene049700.t1 AT3G22420 69.091 55 16 1 286 340 160 213 2.07e-15 79.3
MS.gene049700.t1 AT3G22420 53.247 77 34 2 355 431 346 420 5.43e-15 77.8
MS.gene049700.t1 AT3G22420 69.091 55 16 1 286 340 160 213 2.09e-15 79.3
MS.gene049700.t1 AT5G28080 50.633 79 38 1 355 433 175 252 2.26e-15 77.0
MS.gene049700.t1 AT3G22420 53.247 77 34 2 355 431 378 452 7.21e-15 77.4

Find 113 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACCCTCTTCTCTCTTTC+TGG 0.113688 3.3:+58275645 MS.gene049700:CDS
CTCCTCTTCGTCGGTGGGTT+GGG 0.189043 3.3:+58275868 MS.gene049700:CDS
TTCGGGGTGGATCTAGCTTT+TGG 0.210157 3.3:+58275765 MS.gene049700:CDS
CTTAAATATTTCAACCTTCA+TGG 0.235685 3.3:-58276093 None:intergenic
TATTCTTCCTCATACATTTC+CGG 0.238340 3.3:-58277878 None:intergenic
CAATCAGCTCATAGTGTTAT+AGG 0.246199 3.3:+58277639 MS.gene049700:CDS
TTCTCTGATGGTTGTGGTAC+TGG 0.279762 3.3:+58275684 MS.gene049700:CDS
CTTGCTGATGTTTACTCATT+TGG 0.280179 3.3:+58277908 MS.gene049700:CDS
TAATGCTGCAGCTAACAAAT+TGG 0.283155 3.3:+58276451 MS.gene049700:CDS
AATCTTGGACTAGTGAAAAT+TGG 0.295764 3.3:+58277582 MS.gene049700:CDS
TCCTCTTCGTCGGTGGGTTG+GGG 0.309705 3.3:+58275869 MS.gene049700:CDS
GGTTGTTGATAACAAATTCT+AGG 0.311115 3.3:+58278995 MS.gene049700:CDS
TAAAGGACTTGATTCAGATT+TGG 0.327319 3.3:+58276407 MS.gene049700:CDS
AATTGGTTCTGTTGATGCTT+TGG 0.327722 3.3:+58278935 MS.gene049700:CDS
TTGGGCAATAGCGAGGTTAT+TGG 0.331692 3.3:+58278954 MS.gene049700:CDS
AGAAAGATAGTATCATCTTC+AGG 0.339904 3.3:-58278148 None:intergenic
CGCCGCACCACCGCCGTTGA+AGG 0.341726 3.3:-58275600 None:intergenic
GCATCCACTCTTGAATTTGA+TGG 0.342132 3.3:-58276483 None:intergenic
GAAAGCCTTTCTCCAAATCT+TGG 0.349601 3.3:+58277567 MS.gene049700:CDS
GTAATCATCGAAGCAGAAAA+AGG 0.363079 3.3:+58276122 MS.gene049700:CDS
ATCACCAACAGTGAAGGATT+TGG 0.367967 3.3:-58276240 None:intergenic
TCTCCTCTTCGTCGGTGGGT+TGG 0.368022 3.3:+58275867 MS.gene049700:CDS
ATATTAATGCAGGTTCTGTT+AGG 0.368467 3.3:+58278313 MS.gene049700:intron
AGCAGCAGCTGGATATATTA+AGG 0.376806 3.3:+58276058 MS.gene049700:CDS
CTAGTCCAAGATTTGGAGAA+AGG 0.389327 3.3:-58277572 None:intergenic
ATTGGTTCTGTTGATGCTTT+GGG 0.391863 3.3:+58278936 MS.gene049700:CDS
AGAATTGGAGATTTCTGATT+GGG 0.392856 3.3:+58278401 MS.gene049700:CDS
AATGGAGATGGTAAAAGAAT+TGG 0.394174 3.3:+58278386 MS.gene049700:CDS
GCTGCAGCATTAAAGTTAGA+TGG 0.405381 3.3:-58276440 None:intergenic
GTTGGTGGGTGGTTACAATC+TGG 0.406206 3.3:+58275788 MS.gene049700:CDS
GTTAGGAACACCGGAGTTCA+TGG 0.418937 3.3:+58277853 MS.gene049700:intron
CATCCACTCTTGAATTTGAT+GGG 0.420897 3.3:-58276482 None:intergenic
CATGTTCAAATATGATCAAT+TGG 0.425541 3.3:+58278506 MS.gene049700:CDS
AAATCCCCATTGTTTCTTTG+AGG 0.428316 3.3:-58276003 None:intergenic
ATCATATTTGCAATATCAAA+AGG 0.432566 3.3:-58278426 None:intergenic
TTGTGCCTCAAAGAAACAAT+GGG 0.443382 3.3:+58275998 MS.gene049700:CDS
GAAGGTTGAAATATTTAAGA+TGG 0.446865 3.3:+58276097 MS.gene049700:CDS
AAGAATTGGAGATTTCTGAT+TGG 0.452979 3.3:+58278400 MS.gene049700:CDS
CGTTTCTCCTCTTCGTCGGT+GGG 0.456848 3.3:+58275863 MS.gene049700:CDS
TCAAAGACGGATCACCCCTC+TGG 0.460653 3.3:+58276209 MS.gene049700:CDS
ATCTCCAAATCCTTCACTGT+TGG 0.461179 3.3:+58276236 MS.gene049700:CDS
CAATGTATGATTCCTTCACT+TGG 0.463720 3.3:+58276171 MS.gene049700:CDS
TGCAGAAGGAGAGGCTAGTT+CGG 0.467701 3.3:-58275724 None:intergenic
ACTCAGAGAGATGAAGTTTG+AGG 0.477458 3.3:-58276731 None:intergenic
TGGAGATATCTGCCTTGGAC+TGG 0.484810 3.3:+58278526 MS.gene049700:CDS
CCTCTTCGTCGGTGGGTTGG+GGG 0.494765 3.3:+58275870 MS.gene049700:CDS
CATCCGAGCCTCTTCTCTGA+TGG 0.506541 3.3:+58275672 MS.gene049700:CDS
GCGTTTCTCCTCTTCGTCGG+TGG 0.507353 3.3:+58275862 MS.gene049700:CDS
CGAGCGTTTCTCCTCTTCGT+CGG 0.508733 3.3:+58275859 MS.gene049700:CDS
TCCGATGCAGCCTTCAACGG+CGG 0.511433 3.3:+58275590 None:intergenic
TCAATTGGAGATATCTGCCT+TGG 0.512457 3.3:+58278521 MS.gene049700:CDS
GATGCAGCCTTCAACGGCGG+TGG 0.524426 3.3:+58275593 None:intergenic
