AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049964

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049964.t1 MTR_5g066610 61.513 304 56 8 163 406 30 332 2.73e-93 288
MS.gene049964.t1 MTR_5g087350 70.270 111 27 1 1 111 498 602 3.86e-37 146
MS.gene049964.t1 MTR_5g087350 74.359 78 20 0 85 162 794 871 6.72e-30 124
MS.gene049964.t1 MTR_7g092880 59.398 133 49 2 1 131 474 603 1.57e-34 139
MS.gene049964.t1 MTR_7g092880 65.714 105 31 2 85 185 722 825 1.78e-32 132
MS.gene049964.t1 MTR_5g064180 44.907 216 48 7 221 406 35 209 3.59e-34 129
MS.gene049964.t1 MTR_5g087340 57.143 133 52 2 1 131 498 627 4.43e-34 137
MS.gene049964.t1 MTR_5g087340 73.077 78 21 0 85 162 865 942 8.72e-30 124
MS.gene049964.t1 MTR_5g087360 54.074 135 57 2 3 135 299 430 5.16e-31 128
MS.gene049964.t1 MTR_5g087360 55.172 116 40 3 81 185 584 698 9.10e-27 115
MS.gene049964.t1 MTR_5g087360 43.609 133 64 3 81 203 1077 1208 1.45e-21 99.4
MS.gene049964.t1 MTR_5g087360 54.074 135 57 2 3 135 499 630 7.84e-31 127
MS.gene049964.t1 MTR_5g087360 55.172 116 40 3 81 185 784 898 9.48e-27 115
MS.gene049964.t1 MTR_5g087360 43.609 133 64 3 81 203 1277 1408 1.44e-21 99.4
MS.gene049964.t1 MTR_5g087360 54.074 135 57 2 3 135 499 630 7.88e-31 127
MS.gene049964.t1 MTR_5g087360 55.172 116 40 3 81 185 784 898 9.03e-27 115
MS.gene049964.t1 MTR_5g087360 43.609 133 64 3 81 203 1277 1408 1.43e-21 99.4
MS.gene049964.t1 MTR_5g087370 73.077 78 21 0 85 162 756 833 2.80e-30 125
MS.gene049964.t1 MTR_5g087370 71.795 78 20 1 11 86 481 558 1.93e-22 102
MS.gene049964.t1 MTR_2g105680 45.133 113 51 3 85 194 895 999 1.36e-15 80.5
MS.gene049964.t1 MTR_2g105680 58.108 74 31 0 1 74 613 686 3.76e-15 79.0
MS.gene049964.t1 MTR_5g019940 40.171 117 58 3 85 198 357 464 5.52e-15 78.2
MS.gene049964.t1 MTR_1g069470 48.837 86 34 2 85 170 809 884 1.47e-14 77.0
MS.gene049964.t1 MTR_7g083290 51.515 66 32 0 410 475 137 202 2.07e-14 72.4
MS.gene049964.t1 MTR_7g098610 47.674 86 35 2 85 170 818 893 2.62e-14 76.3
MS.gene049964.t1 MTR_7g084220 40.708 113 55 3 85 194 889 992 3.17e-14 76.3
MS.gene049964.t1 MTR_7g018890 41.026 117 57 3 85 198 496 603 8.57e-14 74.7
MS.gene049964.t1 MTR_4g036695 37.168 113 57 2 85 194 598 699 8.57e-14 74.7
MS.gene049964.t1 MTR_2g437730 36.283 113 63 2 85 194 959 1065 9.59e-14 74.7
MS.gene049964.t1 MTR_3g116450 46.512 86 37 2 85 170 389 465 1.27e-13 73.9
MS.gene049964.t1 MTR_1g090520 53.488 86 39 1 1 86 637 721 1.59e-13 73.9
MS.gene049964.t1 MTR_1g090520 41.593 113 57 2 85 194 909 1015 1.13e-12 71.2
MS.gene049964.t1 MTR_8g077850 43.023 86 40 1 85 170 438 514 2.07e-13 73.2
MS.gene049964.t1 MTR_2g072520 36.283 113 60 3 85 194 127 230 2.57e-13 71.2
MS.gene049964.t1 MTR_4g105370 38.938 113 60 3 85 194 874 980 2.65e-13 73.2
MS.gene049964.t1 MTR_5g034210 46.512 86 37 2 85 170 160 236 2.94e-13 72.0
MS.gene049964.t1 MTR_1g080440 37.719 114 58 3 85 195 815 918 3.13e-13 72.8
MS.gene049964.t1 MTR_5g034210 44.186 86 39 1 85 170 167 243 3.33e-13 71.6
MS.gene049964.t1 MTR_5g034210 46.512 86 37 2 85 170 247 323 4.19e-13 72.0
MS.gene049964.t1 MTR_1g102500 44.186 86 39 1 85 170 765 841 4.21e-13 72.4
MS.gene049964.t1 MTR_1g047670 42.391 92 43 2 81 171 910 992 6.04e-13 72.0
MS.gene049964.t1 MTR_6g015190 38.938 113 57 3 85 194 934 1037 8.56e-13 71.6
MS.gene049964.t1 MTR_2g008370 35.897 117 63 4 85 198 393 500 9.26e-13 70.9
MS.gene049964.t1 MTR_4g036575 44.186 86 37 2 85 170 827 901 1.21e-12 71.2
MS.gene049964.t1 MTR_1g064630 42.045 88 42 2 85 172 151 229 1.22e-12 69.7
MS.gene049964.t1 MTR_8g064690 45.349 86 38 2 85 170 412 488 1.24e-12 70.9
MS.gene049964.t1 MTR_1g079520 41.379 87 42 1 85 171 872 949 1.99e-12 70.5
MS.gene049964.t1 MTR_3g095100 42.308 78 37 1 85 162 978 1047 2.13e-12 70.5
MS.gene049964.t1 MTR_1g012550 43.182 88 41 2 85 172 603 681 2.18e-12 70.1
MS.gene049964.t1 MTR_4g088320 30.097 206 120 4 85 275 799 995 2.44e-12 70.1
MS.gene049964.t1 MTR_2g008400 36.301 146 74 5 50 185 357 493 3.56e-12 69.3
MS.gene049964.t1 MTR_6g088785 40.909 88 44 1 85 172 809 888 4.96e-12 68.9
MS.gene049964.t1 MTR_3g009400 37.607 117 62 3 85 198 1008 1116 4.97e-12 69.3
MS.gene049964.t1 MTR_6g068970 39.560 91 46 2 85 174 830 912 6.11e-12 68.9
MS.gene049964.t1 MTR_5g026510 36.283 113 60 3 85 194 406 509 6.63e-12 68.2
MS.gene049964.t1 MTR_2g008360 39.423 104 51 3 85 185 397 491 6.81e-12 68.2
MS.gene049964.t1 MTR_6g015265 38.053 113 58 3 85 194 933 1036 7.04e-12 68.6
MS.gene049964.t1 MTR_4g036505 40.698 86 40 2 85 170 801 875 9.10e-12 68.2
MS.gene049964.t1 MTR_5g014700 48.837 86 36 3 85 170 795 872 9.84e-12 68.2
MS.gene049964.t1 MTR_4g094790 41.176 85 44 1 85 169 1074 1152 1.04e-11 68.2
MS.gene049964.t1 MTR_5g090100 46.512 86 40 2 85 170 784 863 1.08e-11 68.2
MS.gene049964.t1 MTR_2g014560 33.577 137 81 3 85 218 793 922 1.11e-11 68.2
MS.gene049964.t1 MTR_6g088785 42.857 84 40 1 85 168 809 884 1.20e-11 67.8
MS.gene049964.t1 MTR_5g014720 37.168 113 60 2 85 194 810 914 1.42e-11 67.8
MS.gene049964.t1 MTR_2g008380 35.878 131 66 4 64 185 362 483 1.47e-11 67.4
MS.gene049964.t1 MTR_7g013350 28.696 230 94 9 1 171 80 298 1.72e-11 66.6
MS.gene049964.t1 MTR_7g009940 40.000 100 47 3 88 184 628 717 1.77e-11 67.4
MS.gene049964.t1 MTR_2g008390 36.301 146 74 5 50 185 356 492 2.16e-11 66.6
MS.gene049964.t1 MTR_6g088610 43.023 86 40 1 85 170 396 472 2.18e-11 66.6
MS.gene049964.t1 MTR_2g070020 41.379 87 42 2 85 171 913 990 2.39e-11 67.0
MS.gene049964.t1 MTR_0194s0030 46.753 77 32 2 95 171 442 509 2.60e-11 66.6
MS.gene049964.t1 MTR_6g088790 43.023 86 41 1 85 170 809 886 2.83e-11 66.6
MS.gene049964.t1 MTR_7g068190 37.273 110 57 3 88 194 150 250 2.98e-11 65.5
MS.gene049964.t1 MTR_7g081720 40.476 84 40 2 88 171 894 967 3.21e-11 66.6
MS.gene049964.t1 MTR_1g097580 58.000 50 21 0 85 134 876 925 3.64e-11 66.2
MS.gene049964.t1 MTR_3g107070 42.529 87 41 2 85 171 575 652 3.88e-11 66.2
MS.gene049964.t1 MTR_2g100450 42.308 78 37 1 85 162 470 539 4.10e-11 65.9
MS.gene049964.t1 MTR_2g100450 42.308 78 37 1 85 162 675 744 4.13e-11 65.9
MS.gene049964.t1 MTR_8g028115 38.043 92 49 1 71 162 9 92 4.21e-11 63.2
MS.gene049964.t1 MTR_4g097880 47.674 86 37 3 85 170 792 869 4.28e-11 66.2
MS.gene049964.t1 MTR_2g100450 42.308 78 37 1 85 162 675 744 5.03e-11 65.9
MS.gene049964.t1 MTR_7g089465 54.762 42 19 0 415 456 60 101 7.21e-11 59.3
MS.gene049964.t1 MTR_1g015530 38.636 88 45 1 85 172 725 803 8.50e-11 65.1
MS.gene049964.t1 MTR_1g015530 38.636 88 45 1 85 172 754 832 8.58e-11 65.1
MS.gene049964.t1 MTR_2g100470 43.590 78 36 2 85 162 653 722 9.45e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049964.t1 AT1G73080 42.478 113 52 3 85 194 931 1033 2.94e-15 79.3
MS.gene049964.t1 AT1G73080 46.429 84 45 0 1 84 646 729 1.37e-11 67.8
MS.gene049964.t1 AT5G44700 28.718 195 116 5 85 262 1056 1244 6.13e-15 78.6
MS.gene049964.t1 AT4G32710 46.512 86 40 1 85 170 490 569 4.83e-14 75.5
MS.gene049964.t1 AT2G18470 40.171 117 58 3 85 198 385 492 5.10e-14 75.1
MS.gene049964.t1 AT1G17750 39.655 116 57 4 85 197 898 1003 5.55e-14 75.5
MS.gene049964.t1 AT1G72180 43.678 87 38 2 85 171 791 866 6.23e-14 75.1
