AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049714

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049714.t1 MTR_3g064840 97.196 428 3 5 1 423 1 424 0.0 827
MS.gene049714.t1 MTR_8g066310 59.333 150 42 4 257 395 157 298 3.21e-49 171
MS.gene049714.t1 MTR_5g029470 62.821 156 40 5 255 400 201 348 2.62e-48 170
MS.gene049714.t1 MTR_6g071625 35.806 391 167 12 18 402 7 319 3.26e-45 160
MS.gene049714.t1 MTR_1g021520 58.268 127 49 1 267 393 120 242 3.55e-39 142
MS.gene049714.t1 MTR_7g069660 64.179 67 23 1 266 332 65 130 2.69e-21 94.7
MS.gene049714.t1 MTR_0223s0040 65.517 58 20 0 272 329 17 74 1.38e-20 91.7
MS.gene049714.t1 MTR_1g112370 63.793 58 21 0 272 329 21 78 5.36e-20 90.9
MS.gene049714.t1 MTR_2g084230 65.574 61 21 0 272 332 96 156 9.63e-20 89.7
MS.gene049714.t1 MTR_2g023580 67.241 58 19 0 272 329 54 111 1.27e-19 87.8
MS.gene049714.t1 MTR_1g080330 43.860 114 48 3 253 352 143 254 1.41e-19 89.0
MS.gene049714.t1 MTR_2g084230 68.966 58 18 0 272 329 96 153 1.61e-19 90.1
MS.gene049714.t1 MTR_1g080330 43.860 114 48 3 253 352 143 254 2.51e-19 89.7
MS.gene049714.t1 MTR_8g086410 67.241 58 19 0 272 329 108 165 6.18e-19 89.0
MS.gene049714.t1 MTR_8g086410 67.241 58 19 0 272 329 110 167 6.20e-19 89.0
MS.gene049714.t1 MTR_7g093030 48.837 86 41 2 275 359 214 297 2.90e-18 86.3
MS.gene049714.t1 MTR_7g093030 51.250 80 36 2 275 353 214 291 3.76e-18 84.7
MS.gene049714.t1 MTR_7g098250 50.000 86 43 0 274 359 263 348 4.53e-18 86.7
MS.gene049714.t1 MTR_2g016220 62.295 61 23 0 272 332 88 148 1.07e-17 84.7
MS.gene049714.t1 MTR_2g016220 62.295 61 23 0 272 332 88 148 1.16e-17 84.3
MS.gene049714.t1 MTR_8g086410 64.286 56 20 0 272 327 110 165 4.72e-17 83.2
MS.gene049714.t1 MTR_7g115530 54.930 71 30 1 274 344 219 287 6.12e-17 82.0
MS.gene049714.t1 MTR_7g115530 64.286 56 20 0 274 329 219 274 1.03e-16 80.9
MS.gene049714.t1 MTR_3g450310 58.929 56 23 0 274 329 20 75 1.05e-16 79.0
MS.gene049714.t1 MTR_7g115530 64.286 56 20 0 274 329 219 274 2.11e-16 80.1
MS.gene049714.t1 MTR_5g027440 67.925 53 17 0 274 326 26 78 2.35e-16 79.3
MS.gene049714.t1 MTR_7g115530 64.286 56 20 0 274 329 219 274 2.74e-16 80.9
MS.gene049714.t1 MTR_1g053835 57.377 61 26 0 275 335 260 320 2.84e-16 80.9
MS.gene049714.t1 MTR_2g016220 58.462 65 23 1 272 332 88 152 8.97e-16 79.0
MS.gene049714.t1 MTR_1g090670 54.930 71 31 1 274 344 45 114 1.21e-15 77.4
MS.gene049714.t1 MTR_2g027800 54.286 70 31 1 274 343 40 108 1.24e-15 77.8
MS.gene049714.t1 MTR_7g088070 63.636 55 20 0 275 329 52 106 1.51e-15 77.0
MS.gene049714.t1 MTR_7g088070 63.636 55 20 0 275 329 52 106 1.55e-15 77.0
MS.gene049714.t1 MTR_2g027860 63.636 55 20 0 275 329 51 105 4.44e-15 76.3
MS.gene049714.t1 MTR_6g444980 51.429 70 34 0 274 343 36 105 4.46e-15 76.6
MS.gene049714.t1 MTR_6g444980 51.429 70 34 0 274 343 36 105 5.46e-15 76.6
MS.gene049714.t1 MTR_2g086450 58.929 56 23 0 274 329 46 101 8.18e-15 75.9
MS.gene049714.t1 MTR_2g027800 62.264 53 20 0 274 326 40 92 1.99e-14 73.9
MS.gene049714.t1 MTR_7g115530 60.000 55 22 0 274 328 219 273 2.16e-14 73.9
MS.gene049714.t1 MTR_7g115530 66.000 50 17 0 274 323 219 268 3.05e-14 73.2
MS.gene049714.t1 MTR_6g032990 54.237 59 27 0 274 332 43 101 4.04e-14 73.9
MS.gene049714.t1 MTR_5g041350 52.632 57 27 0 274 330 16 72 5.25e-14 73.2
MS.gene049714.t1 MTR_4g081710 54.386 57 26 0 274 330 18 74 1.41e-13 72.0
MS.gene049714.t1 MTR_1g053830 49.180 61 31 0 275 335 20 80 3.57e-13 65.9
MS.gene049714.t1 MTR_1g053800 37.615 109 52 3 275 367 179 287 7.44e-13 69.3
MS.gene049714.t1 MTR_7g068600 43.373 83 44 1 275 354 15 97 1.98e-12 67.0
MS.gene049714.t1 MTR_4g113140 48.529 68 35 0 272 339 234 301 1.43e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049714.t1 AT5G16560 41.647 425 150 15 1 404 1 348 1.72e-71 231
MS.gene049714.t1 AT1G32240 57.225 173 48 5 223 389 174 326 4.18e-50 174
MS.gene049714.t1 AT1G32240 57.225 173 48 5 223 389 174 326 8.97e-50 173
MS.gene049714.t1 AT4G17695 36.042 283 112 8 113 387 62 283 1.07e-38 142
MS.gene049714.t1 AT5G42630 72.727 88 24 0 268 355 100 187 1.09e-36 134
MS.gene049714.t1 AT5G42630 72.727 88 24 0 268 355 100 187 3.85e-36 134
MS.gene049714.t1 AT2G38300 38.255 149 79 4 272 417 53 191 5.33e-21 94.0
MS.gene049714.t1 AT4G04605 67.241 58 19 0 272 329 13 70 2.96e-20 89.4
MS.gene049714.t1 AT2G02060 65.625 64 20 1 273 334 29 92 7.81e-20 89.0
MS.gene049714.t1 AT2G02060 65.625 64 20 1 273 334 29 92 7.81e-20 89.0
MS.gene049714.t1 AT1G14600 66.102 59 20 0 273 331 23 81 1.53e-19 88.2
MS.gene049714.t1 AT2G40260 35.519 183 89 5 235 415 62 217 4.17e-19 89.4
MS.gene049714.t1 AT4G04580 59.322 59 24 0 274 332 15 73 2.53e-18 82.4
MS.gene049714.t1 AT2G42660 66.071 56 19 0 274 329 51 106 1.05e-17 82.8
MS.gene049714.t1 AT5G45580 54.430 79 26 2 248 326 8 76 1.49e-17 82.8
MS.gene049714.t1 AT4G04555 58.621 58 24 0 272 329 13 70 2.24e-17 77.8