AGCCTTCAACGGCGGTGGTG+CGG 0.530053 3.3:+58275598 MS.gene049700:CDS
GAACTCGATGAAGCAGCAGC+TGG 0.531083 3.3:+58276047 MS.gene049700:CDS
ATTGATCATATTTGAACATG+TGG 0.532277 3.3:-58278503 None:intergenic
AGCCTCTTCTCTGATGGTTG+TGG 0.533365 3.3:+58275678 MS.gene049700:CDS
TGGTTACAATCTGGATCTGC+GGG 0.533434 3.3:+58275797 MS.gene049700:CDS
CTAGTGAAAATTGGTGACCT+TGG 0.535240 3.3:+58277591 MS.gene049700:CDS
CATGGCACCGGAAATGTATG+AGG 0.536678 3.3:+58277871 MS.gene049700:CDS
GAAAGAGAGAAGAGGGTCGA+CGG 0.539301 3.3:-58275642 None:intergenic
TCACTGTTGGTGATAGAGAC+TGG 0.539530 3.3:+58276249 MS.gene049700:CDS
AGTATCAGTGAGAATATCAA+AGG 0.542221 3.3:-58278349 None:intergenic
GGTTGTGGTACTGGTTTCGC+GGG 0.542572 3.3:+58275693 MS.gene049700:CDS
ACCGCCGTTGAAGGCTGCAT+CGG 0.542757 3.3:-58275591 None:intergenic
TTTGTGCCTCAAAGAAACAA+TGG 0.556579 3.3:+58275997 MS.gene049700:CDS
GTCTCTATCACCAACAGTGA+AGG 0.563167 3.3:-58276246 None:intergenic
GAGGGTCGACGGTGGTGCGG+AGG 0.563320 3.3:-58275631 None:intergenic
ATCTCATGAAACGCTGCAGA+AGG 0.565259 3.3:-58275738 None:intergenic
ATCTCCATTGCAACATCAGT+GGG 0.567371 3.3:-58278372 None:intergenic
GAAGAGGGTCGACGGTGGTG+CGG 0.573939 3.3:-58275634 None:intergenic
CGGAAACGAGATGGTGAGGA+GGG 0.575914 3.3:-58276759 None:intergenic
ACCCTCTTCTCTCTTTCTGG+CGG 0.576028 3.3:+58275648 MS.gene049700:CDS
TGGTTGTGGTACTGGTTTCG+CGG 0.576662 3.3:+58275692 MS.gene049700:CDS
TACTCCCACTGATGTTGCAA+TGG 0.578000 3.3:+58278368 MS.gene049700:CDS
ACCGCCAGAAAGAGAGAAGA+GGG 0.579253 3.3:-58275649 None:intergenic
ATCTCCGATGCAGCCTTCAA+CGG 0.580240 3.3:+58275587 None:intergenic
TCCGCATTGGAGAAAGGCAT+AGG 0.583082 3.3:+58278115 MS.gene049700:CDS
GGACTAGCTGCAATTCTCCA+AGG 0.583957 3.3:+58277612 MS.gene049700:CDS
TCCTATGCCTTTCTCCAATG+CGG 0.588916 3.3:-58278116 None:intergenic
TACCACAACCATCAGAGAAG+AGG 0.593570 3.3:-58275680 None:intergenic
TATGAGCTGATTGAGAACCT+TGG 0.593695 3.3:-58277629 None:intergenic
CAATAGCGAGGTTATTGGCA+AGG 0.595028 3.3:+58278959 MS.gene049700:CDS
ATTTCCGGTGCCATGAACTC+CGG 0.598213 3.3:-58277863 None:intergenic
CATCTCCATTGCAACATCAG+TGG 0.598278 3.3:-58278373 None:intergenic
GGAGAATTGCAGCTAGTCCA+AGG 0.598688 3.3:-58277608 None:intergenic
CGACGAAGAGGAGAAACGCT+CGG 0.601022 3.3:-58275858 None:intergenic
TTACTCACATGGCCAGTCCA+AGG 0.601258 3.3:-58278538 None:intergenic
AACACCGGAGTTCATGGCAC+CGG 0.601512 3.3:+58277859 MS.gene049700:CDS
CAAGTGAAGGAATCATACAT+TGG 0.602280 3.3:-58276170 None:intergenic
GACCGCCAGAAAGAGAGAAG+AGG 0.604590 3.3:-58275650 None:intergenic
GTGGTTACAATCTGGATCTG+CGG 0.604602 3.3:+58275796 MS.gene049700:CDS
GTATCAGTGAGAATATCAAA+GGG 0.607044 3.3:-58278348 None:intergenic
CACTGATGTTGCAATGGAGA+TGG 0.608443 3.3:+58278374 MS.gene049700:CDS
ACGTTGATGATATATACTAA+AGG 0.615722 3.3:+58276390 MS.gene049700:CDS
ATGAAACGCTGCAGAAGGAG+AGG 0.617167 3.3:-58275733 None:intergenic
AGAGAGAAGAGGGTCGACGG+TGG 0.617583 3.3:-58275639 None:intergenic
TGATGCTTTGGGCAATAGCG+AGG 0.618284 3.3:+58278947 MS.gene049700:CDS
TCTGTTTCAGTAAGCAACCA+CGG 0.619867 3.3:+58275972 MS.gene049700:intron
GTTAACACGTCTCCAAGTGA+AGG 0.620067 3.3:-58276183 None:intergenic
ACGGAAACGAGATGGTGAGG+AGG 0.620190 3.3:-58276760 None:intergenic
CAACCATCAGAGAAGAGGCT+CGG 0.621737 3.3:-58275675 None:intergenic
TCTTTGAGGCACAAAATCCG+TGG 0.623067 3.3:-58275989 None:intergenic
GCCGACGAACGGAAACGAGA+TGG 0.629314 3.3:-58276768 None:intergenic
GTGAAGGAATCATACATTGG+AGG 0.630231 3.3:-58276167 None:intergenic
GTTCCCATCAAATTCAAGAG+TGG 0.635042 3.3:+58276479 MS.gene049700:CDS
ACGTGTTAACTTCTCAAAGA+CGG 0.638300 3.3:+58276196 MS.gene049700:CDS
GATTTGGAGATCAAACCAGA+GGG 0.644983 3.3:-58276224 None:intergenic
GGACGACGCTATAACCATGA+AGG 0.649260 3.3:+58276079 MS.gene049700:CDS
CGAACGGAAACGAGATGGTG+AGG 0.657048 3.3:-58276763 None:intergenic
TGTGCCTCAAAGAAACAATG+GGG 0.671784 3.3:+58275999 MS.gene049700:CDS
GGATTTGGAGATCAAACCAG+AGG 0.684632 3.3:-58276225 None:intergenic