MS.gene049964.t1 AT5G65710 41.593 113 59 3 85 194 794 902 6.72e-14 75.1
MS.gene049964.t1 AT2G18470 40.171 117 58 3 85 198 385 492 7.91e-14 74.7
MS.gene049964.t1 AT2G18470 40.171 117 58 3 85 198 385 492 7.91e-14 74.7
MS.gene049964.t1 AT2G18470 40.171 117 58 3 85 198 385 492 7.91e-14 74.7
MS.gene049964.t1 AT1G78530 43.590 78 35 1 85 162 174 242 8.16e-14 72.4
MS.gene049964.t1 AT4G28650 44.186 86 38 1 85 170 808 883 9.27e-14 74.7
MS.gene049964.t1 AT4G34440 47.126 87 37 2 85 171 413 490 1.07e-13 74.3
MS.gene049964.t1 AT4G34440 47.126 87 37 2 85 171 413 490 1.07e-13 74.3
MS.gene049964.t1 AT1G08590 39.474 114 56 3 85 195 831 934 1.12e-13 74.3
MS.gene049964.t1 AT1G49270 41.026 117 57 3 85 198 438 545 1.38e-13 73.9
MS.gene049964.t1 AT1G10620 43.678 87 40 1 85 171 471 548 1.97e-13 73.6
MS.gene049964.t1 AT1G78530 43.590 78 35 1 85 162 174 242 2.03e-13 72.0
MS.gene049964.t1 AT3G18810 45.349 86 38 2 85 170 438 514 2.48e-13 73.2
MS.gene049964.t1 AT1G70460 46.512 86 37 2 85 170 454 530 2.48e-13 73.2
MS.gene049964.t1 AT5G07180 43.023 86 40 1 85 170 657 733 2.56e-13 73.2
MS.gene049964.t1 AT5G59660 40.678 118 59 3 72 186 574 683 2.67e-13 73.2
MS.gene049964.t1 AT5G59660 40.678 118 59 3 72 186 577 686 2.68e-13 73.2
MS.gene049964.t1 AT5G07180 43.023 86 40 1 85 170 753 829 2.73e-13 73.2
MS.gene049964.t1 AT5G59660 40.678 118 59 3 72 186 552 661 3.03e-13 72.8
MS.gene049964.t1 AT1G23540 43.678 87 40 1 85 171 472 549 5.16e-13 72.0
MS.gene049964.t1 AT3G46410 33.125 160 91 4 31 186 35 182 5.68e-13 70.1
MS.gene049964.t1 AT5G62230 41.860 86 41 1 85 170 750 826 7.81e-13 71.6
MS.gene049964.t1 AT5G62230 41.860 86 41 1 85 170 702 778 8.06e-13 71.6
MS.gene049964.t1 AT5G61480 44.318 88 38 2 85 172 829 905 8.18e-13 71.6
MS.gene049964.t1 AT2G35620 38.053 113 58 3 85 194 404 507 8.69e-13 71.2
MS.gene049964.t1 AT2G35620 38.053 113 58 3 85 194 404 507 8.69e-13 71.2
MS.gene049964.t1 AT2G35620 38.053 113 58 3 85 194 404 507 8.69e-13 71.2
MS.gene049964.t1 AT2G35620 38.053 113 58 3 85 194 404 507 8.69e-13 71.2
MS.gene049964.t1 AT1G52290 43.678 87 40 1 85 171 244 321 9.48e-13 70.9
MS.gene049964.t1 AT1G31420 37.168 113 59 3 85 194 406 509 1.16e-12 70.9
MS.gene049964.t1 AT1G31420 37.168 113 59 3 85 194 407 510 1.19e-12 70.9
MS.gene049964.t1 AT1G31420 37.168 113 59 3 85 194 407 510 1.19e-12 70.9
MS.gene049964.t1 AT1G52290 43.678 87 40 1 85 171 244 321 1.25e-12 70.1
MS.gene049964.t1 AT1G34110 47.436 78 34 2 85 162 877 947 1.40e-12 70.9
MS.gene049964.t1 AT1G34110 47.436 78 34 2 85 162 877 947 1.44e-12 70.9
MS.gene049964.t1 AT3G02130 38.938 113 57 3 85 194 973 1076 1.75e-12 70.9
MS.gene049964.t1 AT5G49660 36.283 113 61 2 85 194 765 869 1.77e-12 70.5
MS.gene049964.t1 AT3G02130 38.938 113 57 3 85 194 956 1059 1.95e-12 70.5
MS.gene049964.t1 AT4G20140 42.529 87 44 2 85 171 1061 1141 2.10e-12 70.5
MS.gene049964.t1 AT5G38560 37.607 117 63 2 85 198 440 549 2.60e-12 69.7
MS.gene049964.t1 AT5G25930 38.393 112 57 3 85 192 796 899 2.61e-12 70.1
MS.gene049964.t1 AT1G17230 43.678 87 40 2 85 171 903 980 3.58e-12 69.7
MS.gene049964.t1 AT1G17230 43.678 87 40 2 85 171 903 980 3.71e-12 69.7
MS.gene049964.t1 AT1G68690 44.186 86 39 2 85 170 477 553 3.94e-12 69.3
MS.gene049964.t1 AT1G68690 44.186 86 39 2 85 170 477 553 3.94e-12 69.3
MS.gene049964.t1 AT1G68690 44.186 86 39 2 85 170 477 553 3.94e-12 69.3
MS.gene049964.t1 AT2G33170 42.529 87 41 2 85 171 929 1006 5.06e-12 69.3
MS.gene049964.t1 AT2G33170 42.529 87 41 2 85 171 929 1006 5.06e-12 69.3
MS.gene049964.t1 AT1G68690 44.186 86 39 2 85 170 477 553 5.40e-12 68.9
MS.gene049964.t1 AT3G24550 43.023 86 40 1 85 170 381 457 7.01e-12 68.6
MS.gene049964.t1 AT5G63930 42.529 87 41 2 85 171 909 986 7.49e-12 68.6
MS.gene049964.t1 AT5G48940 39.080 87 45 2 85 171 897 975 8.10e-12 68.6
MS.gene049964.t1 AT4G29180 43.023 86 41 2 85 170 678 755 8.11e-12 68.6
MS.gene049964.t1 AT5G63930 42.529 87 41 2 85 171 845 922 8.15e-12 68.6
MS.gene049964.t1 AT1G17230 45.570 79 34 2 85 163 903 972 8.18e-12 68.6
MS.gene049964.t1 AT4G29180 44.186 86 40 2 85 170 679 756 8.26e-12 68.6
MS.gene049964.t1 AT4G29180 43.023 86 41 2 85 170 681 758 8.71e-12 68.2
MS.gene049964.t1 AT3G46400 38.095 105 54 2 85 186 678 774 1.30e-11 67.8
MS.gene049964.t1 AT4G39400 40.698 86 43 1 77 162 978 1055 1.31e-11 67.8
MS.gene049964.t1 AT1G26150 38.462 117 60 3 85 198 531 638 1.39e-11 67.8
MS.gene049964.t1 AT1G26150 38.462 117 60 3 85 198 531 638 1.39e-11 67.4
MS.gene049964.t1 AT5G62710 43.678 87 40 2 76 162 372 449 1.45e-11 67.4
MS.gene049964.t1 AT2G26330 41.573 89 39 2 85 171 750 827 1.56e-11 67.4
MS.gene049964.t1 AT4G33430 37.209 129 63 4 66 185 368 487 1.59e-11 67.4
MS.gene049964.t1 AT3G49670 47.674 86 37 3 85 170 793 870 1.64e-11 67.4
MS.gene049964.t1 AT4G29990 39.535 86 44 1 85 170 674 751 1.66e-11 67.4
MS.gene049964.t1 AT5G62710 43.678 87 40 2 76 162 406 483 1.69e-11 67.0
MS.gene049964.t1 AT5G65700 47.674 86 37 3 85 170 797 874 1.90e-11 67.4
MS.gene049964.t1 AT5G65700 47.674 86 37 3 85 170 797 874 1.90e-11 67.4
MS.gene049964.t1 AT2G31880 42.353 85 41 2 85 169 466 542 1.99e-11 67.0
MS.gene049964.t1 AT4G33430 37.209 129 63 4 66 185 415 534 2.02e-11 67.0
MS.gene049964.t1 AT3G24240 41.379 87 43 2 85 171 896 974 2.54e-11 67.0
MS.gene049964.t1 AT1G69270 33.628 113 63 2 85 194 362 465 3.01e-11 66.2
MS.gene049964.t1 AT1G21590 31.395 172 90 5 85 240 511 670 3.93e-11 66.2
MS.gene049964.t1 AT1G21590 31.395 172 90 5 85 240 471 630 4.66e-11 65.9
MS.gene049964.t1 AT3G09010 37.190 121 64 3 77 194 141 252 5.05e-11 64.3
MS.gene049964.t1 AT5G16000 44.872 78 34 2 85 162 412 480 5.10e-11 65.5
MS.gene049964.t1 AT1G71830 38.462 104 52 3 85 185 406 500 5.94e-11 65.5
MS.gene049964.t1 AT4G28490 41.860 86 44 2 85 170 796 875 8.95e-11 65.1
MS.gene049964.t1 AT1G55610 37.209 86 46 1 77 162 956 1033 9.70e-11 65.1
MS.gene049964.t1 AT1G55610 37.209 86 46 1 77 162 956 1033 9.70e-11 65.1
MS.gene049964.t1 AT3G09010 37.190 121 64 3 77 194 141 252 9.89e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATGCATGAATTTGTTTC+AGG 0.157522 5.3:-52372194 MS.gene049964:CDS
TTGTGGGTCAAGGGAGTAAT+TGG 0.187742 5.3:-52369015 MS.gene049964:CDS
GAGCTTGTTGTAGCTGATTT+TGG 0.218053 5.3:-52372223 MS.gene049964:CDS
GTGGCAGGTGAACTGGATTT+TGG 0.225336 5.3:+52369473 None:intergenic
ACATTGCATAATTTGTTCTA+TGG 0.225974 5.3:-52373193 MS.gene049964:CDS
ACACCAATGGCCACACTCTA+AGG 0.228478 5.3:+52368138 None:intergenic
TGGAATCTCGCCCGGCTAAA+AGG 0.249532 5.3:-52367956 MS.gene049964:CDS
CATACTTGTTGATGACAATT+TGG 0.266224 5.3:-52372245 MS.gene049964:CDS
AGTGACAGGTGAACTGGATT+TGG 0.272410 5.3:+52368808 None:intergenic
GGTGGCATTCCTTCAGAAAT+TGG 0.279254 5.3:-52373142 MS.gene049964:CDS
CTCAACCTTTAGAGAACATT+TGG 0.286183 5.3:-52368847 MS.gene049964:CDS
AATGAAGAAGAGTATTTAGA+TGG 0.296431 5.3:-52367671 MS.gene049964:CDS
TCATCAACAAGTATGTTCTT+TGG 0.326650 5.3:+52372253 None:intergenic
GCACGATGAAAGAAATTTCC+TGG 0.343177 5.3:+52372150 None:intergenic
AAGAATAGGTCAAGAGATTA+TGG 0.348304 5.3:-52368016 MS.gene049964:CDS
GAGCAGGTGCTGGGAAATCT+AGG 0.351586 5.3:-52369087 MS.gene049964:intron
AGGTTTGCTGCTATCTGAAA+TGG 0.359406 5.3:+52368964 None:intergenic