MS.gene049714.t1 AT5G45580 67.925 53 17 0 274 326 8 60 3.28e-17 81.6
MS.gene049714.t1 AT4G28610 58.730 63 26 0 275 337 227 289 4.97e-16 80.1
MS.gene049714.t1 AT2G01060 63.636 55 20 0 275 329 17 71 2.60e-15 76.3
MS.gene049714.t1 AT3G12730 60.714 56 22 0 274 329 24 79 2.63e-15 75.5
MS.gene049714.t1 AT1G32240 54.651 86 28 3 308 389 1 79 2.92e-15 72.8
MS.gene049714.t1 AT3G04450 55.714 70 30 1 261 329 225 294 4.49e-15 76.3
MS.gene049714.t1 AT5G29000 55.385 65 29 0 275 339 233 297 5.82e-15 75.9
MS.gene049714.t1 AT4G13640 62.264 53 20 0 274 326 38 90 6.38e-15 75.5
MS.gene049714.t1 AT4G13640 62.264 53 20 0 274 326 38 90 6.42e-15 75.5
MS.gene049714.t1 AT1G79430 50.704 71 35 0 274 344 35 105 7.99e-15 75.9
MS.gene049714.t1 AT5G29000 63.636 55 20 0 275 329 190 244 8.21e-15 75.9
MS.gene049714.t1 AT5G29000 63.636 55 20 0 275 329 190 244 8.21e-15 75.9
MS.gene049714.t1 AT3G24120 55.000 60 27 0 274 333 42 101 1.00e-14 74.7
MS.gene049714.t1 AT3G04450 55.714 70 30 1 261 329 225 294 1.03e-14 76.3
MS.gene049714.t1 AT5G29000 63.636 55 20 0 275 329 233 287 1.04e-14 75.9
MS.gene049714.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.09e-14 75.9
MS.gene049714.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.09e-14 75.9
MS.gene049714.t1 AT3G04450 55.714 70 30 1 261 329 185 254 1.09e-14 75.9
MS.gene049714.t1 AT3G04450 55.714 70 30 1 261 329 185 254 1.09e-14 75.9
MS.gene049714.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.11e-14 75.9
MS.gene049714.t1 AT3G24120 55.000 60 27 0 274 333 42 101 1.12e-14 74.7
MS.gene049714.t1 AT5G06800 56.364 55 24 0 275 329 194 248 1.20e-14 74.3
MS.gene049714.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.22e-14 75.9
MS.gene049714.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.22e-14 75.9
MS.gene049714.t1 AT5G06800 40.698 86 48 2 275 359 194 277 2.40e-14 74.7
MS.gene049714.t1 AT3G04030 49.231 65 33 0 274 338 46 110 2.43e-14 74.7
MS.gene049714.t1 AT5G06800 37.079 89 52 1 275 359 194 282 2.50e-14 74.7
MS.gene049714.t1 AT3G04030 49.231 65 33 0 274 338 46 110 2.95e-14 74.3
MS.gene049714.t1 AT2G20400 57.812 64 27 0 275 338 233 296 4.39e-14 73.9
MS.gene049714.t1 AT2G20400 57.143 63 27 0 275 337 233 295 7.80e-14 73.2
MS.gene049714.t1 AT2G06020 47.436 78 40 1 249 326 63 139 1.57e-13 71.2
MS.gene049714.t1 AT3G13040 61.818 55 21 0 275 329 243 297 2.09e-13 72.0
MS.gene049714.t1 AT3G13040 61.818 55 21 0 275 329 243 297 2.09e-13 72.0
MS.gene049714.t1 AT3G13040 61.818 55 21 0 275 329 243 297 2.09e-13 72.0
MS.gene049714.t1 AT1G69580 50.877 57 28 0 274 330 35 91 2.23e-12 68.2
MS.gene049714.t1 AT1G69580 50.877 57 28 0 274 330 35 91 2.29e-12 68.2
MS.gene049714.t1 AT2G03500 45.652 92 44 2 267 358 227 312 3.11e-12 68.6
MS.gene049714.t1 AT3G04030 47.692 65 33 1 274 338 46 109 7.21e-12 67.0
MS.gene049714.t1 AT1G68670 43.678 87 47 1 272 358 214 298 2.07e-11 65.5
MS.gene049714.t1 AT5G58080 37.405 131 68 6 272 390 193 321 4.12e-11 65.5

Find 84 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCCATGGCTGGTAAAA+AGG 0.206571 3.3:-58481948 None:intergenic
GTACTTGTCCATCGCATTCT+TGG 0.279145 3.3:-58482301 None:intergenic
AGAATTATGAGGTTCATAAT+TGG 0.296903 3.3:-58481603 None:intergenic
CACATGAATCACATAAATTA+TGG 0.301972 3.3:+58481839 MS.gene049714:CDS
GTTCATGCCGTTGAGCTTCT+TGG 0.305023 3.3:+58482340 MS.gene049714:CDS
CATCATCATCACTCACACTA+TGG 0.323012 3.3:+58482193 MS.gene049714:CDS
GAAGGAGACGGAGTTGAATT+AGG 0.345696 3.3:-58482013 None:intergenic
CCACCATTGCTTCCAATTTG+TGG 0.346594 3.3:-58483661 None:intergenic
GGTGTTGTTGATGTTGAAAT+TGG 0.348173 3.3:-58481509 None:intergenic
ACTCATCCACCAACACTCTA+TGG 0.365181 3.3:+58483746 MS.gene049714:CDS
ATTTGATGTCCTCCTGATAT+TGG 0.366341 3.3:-58485929 None:intergenic
GACAAACCTGCAGCTTCTTC+AGG 0.367603 3.3:+58483255 MS.gene049714:CDS
GAGGATGATGTGCCACAAAT+TGG 0.387455 3.3:+58483649 MS.gene049714:CDS
TGGTGATATAAACACATCTT+TGG 0.387535 3.3:-58481986 None:intergenic
TAATCCATATCTTGCTGTAT+TGG 0.398561 3.3:-58483724 None:intergenic
TTTGGACTTGTTTGTGGCCA+TGG 0.402795 3.3:-58485866 None:intergenic
TTCCAATCACAACCAATATC+AGG 0.403005 3.3:+58485917 MS.gene049714:CDS
ATCAGGAGGACATCAAATTC+AGG 0.406345 3.3:+58485934 MS.gene049714:CDS
TCTCTTGAATGTTCCATGGC+TGG 0.423245 3.3:-58481956 None:intergenic
CTCCTGATATTGGTTGTGAT+TGG 0.426736 3.3:-58485919 None:intergenic
TAATTCTTCAAGAACAACTT+TGG 0.432310 3.3:+58481619 MS.gene049714:CDS
TAGACTGGAATCCCTTTGAT+TGG 0.435250 3.3:-58481908 None:intergenic
TAGACCAATACAGCAAGATA+TGG 0.437170 3.3:+58483720 MS.gene049714:CDS
ATCAGTTCCAATACTGACTT+TGG 0.438924 3.3:-58482703 None:intergenic
CTCTATGGAGTAATTCTTCA+AGG 0.442637 3.3:+58483761 MS.gene049714:CDS
CTGAAACCATCTATGTCGTT+TGG 0.446505 3.3:-58485884 None:intergenic
TTAGGCCTTTCAGATGGATC+TGG 0.451188 3.3:+58483625 MS.gene049714:intron