TAGCGAGGTTATTGGCAAGG+AGG 0.699926 3.3:+58278962 MS.gene049700:CDS
ATTTGGAGATCAAACCAGAG+GGG 0.782695 3.3:-58276223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTTATTATATATATGT+AGG + chr3.3:58276367-58276386 MS.gene049700:intron 10.0%
!! AAAAAATATTATGAGAAAAC+AGG + chr3.3:58276540-58276559 MS.gene049700:CDS 15.0%
!! CTAACAAATTCTTAATTAAT+TGG + chr3.3:58276295-58276314 MS.gene049700:intron 15.0%
!!! AAAATTTCTTATTTTGTGTT+AGG + chr3.3:58277836-58277855 MS.gene049700:intron 15.0%
!!! AAGTAACATTTTATGTTTTA+GGG + chr3.3:58278072-58278091 MS.gene049700:intron 15.0%
!!! AGTTATTAATTTGAATTACT+TGG + chr3.3:58277008-58277027 MS.gene049700:intron 15.0%
!!! TAAGTAACATTTTATGTTTT+AGG + chr3.3:58278071-58278090 MS.gene049700:intron 15.0%
!! ATAATTCATTTGCATTTAGA+TGG + chr3.3:58278599-58278618 MS.gene049700:intron 20.0%
!! ATCATATTTGCAATATCAAA+AGG - chr3.3:58278429-58278448 None:intergenic 20.0%
!! ATGAAGAAGAAAATATTGTT+AGG - chr3.3:58278295-58278314 None:intergenic 20.0%
!! TATCAATTATTTCATCAAAG+AGG - chr3.3:58277368-58277387 None:intergenic 20.0%
!! TTCGTTCAAGATTTATAATA+TGG + chr3.3:58275906-58275925 MS.gene049700:intron 20.0%
!!! AGTAACATTTTATGTTTTAG+GGG + chr3.3:58278073-58278092 MS.gene049700:intron 20.0%
!!! CATAATATTTTTTATGATGC+TGG - chr3.3:58276533-58276552 None:intergenic 20.0%
! AACATGGACAATATAAGAAA+GGG - chr3.3:58278694-58278713 None:intergenic 25.0%
! AATATAAGAAAGGGAGAAAA+AGG - chr3.3:58278685-58278704 None:intergenic 25.0%
! ACTTTAAGTATCAGTTAGTT+AGG + chr3.3:58278723-58278742 MS.gene049700:intron 25.0%
! ATACTATCACATATGTTCAT+AGG + chr3.3:58277530-58277549 MS.gene049700:intron 25.0%
! ATATAAGAAAGGGAGAAAAA+GGG - chr3.3:58278684-58278703 None:intergenic 25.0%
! ATTGATCATATTTGAACATG+TGG - chr3.3:58278506-58278525 None:intergenic 25.0%
! ATTTGAATTACTTGGAATAG+AGG + chr3.3:58277016-58277035 MS.gene049700:intron 25.0%
! CATGTTCAAATATGATCAAT+TGG + chr3.3:58278506-58278525 MS.gene049700:CDS 25.0%
! CTTAAATATTTCAACCTTCA+TGG - chr3.3:58276096-58276115 None:intergenic 25.0%
! GAAGGTTGAAATATTTAAGA+TGG + chr3.3:58276097-58276116 MS.gene049700:CDS 25.0%
! TACTATCACATATGTTCATA+GGG + chr3.3:58277531-58277550 MS.gene049700:intron 25.0%
! TATGTGATAGTATCATCTTT+AGG - chr3.3:58277523-58277542 None:intergenic 25.0%
! TATTAAAGGAGTTCAATGAT+CGG - chr3.3:58277762-58277781 None:intergenic 25.0%
! TGTGTTCTTATATTATGCAT+AGG + chr3.3:58278627-58278646 MS.gene049700:intron 25.0%
! TTTACAAGCAATAAAGAGTT+GGG + chr3.3:58277433-58277452 MS.gene049700:intron 25.0%
! TTTCTTCTTCATATTAATGC+AGG + chr3.3:58278303-58278322 MS.gene049700:intron 25.0%
!! AAATATTTCGCGTTTTCTTA+AGG - chr3.3:58277273-58277292 None:intergenic 25.0%
!! AACATGTTTTCTTTTTGTAC+AGG + chr3.3:58278894-58278913 MS.gene049700:intron 25.0%
!! TAGTATTTTCTCTTTCACTA+GGG + chr3.3:58277728-58277747 MS.gene049700:intron 25.0%
!! TCAGGTAATGATTTTACAAT+TGG + chr3.3:58278918-58278937 MS.gene049700:CDS 25.0%
!! TTAGTATTTTCTCTTTCACT+AGG + chr3.3:58277727-58277746 MS.gene049700:intron 25.0%
!!! AACATCTTTTAGCTGATTTT+GGG + chr3.3:58276594-58276613 MS.gene049700:intron 25.0%
!!! ACGTTGATGATATATACTAA+AGG + chr3.3:58276390-58276409 MS.gene049700:CDS 25.0%
!!! GAAAAAGGAAGTATTAAAGA+TGG + chr3.3:58276137-58276156 MS.gene049700:CDS 25.0%
!!! TGATTTTAGCTCGATATTAA+AGG - chr3.3:58277776-58277795 None:intergenic 25.0%
!!! TGTTTTGTTGTTTGTTGTTT+TGG + chr3.3:58276843-58276862 MS.gene049700:intron 25.0%
AAACTAGACCTTGTAAGATT+TGG - chr3.3:58277463-58277482 None:intergenic 30.0%
AAGAATTGGAGATTTCTGAT+TGG + chr3.3:58278400-58278419 MS.gene049700:CDS 30.0%
AATCAAACATGTGGTCTAAA+TGG - chr3.3:58278566-58278585 None:intergenic 30.0%
AATGGAGATGGTAAAAGAAT+TGG + chr3.3:58278386-58278405 MS.gene049700:CDS 30.0%
ACTTTCTTGTATATCTGTGT+TGG - chr3.3:58277989-58278008 None:intergenic 30.0%
AGAAAGATAGTATCATCTTC+AGG - chr3.3:58278151-58278170 None:intergenic 30.0%