AGGTTTGCTGCTACATGAAA+TGG 0.369128 5.3:+52368868 None:intergenic
AGGTTTGGTGGCAGGTGAAC+TGG 0.371066 5.3:+52369466 None:intergenic
GTGACAGGTGAACTGGATTT+GGG 0.371369 5.3:+52368809 None:intergenic
GGATTGAATATGAGTACTAA+TGG 0.382986 5.3:-52373172 MS.gene049964:CDS
TGTGGCCATTGGTGTTTAGA+TGG 0.386812 5.3:-52368130 MS.gene049964:CDS
GGTTGTTGAGGTTTGGTGGC+AGG 0.395076 5.3:+52369458 None:intergenic
TGAGATAGTGGATGAAATAA+AGG 0.396209 5.3:-52367993 MS.gene049964:CDS
TTCCTCACCACCATCATTCA+TGG 0.414204 5.3:-52372966 MS.gene049964:CDS
TCGTGCGTTGTTGGTACCCC+TGG 0.417044 5.3:-52372133 MS.gene049964:CDS
AGGTTCAGTGACAGGTGAAC+TGG 0.419885 5.3:+52368802 None:intergenic
CGGAAAGTTGCCAGGGTTGA+AGG 0.422556 5.3:-52369566 MS.gene049964:CDS
CAACATCTCGGAAAGTTGCC+AGG 0.423381 5.3:-52369574 MS.gene049964:CDS
ATCGATAGGTTGTTGAGGTT+TGG 0.425658 5.3:+52369451 None:intergenic
GCCGGAATTATCGATGCTCT+TGG 0.430845 5.3:-52373073 MS.gene049964:CDS
ATGATCATATATTCAAGAAT+AGG 0.433653 5.3:-52368030 MS.gene049964:CDS
TTTCTTTCATCGTGCGTTGT+TGG 0.433825 5.3:-52372142 MS.gene049964:CDS
TCCAAGAGCATCGATAATTC+CGG 0.436139 5.3:+52373072 None:intergenic
TCAATCCAAATGTTCTCTAA+AGG 0.441547 5.3:+52368842 None:intergenic
CCTTCAGAAATTGGCTGGCT+AGG 0.444083 5.3:-52373133 MS.gene049964:CDS
AAGAGATTATGGTGAGATAG+TGG 0.447026 5.3:-52368005 MS.gene049964:CDS
TTCAGTGGTTCTGTACCATT+CGG 0.447379 5.3:-52373007 MS.gene049964:CDS
CAAATGTTCTCTAAAGGTTG+AGG 0.450102 5.3:+52368848 None:intergenic
GGAATCTCGCCCGGCTAAAA+GGG 0.453309 5.3:-52367955 MS.gene049964:CDS
ATTGTCATCGGATTCAGATT+CGG 0.454106 5.3:+52368670 None:intergenic
CTGAAACAAATTCATGCATA+AGG 0.456501 5.3:+52372195 None:intergenic
CCATTGGTGTTTAGATGGGT+TGG 0.460046 5.3:-52368125 MS.gene049964:intron
TCAGAAAACTTCAAAGGTTG+AGG 0.462330 5.3:+52368944 None:intergenic
GGAAGAGAACGCTTCATTTG+AGG 0.463437 5.3:-52369504 MS.gene049964:CDS
ACGTCTCGCTGCACCATTGG+TGG 0.470037 5.3:+52372280 None:intergenic
GGTTGTTGAGGTTCAGTGAC+AGG 0.478915 5.3:+52368794 None:intergenic
TTGACGTCTCGCTGCACCAT+TGG 0.486104 5.3:+52372277 None:intergenic
AACTTTCAAGCTTTGAGAGA+GGG 0.493403 5.3:-52368991 MS.gene049964:CDS
ACCCCTGGCTATATTGCTCC+AGG 0.495514 5.3:-52372118 MS.gene049964:intron
ATGAGTACTAATGGATTGAC+AGG 0.496555 5.3:-52373163 MS.gene049964:CDS
CTTATAGTTATTCTGAAACC+AGG 0.497861 5.3:-52372168 MS.gene049964:CDS
GCATTCCTTCAGAAATTGGC+TGG 0.497911 5.3:-52373138 MS.gene049964:CDS
TAAAGGTAGTGCCTTGGAAG+TGG 0.499444 5.3:-52367976 MS.gene049964:CDS
GTGGCCATTGGTGTTTAGAT+GGG 0.501968 5.3:-52368129 MS.gene049964:CDS
TTTGAAATCAATTTGAGAGA+AGG 0.507541 5.3:+52369533 None:intergenic
GATAGGTTGTTGAGGTTTGG+TGG 0.513763 5.3:+52369454 None:intergenic
TCTTCCTCTTCCTTCAACCC+TGG 0.519455 5.3:+52369556 None:intergenic
TTACCTGGAGCAATATAGCC+AGG 0.520551 5.3:+52372115 None:intergenic
CAATACCTTTGCTACGGACT+CGG 0.527612 5.3:+52369219 None:intergenic
AAAATTACATGAACGCATGA+TGG 0.532452 5.3:-52368699 MS.gene049964:CDS
AATTCCGGCTAAATTGTTCA+AGG 0.532865 5.3:+52373087 None:intergenic
ATGAAATAAAGGTAGTGCCT+TGG 0.546666 5.3:-52367982 MS.gene049964:CDS
TGTGGGTCAAGGGAGTAATT+GGG 0.548813 5.3:-52369014 MS.gene049964:CDS
ACCAATCGCCACTCTCCACC+AGG 0.549217 5.3:-52369374 MS.gene049964:intron
TGCTGGTCAGAAAACTTCAA+AGG 0.549886 5.3:+52368938 None:intergenic
CACCAGCTATAACGTTCTGC+TGG 0.550137 5.3:+52368921 None:intergenic
ATTTCTTACAATCTCTTCAG+TGG 0.550374 5.3:-52373022 MS.gene049964:CDS
AGGTGAACTGGATTTGGGAG+AGG 0.552907 5.3:+52368814 None:intergenic
GGAATTATCGATGCTCTTGG+AGG 0.552929 5.3:-52373070 MS.gene049964:CDS
CACCAATGGCCACACTCTAA+GGG 0.556686 5.3:+52368139 None:intergenic
GAATAGGAATTGCAACATCT+CGG 0.558259 5.3:-52369586 MS.gene049964:intron
GTTGCCAGGGTTGAAGGAAG+AGG 0.559344 5.3:-52369560 MS.gene049964:CDS
GACCAGCAGAACGTTATAGC+TGG 0.560883 5.3:-52368923 MS.gene049964:CDS
TACGAATGGTATTGTGATCG+TGG 0.561716 5.3:-52367917 MS.gene049964:CDS
TCATCATTGAGAGGTTGTTG+AGG 0.561775 5.3:+52368782 None:intergenic
ACGTTATAGCTGGTGGTCAA+CGG 0.563514 5.3:-52368913 MS.gene049964:CDS
TGAAAACAATACCTTTGCTA+CGG 0.565366 5.3:+52369213 None:intergenic
CTTGGAAGTGGAATCTCGCC+CGG 0.567496 5.3:-52367964 MS.gene049964:CDS
GGCCCTTAGAGTGTGGCCAT+TGG 0.568890 5.3:-52368141 MS.gene049964:CDS
TTACGATTGTATTCCACCAA+TGG 0.572344 5.3:-52372293 MS.gene049964:CDS
ATATCCTTGAACAATTTAGC+CGG 0.574114 5.3:-52373091 MS.gene049964:CDS
ATGAAGAAGAGTATTTAGAT+GGG 0.575354 5.3:-52367670 MS.gene049964:CDS
AGAGGATTACCCATGAATGA+TGG 0.575668 5.3:+52372956 None:intergenic
GACCCACAACTAAAATATTG+TGG 0.578353 5.3:+52369029 None:intergenic
ACTGTTTGTGCTAGTACAGA+TGG 0.581049 5.3:-52367710 MS.gene049964:CDS
CAAATTGATTTCAAACTCTG+AGG 0.581442 5.3:-52369525 MS.gene049964:CDS
GCACTGCATACCATTGTCAT+CGG 0.581531 5.3:+52368658 None:intergenic
CCACTCCGAGTCCGTAGCAA+AGG 0.581627 5.3:-52369224 MS.gene049964:intron
AATAAACTCATTAGACCGAA+TGG 0.588309 5.3:+52372992 None:intergenic
TCCTCACCACCATCATTCAT+GGG 0.590306 5.3:-52372965 MS.gene049964:intron
CGGGCGAGATTCCACTTCCA+AGG 0.590624 5.3:+52367965 None:intergenic
ACCTGGTGGAGAGTGGCGAT+TGG 0.592984 5.3:+52369373 None:intergenic
AAAATGTGTCAAGAGACAAA+AGG 0.595990 5.3:-52367894 MS.gene049964:intron
AGCAGGTGCTGGGAAATCTA+GGG 0.597989 5.3:-52369086 MS.gene049964:intron
GAAAGTTACCTGGTGGAGAG+TGG 0.601861 5.3:+52369366 None:intergenic
TTAGATCGATCAGAAGGGAG+TGG 0.604132 5.3:+52369425 None:intergenic
TACCTGGAGCAATATAGCCA+GGG 0.606559 5.3:+52372116 None:intergenic
GGTGAATCGATAGGTTGTTG+AGG 0.609852 5.3:+52369446 None:intergenic
TACCATTCGTAGAAAAGACA+TGG 0.613855 5.3:+52367929 None:intergenic
CCTAGCCAGCCAATTTCTGA+AGG 0.616992 5.3:+52373133 None:intergenic
AACATCTCGGAAAGTTGCCA+GGG 0.619231 5.3:-52369573 MS.gene049964:CDS
AGGTCTTGTTTCATTAACTG+AGG 0.619895 5.3:-52373050 MS.gene049964:CDS
GAACTTTCAAGCTTTGAGAG+AGG 0.626782 5.3:-52368992 MS.gene049964:CDS
ACAACCTCTCAATGATGAGG+AGG 0.629580 5.3:-52368777 MS.gene049964:CDS
GAAGGGAGTGGTGAATCGAT+AGG 0.630020 5.3:+52369437 None:intergenic
AAGTCCTCCTCATCATTGAG+AGG 0.631486 5.3:+52368773 None:intergenic
GAGAAAGGGCCCTTAGAGTG+TGG 0.633275 5.3:-52368148 MS.gene049964:intron
CTGTTTGTGCTAGTACAGAT+GGG 0.642062 5.3:-52367709 MS.gene049964:CDS
ACCCATGAATGATGGTGGTG+AGG 0.645468 5.3:+52372964 None:intergenic
CCAACCCATCTAAACACCAA+TGG 0.646405 5.3:+52368125 None:intergenic
CAGCAGAACGTTATAGCTGG+TGG 0.647808 5.3:-52368920 MS.gene049964:CDS
TCAACAACCTCTCAATGATG+AGG 0.649608 5.3:-52368780 MS.gene049964:CDS
GAATCTGAATCCGATGACAA+TGG 0.666926 5.3:-52368668 MS.gene049964:intron
AGTACTAATGGATTGACAGG+TGG 0.667602 5.3:-52373160 MS.gene049964:CDS
CAACGGAGTAATGACAGAGA+GGG 0.679307 5.3:-52368896 MS.gene049964:CDS
ACCTGGAGCAATATAGCCAG+GGG 0.688651 5.3:+52372117 None:intergenic
CCTTTGCTACGGACTCGGAG+TGG 0.691861 5.3:+52369224 None:intergenic
GGATTACCCATGAATGATGG+TGG 0.713377 5.3:+52372959 None:intergenic
TCAACGGAGTAATGACAGAG+AGG 0.714423 5.3:-52368897 MS.gene049964:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAAATAAAAAA+AGG + chr5.3:52372383-52372402 None:intergenic 0.0%
!! AAATAAAAAATGACATAATA+AGG + chr5.3:52368862-52368881 None:intergenic 10.0%
!! GTTAAAAAAATATAAGTATA+TGG - chr5.3:52370329-52370348 MS.gene049964:intron 10.0%