GTTATTAAACCTTGTGGCTA+CGG 0.456769 3.3:-58482131 None:intergenic
ACAAGTCCAAACGACATAGA+TGG 0.458406 3.3:+58485878 MS.gene049714:CDS
ATGTCGTTTGGACTTGTTTG+TGG 0.463624 3.3:-58485872 None:intergenic
CACTCACACTATGGGAGTGT+TGG 0.469128 3.3:+58482202 MS.gene049714:CDS
GCTCACACTGAACTATCTCT+TGG 0.484804 3.3:+58481653 MS.gene049714:CDS
GGTTGTGATTGGAAGATAGT+TGG 0.486453 3.3:-58485908 None:intergenic
AGAGGTGAAGATGACGAAGA+AGG 0.493765 3.3:-58482031 None:intergenic
ATACAATACATACCTGCAAA+TGG 0.497480 3.3:-58482762 None:intergenic
TCTATAAGCCGCAGAGCCAC+TGG 0.501461 3.3:-58482104 None:intergenic
GTTGTTCTTGAAGAATTATG+AGG 0.504302 3.3:-58481614 None:intergenic
AAAGAAGAATTAGAAGTACT+TGG 0.514145 3.3:-58481560 None:intergenic
AAAGTCAGTATTGGAACTGA+TGG 0.515750 3.3:+58482705 MS.gene049714:CDS
TTCAATGAAAATCCCTTCCA+AGG 0.520306 3.3:-58481486 None:intergenic
AGCAACACCAAAGTCAGTAT+TGG 0.520531 3.3:+58482696 MS.gene049714:CDS
AAGCATCCATGATGAGATCA+AGG 0.522822 3.3:+58482239 MS.gene049714:CDS
CTAAAGAAGATGCCCTTGGA+AGG 0.522865 3.3:+58481473 None:intergenic
CACTATGGGAGTGTTGGACT+TGG 0.532107 3.3:+58482208 MS.gene049714:CDS
AGTGAGGAAAATGAGCTTGT+TGG 0.536485 3.3:-58481751 None:intergenic
ATTACTCCATAGAGTGTTGG+TGG 0.540356 3.3:-58483752 None:intergenic
GGTTGTTGTTGATGTTGTTG+TGG 0.543246 3.3:-58481707 None:intergenic
GAAGAATTAGAAGTACTTGG+AGG 0.543694 3.3:-58481557 None:intergenic
AATGAACGGTTATGATAGAC+TGG 0.547430 3.3:-58481923 None:intergenic
ATCATCATCACTCACACTAT+GGG 0.548466 3.3:+58482194 MS.gene049714:CDS
AAGGGTTAAGACCAATCAAA+GGG 0.548805 3.3:+58481897 MS.gene049714:CDS
TGATGATGATGGTGGTGCAA+TGG 0.555394 3.3:-58482178 None:intergenic
TTATGAGGTTCATAATTGGA+TGG 0.559155 3.3:-58481599 None:intergenic
GAAGGGTTAAGACCAATCAA+AGG 0.563565 3.3:+58481896 MS.gene049714:CDS
GTTGGATTAGGCCTTTCAGA+TGG 0.563620 3.3:+58483619 MS.gene049714:intron
TAAAGAAGATGCCCTTGGAA+GGG 0.566491 3.3:+58481474 None:intergenic
CCACAAATTGGAAGCAATGG+TGG 0.568581 3.3:+58483661 MS.gene049714:CDS
GAATTACCTGAAGAAGCTGC+AGG 0.569581 3.3:-58483261 None:intergenic
AGGTTCGTTATTAAACCTTG+TGG 0.572358 3.3:-58482137 None:intergenic
GTGTCATCAACATCATCAGA+AGG 0.572682 3.3:+58481878 MS.gene049714:CDS
GGATATTGATGAGATTTGAA+AGG 0.577391 3.3:-58482157 None:intergenic
CATGCCGTTGAGCTTCTTGG+TGG 0.577864 3.3:+58482343 MS.gene049714:CDS
CGGCATGAACAAATCTAGCA+TGG 0.592401 3.3:-58482327 None:intergenic
AGAATTACTCCATAGAGTGT+TGG 0.593216 3.3:-58483755 None:intergenic
CTTATGTGAAGAGAAAGATC+AGG 0.593684 3.3:-58481533 None:intergenic
GTGCCACAAATTGGAAGCAA+TGG 0.595960 3.3:+58483658 MS.gene049714:CDS
GAAGATGACGAAGAAGGAGA+CGG 0.598612 3.3:-58482025 None:intergenic
ATTAAACCTTGTGGCTACGG+CGG 0.603335 3.3:-58482128 None:intergenic
TGAGAGCACCAAGAATGCGA+TGG 0.625062 3.3:+58482293 MS.gene049714:CDS
CCTCTCCAGATCCATCTGAA+AGG 0.630610 3.3:-58483630 None:intergenic
TTGTTGTGATGTTGAAAGTG+AGG 0.638425 3.3:-58481767 None:intergenic
TCAATGAAAATCCCTTCCAA+GGG 0.641425 3.3:-58481485 None:intergenic
ATGGCCACCAAGAAGCTCAA+CGG 0.643310 3.3:-58482347 None:intergenic
TGTCATCAACATCATCAGAA+GGG 0.646503 3.3:+58481879 MS.gene049714:CDS
ATTGGAACTGATGGATGTGA+AGG 0.646666 3.3:+58482714 MS.gene049714:CDS
TTTAAACTCCAGTGGCTCTG+CGG 0.648557 3.3:+58482096 MS.gene049714:CDS
CCTTTCAGATGGATCTGGAG+AGG 0.652978 3.3:+58483630 MS.gene049714:CDS
ATAGAGCCGCCGTAGCCACA+AGG 0.664238 3.3:+58482122 MS.gene049714:CDS
ATGTGAAGAGAAAGATCAGG+TGG 0.665926 3.3:-58481530 None:intergenic
GTGAGTGATGATGATGATGG+TGG 0.675410 3.3:-58482186 None:intergenic
ACGGAGTTGAATTAGGCATG+TGG 0.690652 3.3:-58482006 None:intergenic
CAATCACAACCAATATCAGG+AGG 0.694629 3.3:+58485920 MS.gene049714:CDS
AGTGTGAGTGATGATGATGA+TGG 0.709391 3.3:-58482189 None:intergenic
TGATCAGTAGTAGAGAACCA+TGG 0.715843 3.3:+58485849 MS.gene049714:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAATAAATTTATTTT+TGG + chr3.3:58483578-58483597 MS.gene049714:intron 0.0%
!! ATATATAAAAAATTTAAGCA+AGG - chr3.3:58483518-58483537 None:intergenic 10.0%
!! CTTCAAATTAATTAAAATTT+AGG - chr3.3:58484952-58484971 None:intergenic 10.0%
!!! AATATTATTTTTCCAATAAT+TGG - chr3.3:58485614-58485633 None:intergenic 10.0%
!!! TTTTCTTCTTTTAAATTTTT+TGG + chr3.3:58482400-58482419 MS.gene049714:intron 10.0%
!!! TTTTTATATATATGTTTAAG+AGG - chr3.3:58483481-58483500 None:intergenic 10.0%
!!! TTTTTTATGAAGAATAAAAA+GGG + chr3.3:58483962-58483981 MS.gene049714:intron 10.0%
!! AAAAAAATGTGAAAAGAATA+AGG - chr3.3:58483400-58483419 None:intergenic 15.0%
!! AAATATCTTGATTACTATAA+AGG - chr3.3:58485134-58485153 None:intergenic 15.0%
!! AATAAATTGTTAATGTTACT+TGG - chr3.3:58484390-58484409 None:intergenic 15.0%
!! AGTAATTATAAATTAACTGT+TGG + chr3.3:58483601-58483620 MS.gene049714:intron 15.0%
!! ATATCTTATTCAATACAAAT+AGG + chr3.3:58483097-58483116 MS.gene049714:intron 15.0%
!! ATATGAAATTGAAATGAAAT+TGG + chr3.3:58482798-58482817 MS.gene049714:intron 15.0%