AGAATTGGAGATTTCTGATT+GGG + chr3.3:58278401-58278420 MS.gene049700:CDS 30.0%
AGTATCAGTGAGAATATCAA+AGG - chr3.3:58278352-58278371 None:intergenic 30.0%
ATATTAATGCAGGTTCTGTT+AGG + chr3.3:58278313-58278332 MS.gene049700:intron 30.0%
GAACATGGACAATATAAGAA+AGG - chr3.3:58278695-58278714 None:intergenic 30.0%
GATATACAAGAAAGTGACAT+CGG + chr3.3:58277994-58278013 MS.gene049700:intron 30.0%
GTATCAGTGAGAATATCAAA+GGG - chr3.3:58278351-58278370 None:intergenic 30.0%
GTTACAAAAATGTTCACATG+AGG + chr3.3:58277197-58277216 MS.gene049700:intron 30.0%
GTTTACAAGCAATAAAGAGT+TGG + chr3.3:58277432-58277451 MS.gene049700:intron 30.0%
TAAAGGACTTGATTCAGATT+TGG + chr3.3:58276407-58276426 MS.gene049700:CDS 30.0%
TATAAGAAAGGGAGAAAAAG+GGG - chr3.3:58278683-58278702 None:intergenic 30.0%
TATATTATGCATAGGTGCAA+GGG + chr3.3:58278635-58278654 MS.gene049700:intron 30.0%
TATTCTTCCTCATACATTTC+CGG - chr3.3:58277881-58277900 None:intergenic 30.0%
TTATATTATGCATAGGTGCA+AGG + chr3.3:58278634-58278653 MS.gene049700:intron 30.0%
! ATTTTCACTAGTCCAAGATT+TGG - chr3.3:58277582-58277601 None:intergenic 30.0%
! CAAGGTCTAGTTTATTTACA+TGG + chr3.3:58277470-58277489 MS.gene049700:intron 30.0%
! GGATTAGTACATTCACTATA+TGG - chr3.3:58277968-58277987 None:intergenic 30.0%
! TGCAGAAAACTTCATGTTTT+TGG + chr3.3:58276687-58276706 MS.gene049700:intron 30.0%
! TTTTCTTTTTGTACAGGTTC+AGG + chr3.3:58278900-58278919 MS.gene049700:intron 30.0%
! TTTTGGTCTCAAAAACATCA+TGG + chr3.3:58276704-58276723 MS.gene049700:CDS 30.0%
!! AATCTTGGACTAGTGAAAAT+TGG + chr3.3:58277582-58277601 MS.gene049700:CDS 30.0%
!! ACATCTTTTAGCTGATTTTG+GGG + chr3.3:58276595-58276614 MS.gene049700:intron 30.0%
!! CAATCATTTTTCCATCTATG+TGG - chr3.3:58278477-58278496 None:intergenic 30.0%
!! GAACATCTTTTAGCTGATTT+TGG + chr3.3:58276593-58276612 MS.gene049700:intron 30.0%
!! TTATTTTGTGTTAGGAACAC+CGG + chr3.3:58277844-58277863 MS.gene049700:intron 30.0%
!!! TGTTTGTTGTTTTGGTGATA+GGG + chr3.3:58276851-58276870 MS.gene049700:intron 30.0%
!!! TTGTTTGTTGTTTTGGTGAT+AGG + chr3.3:58276850-58276869 MS.gene049700:intron 30.0%
AAAACAGAAACACAAACGAC+CGG - chr3.3:58276824-58276843 None:intergenic 35.0%
ACATCGGTAAATTCATGTTC+TGG + chr3.3:58278010-58278029 MS.gene049700:intron 35.0%
ACGTGTTAACTTCTCAAAGA+CGG + chr3.3:58276196-58276215 MS.gene049700:CDS 35.0%
ATACTCGCTTATATTTCCTC+CGG - chr3.3:58277412-58277431 None:intergenic 35.0%
CAAGTGAAGGAATCATACAT+TGG - chr3.3:58276173-58276192 None:intergenic 35.0%
CAATCAGCTCATAGTGTTAT+AGG + chr3.3:58277639-58277658 MS.gene049700:CDS 35.0%
CAATGTATGATTCCTTCACT+TGG + chr3.3:58276171-58276190 MS.gene049700:CDS 35.0%
CATCCACTCTTGAATTTGAT+GGG - chr3.3:58276485-58276504 None:intergenic 35.0%
CTTGCTGATGTTTACTCATT+TGG + chr3.3:58277908-58277927 MS.gene049700:CDS 35.0%
GTAATCATCGAAGCAGAAAA+AGG + chr3.3:58276122-58276141 MS.gene049700:CDS 35.0%
GTGATAGAGACTGGTATTAT+AGG + chr3.3:58276258-58276277 MS.gene049700:intron 35.0%
TAATGCTGCAGCTAACAAAT+TGG + chr3.3:58276451-58276470 MS.gene049700:CDS 35.0%
TTAAAGTGCATTCGTGAACA+TGG - chr3.3:58278710-58278729 None:intergenic 35.0%
TTGTGCCTCAAAGAAACAAT+GGG + chr3.3:58275998-58276017 MS.gene049700:CDS 35.0%
TTTCCACACAATCAAACATG+TGG - chr3.3:58278575-58278594 None:intergenic 35.0%
TTTGCAACATCGAAAGTCAT+TGG - chr3.3:58277679-58277698 None:intergenic 35.0%
TTTGTGCCTCAAAGAAACAA+TGG + chr3.3:58275997-58276016 MS.gene049700:CDS 35.0%
! AAATCCCCATTGTTTCTTTG+AGG - chr3.3:58276006-58276025 None:intergenic 35.0%
! CGTTTCATGAGATTTTGTTC+GGG + chr3.3:58275748-58275767 MS.gene049700:CDS 35.0%
! GATAATTTTCGAACACGTTC+AGG + chr3.3:58277384-58277403 MS.gene049700:intron 35.0%
! GCGTTTCATGAGATTTTGTT+CGG + chr3.3:58275747-58275766 MS.gene049700:CDS 35.0%
! GTTTCATGAGATTTTGTTCG+GGG + chr3.3:58275749-58275768 MS.gene049700:CDS 35.0%
! TCTAAATGGTCTTACTCACA+TGG - chr3.3:58278552-58278571 None:intergenic 35.0%
!! AATTGGTTCTGTTGATGCTT+TGG + chr3.3:58278935-58278954 MS.gene049700:CDS 35.0%