!!! TTTTTTCTTTTAATTTAGAA+TGG - chr5.3:52372503-52372522 MS.gene049964:intron 10.0%
!! AAAAATACTCTAGTATAATA+TGG + chr5.3:52370240-52370259 None:intergenic 15.0%
!! ATATATAAATTCATCGAAAA+TGG - chr5.3:52368433-52368452 MS.gene049964:intron 15.0%
!! ATGAATATTTCAAAAGTTTA+TGG - chr5.3:52369529-52369548 MS.gene049964:CDS 15.0%
!! CAAACAAATATTTAAATCTA+CGG + chr5.3:52369939-52369958 None:intergenic 15.0%
!! TATATTCTATTTGAATGATT+AGG - chr5.3:52369287-52369306 MS.gene049964:intron 15.0%
!! TGAATATTTCAAAAGTTTAT+GGG - chr5.3:52369530-52369549 MS.gene049964:CDS 15.0%
!!! AATACAATTAAAATCCTTTT+TGG + chr5.3:52370066-52370085 None:intergenic 15.0%
!!! ACAAAATATAATTGATTCTA+AGG + chr5.3:52370570-52370589 None:intergenic 15.0%
!!! ATATTATACTAGAGTATTTT+TGG - chr5.3:52370239-52370258 MS.gene049964:intron 15.0%
!!! ATATTGAAATTTTTTTAGGA+AGG + chr5.3:52370765-52370784 None:intergenic 15.0%
!!! GCTTAATTTTATTTTTCTTA+CGG + chr5.3:52370417-52370436 None:intergenic 15.0%
!!! GTACATATTATTATTTTTGA+CGG - chr5.3:52370207-52370226 MS.gene049964:intron 15.0%
!! AAAAAAAATCTCAACTGAAT+CGG + chr5.3:52372529-52372548 None:intergenic 20.0%
!! AAAATGAAGAAAACTAGAAT+AGG + chr5.3:52369399-52369418 None:intergenic 20.0%
!! AAAGAGGTAGTAATTAAAAA+AGG + chr5.3:52368935-52368954 None:intergenic 20.0%
!! AAAGTAGTACTAGTAATTAA+AGG + chr5.3:52372468-52372487 None:intergenic 20.0%
!! AAATGTATTTGAACAAAAAG+AGG - chr5.3:52368103-52368122 MS.gene049964:intron 20.0%
!! AAGGAAAGTTTATATTTAAC+CGG + chr5.3:52370870-52370889 None:intergenic 20.0%
!! ATCGAAATTTGATCAAATAT+TGG - chr5.3:52368377-52368396 MS.gene049964:intron 20.0%
!! ATGATAGAAATGAATTGAAA+AGG - chr5.3:52368064-52368083 MS.gene049964:intron 20.0%
!! ATGATCATATATTCAAGAAT+AGG - chr5.3:52372824-52372843 MS.gene049964:intron 20.0%
!! CGCAATTAAAAAAAAATTGA+AGG + chr5.3:52370158-52370177 None:intergenic 20.0%
!! GAATATTTCAAAAGTTTATG+GGG - chr5.3:52369531-52369550 MS.gene049964:CDS 20.0%
!! TCAAATTACTTGAAAATAGT+TGG + chr5.3:52369121-52369140 None:intergenic 20.0%
!! TCATGAATTTCAATGTAATT+TGG + chr5.3:52369020-52369039 None:intergenic 20.0%
!! TCTAATTAATTAAACAGAGT+TGG + chr5.3:52372431-52372450 None:intergenic 20.0%
!! TGATAGAAATGAATTGAAAA+GGG - chr5.3:52368065-52368084 MS.gene049964:intron 20.0%
!! TGATGCAAATATAATTTAAC+AGG - chr5.3:52369198-52369217 MS.gene049964:intron 20.0%
!! TTGTCCATAAAAAATATGTT+TGG + chr5.3:52370598-52370617 None:intergenic 20.0%
!! TTTCATGCAAAATTTCATAA+AGG + chr5.3:52368462-52368481 None:intergenic 20.0%
!!! AAAGCCAAACATATTTTTTA+TGG - chr5.3:52370591-52370610 MS.gene049964:intron 20.0%
!!! ATTTTTCAATAACGTGATAA+AGG - chr5.3:52370801-52370820 MS.gene049964:intron 20.0%
!!! TGATAAAGGAAGTATTTAAA+GGG - chr5.3:52370815-52370834 MS.gene049964:intron 20.0%
!!! TTCTAGAAAAATAATACACA+AGG + chr5.3:52368809-52368828 None:intergenic 20.0%
! AAAAGAAGAGTTAATTAACC+TGG + chr5.3:52370996-52371015 None:intergenic 25.0%
! AAAATTGTGATGATAGAACT+TGG - chr5.3:52368007-52368026 MS.gene049964:CDS 25.0%
! AAACATAAGGTCAAAGAATA+AGG + chr5.3:52369244-52369263 None:intergenic 25.0%
! AAATGTACAAAAAGGTTTGA+TGG + chr5.3:52372772-52372791 None:intergenic 25.0%
! AATCAATTCTACTACATTGT+TGG + chr5.3:52370498-52370517 None:intergenic 25.0%
! ACTCAATCAAGAATAGAATT+AGG + chr5.3:52371557-52371576 None:intergenic 25.0%
! AGAAAAATGATAAGCTAAAG+AGG + chr5.3:52368951-52368970 None:intergenic 25.0%
! ATAAACATAAAACGATGAGT+TGG + chr5.3:52371050-52371069 None:intergenic 25.0%
! ATACATTTGCTTAAGATAGA+AGG + chr5.3:52368091-52368110 None:intergenic 25.0%
! ATATCTTGATTGATTGGAAT+AGG - chr5.3:52371252-52371271 MS.gene049964:intron 25.0%
! ATCAAGAATAGAATTAGGTT+AGG + chr5.3:52371552-52371571 None:intergenic 25.0%
! ATCAATCAAGATATTAGCAA+AGG + chr5.3:52371246-52371265 None:intergenic 25.0%
! ATCAATTCTACTACATTGTT+GGG + chr5.3:52370497-52370516 None:intergenic 25.0%
! ATTACCGATAACTTTATGAT+CGG + chr5.3:52367984-52368003 None:intergenic 25.0%
! ATTTGTTTGTCTTGAATGTT+TGG - chr5.3:52369950-52369969 MS.gene049964:intron 25.0%
! CAATAATATACCAATCACTT+AGG + chr5.3:52368216-52368235 None:intergenic 25.0%
! CTAAGTGATTGGTATATTAT+TGG - chr5.3:52368214-52368233 MS.gene049964:intron 25.0%
! CTTGCATAAGAAAAATACAT+TGG - chr5.3:52369746-52369765 MS.gene049964:intron 25.0%
! GCAAATATAATTTAACAGGA+GGG - chr5.3:52369202-52369221 MS.gene049964:intron 25.0%
! TCAAGAATAGAATTAGGTTA+GGG + chr5.3:52371551-52371570 None:intergenic 25.0%
! TGAATGAATGATAAATTACC+TGG + chr5.3:52368757-52368776 None:intergenic 25.0%
! TGAATGTGTAATTACCAAAA+AGG - chr5.3:52370049-52370068 MS.gene049964:intron 25.0%
! TGCAAATATAATTTAACAGG+AGG - chr5.3:52369201-52369220 MS.gene049964:intron 25.0%
! TGTTTGTCATGCTTTATAAA+AGG - chr5.3:52369081-52369100 MS.gene049964:CDS 25.0%
! TTGCTAATATCTTGATTGAT+TGG - chr5.3:52371246-52371265 MS.gene049964:intron 25.0%
!! ATCAAACCTTTTTGTACATT+TGG - chr5.3:52372771-52372790 MS.gene049964:intron 25.0%
!! TTTGAAATCAATTTGAGAGA+AGG + chr5.3:52371324-52371343 None:intergenic 25.0%
!! TTTTTATACTTCTTCAAGCA+AGG - chr5.3:52370902-52370921 MS.gene049964:intron 25.0%
!!! AATGAAGAAGAGTATTTAGA+TGG - chr5.3:52372669-52372688 MS.gene049964:intron 25.0%
!!! ACATTGCATAATTTGTTCTA+TGG - chr5.3:52367661-52367680 MS.gene049964:CDS 25.0%
!!! AGTTTTCTTCATTTTTCTAC+AGG - chr5.3:52369404-52369423 MS.gene049964:CDS 25.0%
!!! ATATAATTGATTCTAAGGCT+TGG + chr5.3:52370565-52370584 None:intergenic 25.0%
!!! ATGAAGAAGAGTATTTAGAT+GGG - chr5.3:52372670-52372689 MS.gene049964:intron 25.0%
!!! GATAAAGGAAGTATTTAAAG+GGG - chr5.3:52370816-52370835 MS.gene049964:intron 25.0%
!!! GTGATAAAGGAAGTATTTAA+AGG - chr5.3:52370814-52370833 MS.gene049964:intron 25.0%
!!! TGTATTTTTTTTATTGGAGC+AGG - chr5.3:52371751-52371770 MS.gene049964:intron 25.0%
!!! TTTTTAATTCAGTTTGTCTG+CGG - chr5.3:52373055-52373074 MS.gene049964:CDS 25.0%
AAAATGTGTCAAGAGACAAA+AGG - chr5.3:52372960-52372979 MS.gene049964:intron 30.0%
AAAATTACATGAACGCATGA+TGG - chr5.3:52372155-52372174 MS.gene049964:CDS 30.0%
AAGAATAGGTCAAGAGATTA+TGG - chr5.3:52372838-52372857 MS.gene049964:intron 30.0%
AATAAACTCATTAGACCGAA+TGG + chr5.3:52367865-52367884 None:intergenic 30.0%
AATTCAAACAACTGAAAGAG+AGG + chr5.3:52367919-52367938 None:intergenic 30.0%
AGAGTATACATATAGGTGAA+AGG + chr5.3:52369649-52369668 None:intergenic 30.0%
AGCATGCTTCACATATAATA+AGG - chr5.3:52370434-52370453 MS.gene049964:intron 30.0%
AGTTCTTGATTAATTGTAGC+AGG - chr5.3:52371095-52371114 MS.gene049964:intron 30.0%
ATATCCTTGAACAATTTAGC+CGG - chr5.3:52367763-52367782 MS.gene049964:intron 30.0%
ATCTCAAACATACGTTATAG+AGG - chr5.3:52370631-52370650 MS.gene049964:intron 30.0%
ATTTCTTACAATCTCTTCAG+TGG - chr5.3:52367832-52367851 MS.gene049964:intron 30.0%
CACATCAGAAATCAATATTG+AGG + chr5.3:52368035-52368054 None:intergenic 30.0%
CTGAAACAAATTCATGCATA+AGG + chr5.3:52368662-52368681 None:intergenic 30.0%
GACCAAGTAATTTAGATGTA+AGG - chr5.3:52368131-52368150 MS.gene049964:CDS 30.0%
GAGTATACATATAGGTGAAA+GGG + chr5.3:52369648-52369667 None:intergenic 30.0%
GATTGGTATATTATTGGCAT+AGG - chr5.3:52368220-52368239 MS.gene049964:intron 30.0%
GGATTGAATATGAGTACTAA+TGG - chr5.3:52367682-52367701 MS.gene049964:CDS 30.0%