!! GTAACATATAAATTTAGAAA+TGG + chr3.3:58484593-58484612 MS.gene049714:intron 15.0%
!! GTAATTATTAGACTAATTAA+GGG - chr3.3:58483315-58483334 None:intergenic 15.0%
!! TATCAAAAACAAAATAAAGA+AGG - chr3.3:58484986-58485005 None:intergenic 15.0%
!! TATGAAATTGAAATGAAATT+GGG + chr3.3:58482799-58482818 MS.gene049714:intron 15.0%
!! TGAAAAAAGTTTATAAATTC+TGG + chr3.3:58485658-58485677 MS.gene049714:intron 15.0%
!! TTAAAAGAAGAAAATTAAAG+TGG - chr3.3:58482394-58482413 None:intergenic 15.0%
!!! AAGATATTTTAAAAATTGAG+AGG + chr3.3:58485145-58485164 MS.gene049714:intron 15.0%
!!! AAGTGAAAATTTTAGTAAAA+GGG - chr3.3:58484755-58484774 None:intergenic 15.0%
!!! ATTTGGGTTTTTTTTTTTTT+TGG - chr3.3:58484326-58484345 None:intergenic 15.0%
!!! CTTAATTAGTCTAATAATTA+CGG + chr3.3:58483314-58483333 MS.gene049714:intron 15.0%
!!! CTTTTTTATGAAGAATAAAA+AGG + chr3.3:58483961-58483980 MS.gene049714:intron 15.0%
!!! TAAGTGAAAATTTTAGTAAA+AGG - chr3.3:58484756-58484775 None:intergenic 15.0%
!!! TCTTTTAAATTTTTTGGATA+CGG + chr3.3:58482406-58482425 MS.gene049714:intron 15.0%
!! AAACCTAACAAATTCTAATA+TGG + chr3.3:58484646-58484665 MS.gene049714:intron 20.0%
!! AAATGAAAAACAAACACTTA+TGG - chr3.3:58485487-58485506 None:intergenic 20.0%
!! AAATTTAAGCAAGGTAATTA+AGG - chr3.3:58483509-58483528 None:intergenic 20.0%
!! AACATATGGTAATAATTTCA+TGG - chr3.3:58484715-58484734 None:intergenic 20.0%
!! AATCTAATACAGTTGTAAAA+TGG - chr3.3:58482444-58482463 None:intergenic 20.0%
!! ACATATGGTAATAATTTCAT+GGG - chr3.3:58484714-58484733 None:intergenic 20.0%
!! AGATATTTCATGTTTACTTA+AGG - chr3.3:58485310-58485329 None:intergenic 20.0%
!! ATTATATTAGAATAACCATG+TGG + chr3.3:58484835-58484854 MS.gene049714:intron 20.0%
!! CAAAAGTAAATAAACAAAGT+CGG - chr3.3:58483884-58483903 None:intergenic 20.0%
!! CGTAATTATTAGACTAATTA+AGG - chr3.3:58483316-58483335 None:intergenic 20.0%
!! GAATTATATTTGAGTGTAAT+TGG + chr3.3:58485426-58485445 MS.gene049714:intron 20.0%
!! GGAAAAATAATATTCTACAT+TGG + chr3.3:58485620-58485639 MS.gene049714:intron 20.0%
!! TATAAATTAACTGTTGGATT+AGG + chr3.3:58483607-58483626 MS.gene049714:intron 20.0%
!! TATTACCATATGTTGTATTT+GGG + chr3.3:58484721-58484740 MS.gene049714:intron 20.0%
!! TCCTAATATTACAAATTTCA+AGG + chr3.3:58484217-58484236 MS.gene049714:intron 20.0%
!! TTATTACCATATGTTGTATT+TGG + chr3.3:58484720-58484739 MS.gene049714:intron 20.0%
!! TTCACATATATAGACTTTAA+AGG - chr3.3:58483440-58483459 None:intergenic 20.0%
!!! AGATTGATTTAGATTCAATA+TGG + chr3.3:58484903-58484922 MS.gene049714:intron 20.0%
!!! ATTGATTTAGATTCAATATG+GGG + chr3.3:58484905-58484924 MS.gene049714:intron 20.0%
!!! ATTGTTGTTGTTATTATGTT+TGG + chr3.3:58482623-58482642 MS.gene049714:intron 20.0%
!!! CTCAATTTGTTTTTATAAGT+TGG + chr3.3:58484428-58484447 MS.gene049714:intron 20.0%
!!! GATTGATTTAGATTCAATAT+GGG + chr3.3:58484904-58484923 MS.gene049714:intron 20.0%
!!! TAATTTAGATGGTGAATTTT+AGG + chr3.3:58482673-58482692 MS.gene049714:intron 20.0%
!!! TATGTTTGGTGTTATATTAT+AGG + chr3.3:58482637-58482656 MS.gene049714:intron 20.0%
! AAAAAATTGCATCAGTTCAA+TGG - chr3.3:58485794-58485813 None:intergenic 25.0%
! AACTTAAGTACTAGTCATTT+GGG - chr3.3:58484342-58484361 None:intergenic 25.0%
! AAGGTACAAAAGATATACAA+AGG - chr3.3:58484046-58484065 None:intergenic 25.0%
! AATTAAGTAGTAAGCTAAGA+AGG + chr3.3:58482893-58482912 MS.gene049714:intron 25.0%
! AATTTCTTGTGTTGAAATTG+TGG + chr3.3:58483150-58483169 MS.gene049714:intron 25.0%
! ACAAAATAAAGAAGGTTTAC+AGG - chr3.3:58484978-58484997 None:intergenic 25.0%
! AGAATTATGAGGTTCATAAT+TGG - chr3.3:58481606-58481625 None:intergenic 25.0%
! CACATGAATCACATAAATTA+TGG + chr3.3:58481839-58481858 MS.gene049714:CDS 25.0%
! CTCTAAATAGTTAGGATAAA+AGG + chr3.3:58484671-58484690 MS.gene049714:intron 25.0%
! GACTAATTAAGGGAAAAAAA+TGG - chr3.3:58483305-58483324 None:intergenic 25.0%
! GAGAAAAATGTTTACTTTCA+TGG - chr3.3:58482369-58482388 None:intergenic 25.0%
! GCCTTGAAATTTGTAATATT+AGG - chr3.3:58484221-58484240 None:intergenic 25.0%
! TAAAATATGCATTAATCACG+AGG - chr3.3:58483066-58483085 None:intergenic 25.0%
! TAATTCTTCAAGAACAACTT+TGG + chr3.3:58481619-58481638 MS.gene049714:CDS 25.0%
! TCAAGATCCATATCAATATT+CGG - chr3.3:58484262-58484281 None:intergenic 25.0%
! TCTCATTAAGTAAACATTAG+TGG + chr3.3:58485362-58485381 MS.gene049714:intron 25.0%
! TTGATTTAGATTCAATATGG+GGG + chr3.3:58484906-58484925 MS.gene049714:intron 25.0%
! TTTGGCTAATGTAATTTAGA+TGG + chr3.3:58482662-58482681 MS.gene049714:intron 25.0%
!! CTTTTATCCTAACTATTTAG+AGG - chr3.3:58484673-58484692 None:intergenic 25.0%
!! GGTGTTATATTATAGGTATT+TGG + chr3.3:58482644-58482663 MS.gene049714:intron 25.0%
!! TATATATGTGAACACTTTTG+AGG + chr3.3:58483448-58483467 MS.gene049714:intron 25.0%
!! TGTCAACTTATCAACTATTT+TGG - chr3.3:58484542-58484561 None:intergenic 25.0%
!!! AAAGAAGAATTAGAAGTACT+TGG - chr3.3:58481563-58481582 None:intergenic 25.0%