!! ATTGGTTCTGTTGATGCTTT+GGG + chr3.3:58278936-58278955 MS.gene049700:CDS 35.0%
!!! TGACTCTTTTTTAGCAGTAG+TGG + chr3.3:58278780-58278799 MS.gene049700:intron 35.0%
ACATATGTTCATAGGGACCA+TGG + chr3.3:58277538-58277557 MS.gene049700:intron 40.0%
ACTCAGAGAGATGAAGTTTG+AGG - chr3.3:58276734-58276753 None:intergenic 40.0%
AGACCACATGTTTGATTGTG+TGG + chr3.3:58278569-58278588 MS.gene049700:intron 40.0%
AGCAGCAGCTGGATATATTA+AGG + chr3.3:58276058-58276077 MS.gene049700:CDS 40.0%
ATCACCAACAGTGAAGGATT+TGG - chr3.3:58276243-58276262 None:intergenic 40.0%
ATCTCCAAATCCTTCACTGT+TGG + chr3.3:58276236-58276255 MS.gene049700:CDS 40.0%
ATCTCCATTGCAACATCAGT+GGG - chr3.3:58278375-58278394 None:intergenic 40.0%
ATGATCCACCTGTAATCCAT+AGG + chr3.3:58277495-58277514 MS.gene049700:intron 40.0%
ATTTGGAGATCAAACCAGAG+GGG - chr3.3:58276226-58276245 None:intergenic 40.0%
CCAATGCGGAAAAATGACAT+TGG - chr3.3:58278105-58278124 None:intergenic 40.0%
CTAGTCCAAGATTTGGAGAA+AGG - chr3.3:58277575-58277594 None:intergenic 40.0%
CTCATTTGGCATGTGTGTAT+TGG + chr3.3:58277922-58277941 MS.gene049700:intron 40.0%
GAAAGCCTTTCTCCAAATCT+TGG + chr3.3:58277567-58277586 MS.gene049700:CDS 40.0%
GATTTGGAGATCAAACCAGA+GGG - chr3.3:58276227-58276246 None:intergenic 40.0%
GCATCCACTCTTGAATTTGA+TGG - chr3.3:58276486-58276505 None:intergenic 40.0%
GCTGCAGCATTAAAGTTAGA+TGG - chr3.3:58276443-58276462 None:intergenic 40.0%
GTATCATCTTTAGGTCCCTA+TGG - chr3.3:58277514-58277533 None:intergenic 40.0%
GTGAAGGAATCATACATTGG+AGG - chr3.3:58276170-58276189 None:intergenic 40.0%
GTTCCCATCAAATTCAAGAG+TGG + chr3.3:58276479-58276498 MS.gene049700:CDS 40.0%
TACTTGGAATAGAGGTAGCA+TGG + chr3.3:58277024-58277043 MS.gene049700:intron 40.0%
TATGAGCTGATTGAGAACCT+TGG - chr3.3:58277632-58277651 None:intergenic 40.0%
TCAATTGGAGATATCTGCCT+TGG + chr3.3:58278521-58278540 MS.gene049700:CDS 40.0%
TCATGCGATTCTACACATCT+TGG + chr3.3:58277144-58277163 MS.gene049700:intron 40.0%
TCTGTTTCAGTAAGCAACCA+CGG + chr3.3:58275972-58275991 MS.gene049700:intron 40.0%
TGATCCACCTGTAATCCATA+GGG + chr3.3:58277496-58277515 MS.gene049700:intron 40.0%
TGGCAAGGAGGAAAAATTGA+AGG + chr3.3:58278974-58278993 MS.gene049700:CDS 40.0%
TGTGCCTCAAAGAAACAATG+GGG + chr3.3:58275999-58276018 MS.gene049700:CDS 40.0%
! CATTTTTCCGCATTGGAGAA+AGG + chr3.3:58278109-58278128 MS.gene049700:CDS 40.0%
! CTAGTGAAAATTGGTGACCT+TGG + chr3.3:58277591-58277610 MS.gene049700:CDS 40.0%
! CTGCACTTTTACCACATAGA+TGG + chr3.3:58278463-58278482 MS.gene049700:CDS 40.0%
! TATGGATTACAGGTGGATCA+TGG - chr3.3:58277496-58277515 None:intergenic 40.0%
! TTTAGGTCCCTATGGATTAC+AGG - chr3.3:58277506-58277525 None:intergenic 40.0%
!!! CCAATGTCATTTTTCCGCAT+TGG + chr3.3:58278102-58278121 MS.gene049700:CDS 40.0%
ATCTCATGAAACGCTGCAGA+AGG - chr3.3:58275741-58275760 None:intergenic 45.0%
CAATAGCGAGGTTATTGGCA+AGG + chr3.3:58278959-58278978 MS.gene049700:CDS 45.0%
CACTGATGTTGCAATGGAGA+TGG + chr3.3:58278374-58278393 MS.gene049700:CDS 45.0%
CATCTCCATTGCAACATCAG+TGG - chr3.3:58278376-58278395 None:intergenic 45.0%
CGATCTGGAGACACAAACAA+CGG - chr3.3:58276801-58276820 None:intergenic 45.0%
GAAAGGCTTTCCTATGACCA+TGG - chr3.3:58277558-58277577 None:intergenic 45.0%
GGATTTGGAGATCAAACCAG+AGG - chr3.3:58276228-58276247 None:intergenic 45.0%
GTCTCTATCACCAACAGTGA+AGG - chr3.3:58276249-58276268 None:intergenic 45.0%
GTGGTTACAATCTGGATCTG+CGG + chr3.3:58275796-58275815 MS.gene049700:CDS 45.0%
GTTAACACGTCTCCAAGTGA+AGG - chr3.3:58276186-58276205 None:intergenic 45.0%
TACCACAACCATCAGAGAAG+AGG - chr3.3:58275683-58275702 None:intergenic 45.0%
TACTCCCACTGATGTTGCAA+TGG + chr3.3:58278368-58278387 MS.gene049700:CDS 45.0%
TCCTATGCCTTTCTCCAATG+CGG - chr3.3:58278119-58278138 None:intergenic 45.0%
TGGTTACAATCTGGATCTGC+GGG + chr3.3:58275797-58275816 MS.gene049700:CDS 45.0%
TGTAGAATCGCATGATCGAC+CGG - chr3.3:58277139-58277158 None:intergenic 45.0%