GTAGGAAAATAATACACACA+AGG + chr5.3:52372323-52372342 None:intergenic 30.0%
GTAGTACTAGTAATTAAAGG+AGG + chr5.3:52372465-52372484 None:intergenic 30.0%
GTCCTTACATCTAAATTACT+TGG + chr5.3:52368136-52368155 None:intergenic 30.0%
GTTAGAGTGCAAAAAACATA+AGG + chr5.3:52369257-52369276 None:intergenic 30.0%
TAAAGAAGGTTGAATTTGGA+TGG - chr5.3:52368293-52368312 MS.gene049964:intron 30.0%
TAAATTATGCACAATGCTTG+CGG + chr5.3:52369910-52369929 None:intergenic 30.0%
TAGTCATGTAAGACTTTGTT+TGG - chr5.3:52370003-52370022 MS.gene049964:intron 30.0%
TATCTTACTTAGTACCTGTT+TGG + chr5.3:52370670-52370689 None:intergenic 30.0%
TCAACCGATCATAAAGTTAT+CGG - chr5.3:52367977-52367996 MS.gene049964:CDS 30.0%
TCAATCCAAATGTTCTCTAA+AGG + chr5.3:52372015-52372034 None:intergenic 30.0%
TCATCAACAAGTATGTTCTT+TGG + chr5.3:52368604-52368623 None:intergenic 30.0%
TGAAAACAATACCTTTGCTA+CGG + chr5.3:52371644-52371663 None:intergenic 30.0%
TGAATACAATACCATTAACG+TGG + chr5.3:52371193-52371212 None:intergenic 30.0%
TGTATTTGAACAAAAAGAGG+AGG - chr5.3:52368106-52368125 MS.gene049964:intron 30.0%
TTCTCTTTCAATTACCAAGT+TGG + chr5.3:52369694-52369713 None:intergenic 30.0%
TTTCAAATATTCCAAACCAG+AGG + chr5.3:52371528-52371547 None:intergenic 30.0%
! AAGAAATCTAAGATGACAAG+TGG + chr5.3:52372352-52372371 None:intergenic 30.0%
! AGTTGAGAGAGTATACATAT+AGG + chr5.3:52369656-52369675 None:intergenic 30.0%
! CAAATTGATTTCAAACTCTG+AGG - chr5.3:52371329-52371348 MS.gene049964:intron 30.0%
! CTTATGCATGAATTTGTTTC+AGG - chr5.3:52368660-52368679 MS.gene049964:intron 30.0%
! GAACTTTGTAGAAGTATAGT+AGG + chr5.3:52369052-52369071 None:intergenic 30.0%
! TTAGGAAGGCAAGTATTTTA+AGG + chr5.3:52370751-52370770 None:intergenic 30.0%
! TTCTATGTTCTGTTTTCATG+TGG - chr5.3:52373116-52373135 MS.gene049964:CDS 30.0%
! TTCTTTTAGATCGATCAGAA+GGG + chr5.3:52371437-52371456 None:intergenic 30.0%
! TTTCTTTTAGATCGATCAGA+AGG + chr5.3:52371438-52371457 None:intergenic 30.0%
!! ACTTTGAAGAGTTGGATTTT+AGG - chr5.3:52372277-52372296 MS.gene049964:CDS 30.0%
!! ATCGTATGATTTTAGTCTAG+CGG - chr5.3:52372609-52372628 MS.gene049964:intron 30.0%
!! CATACTTGTTGATGACAATT+TGG - chr5.3:52368609-52368628 MS.gene049964:intron 30.0%
!! CTTATAGTTATTCTGAAACC+AGG - chr5.3:52368686-52368705 MS.gene049964:CDS 30.0%
!! CTTTGAAGAGTTGGATTTTA+GGG - chr5.3:52372278-52372297 MS.gene049964:CDS 30.0%
!! TCTCACTTTTGAACAAATAG+CGG - chr5.3:52372122-52372141 MS.gene049964:CDS 30.0%
!! TGAGATAGTGGATGAAATAA+AGG - chr5.3:52372861-52372880 MS.gene049964:intron 30.0%
!!! AATATTTTAGTTGTGGGTCA+AGG - chr5.3:52371829-52371848 MS.gene049964:intron 30.0%
!!! ATATTTTAGTTGTGGGTCAA+GGG - chr5.3:52371830-52371849 MS.gene049964:intron 30.0%
!!! CCAACTGTTTTTGTTTTACT+CGG + chr5.3:52370357-52370376 None:intergenic 30.0%
!!! GACCACAATATTTTAGTTGT+GGG - chr5.3:52371823-52371842 MS.gene049964:intron 30.0%
!!! TGACCACAATATTTTAGTTG+TGG - chr5.3:52371822-52371841 MS.gene049964:intron 30.0%
!!! TGTCTTGAATGTTTGGTTTT+AGG - chr5.3:52369957-52369976 MS.gene049964:intron 30.0%
AAAAAACGAGTCCACGTTAA+TGG - chr5.3:52371179-52371198 MS.gene049964:intron 35.0%
AACGAAATTGAAGTCCTTAG+GGG - chr5.3:52368346-52368365 MS.gene049964:intron 35.0%
AACTTCCAAACTCACAGATA+AGG + chr5.3:52369567-52369586 None:intergenic 35.0%
AAGAGATTATGGTGAGATAG+TGG - chr5.3:52372849-52372868 MS.gene049964:intron 35.0%
AAGCTTGTATTCCTAACTTC+TGG + chr5.3:52370530-52370549 None:intergenic 35.0%
AATGCCTTCTCAAAACAGTT+GGG - chr5.3:52369458-52369477 MS.gene049964:CDS 35.0%
AATTCCGGCTAAATTGTTCA+AGG + chr5.3:52367770-52367789 None:intergenic 35.0%
ACAAACCTGTTGACAAATTG+TGG + chr5.3:52368269-52368288 None:intergenic 35.0%
AGCACATCAGCAAACTTTAA+AGG + chr5.3:52369363-52369382 None:intergenic 35.0%
AGCTTGTATTCCTAACTTCT+GGG + chr5.3:52370529-52370548 None:intergenic 35.0%
ATAAAAACGCGAGGGAAATA+AGG + chr5.3:52370889-52370908 None:intergenic 35.0%
ATGAAATAAAGGTAGTGCCT+TGG - chr5.3:52372872-52372891 MS.gene049964:intron 35.0%
ATTGTCATCGGATTCAGATT+CGG + chr5.3:52372187-52372206 None:intergenic 35.0%
ATTTAGATGTAAGGACCGTA+TGG - chr5.3:52368140-52368159 MS.gene049964:CDS 35.0%
ATTTGAACAAAAAGAGGAGG+TGG - chr5.3:52368109-52368128 MS.gene049964:intron 35.0%
CAAAAGTTTATGGGGAAAAG+TGG - chr5.3:52369539-52369558 MS.gene049964:CDS 35.0%
CAACAAACAACAACGAAATC+CGG - chr5.3:52370848-52370867 MS.gene049964:intron 35.0%
CAACGAAATTGAAGTCCTTA+GGG - chr5.3:52368345-52368364 MS.gene049964:intron 35.0%
CAAGTACCTTATGAGAAAGA+GGG + chr5.3:52369791-52369810 None:intergenic 35.0%
CCGAGTAAAACAAAAACAGT+TGG - chr5.3:52370354-52370373 MS.gene049964:intron 35.0%
CTACATAGAACCTAAGTGAT+TGG - chr5.3:52368203-52368222 MS.gene049964:intron 35.0%
CTCTCTCAACTTCAGAATAT+TGG - chr5.3:52369665-52369684 MS.gene049964:intron 35.0%
GAATAGGAATTGCAACATCT+CGG - chr5.3:52371268-52371287 MS.gene049964:intron 35.0%
GACCCACAACTAAAATATTG+TGG + chr5.3:52371828-52371847 None:intergenic 35.0%
GCTGTAAAGAAGGTTGAATT+TGG - chr5.3:52368289-52368308 MS.gene049964:intron 35.0%
GTTCGGTTTAATATAGCTGT+TGG - chr5.3:52368511-52368530 MS.gene049964:intron 35.0%
TACCATTCGTAGAAAAGACA+TGG + chr5.3:52372928-52372947 None:intergenic 35.0%
TATCTTCCCTCTTTCTCATA+AGG - chr5.3:52369782-52369801 MS.gene049964:intron 35.0%
TCAACGAAATTGAAGTCCTT+AGG - chr5.3:52368344-52368363 MS.gene049964:intron 35.0%
TCAAGTACCTTATGAGAAAG+AGG + chr5.3:52369792-52369811 None:intergenic 35.0%
TCAGAAAACTTCAAAGGTTG+AGG + chr5.3:52371913-52371932 None:intergenic 35.0%
TGATCAAATATTGGAGCTAC+TGG - chr5.3:52368386-52368405 MS.gene049964:intron 35.0%
TTACGATTGTATTCCACCAA+TGG - chr5.3:52368561-52368580 MS.gene049964:intron 35.0%
TTCTTCTAATCCCAGAAGTT+AGG - chr5.3:52370516-52370535 MS.gene049964:intron 35.0%
TTTAGATGTAAGGACCGTAT+GGG - chr5.3:52368141-52368160 MS.gene049964:CDS 35.0%
! AAAACGATGAGTTGGAGAAT+TGG + chr5.3:52371042-52371061 None:intergenic 35.0%
! AATCCGATCATTTTCCCATA+CGG + chr5.3:52368158-52368177 None:intergenic 35.0%
! ATCATCTTTGAAAGCAGCTA+GGG - chr5.3:52371142-52371161 MS.gene049964:intron 35.0%
! CAAATGTTCTCTAAAGGTTG+AGG + chr5.3:52372009-52372028 None:intergenic 35.0%
! CTCAACCTTTAGAGAACATT+TGG - chr5.3:52372007-52372026 MS.gene049964:intron 35.0%
! GAAGAAGTATAAAAACGCGA+GGG + chr5.3:52370897-52370916 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + chr5.3:52371128-52371147 None:intergenic 35.0%
! TACTGGATTAGAAAGGACTA+TGG - chr5.3:52368403-52368422 MS.gene049964:intron 35.0%
! TGAAGAAGTATAAAAACGCG+AGG + chr5.3:52370898-52370917 None:intergenic 35.0%
!! AACTTTCAAGCTTTGAGAGA+GGG - chr5.3:52371863-52371882 MS.gene049964:intron 35.0%
!! AGGTCTTGTTTCATTAACTG+AGG - chr5.3:52367804-52367823 MS.gene049964:intron 35.0%
!! ATGAGTACTAATGGATTGAC+AGG - chr5.3:52367691-52367710 MS.gene049964:CDS 35.0%
!! GGATTTCGTTGTTGTTTGTT+GGG + chr5.3:52370849-52370868 None:intergenic 35.0%
!! GTTGTTTCTGTTCTGAGAAA+GGG - chr5.3:52372692-52372711 MS.gene049964:intron 35.0%
!! TCACAATCGATTTTGTGCAA+TGG - chr5.3:52369314-52369333 MS.gene049964:intron 35.0%
!! TCGGTTGATTTGTAGACATA+TGG + chr5.3:52367965-52367984 None:intergenic 35.0%
!! TGTGTGTTTTTCGACTTCAA+AGG + chr5.3:52369620-52369639 None:intergenic 35.0%