!!! CTGATGCAATTTTTTTTTCT+TGG + chr3.3:58485799-58485818 MS.gene049714:intron 25.0%
!!! CTTGTTGGTTTTGATAATAA+GGG - chr3.3:58481739-58481758 None:intergenic 25.0%
!!! TATTTACTTTTGCTTTTGCA+TGG + chr3.3:58483892-58483911 MS.gene049714:intron 25.0%
!!! TTTTGATAATAAGGGTTATG+TGG - chr3.3:58481731-58481750 None:intergenic 25.0%
AAGAATAAAAAGGGTTCTTG+TGG + chr3.3:58483971-58483990 MS.gene049714:intron 30.0%
AAGGCTCATAATAGTAAGTT+TGG + chr3.3:58485404-58485423 MS.gene049714:intron 30.0%
AATGACAGACAGTAGTTAAT+AGG - chr3.3:58485236-58485255 None:intergenic 30.0%
AATTAAAATTTAGGTGCACG+AGG - chr3.3:58484943-58484962 None:intergenic 30.0%
ACATTCCCAAATACAACATA+TGG - chr3.3:58484729-58484748 None:intergenic 30.0%
ATACAATACATACCTGCAAA+TGG - chr3.3:58482765-58482784 None:intergenic 30.0%
ATATGGACCTCTAAATAGTT+AGG + chr3.3:58484663-58484682 MS.gene049714:intron 30.0%
ATGAAGGATTGTTGCATTAT+TGG - chr3.3:58483018-58483037 None:intergenic 30.0%
ATTAAAATTTAGGTGCACGA+GGG - chr3.3:58484942-58484961 None:intergenic 30.0%
CAAGATCCATATCAATATTC+GGG - chr3.3:58484261-58484280 None:intergenic 30.0%
CATTAAGTAAACATTAGTGG+TGG + chr3.3:58485365-58485384 MS.gene049714:intron 30.0%
GAACTTAAGTACTAGTCATT+TGG - chr3.3:58484343-58484362 None:intergenic 30.0%
GATTACTATAAAGGTAGAAC+TGG - chr3.3:58485125-58485144 None:intergenic 30.0%
GCTAATAAGGTTGTAAATGA+AGG - chr3.3:58483034-58483053 None:intergenic 30.0%
GGATATTGATGAGATTTGAA+AGG - chr3.3:58482160-58482179 None:intergenic 30.0%
GTTGTTCTTGAAGAATTATG+AGG - chr3.3:58481617-58481636 None:intergenic 30.0%
TACAACTTAAACCAATCCTA+AGG - chr3.3:58485568-58485587 None:intergenic 30.0%
TAGTTGTAATACATAGCCTT+AGG + chr3.3:58485549-58485568 MS.gene049714:intron 30.0%
TATAGTGTTACACTTCATGT+TGG + chr3.3:58484501-58484520 MS.gene049714:intron 30.0%
TCATAACCCGAATATTGATA+TGG + chr3.3:58484252-58484271 MS.gene049714:intron 30.0%
TGATTTAGATTCAATATGGG+GGG + chr3.3:58484907-58484926 MS.gene049714:intron 30.0%
TGGTGATATAAACACATCTT+TGG - chr3.3:58481989-58482008 None:intergenic 30.0%
TTATGAGGTTCATAATTGGA+TGG - chr3.3:58481602-58481621 None:intergenic 30.0%
TTGCACAAATCAAGAAATAG+TGG + chr3.3:58484452-58484471 MS.gene049714:intron 30.0%
TTTAAGCAAGGTAATTAAGG+TGG - chr3.3:58483506-58483525 None:intergenic 30.0%
! ATGTTACTTGGAAGAATACA+TGG - chr3.3:58484378-58484397 None:intergenic 30.0%
! GGTCCATATTAGAATTTGTT+AGG - chr3.3:58484652-58484671 None:intergenic 30.0%
! GTCAATTTTCAGATCAAAGA+GGG + chr3.3:58483689-58483708 MS.gene049714:CDS 30.0%
! TAATCCATATCTTGCTGTAT+TGG - chr3.3:58483727-58483746 None:intergenic 30.0%
! TCTTTTGTACCTTAGTGATT+TGG + chr3.3:58484053-58484072 MS.gene049714:intron 30.0%
! TTTTTCTCTTGAATGTTCCA+TGG - chr3.3:58481963-58481982 None:intergenic 30.0%
!! CTTCATAAAAAAGAGTGTTG+TGG - chr3.3:58483954-58483973 None:intergenic 30.0%
!! TTGGGTTTTATGTAATCTAC+AGG - chr3.3:58484293-58484312 None:intergenic 30.0%
!!! CTTGGAAGAAATTTTAGTTG+TGG + chr3.3:58481671-58481690 MS.gene049714:CDS 30.0%
!!! GCTTGTTGGTTTTGATAATA+AGG - chr3.3:58481740-58481759 None:intergenic 30.0%
!!! TTTTTTGGAGTGAGTCATTT+GGG - chr3.3:58484311-58484330 None:intergenic 30.0%
!!! TTTTTTTGGAGTGAGTCATT+TGG - chr3.3:58484312-58484331 None:intergenic 30.0%
AAGGGTTAAGACCAATCAAA+GGG + chr3.3:58481897-58481916 MS.gene049714:CDS 35.0%
AATGAACGGTTATGATAGAC+TGG - chr3.3:58481926-58481945 None:intergenic 35.0%
ACTGGAGTTTAAAAACGACA+TGG - chr3.3:58482089-58482108 None:intergenic 35.0%
AGAATTACTCCATAGAGTGT+TGG - chr3.3:58483758-58483777 None:intergenic 35.0%
AGGCATGTCTTTCTCTTATT+AGG + chr3.3:58485165-58485184 MS.gene049714:intron 35.0%
AGGTTCGTTATTAAACCTTG+TGG - chr3.3:58482140-58482159 None:intergenic 35.0%
ATAATTGGAGATGCTCTTGA+TGG - chr3.3:58485599-58485618 None:intergenic 35.0%
ATAGCCAATGAAGAAGAAAG+TGG + chr3.3:58482826-58482845 MS.gene049714:intron 35.0%
ATCATCATCACTCACACTAT+GGG + chr3.3:58482194-58482213 MS.gene049714:CDS 35.0%
ATTTGATGTCCTCCTGATAT+TGG - chr3.3:58485932-58485951 None:intergenic 35.0%
CAAAAACCTTGATCTCATCA+TGG - chr3.3:58482248-58482267 None:intergenic 35.0%
CAAAACAGTTCATGCATGTT+TGG + chr3.3:58485754-58485773 MS.gene049714:intron 35.0%
CAAACATACACACAAGTCAA+AGG - chr3.3:58484195-58484214 None:intergenic 35.0%
CAGTGAATGAATGAATGTGT+GGG + chr3.3:58482851-58482870 MS.gene049714:intron 35.0%
CTCTATGGAGTAATTCTTCA+AGG + chr3.3:58483761-58483780 MS.gene049714:CDS 35.0%
CTGGAGTTTAAAAACGACAT+GGG - chr3.3:58482088-58482107 None:intergenic 35.0%
CTTATGTGAAGAGAAAGATC+AGG - chr3.3:58481536-58481555 None:intergenic 35.0%
GTTATTAAACCTTGTGGCTA+CGG - chr3.3:58482134-58482153 None:intergenic 35.0%
TAAGTAAACATTAGTGGTGG+TGG + chr3.3:58485368-58485387 MS.gene049714:intron 35.0%
TAATCGAATGCTCATTCGTT+AGG + chr3.3:58484117-58484136 MS.gene049714:intron 35.0%
TAGACCAATACAGCAAGATA+TGG + chr3.3:58483720-58483739 MS.gene049714:CDS 35.0%