TTCATAGGGACCATGGTCAT+AGG + chr3.3:58277545-58277564 MS.gene049700:intron 45.0%
TTCTCTGATGGTTGTGGTAC+TGG + chr3.3:58275684-58275703 MS.gene049700:CDS 45.0%
TTGGGCAATAGCGAGGTTAT+TGG + chr3.3:58278954-58278973 MS.gene049700:CDS 45.0%
TTTCGAACACGTTCAGGTAC+CGG + chr3.3:58277390-58277409 MS.gene049700:intron 45.0%
! TCATGAGATTTTGTTCGGGG+TGG + chr3.3:58275752-58275771 MS.gene049700:CDS 45.0%
!! TCACTGTTGGTGATAGAGAC+TGG + chr3.3:58276249-58276268 MS.gene049700:CDS 45.0%
!! TCTTTGAGGCACAAAATCCG+TGG - chr3.3:58275992-58276011 None:intergenic 45.0%
!!! GATCTAGCTTTTGGGTTGGT+GGG + chr3.3:58275774-58275793 MS.gene049700:CDS 45.0%
ACCATCTCGTTTCCGTTCGT+CGG + chr3.3:58276767-58276786 MS.gene049700:intron 50.0%
ACCCTCTTCTCTCTTTCTGG+CGG + chr3.3:58275648-58275667 MS.gene049700:CDS 50.0%
ACCGCCAGAAAGAGAGAAGA+GGG - chr3.3:58275652-58275671 None:intergenic 50.0%
AGCCTCTTCTCTGATGGTTG+TGG + chr3.3:58275678-58275697 MS.gene049700:CDS 50.0%
ATGAAACGCTGCAGAAGGAG+AGG - chr3.3:58275736-58275755 None:intergenic 50.0%
CAACCATCAGAGAAGAGGCT+CGG - chr3.3:58275678-58275697 None:intergenic 50.0%
CGATTTGCAGCGCCTTTACT+CGG + chr3.3:58277085-58277104 MS.gene049700:intron 50.0%
GAAAGAGAGAAGAGGGTCGA+CGG - chr3.3:58275645-58275664 None:intergenic 50.0%
GAACCAAGTCAGACTCAACG+AGG + chr3.3:58277046-58277065 MS.gene049700:intron 50.0%
GGACGACGCTATAACCATGA+AGG + chr3.3:58276079-58276098 MS.gene049700:CDS 50.0%
GGAGAATTGCAGCTAGTCCA+AGG - chr3.3:58277611-58277630 None:intergenic 50.0%
GGAGATGAACCTCCGAGTAA+AGG - chr3.3:58277100-58277119 None:intergenic 50.0%
GGCTGACAAGTGTGTGAGAA+TGG + chr3.3:58278801-58278820 MS.gene049700:intron 50.0%
GTACCTCGTTGAGTCTGACT+TGG - chr3.3:58277052-58277071 None:intergenic 50.0%
GTTAGGAACACCGGAGTTCA+TGG + chr3.3:58277853-58277872 MS.gene049700:intron 50.0%
TAGCGAGGTTATTGGCAAGG+AGG + chr3.3:58278962-58278981 MS.gene049700:CDS 50.0%
TCCTAAGCACACTCAAGCAC+CGG + chr3.3:58277117-58277136 MS.gene049700:intron 50.0%
TCGACCCTCTTCTCTCTTTC+TGG + chr3.3:58275645-58275664 MS.gene049700:CDS 50.0%
TGGAGATATCTGCCTTGGAC+TGG + chr3.3:58278526-58278545 MS.gene049700:CDS 50.0%
TGTTTGTGTCTCCAGATCGC+CGG + chr3.3:58276802-58276821 MS.gene049700:intron 50.0%
TTACTCACATGGCCAGTCCA+AGG - chr3.3:58278541-58278560 None:intergenic 50.0%
! AGGTCCCTATGGATTACAGG+TGG - chr3.3:58277503-58277522 None:intergenic 50.0%
! ATCTGCGGGACTCTGTTTTG+TGG + chr3.3:58275811-58275830 MS.gene049700:CDS 50.0%
! CATGGCACCGGAAATGTATG+AGG + chr3.3:58277871-58277890 MS.gene049700:CDS 50.0%
! GTTGGTGGGTGGTTACAATC+TGG + chr3.3:58275788-58275807 MS.gene049700:CDS 50.0%
! TCCGCATTGGAGAAAGGCAT+AGG + chr3.3:58278115-58278134 MS.gene049700:CDS 50.0%
! TGATGCTTTGGGCAATAGCG+AGG + chr3.3:58278947-58278966 MS.gene049700:CDS 50.0%
! TGCAGAAGGAGAGGCTAGTT+CGG - chr3.3:58275727-58275746 None:intergenic 50.0%
!! ATTTCCGGTGCCATGAACTC+CGG - chr3.3:58277866-58277885 None:intergenic 50.0%
!! GGACTAGCTGCAATTCTCCA+AGG + chr3.3:58277612-58277631 MS.gene049700:CDS 50.0%
!! TAAAGGCGCTGCAAATCGTC+TGG - chr3.3:58277083-58277102 None:intergenic 50.0%
!! TGGTTGTGGTACTGGTTTCG+CGG + chr3.3:58275692-58275711 MS.gene049700:CDS 50.0%
!!! GGATCTAGCTTTTGGGTTGG+TGG + chr3.3:58275773-58275792 MS.gene049700:CDS 50.0%
!!! GGTGGATCTAGCTTTTGGGT+TGG + chr3.3:58275770-58275789 MS.gene049700:CDS 50.0%
!!! TCGGGGTGGATCTAGCTTTT+GGG + chr3.3:58275766-58275785 MS.gene049700:CDS 50.0%
!!! TTCGGGGTGGATCTAGCTTT+TGG + chr3.3:58275765-58275784 MS.gene049700:CDS 50.0%
AACACAAACGACCGGCGATC+TGG - chr3.3:58276816-58276835 None:intergenic 55.0%
AACACCGGAGTTCATGGCAC+CGG + chr3.3:58277859-58277878 MS.gene049700:CDS 55.0%
ACCGGTGCTTGAGTGTGCTT+AGG - chr3.3:58277121-58277140 None:intergenic 55.0%
ACGGAAACGAGATGGTGAGG+AGG - chr3.3:58276763-58276782 None:intergenic 55.0%
CATCCGAGCCTCTTCTCTGA+TGG + chr3.3:58275672-58275691 MS.gene049700:CDS 55.0%