AAACCGAACATTCCACACTA+AGG + chr5.3:52368500-52368519 None:intergenic 40.0%
AAGAGATCGCAGAGATTCTT+AGG + chr5.3:52370958-52370977 None:intergenic 40.0%
ACAGGTTTGTGCTGTAAAGA+AGG - chr5.3:52368279-52368298 MS.gene049964:intron 40.0%
ACATTCGCAAGTCAAAGTCA+TGG - chr5.3:52372575-52372594 MS.gene049964:intron 40.0%
ACCTTCAAGCCAATGAGATA+TGG - chr5.3:52369838-52369857 MS.gene049964:intron 40.0%
ACTGTTTGTGCTAGTACAGA+TGG - chr5.3:52373144-52373163 MS.gene049964:CDS 40.0%
AGAAAGAGGGAAGATAAGTC+TGG + chr5.3:52369778-52369797 None:intergenic 40.0%
AGAGATCGCAGAGATTCTTA+GGG + chr5.3:52370957-52370976 None:intergenic 40.0%
AGAGGATTACCCATGAATGA+TGG + chr5.3:52367901-52367920 None:intergenic 40.0%
ATCGATAGGTTGTTGAGGTT+TGG + chr5.3:52371406-52371425 None:intergenic 40.0%
ATGGACAAGTCAGTTGAGAT+TGG - chr5.3:52368982-52369001 MS.gene049964:CDS 40.0%
ATGGTGCAACAAGGTATGAA+GGG - chr5.3:52369857-52369876 MS.gene049964:intron 40.0%
CAAAGCCACAATTTGTCAAC+AGG - chr5.3:52368261-52368280 MS.gene049964:intron 40.0%
CAATGAGATATGGTGCAACA+AGG - chr5.3:52369848-52369867 MS.gene049964:intron 40.0%
CAATGCCTTCTCAAAACAGT+TGG - chr5.3:52369457-52369476 MS.gene049964:CDS 40.0%
CAGAATATTGGAAGCCAACT+TGG - chr5.3:52369677-52369696 MS.gene049964:intron 40.0%
CATTCGCAAGTCAAAGTCAT+GGG - chr5.3:52372576-52372595 MS.gene049964:intron 40.0%
CCAGTGCCAAATGTACAAAA+AGG + chr5.3:52372780-52372799 None:intergenic 40.0%
CTGTTTGTGCTAGTACAGAT+GGG - chr5.3:52373145-52373164 MS.gene049964:CDS 40.0%
CTTGTTGCACCATATCTCAT+TGG + chr5.3:52369850-52369869 None:intergenic 40.0%
GAAGAAAAGCGAAAGTTACC+TGG + chr5.3:52371501-52371520 None:intergenic 40.0%
GAATCTGAATCCGATGACAA+TGG - chr5.3:52372186-52372205 MS.gene049964:CDS 40.0%
GCAAGGTTTCTTCACGTTAA+AGG - chr5.3:52370919-52370938 MS.gene049964:intron 40.0%
GCACGATGAAAGAAATTTCC+TGG + chr5.3:52368707-52368726 None:intergenic 40.0%
GGAAGTTGGGAATTGATGTT+TGG + chr5.3:52369889-52369908 None:intergenic 40.0%
GGTTTCTTCACGTTAAAGGA+AGG - chr5.3:52370923-52370942 MS.gene049964:intron 40.0%
GTACTTGAGTTCTGCATGAT+CGG - chr5.3:52369804-52369823 MS.gene049964:intron 40.0%
TACGAATGGTATTGTGATCG+TGG - chr5.3:52372937-52372956 MS.gene049964:intron 40.0%
TAGCAAAGGCAGTCATTCAT+TGG + chr5.3:52371232-52371251 None:intergenic 40.0%
TATGGTGCAACAAGGTATGA+AGG - chr5.3:52369856-52369875 MS.gene049964:intron 40.0%
TCAACAACCTCTCAATGATG+AGG - chr5.3:52372074-52372093 MS.gene049964:intron 40.0%
TCACCTTAATGAGCTAGTGT+TGG - chr5.3:52368177-52368196 MS.gene049964:intron 40.0%
TCATCATTGAGAGGTTGTTG+AGG + chr5.3:52372075-52372094 None:intergenic 40.0%
TGCTGGTCAGAAAACTTCAA+AGG + chr5.3:52371919-52371938 None:intergenic 40.0%
TTCAGTTTGTCTGCGGTATT+TGG - chr5.3:52373062-52373081 MS.gene049964:CDS 40.0%
TTGGATGGAGCAAGTAAAAG+TGG - chr5.3:52368308-52368327 MS.gene049964:intron 40.0%
TTTCTTCTTCTCCTCTGGTT+TGG - chr5.3:52371514-52371533 MS.gene049964:intron 40.0%
TTTCTTTCATCGTGCGTTGT+TGG - chr5.3:52368712-52368731 MS.gene049964:CDS 40.0%
! ATTATTGGCATAGGAGCACA+TGG - chr5.3:52368229-52368248 MS.gene049964:intron 40.0%
! ATTGGTGGTTGCATTAGGTT+AGG + chr5.3:52371024-52371043 None:intergenic 40.0%
! CATCATCTTTGAAAGCAGCT+AGG - chr5.3:52371141-52371160 MS.gene049964:intron 40.0%
! CCTTTTTGTACATTTGGCAC+TGG - chr5.3:52372777-52372796 MS.gene049964:intron 40.0%
! GATTTTGTGCAATGGTAGAG+AGG - chr5.3:52369322-52369341 MS.gene049964:intron 40.0%
! GTCCATGTCTTTTCTACGAA+TGG - chr5.3:52372923-52372942 MS.gene049964:intron 40.0%
! TGCACATGACTTTGAAGAGT+TGG - chr5.3:52372269-52372288 MS.gene049964:CDS 40.0%
! TTCAGTGGTTCTGTACCATT+CGG - chr5.3:52367847-52367866 MS.gene049964:intron 40.0%
! TTGGAGCTACTGGATTAGAA+AGG - chr5.3:52368396-52368415 MS.gene049964:intron 40.0%
! TTGGTGGTTGCATTAGGTTA+GGG + chr5.3:52371023-52371042 None:intergenic 40.0%
! TTTTTATTGGAGCAGGTGCT+GGG - chr5.3:52371758-52371777 MS.gene049964:intron 40.0%
!! ACCATATCTCATTGGCTTGA+AGG + chr5.3:52369842-52369861 None:intergenic 40.0%
!! ACTGGTTTGGGTTATTCTGT+AGG - chr5.3:52372795-52372814 MS.gene049964:intron 40.0%
!! AGGTTTGCTGCTACATGAAA+TGG + chr5.3:52371989-52372008 None:intergenic 40.0%
!! AGGTTTGCTGCTATCTGAAA+TGG + chr5.3:52371893-52371912 None:intergenic 40.0%
!! AGTACTAATGGATTGACAGG+TGG - chr5.3:52367694-52367713 MS.gene049964:CDS 40.0%
!! CGGATTTCGTTGTTGTTTGT+TGG + chr5.3:52370850-52370869 None:intergenic 40.0%
!! GAACTTTCAAGCTTTGAGAG+AGG - chr5.3:52371862-52371881 MS.gene049964:intron 40.0%
!! GGTTGTTTCTGTTCTGAGAA+AGG - chr5.3:52372691-52372710 MS.gene049964:intron 40.0%
!! GTGTTTAGATGGGTTGGTAT+TGG - chr5.3:52372735-52372754 MS.gene049964:intron 40.0%
!! TAAAGTTTGCTGATGTGCTC+TGG - chr5.3:52369364-52369383 MS.gene049964:intron 40.0%
!! TCCAAGAGCATCGATAATTC+CGG + chr5.3:52367785-52367804 None:intergenic 40.0%
!! TGTACATTTGGCACTGGTTT+GGG - chr5.3:52372783-52372802 MS.gene049964:intron 40.0%
!! TTGTACATTTGGCACTGGTT+TGG - chr5.3:52372782-52372801 MS.gene049964:intron 40.0%
!!! ACATCCCAACTGTTTTGAGA+AGG + chr5.3:52369465-52369484 None:intergenic 40.0%
!!! GAGCTTGTTGTAGCTGATTT+TGG - chr5.3:52368631-52368650 MS.gene049964:intron 40.0%
!!! TTTTTTATTGGAGCAGGTGC+TGG - chr5.3:52371757-52371776 MS.gene049964:intron 40.0%
AACAGTTGGGATGTTTGCAG+AGG - chr5.3:52369471-52369490 MS.gene049964:CDS 45.0%
AACATCTCGGAAAGTTGCCA+GGG - chr5.3:52371281-52371300 MS.gene049964:intron 45.0%
AAGTCCTCCTCATCATTGAG+AGG + chr5.3:52372084-52372103 None:intergenic 45.0%
ACAACCTCTCAATGATGAGG+AGG - chr5.3:52372077-52372096 MS.gene049964:intron 45.0%
AGACAAAAGGTGACCTCGTT+GGG - chr5.3:52372973-52372992 MS.gene049964:CDS 45.0%
AGTGACAGGTGAACTGGATT+TGG + chr5.3:52372049-52372068 None:intergenic 45.0%
CAACGGAGTAATGACAGAGA+GGG - chr5.3:52371958-52371977 MS.gene049964:intron 45.0%
CAATACCTTTGCTACGGACT+CGG + chr5.3:52371638-52371657 None:intergenic 45.0%
CACACAGAAAAAACCCAACG+AGG + chr5.3:52372989-52373008 None:intergenic 45.0%
CAGCCTTAGTGTGGAATGTT+CGG - chr5.3:52368494-52368513 MS.gene049964:intron 45.0%
CCAACCCATCTAAACACCAA+TGG + chr5.3:52372732-52372751 None:intergenic 45.0%
CCTCCAACACTAGCTCATTA+AGG + chr5.3:52368183-52368202 None:intergenic 45.0%
CGCAGAGATTCTTAGGGTTA+GGG + chr5.3:52370951-52370970 None:intergenic 45.0%
GAAAAGCGAAAGTTACCTGG+TGG + chr5.3:52371498-52371517 None:intergenic 45.0%
GATAGGTTGTTGAGGTTTGG+TGG + chr5.3:52371403-52371422 None:intergenic 45.0%
GATGACAAGTGGACGATTGT+AGG + chr5.3:52372341-52372360 None:intergenic 45.0%
GCAACAAGGTATGAAGGGTA+TGG - chr5.3:52369862-52369881 MS.gene049964:intron 45.0%
GCACTGCATACCATTGTCAT+CGG + chr5.3:52372199-52372218 None:intergenic 45.0%
GCATTCCTTCAGAAATTGGC+TGG - chr5.3:52367716-52367735 MS.gene049964:CDS 45.0%
GGAAGAGAACGCTTCATTTG+AGG - chr5.3:52371350-52371369 MS.gene049964:intron 45.0%
GGAATTATCGATGCTCTTGG+AGG - chr5.3:52367784-52367803 MS.gene049964:intron 45.0%
GGACCGTATGGGAAAATGAT+CGG - chr5.3:52368152-52368171 MS.gene049964:intron 45.0%
GGATTACCCATGAATGATGG+TGG + chr5.3:52367898-52367917 None:intergenic 45.0%
GGTGAATCGATAGGTTGTTG+AGG + chr5.3:52371411-52371430 None:intergenic 45.0%
GGTGGCATTCCTTCAGAAAT+TGG - chr5.3:52367712-52367731 MS.gene049964:CDS 45.0%