TCAATGAAAATCCCTTCCAA+GGG - chr3.3:58481488-58481507 None:intergenic 35.0%
TCATGTAAAAAGCCATTTGC+AGG + chr3.3:58482750-58482769 MS.gene049714:CDS 35.0%
TGCTCATTCGTTAGGATAAA+TGG + chr3.3:58484125-58484144 MS.gene049714:intron 35.0%
TGTCATCAACATCATCAGAA+GGG + chr3.3:58481879-58481898 MS.gene049714:CDS 35.0%
TTACTATTATGAGCCTTGCA+TGG - chr3.3:58485401-58485420 None:intergenic 35.0%
TTCAATGAAAATCCCTTCCA+AGG - chr3.3:58481489-58481508 None:intergenic 35.0%
TTCCAATCACAACCAATATC+AGG + chr3.3:58485917-58485936 MS.gene049714:CDS 35.0%
TTGTTGTGATGTTGAAAGTG+AGG - chr3.3:58481770-58481789 None:intergenic 35.0%
! AAAGTCAGTATTGGAACTGA+TGG + chr3.3:58482705-58482724 MS.gene049714:CDS 35.0%
! CGTCAATTTTCAGATCAAAG+AGG + chr3.3:58483688-58483707 MS.gene049714:CDS 35.0%
! CTTCTTTTTGTCGGCAATTT+AGG - chr3.3:58482271-58482290 None:intergenic 35.0%
! GTAATACATAGCCTTAGGAT+TGG + chr3.3:58485554-58485573 MS.gene049714:intron 35.0%
! TTTGTACCTTAGTGATTTGG+TGG + chr3.3:58484056-58484075 MS.gene049714:intron 35.0%
!! ATCAGTTCCAATACTGACTT+TGG - chr3.3:58482706-58482725 None:intergenic 35.0%
!! GAAGAATTAGAAGTACTTGG+AGG - chr3.3:58481560-58481579 None:intergenic 35.0%
!! GAGGTTGATGTTTGCTAATA+AGG - chr3.3:58483047-58483066 None:intergenic 35.0%
!! GGTGTTGTTGATGTTGAAAT+TGG - chr3.3:58481512-58481531 None:intergenic 35.0%
!! TCAAGAGCATCTCCAATTAT+TGG + chr3.3:58485599-58485618 MS.gene049714:intron 35.0%
!! TGCATGAACTGTTTTGTTGA+TGG - chr3.3:58485750-58485769 None:intergenic 35.0%
!!! ATGTCGTTTTTAAACTCCAG+TGG + chr3.3:58482088-58482107 MS.gene049714:CDS 35.0%
AAGCATCCATGATGAGATCA+AGG + chr3.3:58482239-58482258 MS.gene049714:CDS 40.0%
AATGAATGAATGTGTGGGAG+TGG + chr3.3:58482856-58482875 MS.gene049714:intron 40.0%
ACAAGTCCAAACGACATAGA+TGG + chr3.3:58485878-58485897 MS.gene049714:CDS 40.0%
ACATTGATAGGCAAGTCACA+TGG - chr3.3:58485459-58485478 None:intergenic 40.0%
ACCAATCCACCAAATCACTA+AGG - chr3.3:58484065-58484084 None:intergenic 40.0%
ACCATGTGGTGAAATTCTTG+AGG + chr3.3:58484849-58484868 MS.gene049714:intron 40.0%
ACCTCAAGAATTTCACCACA+TGG - chr3.3:58484853-58484872 None:intergenic 40.0%
AGCAACACCAAAGTCAGTAT+TGG + chr3.3:58482696-58482715 MS.gene049714:CDS 40.0%
AGTGAGGAAAATGAGCTTGT+TGG - chr3.3:58481754-58481773 None:intergenic 40.0%
ATCAGGAGGACATCAAATTC+AGG + chr3.3:58485934-58485953 MS.gene049714:CDS 40.0%
ATGTGAAGAGAAAGATCAGG+TGG - chr3.3:58481533-58481552 None:intergenic 40.0%
ATGTTCCATGGCTGGTAAAA+AGG - chr3.3:58481951-58481970 None:intergenic 40.0%
CAATCACAACCAATATCAGG+AGG + chr3.3:58485920-58485939 MS.gene049714:CDS 40.0%
CATCATCATCACTCACACTA+TGG + chr3.3:58482193-58482212 MS.gene049714:CDS 40.0%
CTGAAACCATCTATGTCGTT+TGG - chr3.3:58485887-58485906 None:intergenic 40.0%
CTGGTAAAAAGGGGAATGAA+CGG - chr3.3:58481940-58481959 None:intergenic 40.0%
CTTGTGAGAGTGAGACTATT+AGG + chr3.3:58482566-58482585 MS.gene049714:intron 40.0%
GAAGGGTTAAGACCAATCAA+AGG + chr3.3:58481896-58481915 MS.gene049714:CDS 40.0%
GCAGTGAATGAATGAATGTG+TGG + chr3.3:58482850-58482869 MS.gene049714:intron 40.0%
GGTTGTGATTGGAAGATAGT+TGG - chr3.3:58485911-58485930 None:intergenic 40.0%
GTGTCATCAACATCATCAGA+AGG + chr3.3:58481878-58481897 MS.gene049714:CDS 40.0%
TAGACTGGAATCCCTTTGAT+TGG - chr3.3:58481911-58481930 None:intergenic 40.0%
TGAGAGTGAGACTATTAGGT+GGG + chr3.3:58482570-58482589 MS.gene049714:intron 40.0%
TGATCAGTAGTAGAGAACCA+TGG + chr3.3:58485849-58485868 MS.gene049714:intron 40.0%
TGCACCACTTTCTTCTTCAT+TGG - chr3.3:58482833-58482852 None:intergenic 40.0%
TGTTCCATGGCTGGTAAAAA+GGG - chr3.3:58481950-58481969 None:intergenic 40.0%
! AGTGTGAGTGATGATGATGA+TGG - chr3.3:58482192-58482211 None:intergenic 40.0%
! ATGTCGTTTGGACTTGTTTG+TGG - chr3.3:58485875-58485894 None:intergenic 40.0%
! ATTGGAACTGATGGATGTGA+AGG + chr3.3:58482714-58482733 MS.gene049714:CDS 40.0%
! CTCCTGATATTGGTTGTGAT+TGG - chr3.3:58485922-58485941 None:intergenic 40.0%
! GCTCTCATGCTTCTTTTTGT+CGG - chr3.3:58482280-58482299 None:intergenic 40.0%
! GGTTGTTGTTGATGTTGTTG+TGG - chr3.3:58481710-58481729 None:intergenic 40.0%
!! AAAAAAGAGTGTTGTGGACG+TGG - chr3.3:58483948-58483967 None:intergenic 40.0%
!! AAAAAGAGTGTTGTGGACGT+GGG - chr3.3:58483947-58483966 None:intergenic 40.0%
!! ACCTTAGTGATTTGGTGGAT+TGG + chr3.3:58484061-58484080 MS.gene049714:intron 40.0%
!! ATTACTCCATAGAGTGTTGG+TGG - chr3.3:58483755-58483774 None:intergenic 40.0%
ACGGAGTTGAATTAGGCATG+TGG - chr3.3:58482009-58482028 None:intergenic 45.0%
ACTCATCCACCAACACTCTA+TGG + chr3.3:58483746-58483765 MS.gene049714:CDS 45.0%
AGAGGTGAAGATGACGAAGA+AGG - chr3.3:58482034-58482053 None:intergenic 45.0%
ATCAGAGACTGTGTCATGTC+TGG - chr3.3:58482940-58482959 None:intergenic 45.0%
ATTAAACCTTGTGGCTACGG+CGG - chr3.3:58482131-58482150 None:intergenic 45.0%
CCACAAATTGGAAGCAATGG+TGG + chr3.3:58483661-58483680 MS.gene049714:CDS 45.0%