CGAACGGAAACGAGATGGTG+AGG - chr3.3:58276766-58276785 None:intergenic 55.0%
CGACGAAGAGGAGAAACGCT+CGG - chr3.3:58275861-58275880 None:intergenic 55.0%
CGAGCGTTTCTCCTCTTCGT+CGG + chr3.3:58275859-58275878 MS.gene049700:CDS 55.0%
CGGAAACGAGATGGTGAGGA+GGG - chr3.3:58276762-58276781 None:intergenic 55.0%
CGTTTCTCCTCTTCGTCGGT+GGG + chr3.3:58275863-58275882 MS.gene049700:CDS 55.0%
GAACTCGATGAAGCAGCAGC+TGG + chr3.3:58276047-58276066 MS.gene049700:CDS 55.0%
GACCGCCAGAAAGAGAGAAG+AGG - chr3.3:58275653-58275672 None:intergenic 55.0%
TCAAAGACGGATCACCCCTC+TGG + chr3.3:58276209-58276228 MS.gene049700:CDS 55.0%
TGGGCGCGCCAAATCTTACA+AGG + chr3.3:58277452-58277471 MS.gene049700:intron 55.0%
TTTGCAGCGCCTTTACTCGG+AGG + chr3.3:58277088-58277107 MS.gene049700:intron 55.0%
!! GGTTGTGGTACTGGTTTCGC+GGG + chr3.3:58275693-58275712 MS.gene049700:CDS 55.0%
!!! CTAGCTTTTGGGTTGGTGGG+TGG + chr3.3:58275777-58275796 MS.gene049700:CDS 55.0%
AGAGAGAAGAGGGTCGACGG+TGG - chr3.3:58275642-58275661 None:intergenic 60.0%
GCCGACGAACGGAAACGAGA+TGG - chr3.3:58276771-58276790 None:intergenic 60.0%
GCGTTTCTCCTCTTCGTCGG+TGG + chr3.3:58275862-58275881 MS.gene049700:CDS 60.0%
TCTCCTCTTCGTCGGTGGGT+TGG + chr3.3:58275867-58275886 MS.gene049700:CDS 60.0%
! CTCCTCTTCGTCGGTGGGTT+GGG + chr3.3:58275868-58275887 MS.gene049700:CDS 60.0%
!! ACGGTGTTGCTGCCGACGAA+CGG - chr3.3:58276782-58276801 None:intergenic 60.0%
!! CGAACACGTTCAGGTACCGG+AGG + chr3.3:58277393-58277412 MS.gene049700:intron 60.0%
!! TCCTCTTCGTCGGTGGGTTG+GGG + chr3.3:58275869-58275888 MS.gene049700:CDS 60.0%
AGCCTTCAACGGCGGTGGTG+CGG + chr3.3:58275598-58275617 MS.gene049700:CDS 65.0%
GAAGAGGGTCGACGGTGGTG+CGG - chr3.3:58275637-58275656 None:intergenic 65.0%
!! CCTCTTCGTCGGTGGGTTGG+GGG + chr3.3:58275870-58275889 MS.gene049700:CDS 65.0%
CCCCCAACCCACCGACGAAG+AGG - chr3.3:58275873-58275892 None:intergenic 70.0%
CGCCGCACCACCGCCGTTGA+AGG - chr3.3:58275603-58275622 None:intergenic 75.0%
GAGGGTCGACGGTGGTGCGG+AGG - chr3.3:58275634-58275653 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 58275594 58279016 58275594 ID=MS.gene049700
chr3.3 mRNA 58275594 58279016 58275594 ID=MS.gene049700.t1;Parent=MS.gene049700
chr3.3 exon 58275594 58275891 58275594 ID=MS.gene049700.t1.exon1;Parent=MS.gene049700.t1
chr3.3 CDS 58275594 58275891 58275594 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58275982 58276270 58275982 ID=MS.gene049700.t1.exon2;Parent=MS.gene049700.t1
chr3.3 CDS 58275982 58276270 58275982 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58276389 58276561 58276389 ID=MS.gene049700.t1.exon3;Parent=MS.gene049700.t1
chr3.3 CDS 58276389 58276561 58276389 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58276692 58276780 58276692 ID=MS.gene049700.t1.exon4;Parent=MS.gene049700.t1
chr3.3 CDS 58276692 58276780 58276692 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58277567 58277660 58277567 ID=MS.gene049700.t1.exon5;Parent=MS.gene049700.t1
chr3.3 CDS 58277567 58277660 58277567 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58277858 58277933 58277858 ID=MS.gene049700.t1.exon6;Parent=MS.gene049700.t1
chr3.3 CDS 58277858 58277933 58277858 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58278093 58278196 58278093 ID=MS.gene049700.t1.exon7;Parent=MS.gene049700.t1
chr3.3 CDS 58278093 58278196 58278093 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58278325 58278552 58278325 ID=MS.gene049700.t1.exon8;Parent=MS.gene049700.t1
chr3.3 CDS 58278325 58278552 58278325 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
chr3.3 exon 58278916 58279016 58278916 ID=MS.gene049700.t1.exon9;Parent=MS.gene049700.t1
chr3.3 CDS 58278916 58279016 58278916 ID=cds.MS.gene049700.t1;Parent=MS.gene049700.t1
Gene Sequence

>MS.gene049700