GTGACAGGTGAACTGGATTT+GGG + chr5.3:52372048-52372067 None:intergenic 45.0%
TAAAGGTAGTGCCTTGGAAG+TGG - chr5.3:52372878-52372897 MS.gene049964:intron 45.0%
TACCTGGAGCAATATAGCCA+GGG + chr5.3:52368741-52368760 None:intergenic 45.0%
TCAACGGAGTAATGACAGAG+AGG - chr5.3:52371957-52371976 MS.gene049964:intron 45.0%
TCCTCACCACCATCATTCAT+GGG - chr5.3:52367889-52367908 MS.gene049964:intron 45.0%
TCGCAGAGATTCTTAGGGTT+AGG + chr5.3:52370952-52370971 None:intergenic 45.0%
TGAGCCTAATAGCTCACTGT+CGG + chr5.3:52369431-52369450 None:intergenic 45.0%
TGCGGTATTTGGCTATTCTG+TGG - chr5.3:52373073-52373092 MS.gene049964:CDS 45.0%
TGGTGCCTTATCTGTGAGTT+TGG - chr5.3:52369559-52369578 MS.gene049964:CDS 45.0%
TGTGGGTCAAGGGAGTAATT+GGG - chr5.3:52371840-52371859 MS.gene049964:intron 45.0%
TTACCTGGAGCAATATAGCC+AGG + chr5.3:52368742-52368761 None:intergenic 45.0%
TTAGATCGATCAGAAGGGAG+TGG + chr5.3:52371432-52371451 None:intergenic 45.0%
TTCCTCACCACCATCATTCA+TGG - chr5.3:52367888-52367907 MS.gene049964:intron 45.0%
TTCGATGCATAAGACCCCTA+AGG + chr5.3:52368363-52368382 None:intergenic 45.0%
TTGTGGGTCAAGGGAGTAAT+TGG - chr5.3:52371839-52371858 MS.gene049964:intron 45.0%
TTTGAAAGCAGCTAGGGTTC+GGG - chr5.3:52371148-52371167 MS.gene049964:intron 45.0%
! ACGATGAGTTGGAGAATTGG+TGG + chr5.3:52371039-52371058 None:intergenic 45.0%
! CCATTGGTGTTTAGATGGGT+TGG - chr5.3:52372729-52372748 MS.gene049964:intron 45.0%
! CCTTAATGAGCTAGTGTTGG+AGG - chr5.3:52368180-52368199 MS.gene049964:intron 45.0%
! CTCTGCGATCTCTTTTCTTC+TGG - chr5.3:52370964-52370983 MS.gene049964:intron 45.0%
! CTTTGAAAGCAGCTAGGGTT+CGG - chr5.3:52371147-52371166 MS.gene049964:intron 45.0%
! CTTTTCTTCTGGATGTCACC+AGG - chr5.3:52370975-52370994 MS.gene049964:intron 45.0%
! GGAGAATTGGTGGTTGCATT+AGG + chr5.3:52371029-52371048 None:intergenic 45.0%
! GTGGCCATTGGTGTTTAGAT+GGG - chr5.3:52372725-52372744 MS.gene049964:intron 45.0%
! TGTGGCCATTGGTGTTTAGA+TGG - chr5.3:52372724-52372743 MS.gene049964:intron 45.0%
!! GATGGGTTGTTTCTGTTCTG+AGG - chr5.3:52372687-52372706 MS.gene049964:intron 45.0%
!! TCGCTTTTCTTCTTCTCCTC+TGG - chr5.3:52371509-52371528 MS.gene049964:intron 45.0%
!! AAATATATTATAATTGAAAA+AGG + chr5.3:52371710-52371729 None:intergenic 5.0%
!!! ATATATATTGAAATTTTTTT+AGG + chr5.3:52370769-52370788 None:intergenic 5.0%
!!! ATTTTTCTTTTAATTTAAAA+TGG - chr5.3:52368963-52368982 MS.gene049964:CDS 5.0%
!!! TAATAGAAAATAATTTTTTT+TGG - chr5.3:52370299-52370318 MS.gene049964:intron 5.0%
!!! TTATTTTTATGTTATTATTA+TGG + chr5.3:52370380-52370399 None:intergenic 5.0%
!!! TTTATATGTATTTTTTTTAT+TGG - chr5.3:52371745-52371764 MS.gene049964:intron 5.0%
ACACCAATGGCCACACTCTA+AGG + chr5.3:52372719-52372738 None:intergenic 50.0%
ACATTCCACACTAAGGCTGG+AGG + chr5.3:52368493-52368512 None:intergenic 50.0%
ACCTGGAGCAATATAGCCAG+GGG + chr5.3:52368740-52368759 None:intergenic 50.0%
AGGTCCGACAGTGAGCTATT+AGG - chr5.3:52369424-52369443 MS.gene049964:CDS 50.0%
AGGTGAACTGGATTTGGGAG+AGG + chr5.3:52372043-52372062 None:intergenic 50.0%
AGGTTCAGTGACAGGTGAAC+TGG + chr5.3:52372055-52372074 None:intergenic 50.0%
CAACATCTCGGAAAGTTGCC+AGG - chr5.3:52371280-52371299 MS.gene049964:intron 50.0%
CACCAATGGCCACACTCTAA+GGG + chr5.3:52372718-52372737 None:intergenic 50.0%
CCTAGCCAGCCAATTTCTGA+AGG + chr5.3:52367724-52367743 None:intergenic 50.0%
CGAACATTCCACACTAAGGC+TGG + chr5.3:52368496-52368515 None:intergenic 50.0%
GAAAGTTACCTGGTGGAGAG+TGG + chr5.3:52371491-52371510 None:intergenic 50.0%
GAAGGGAGTGGTGAATCGAT+AGG + chr5.3:52371420-52371439 None:intergenic 50.0%
GACCAGCAGAACGTTATAGC+TGG - chr5.3:52371931-52371950 MS.gene049964:intron 50.0%
GAGACAAAAGGTGACCTCGT+TGG - chr5.3:52372972-52372991 MS.gene049964:CDS 50.0%
GCACAATGCTTGCGGAAGTT+GGG + chr5.3:52369902-52369921 None:intergenic 50.0%
GCCGGAATTATCGATGCTCT+TGG - chr5.3:52367781-52367800 MS.gene049964:intron 50.0%
GGCTATTCTGTGGCGTATTC+AGG - chr5.3:52373083-52373102 MS.gene049964:CDS 50.0%
GGTTGTTGAGGTTCAGTGAC+AGG + chr5.3:52372063-52372082 None:intergenic 50.0%
GTTGCAACGTGCAACCAAAC+AGG - chr5.3:52370653-52370672 MS.gene049964:intron 50.0%
TCTGTGGCGTATTCAGGTGA+AGG - chr5.3:52373089-52373108 MS.gene049964:CDS 50.0%
TCTTCCTCTTCCTTCAACCC+TGG + chr5.3:52371301-52371320 None:intergenic 50.0%
TGCACAATGCTTGCGGAAGT+TGG + chr5.3:52369903-52369922 None:intergenic 50.0%
! ACATGGACTCCCTTTTAGCC+GGG + chr5.3:52372911-52372930 None:intergenic 50.0%
! CCTTCAGAAATTGGCTGGCT+AGG - chr5.3:52367721-52367740 MS.gene049964:CDS 50.0%
! GACATGGACTCCCTTTTAGC+CGG + chr5.3:52372912-52372931 None:intergenic 50.0%
! GTGGCAGGTGAACTGGATTT+TGG + chr5.3:52371384-52371403 None:intergenic 50.0%
!! ACCCATGAATGATGGTGGTG+AGG + chr5.3:52367893-52367912 None:intergenic 50.0%
!! AGCAGGTGCTGGGAAATCTA+GGG - chr5.3:52371768-52371787 MS.gene049964:intron 50.0%
AACCACCTCCAGCCTTAGTG+TGG - chr5.3:52368485-52368504 MS.gene049964:intron 55.0%
ACCCCTGGCTATATTGCTCC+AGG - chr5.3:52368736-52368755 MS.gene049964:CDS 55.0%
CGGAAAGTTGCCAGGGTTGA+AGG - chr5.3:52371288-52371307 MS.gene049964:intron 55.0%
CTTGGAAGTGGAATCTCGCC+CGG - chr5.3:52372890-52372909 MS.gene049964:intron 55.0%
GAGAAAGGGCCCTTAGAGTG+TGG - chr5.3:52372706-52372725 MS.gene049964:intron 55.0%
GGAATCTCGCCCGGCTAAAA+GGG - chr5.3:52372899-52372918 MS.gene049964:intron 55.0%
GTTGCCAGGGTTGAAGGAAG+AGG - chr5.3:52371294-52371313 MS.gene049964:intron 55.0%
TGGAATCTCGCCCGGCTAAA+AGG - chr5.3:52372898-52372917 MS.gene049964:intron 55.0%
TTCCACACTAAGGCTGGAGG+TGG + chr5.3:52368490-52368509 None:intergenic 55.0%
TTGACGTCTCGCTGCACCAT+TGG + chr5.3:52368580-52368599 None:intergenic 55.0%
!! AGGTTTGGTGGCAGGTGAAC+TGG + chr5.3:52371391-52371410 None:intergenic 55.0%
!! GAGCAGGTGCTGGGAAATCT+AGG - chr5.3:52371767-52371786 MS.gene049964:intron 55.0%
!! GGTTGTTGAGGTTTGGTGGC+AGG + chr5.3:52371399-52371418 None:intergenic 55.0%
ACCAATCGCCACTCTCCACC+AGG - chr5.3:52371480-52371499 MS.gene049964:intron 60.0%
ACCTGGTGGAGAGTGGCGAT+TGG + chr5.3:52371484-52371503 None:intergenic 60.0%
ACGTCTCGCTGCACCATTGG+TGG + chr5.3:52368577-52368596 None:intergenic 60.0%
CCACTCCGAGTCCGTAGCAA+AGG - chr5.3:52371630-52371649 MS.gene049964:intron 60.0%
CCTTTGCTACGGACTCGGAG+TGG + chr5.3:52371633-52371652 None:intergenic 60.0%
CGGGCGAGATTCCACTTCCA+AGG + chr5.3:52372892-52372911 None:intergenic 60.0%
GGCCCTTAGAGTGTGGCCAT+TGG - chr5.3:52372713-52372732 MS.gene049964:intron 60.0%
TCGTGCGTTGTTGGTACCCC+TGG - chr5.3:52368721-52368740 MS.gene049964:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 52367655 52373221 52367655 ID=MS.gene049964
chr5.3 mRNA 52367655 52373221 52367655 ID=MS.gene049964.t1;Parent=MS.gene049964
chr5.3 exon 52372966 52373221 52372966 ID=MS.gene049964.t1.exon1;Parent=MS.gene049964.t1
chr5.3 CDS 52372966 52373221 52372966 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52372119 52372349 52372119 ID=MS.gene049964.t1.exon2;Parent=MS.gene049964.t1
chr5.3 CDS 52372119 52372349 52372119 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52369375 52369602 52369375 ID=MS.gene049964.t1.exon3;Parent=MS.gene049964.t1
chr5.3 CDS 52369375 52369602 52369375 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52369225 52369278 52369225 ID=MS.gene049964.t1.exon4;Parent=MS.gene049964.t1