CCACCATTGCTTCCAATTTG+TGG - chr3.3:58483664-58483683 None:intergenic 45.0%
CGGCATGAACAAATCTAGCA+TGG - chr3.3:58482330-58482349 None:intergenic 45.0%
GAAGATGACGAAGAAGGAGA+CGG - chr3.3:58482028-58482047 None:intergenic 45.0%
GAAGGAGACGGAGTTGAATT+AGG - chr3.3:58482016-58482035 None:intergenic 45.0%
GAATTACCTGAAGAAGCTGC+AGG - chr3.3:58483264-58483283 None:intergenic 45.0%
GAGGATGATGTGCCACAAAT+TGG + chr3.3:58483649-58483668 MS.gene049714:CDS 45.0%
GCTCACACTGAACTATCTCT+TGG + chr3.3:58481653-58481672 MS.gene049714:CDS 45.0%
GTACTTGTCCATCGCATTCT+TGG - chr3.3:58482304-58482323 None:intergenic 45.0%
GTGAGAGTGAGACTATTAGG+TGG + chr3.3:58482569-58482588 MS.gene049714:intron 45.0%
GTGCCACAAATTGGAAGCAA+TGG + chr3.3:58483658-58483677 MS.gene049714:CDS 45.0%
GTTCCATGGCTGGTAAAAAG+GGG - chr3.3:58481949-58481968 None:intergenic 45.0%
TCTCTTGAATGTTCCATGGC+TGG - chr3.3:58481959-58481978 None:intergenic 45.0%
TTAGGCCTTTCAGATGGATC+TGG + chr3.3:58483625-58483644 MS.gene049714:intron 45.0%
! ATTCCCCTTTTTACCAGCCA+TGG + chr3.3:58481943-58481962 MS.gene049714:CDS 45.0%
! GTTGGATTAGGCCTTTCAGA+TGG + chr3.3:58483619-58483638 MS.gene049714:intron 45.0%
! TTTAAACTCCAGTGGCTCTG+CGG + chr3.3:58482096-58482115 MS.gene049714:CDS 45.0%
! TTTGGACTTGTTTGTGGCCA+TGG - chr3.3:58485869-58485888 None:intergenic 45.0%
!! GTAAACATTAGTGGTGGTGG+AGG + chr3.3:58485371-58485390 MS.gene049714:intron 45.0%
!! GTGAGTGATGATGATGATGG+TGG - chr3.3:58482189-58482208 None:intergenic 45.0%
!! TGATGATGATGGTGGTGCAA+TGG - chr3.3:58482181-58482200 None:intergenic 45.0%
!!! AAAAAAATTGTATTTAATTT+AGG + chr3.3:58486004-58486023 MS.gene049714:intron 5.0%
!!! AATTAAATACAATTTTTTTT+TGG - chr3.3:58486003-58486022 None:intergenic 5.0%
AAACCCCCTGCAGCTATGTA+GGG - chr3.3:58482061-58482080 None:intergenic 50.0%
ATGGCCACCAAGAAGCTCAA+CGG - chr3.3:58482350-58482369 None:intergenic 50.0%
CCTCTCCAGATCCATCTGAA+AGG - chr3.3:58483633-58483652 None:intergenic 50.0%
CCTTTCAGATGGATCTGGAG+AGG + chr3.3:58483630-58483649 MS.gene049714:CDS 50.0%
GACAAACCTGCAGCTTCTTC+AGG + chr3.3:58483255-58483274 MS.gene049714:CDS 50.0%
GTTCATGCCGTTGAGCTTCT+TGG + chr3.3:58482340-58482359 MS.gene049714:CDS 50.0%
TAAACCCCCTGCAGCTATGT+AGG - chr3.3:58482062-58482081 None:intergenic 50.0%
TTTCCCCCTACATAGCTGCA+GGG + chr3.3:58482053-58482072 MS.gene049714:CDS 50.0%
! CACTCACACTATGGGAGTGT+TGG + chr3.3:58482202-58482221 MS.gene049714:CDS 50.0%
!! CACTATGGGAGTGTTGGACT+TGG + chr3.3:58482208-58482227 MS.gene049714:CDS 50.0%
!! TGAGAGCACCAAGAATGCGA+TGG + chr3.3:58482293-58482312 MS.gene049714:CDS 50.0%
AACCCCCTGCAGCTATGTAG+GGG - chr3.3:58482060-58482079 None:intergenic 55.0%
CATGCCGTTGAGCTTCTTGG+TGG + chr3.3:58482343-58482362 MS.gene049714:CDS 55.0%
CTTTCCCCCTACATAGCTGC+AGG + chr3.3:58482052-58482071 MS.gene049714:CDS 55.0%
GCAGCTATGTAGGGGGAAAG+AGG - chr3.3:58482052-58482071 None:intergenic 55.0%
TCTATAAGCCGCAGAGCCAC+TGG - chr3.3:58482107-58482126 None:intergenic 55.0%
TGGTGGAGGCTTACCATGCA+AGG + chr3.3:58485385-58485404 MS.gene049714:intron 55.0%
TTCCCCCTACATAGCTGCAG+GGG + chr3.3:58482054-58482073 MS.gene049714:CDS 55.0%
ACCCCCTGCAGCTATGTAGG+GGG - chr3.3:58482059-58482078 None:intergenic 60.0%
ATAGAGCCGCCGTAGCCACA+AGG + chr3.3:58482122-58482141 MS.gene049714:CDS 60.0%
TCCCCCTACATAGCTGCAGG+GGG + chr3.3:58482055-58482074 MS.gene049714:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 58481482 58486031 58481482 ID=MS.gene049714
chr3.3 mRNA 58481482 58486031 58481482 ID=MS.gene049714.t1;Parent=MS.gene049714
chr3.3 exon 58481482 58482373 58481482 ID=MS.gene049714.t1.exon1;Parent=MS.gene049714.t1
chr3.3 CDS 58481482 58482373 58481482 ID=cds.MS.gene049714.t1;Parent=MS.gene049714.t1
chr3.3 exon 58482695 58482771 58482695 ID=MS.gene049714.t1.exon2;Parent=MS.gene049714.t1
chr3.3 CDS 58482695 58482771 58482695 ID=cds.MS.gene049714.t1;Parent=MS.gene049714.t1
chr3.3 exon 58483231 58483276 58483231 ID=MS.gene049714.t1.exon3;Parent=MS.gene049714.t1
chr3.3 CDS 58483231 58483276 58483231 ID=cds.MS.gene049714.t1;Parent=MS.gene049714.t1
chr3.3 exon 58483629 58483782 58483629 ID=MS.gene049714.t1.exon4;Parent=MS.gene049714.t1
chr3.3 CDS 58483629 58483782 58483629 ID=cds.MS.gene049714.t1;Parent=MS.gene049714.t1
chr3.3 exon 58485856 58485955 58485856 ID=MS.gene049714.t1.exon5;Parent=MS.gene049714.t1
chr3.3 CDS 58485856 58485955 58485856 ID=cds.MS.gene049714.t1;Parent=MS.gene049714.t1
chr3.3 exon 58486026 58486031 58486026 ID=MS.gene049714.t1.exon6;Parent=MS.gene049714.t1
chr3.3 CDS 58486026 58486031 58486026 ID=cds.MS.gene049714.t1;Parent=MS.gene049714.t1
Gene Sequence

>MS.gene049714