ATGCAGCCTTCAACGGCGGTGGTGCGGCGAGCTTCAACCTCCGCACCACCGTCGACCCTCTTCTCTCTTTCTGGCGGTCATCCGAGCCTCTTCTCTGATGGTTGTGGTACTGGTTTCGCGGGTTCAGTTTCCGAACTAGCCTCTCCTTCTGCAGCGTTTCATGAGATTTTGTTCGGGGTGGATCTAGCTTTTGGGTTGGTGGGTGGTTACAATCTGGATCTGCGGGACTCTGTTTTGTGGTTACAATCTTGTTCTGCAGCGTTTCCGAGCGTTTCTCCTCTTCGTCGGTGGGTTGGGGGTCGATACTGTGTTTTCGTTCAAGATTTATAATATGGATTTTTGTCTAAAAAGTTTTTGTTAAGCTGTATATATATTTTTTCTGTTTCAGTAAGCAACCACGGATTTTGTGCCTCAAAGAAACAATGGGGATTTTCAAATTTCATATCTCTAAGTGAACTCGATGAAGCAGCAGCTGGATATATTAAGGACGACGCTATAACCATGAAGGTTGAAATATTTAAGATGGATGTAATCATCGAAGCAGAAAAAGGAAGTATTAAAGATGGTGCTATGCCTCCAATGTATGATTCCTTCACTTGGAGACGTGTTAACTTCTCAAAGACGGATCACCCCTCTGGTTTGATCTCCAAATCCTTCACTGTTGGTGATAGAGACTGGTATTATAGGAGTATTATATATATCTAACAAATTCTTAATTAATTGGTTTATTTAGTAATTGTTTTTATAATTAAAAGTTAATTAATTTTGTGCATGTAATTTATTATATATATGTAGGACGTTGATGATATATACTAAAGGACTTGATTCAGATTTGGTCTTAGACAACCATCTAACTTTAATGCTGCAGCTAACAAATTGGAATAAGTTCCCATCAAATTCAAGAGTGGATGCAAGTTTCAAGTTTAAAATTTTAGACCAGCATCATAAAAAATATTATGAGAAAACAGGTACAAATGTTTATCAATGCTTCTTATTTTTGAACATCTTTTAGCTGATTTTGGGGTTATGAGAATTATAGTATGATTTATTTTTTGATTAAAAGCTTATTCTAAGTTGTGTTTTTCTTTTCTACTGCAGAAAACTTCATGTTTTTGGTCTCAAAAACATCATGGTCATCCTCAAACTTCATCTCTCTGAGTGAACTCCCTCCTCACCATCTCGTTTCCGTTCGTCGGCAGCAACACCGTTGTTTGTGTCTCCAGATCGCCGGTCGTTTGTGTTTCTGTTTTGTTTTGTTGTTTGTTGTTTTGGTGATAGGGTTTTGATTATGTTAATTGAATTAATTTGATGCATGTGTTTTATAAATATTGAATCTAGAACTATTATTTATATTAGTAGTCAGCAATCTCATAATAGTAAAAACATTGTATATACATCTTGTTAATTGTTAAAAAGTTATTAATTTGAATTACTTGGAATAGAGGTAGCATGGAACCAAGTCAGACTCAACGAGGTACTAAACACGCCAGACGATTTGCAGCGCCTTTACTCGGAGGTTCATCTCCTAAGCACACTCAAGCACCGGTCGATCATGCGATTCTACACATCTTGGATTGATATTGATAACAAGAACTTCAACTTTGTTACAAAAATGTTCACATGAGGCTCACTGAGAGAGTAATTTTCTTTCTATATATGAAATTTCATGACACGCACCTTAAGAAAACGCGAAATATTTCATTTCTGTTATGCTTATATGAATGTGATCATCGATAACTAAAATGTGAGAATATTACTTTCTGTCTTGTTGCCTCTTTGATGAAATAATTGATAATTTTCGAACACGTTCAGGTACCGGAGGAAATATAAGCGAGTATGTTTACAAGCAATAAAGAGTTGGGCGCGCCAAATCTTACAAGGTCTAGTTTATTTACATGGCCATGATCCACCTGTAATCCATAGGGACCTAAAGATGATACTATCACATATGTTCATAGGGACCATGGTCATAGGAAAGCCTTTCTCCAAATCTTGGACTAGTGAAAATTGGTGACCTTGGACTAGCTGCAATTCTCCAAGGTTCTCAATCAGCTCATAGTGTTATAGGTACTTACATTTCAGCCAATGACTTTCGATGTTGCAAACTAAACATCAGTATATTAGTTGTTATTGTTAGTATTTTCTCTTTCACTAGGGTTTGAAATCCGATCATTGAACTCCTTTAATATCGAGCTAAAATCAGTTAAGCTACACTGCTATTATATTTATATATTTTGAATCAAAAATTTCTTATTTTGTGTTAGGAACACCGGAGTTCATGGCACCGGAAATGTATGAGGAAGAATACAATGAACTTGCTGATGTTTACTCATTTGGCATGTGTGTATTGGAAATGCTCACATCTGATTATCCATATAGTGAATGTACTAATCCAACACAGATATACAAGAAAGTGACATCGGTAAATTCATGTTCTGGTTTAGATCTCATGATATCAGTAAAATTTCATGTTTTATTAAGTAACATTTTATGTTTTAGGGGAAGCTACCAATGTCATTTTTCCGCATTGGAGAAAGGCATAGGAAAGTTGAATCCTGAAGATGATACTATCTTTCTCAAAGTACAAATTTCTGATAAGAAATGTATGTATTCTTTTTTCAGTGCACATGAAATGAATTTGACTATGATACATATATATACTTTATGTTTTCTAAATGAATTTTAGTATTTAATTTTACCTAACAATATTTTCTTCTTCATATTAATGCAGGTTCTGTTAGGAATGTATATTTTCCCTTTGATATTCTCACTGATACTCCCACTGATGTTGCAATGGAGATGGTAAAAGAATTGGAGATTTCTGATTGGGATCCTTTTGATATTGCAAATATGATCAATAGAGAGATATCTGCACTTTTACCACATAGATGGAAAAATGATTGCTCAGACCACATGTTCAAATATGATCAATTGGAGATATCTGCCTTGGACTGGCCATGTGAGTAAGACCATTTAGACCACATGTTTGATTGTGTGGAAAGTTCATAATTCATTTGCATTTAGATGGCATAGTGTGTTCTTATATTATGCATAGGTGCAAGGGATTCACTGTGATTGTTTGAAATCCCCTTTTTCTCCCTTTCTTATATTGTCCATGTTCACGAATGCACTTTAAGTATCAGTTAGTTAGGTTATGTTAAGTGTTAATTTTACTTGAATGTGAAATGACTCTTTTTTAGCAGTAGTGGCTGACAAGTGTGTGAGAATGGCGACAGATGAGCTGAATTTATAGATTAGACGCATCAATTGTTCTACTCACAAAATATAAGTAGAATCTAAAACATGTTTTCTTTTTGTACAGGTTCAGGTAATGATTTTACAATTGGTTCTGTTGATGCTTTGGGCAATAGCGAGGTTATTGGCAAGGAGGAAAAATTGAAGGTTGTTGATAACAAATTCTAG
Protein sequence

>MS.gene049700.t1

MQPSTAVVRRASTSAPPSTLFSLSGGHPSLFSDGCGTGFAGSVSELASPSAAFHEILFGVDLAFGLVGGYNLDLRDSVLWLQSCSAAFPSVSPLRRWVGVSNHGFCASKKQWGFSNFISLSELDEAAAGYIKDDAITMKVEIFKMDVIIEAEKGSIKDGAMPPMYDSFTWRRVNFSKTDHPSGLISKSFTVGDRDWTLMIYTKGLDSDLVLDNHLTLMLQLTNWNKFPSNSRVDASFKFKILDQHHKKYYEKTENFMFLVSKTSWSSSNFISLSELPPHHLVSESLSPNLGLVKIGDLGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELADVYSFGMGSYQCHFSALEKGIGKLNPEDDTIFLKVQISDKKCSVRNVYFPFDILTDTPTDVAMEMVKELEISDWDPFDIANMINREISALLPHRWKNDCSDHMFKYDQLEISALDWPCSGNDFTIGSVDALGNSEVIGKEEKLKVVDNKF