chr5.3 CDS 52369225 52369278 52369225 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52368669 52369103 52368669 ID=MS.gene049964.t1.exon5;Parent=MS.gene049964.t1
chr5.3 CDS 52368669 52369103 52368669 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52368126 52368163 52368126 ID=MS.gene049964.t1.exon6;Parent=MS.gene049964.t1
chr5.3 CDS 52368126 52368163 52368126 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52367895 52368059 52367895 ID=MS.gene049964.t1.exon7;Parent=MS.gene049964.t1
chr5.3 CDS 52367895 52368059 52367895 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
chr5.3 exon 52367655 52367771 52367655 ID=MS.gene049964.t1.exon8;Parent=MS.gene049964.t1
chr5.3 CDS 52367655 52367771 52367655 ID=cds.MS.gene049964.t1;Parent=MS.gene049964.t1
Gene Sequence

>MS.gene049964

ATGGGAACATTGCATAATTTGTTCTATGGATTGAATATGAGTACTAATGGATTGACAGGTGGCATTCCTTCAGAAATTGGCTGGCTAGGACTGCTGCAAAGTCTAGATATATCCTTGAACAATTTAGCCGGAATTATCGATGCTCTTGGAGGTCTTGTTTCATTAACTGAGGTCAATATTTCTTACAATCTCTTCAGTGGTTCTGTACCATTCGGTCTAATGAGTTTATTGAATTCCTCACCACCATCATTCATGGGTAATCCTCTCTTTCAGTTGTTTGAATTGCATTAAAACTAGTTATGTAAATCCATATGTCTACAAATCAACCGATCATAAAGTTATCGGTAATGTGAAAATTGTGATGATAGAACTTGGATCCTCAATATTGATTTCTGATGTGCAAATTGTGATGATAGAAATGAATTGAAAAGGGCCTTCTATCTTAAGCAAATGTATTTGAACAAAAAGAGGAGGTGGACCAAGTAATTTAGATGTAAGGACCGTATGGGAAAATGATCGGATTCACCTTAATGAGCTAGTGTTGGAGGCTACATAGAACCTAAGTGATTGGTATATTATTGGCATAGGAGCACATGGTATTGTGTACAAAGCCACAATTTGTCAACAGGTTTGTGCTGTAAAGAAGGTTGAATTTGGATGGAGCAAGTAAAAGTGGCGAAGTATCATGCTCAACGAAATTGAAGTCCTTAGGGGTCTTATGCATCGAAATTTGATCAAATATTGGAGCTACTGGATTAGAAAGGACTATGGTTTAGTCATATATAAATTCATCGAAAATGGAAGCCTTTATGAAATTTTGCATGAAATGAAACCACCTCCAGCCTTAGTGTGGAATGTTCGGTTTAATATAGCTGTTGGAATTGCTCAAGAACTAGCTTATCTGCATTACGATTGTATTCCACCAATGGTGCAGCGAGACGTCAAACCAAAGAACATACTTGTTGATGACAATTTGGAGCTTGTTGTAGCTGATTTTGGCACTGCCTTATGCATGAATTTGTTTCAGGATTCTTATAGTTATTCTGAAACCAGGAAATTTCTTTCATCGTGCGTTGTTGGTACCCCTGGCTATATTGCTCCAGGTAATTTATCATTCATTCACAATTAATGTTGATTCACAATTAATTTATCCTTGTGTATTATTTTTCTAGAATCGTTGTTGTCTAGTTGTTATCTTAGATTTCCTTATTATGTCATTTTTTATTTTCAATGTTCACTTGTTATGTACAACTTTAATTAATGATAATTATTATACTCCTTTTTTAATTACTACCTCTTTAGCTTATCATTTTTCTTTTAATTTAAAATGGACAAGTCAGTTGAGATTGGATAATAAAGCATCCAAATTACATTGAAATTCATGAAAATAAGATCCTACTATACTTCTACAAAGTTCAATATGATTTGTTTGTCATGCTTTATAAAAGGAACAAATTAGAGTTCCAACTATTTTCAAGTAATTTGAAATGACTTGTTCATGATAAATAAATTGATAATTGTTGCATTATATCTATTGATTTCATGATGCAAATATAATTTAACAGGAGGGTGACTTTGTTCTATTTCCTTATTCTTTGACCTTATGTTTTTTGCACTCTAACTGTTGATTGATATATTCTATTTGAATGATTAGGTTGTTCACAATCGATTTTGTGCAATGGTAGAGAGGTTATCTGCTCAAATACCTTTAAAGTTTGCTGATGTGCTCTGGCATTTTTTTCCTATTCTAGTTTTCTTCATTTTTCTACAGGTCCGACAGTGAGCTATTAGGCTCAAACAATCAATGCCTTCTCAAAACAGTTGGGATGTTTGCAGAGGTTAATTTTTCATCATGAATTTGCTTCTTTGTAAACATGAATATTTCAAAAGTTTATGGGGAAAAGTGGTGCCTTATCTGTGAGTTTGGAAGTTTCATTTTGAAGTCGAAAGACACACAATCTTCCTTTGAAGTCGAAAAACACACAATCTTCCCTTTCACCTATATGTATACTCTCTCAACTTCAGAATATTGGAAGCCAACTTGGTAATTGAAAGAGAATAATTTTGTAAGACGCGCATGATTCTCAAACTCTTGCATAAGAAAAATACATTGGATAATTCCAGACTTATCTTCCCTCTTTCTCATAAGGTACTTGAGTTCTGCATGATCGGTGTACACAATCACCTTCAAGCCAATGAGATATGGTGCAACAAGGTATGAAGGGTATGGTCCAAACATCAATTCCCAACTTCCGCAAGCATTGTGCATAATTTATATGTGCCGTAGATTTAAATATTTGTTTGTCTTGAATGTTTGGTTTTAGGAAAATTAAGTATGTTCATTTGATTAGTCATGTAAGACTTTGTTTGGATAGTTTGAATAAAAATTGCTTTTGAATGTGTAATTACCAAAAAGGATTTTAATTGTATTTAAAGTTCGATTTTAATTTTTCTTTTAGAGAATTTTTTAAATTTATGTTATTTAATTCAACTGCACGCACCTTCAATTTTTTTTTAATTGCGTACATATTTTTTAAGAAGAATTCAATTGTGTACATATTATTATTTTTGACGGAAACAATCCATATTATACTAGAGTATTTTTGGCAAATTATATTATAAACTTAAAATTTGATATAATATTTAATAGAAAATAATTTTTTTTGGATCATGAGTTAAAAAAATATAAGTATATGGTTCCGAGTAAAACAAAAACAGTTGGCCATAATAATAACATAAAAATAATTAATGTTATAGTTCCGTAAGAAAAATAAAATTAAGCATGCTTCACATATAATAAGGACAATATAGACAATAAAGACATAGTATAAAATATCTGCCCAACAATGTAGTAGAATTGATTCTTCTAATCCCAGAAGTTAGGAATACAAGCTTGCTAAATCAATTCCAAGCCTTAGAATCAATTATATTTTGTTAAAGCCAAACATATTTTTTATGGACAAATCACTTTTTTATATCTCAAACATACGTTATAGAGGTTGCAACGTGCAACCAAACAGGTACTAAGTAAGATATTTATAACTTTTTTTATATTTGCGTAGTAATTCATTGAATTTTTTACTTTTATTTTTACCTTAAAATACTTGCCTTCCTAAAAAAATTTCAATATATATATAACTCTTGAGATTTTTCAATAACGTGATAAAGGAAGTATTTAAAGGGGTAAAAATCCCAACAAACAACAACGAAATCCGGTTAAATATAAACTTTCCTTATTTCCCTCGCGTTTTTATACTTCTTCAAGCAAGGTTTCTTCACGTTAAAGGAAGGAACCCTAACCCTAAGAATCTCTGCGATCTCTTTTCTTCTGGATGTCACCAGGTTAATTAACTCTTCTTTTGAAACCCTAACCTAATGCAACCACCAATTCTCCAACTCATCGTTTTATGTTTATAATCAATGAATGCATTTTCTCATTTAGTTCTTGATTAATTGTAGCAGGAACAACTCCATCATCATCATCATCATCATCTTTGAAAGCAGCTAGGGTTCGGGTTAAGACTAAAAAACGAGTCCACGTTAATGGTATTGTATTCATATTTGATGTTTGTTTCCAATGAATGACTGCCTTTGCTAATATCTTGATTGATTGGAATAGGAATTGCAACATCTCGGAAAGTTGCCAGGGTTGAAGGAAGAGGAAGACCTTCTCTCAAATTGATTTCAAACTCTGAGGAAGAGAACGCTTCATTTGAGGTTGATGATCCAAAATCCAGTTCACCTGCCACCAAACCTCAACAACCTATCGATTCACCACTCCCTTCTGATCGATCTAAAAGAAAGAAGAGAAAGACATCTACACGCACCAATCGCCACTCTCCACCAGGTAACTTTCGCTTTTCTTCTTCTCCTCTGGTTTGGAATATTTGAAACCCTAACCTAATTCTATTCTTGATTGAGTGTGTTTGTTTGTTTTTAACAGAAAGAAGACTTCGAAAAGCTAAAAAAGAAATGCCACTCCGAGTCCGTAGCAAAGGTATTGTTTTCATTTGATTTAGAAATAATAAATAAATGTTTCTTTGATCAATTCACCTTTTTCAATTATAATATATTTTTTATTTTTAAATTTTTTATATGTATTTTTTTTATTGGAGCAGGTGCTGGGAAATCTAGGGTTGAAAGCATAAGCAAACTGTTCGCAAGCTCTGACCACAATATTTTAGTTGTGGGTCAAGGGAGTAATTGGGAACTTTCAAGCTTTGAGAGAGGGAAATCCATTTCAGATAGCAGCAAACCTCAACCTTTGAAGTTTTCTGACCAGCAGAACGTTATAGCTGGTGGTCAACGGAGTAATGACAGAGAGGGAAAATCCATTTCATGTAGCAGCAAACCTCAACCTTTAGAGAACATTTGGATTGATGAAGCCTCTCCCAAATCCAGTTCACCTGTCACTGAACCTCAACAACCTCTCAATGATGAGGAGGACTTGAGTTACACTAACTCTCATCTCACTTTTGAACAAATAGCGGAAAACGCAAAAAAATTACATGAACGCATGATGGCTGAATCCGAATCTGAATCCGATGACAATGGTATGCAGTGCAATTGTGACTTCAACAACTGCACATGTCTTAAATCTTATTATGAATATCTTGCACATGACTTTGAAGAGTTGGATTTTAGGGCAGTCTAGACTAGATACATCCTTGTGTGTATTATTTTCCTACAATCGTCCACTTGTCATCTTAGATTTCTTTATTCTGTCCTTTTTTTATTTTTTTTATTTTCAATGTTCACTTGTTATGTATAACTCCAACTCTGTTTAATTAATTAGAATTATTATTCTCCTCCTTTAATTACTAGTACTACTTTAGTTTATTTATTTATTTTTTTCTTTTAATTTAGAATGGCCGATTCAGTTGAGATTTTTTTTTTTATTTTTTATTTTCGCTTTAAAAGACATTCGCAAGTCAAAGTCATGGGTTTAACGTCAATCGTATGATTTTAGTCTAGCGGTACAGATCACATGACAGCAGCATTCAAATTAGAGCTGAATGAAGAAGAGTATTTAGATGGGTTGTTTCTGTTCTGAGAAAGGGCCCTTAGAGTGTGGCCATTGGTGTTTAGATGGGTTGGTATTGGTTTTTATTACTCCATCAAACCTTTTTGTACATTTGGCACTGGTTTGGGTTATTCTGTAGGCACAAAATGATCATATATTCAAGAATAGGTCAAGAGATTATGGTGAGATAGTGGATGAAATAAAGGTAGTGCCTTGGAAGTGGAATCTCGCCCGGCTAAAAGGGAGTCCATGTCTTTTCTACGAATGGTATTGTGATCGTGGAAAATGTGTCAAGAGACAAAAGGTGACCTCGTTGGGTTTTTTCTGTGTGTTTTGATTTGATGTTGTTTATGTTGCTGTTCTGTTGTAGCTCTTGTTTTTTAATTCAGTTTGTCTGCGGTATTTGGCTATTCTGTGGCGTATTCAGGTGAAGGTTTTTTCTATGTTCTGTTTTCATGTGGCAGCGACTGTTTGTGCTAGTACAGATGGGTGCAAATTAGAGCTGAATGAAGAAGAGTATTTAGATGGGTTGTTTCTGTTCTGA
Protein sequence

>MS.gene049964.t1

MGTLHNLFYGLNMSTNGLTGGIPSEIGWLGLLQSLDISLNNLAGIIDALGGLVSLTEVNISYNLFSGSVPFGLMSLLNSSPPSFMAVGIAQELAYLHYDCIPPMVQRDVKPKNILVDDNLELVVADFGTALCMNLFQDSYSYSETRKFLSSCVVGTPGYIAPGIATSRKVARVEGRGRPSLKLISNSEEENASFEVDDPKSSSPATKPQQPIDSPLPSDRSKRKKRKTSTRTNRHSPPERRLRKAKKEMPLRVRSKGAGKSRVESISKLFASSDHNILVVGQGSNWELSSFERGKSISDSSKPQPLKFSDQQNVIAGGQRSNDREGKSISCSSKPQPLENIWIDEASPKSSSPVTEPQQPLNDEEDLSYTNSHLTFEQIAENAKKLHERMMAESESESDDNGPLECGHWCLDGLAQNDHIFKNRSRDYGEIVDEIKVVPWKWNLARLKGSPCLFYEWYCDRGKCVKRQKVKVFSMFCFHVAATVCASTDGCKLELNEEEYLDGLFLF