ATGCCCTTGGAAGGGATTTTCATTGAACCAATTTCAACATCAACAACACCACCTGATCTTTCTCTTCACATAAGTCCTCCAAGTACTTCTAATTCTTCTTTGATTAACACAACTCAACCATCCAATTATGAACCTCATAATTCTTCAAGAACAACTTTGGCTCAAGCTCAAGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTTGTGGTGCTCAAGAACAACCACAACAACATCAACAACAACCACATAACCCTTATTATCAAAACCAACAAGCTCATTTTCCTCACTTTCAACATCACAACAATCACAGCTCTACAACAACAACAACAAGTACTACAACAAATTCTTCAAGTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCAACATCATCAGAAGGGTTAAGACCAATCAAAGGGATTCCAGTCTATCATAACCGTTCATTCCCCTTTTTACCAGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCTAATTCAACTCCGTCTCCTTCTTCGTCATCTTCACCTCTTTCCCCCTACATAGCTGCAGGGGGTTTAGATCCCATGTCGTTTTTAAACTCCAGTGGCTCTGCGGCTTATAGAGCCGCCGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCACCATCATCATCATCACTCACACTATGGGAGTGTTGGACTTGGTAGCTCAGAAGCATCCATGATGAGATCAAGGTTTTTGCCTAAATTGCCGACAAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTAGATTTGTTCATGCCGTTGAGCTTCTTGGTGGCCATGAAAGTAAACATTTTTCTCTTCCACTTTAATTTTCTTCTTTTAAATTTTTTGGATACGGTAATATTAATGACCATTTTACAACTGTATTAGATTTGATCTTCGTCTTTTGAGATTACAAAATATTTATCATATTTTTTATAAAAGTAATTAATTTTTTTCTTAAATAATAAAAGAAAGAGTGTTGTTTACTTGTTACTTGTGAGAGTGAGACTATTAGGTGGGTATTATGTTAAATTTTTAGTTTTTAATTTTATTGTTGTTGTTATTATGTTTGGTGTTATATTATAGGTATTTGGCTAATGTAATTTAGATGGTGAATTTTAGGAGCAACACCAAAGTCAGTATTGGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGGTATGTATTGTATGCATCTATCTACTATATGAAATTGAAATGAAATTGGGCACAATAGCCAATGAAGAAGAAAGTGGTGCAGTGAATGAATGAATGTGTGGGAGTGGATAGTAGTAGTAGTAATTAAGTAGTAAGCTAAGAAGGAGACTTTATCATCTGAGACGACCAGACATGACACAGTCTCTGATTATAGTCATAGAAAGAGAGAGAAAACTGACAACAACAAATAAAAGTCATCATTTTCCAATAATGCAACAATCCTTCATTTACAACCTTATTAGCAAACATCAACCTCGTGATTAATGCATATTTTATATATTTTTATATATCTTATTCAATACAAATAGGTTTATTTTTTTATATATATATTTTCATACTAATTTCTTGTGTTGAAATTGTGGAAGTATCTTTGTAATTAGTATAAAATGTTTGTTTTGTTTTGTGATTTGTTCTTCACAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGTAATTCGTATTGCTCAATCTTCAACCATTTTTTTCCCTTAATTAGTCTAATAATTACGGATGTATTAATTTCTCTTGTTTTTATAGAGAATGTCATCACTTGTGAGTTGTGACTTACTACCTTATTCTTTTCACATTTTTTTTACTGTTATTTTTTCTACCTTTAAAGTCTATATATGTGAACACTTTTGAGGCTTTTTGCCTCTTAAACATATATATAAAAATTCCACCTTAATTACCTTGCTTAAATTTTTTATATATAAAATTATGAAGCAAGATGTGTGCATGCATGTACTTTACATTAATTAATAAATTTATTTTTGGAGTAATTATAAATTAACTGTTGGATTAGGCCTTTCAGATGGATCTGGAGAGGATGATGTGCCACAAATTGGAAGCAATGGTGGAATTCGTCAATTTTCAGATCAAAGAGGGCTAACAGATAGACCAATACAGCAAGATATGGATTACTCATCCACCAACACTCTATGGAGTAATTCTTCAAGGTAACATTATTTTTCAATGTTACTATTTTTCTAAATTTTGAAGTACATATGTTTTATGTGCTTATATAGATGTACATATTTAATTATTTTTTTTGTCACCGACTTTGTTTATTTACTTTTGCTTTTGCATGGAGTATCTCTTGTATAAAAATCAATGCAAACCCACGTCCACAACACTCTTTTTTATGAAGAATAAAAAGGGTTCTTGTGGCAGCTTTTGCTTTAAACTTGTGTGTTTCATTTTCTTCTTTCTTTTCTTTCCTTTGTATATCTTTTGTACCTTAGTGATTTGGTGGATTGGTGAATTCATATAACAAAAGAATGCTACAAGACATAATCGAATGCTCATTCGTTAGGATAAATGGAAAGCAACACAAAGCTTCAGTAATTTGCTTTTTTTTTTCTTCTTCCTTTGACTTGTGTGTATGTTTGTCTCCTAATATTACAAATTTCAAGGCTAATTATTTGATCATAACCCGAATATTGATATGGATCTTGATTTCTGCACCTGTAGATTACATAAAACCCAAATGACTCACTCCAAAAAAAAAAAAAACCCAAATGACTAGTACTTAAGTTCTTCGTATATTGACCATGTATTCTTCCAAGTAACATTAACAATTTATTTTGAAATATATAGTATCACTCAATTTGTTTTTATAAGTTGGTTTGCACAAATCAAGAAATAGTGGTAACTAAATACTAAACAGATTTCAATTATAGTGTTACACTTCATGTTGGTTCACTCTAGTAAGTCCAAAATAGTTGATAAGTTGACAATATAATCTGAAAAAAAAAAATATAGTAATTGTAACATATAAATTTAGAAATGGTGCATAAACAAAAATATATTTTTTATTATAAAACCTAACAAATTCTAATATGGACCTCTAAATAGTTAGGATAAAAGGAAAGCAACACAAAGCTACCCATGAAATTATTACCATATGTTGTATTTGGGAATGTGCACCCTTTTACTAAAATTTTCACTTACAATGCTGTTTCTTTGCTTGTTATAATGTAAATGCGAACTCTTGACTTAAATTACTCGAATTATATTAGAATAACCATGTGGTGAAATTCTTGAGGTCATTATTTTCTATCAAAAAATAAAAGCAAAAGATTGATTTAGATTCAATATGGGGGGTTAAATTGACCCTCGTGCACCTAAATTTTAATTAATTTGAAGTAGCCTGTAAACCTTCTTTATTTTGTTTTTGATAAACAAATCTTGATTTAATTTTTTGTCTTTGAGCTACTTTATGTAAAAATCTTACTTATAGTTAACTATTTTGATGTTGACACTCGACATTCTCTGCAATAATCAAAATTCATATGTCCAGTTCTACCTTTATAGTAATCAAGATATTTTAAAAATTGAGAGGCATGTCTTTCTCTTATTAGGTAATATCTTGATATAAATATATATATTAAAACTTATAGAGTAACACCTATTAACTACTGTCTGTCATTTTTAGTCTAAAAAAAAATATTCTACTGTTTGTCATGATTAAAAAAACATTACCTTAAGTAAACATGAAATATCTCATTGTGACACAAACAAATTATCATTACAAAGTCTCATTAAGTAAACATTAGTGGTGGTGGAGGCTTACCATGCAAGGCTCATAATAGTAAGTTTGGAATTATATTTGAGTGTAATTGGCATTTTGCCATGTGACTTGCCTATCAATGTATCATCCATAAGTGTTTGTTTTTCATTTAGTATACTGTATATCATATACTTGAATCAGTGCTTACATGTATAGTTGTAATACATAGCCTTAGGATTGGTTTAAGTTGTACATTTAATCCATCAAGAGCATCTCCAATTATTGGAAAAATAATATTCTACATTGGAAAAGTGATAAAGACTGAAAAAAGTTTATAAATTCTGGAGTGTGATCGTACTTGAATTGTATCTATACTAAAGACATAGATGTATAGTGAAGTTTTGCACACTGCCATCAACAAAACAGTTCATGCATGTTTGGTATACATAAAGAATCCATTGAACTGATGCAATTTTTTTTTCTTGGTTGTGTCATTTCATCTTAATTAAATTATGATCAGTAGTAGAGAACCATGGCCACAAACAAGTCCAAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGACATCAAATTCAGGTATAACTAATGAGTTTAATATATTTGTTATCATTAATTTGTAACCAAAAAAAAATTGTATTTAATTTAGGCTTAA
Protein sequence

>MS.gene049714.t1

MPLEGIFIEPISTSTTPPDLSLHISPPSTSNSSLINTTQPSNYEPHNSSRTTLAQAQAHTELSLGRNFSCGAQEQPQQHQQQPHNPYYQNQQAHFPHFQHHNNHSSTTTTTSTTTNSSSHMNHINYGVSLLDVSSTSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPSPSSSSSPLSPYIAAGGLDPMSFLNSSGSAAYRAAVATRFNNEPFKSHQYPLHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPIQQDMDYSSTNTLWSNSSSSREPWPQTSPNDIDGFRPTIFQSQPISGGHQIQA