Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050066.t1 | XP_003615193.2 | 75.9 | 324 | 54 | 2 | 1 | 324 | 1 | 300 | 1.30E-125 | 459.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050066.t1 | Q9C7T4 | 49.0 | 335 | 140 | 8 | 1 | 321 | 1 | 318 | 2.4e-56 | 220.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050066.t1 | G7KAJ7 | 75.9 | 324 | 54 | 2 | 1 | 324 | 1 | 300 | 9.1e-126 | 459.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050066.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050066.t1 | MTR_5g064950 | 79.012 | 324 | 44 | 2 | 1 | 324 | 1 | 300 | 0.0 | 518 |
| MS.gene050066.t1 | MTR_5g064950 | 79.110 | 292 | 38 | 1 | 1 | 292 | 1 | 269 | 3.72e-170 | 475 |
| MS.gene050066.t1 | MTR_3g099620 | 52.647 | 340 | 119 | 14 | 1 | 321 | 1 | 317 | 7.42e-99 | 294 |
| MS.gene050066.t1 | MTR_7g113830 | 43.902 | 328 | 147 | 12 | 1 | 321 | 14 | 311 | 1.30e-74 | 232 |
| MS.gene050066.t1 | MTR_1g082480 | 40.176 | 341 | 161 | 9 | 1 | 319 | 14 | 333 | 3.80e-68 | 216 |
| MS.gene050066.t1 | MTR_8g066770 | 53.271 | 214 | 91 | 5 | 113 | 324 | 104 | 310 | 2.40e-67 | 213 |
| MS.gene050066.t1 | MTR_1g082480 | 39.490 | 314 | 148 | 8 | 1 | 292 | 14 | 307 | 4.90e-60 | 196 |
| MS.gene050066.t1 | MTR_0194s0050 | 42.791 | 215 | 113 | 5 | 105 | 312 | 166 | 377 | 1.86e-46 | 161 |
| MS.gene050066.t1 | MTR_8g024210 | 42.041 | 245 | 117 | 4 | 73 | 312 | 133 | 357 | 2.38e-46 | 160 |
| MS.gene050066.t1 | MTR_2g022280 | 39.773 | 176 | 102 | 2 | 123 | 298 | 1 | 172 | 2.53e-35 | 127 |
| MS.gene050066.t1 | MTR_3g090850 | 30.503 | 318 | 164 | 9 | 46 | 317 | 19 | 325 | 3.43e-32 | 122 |
| MS.gene050066.t1 | MTR_1g028470 | 30.068 | 296 | 150 | 10 | 46 | 317 | 27 | 289 | 2.28e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050066.t1 | AT1G72210 | 46.356 | 343 | 133 | 10 | 1 | 319 | 1 | 316 | 3.30e-85 | 259 |
| MS.gene050066.t1 | AT1G72210 | 44.620 | 316 | 125 | 9 | 1 | 292 | 1 | 290 | 4.77e-73 | 228 |
| MS.gene050066.t1 | AT1G22490 | 43.544 | 333 | 144 | 11 | 1 | 319 | 1 | 303 | 2.72e-70 | 221 |
| MS.gene050066.t1 | AT1G22490 | 41.503 | 306 | 136 | 10 | 1 | 292 | 1 | 277 | 1.86e-57 | 189 |
| MS.gene050066.t1 | AT5G65320 | 40.580 | 207 | 108 | 2 | 119 | 319 | 98 | 295 | 4.74e-43 | 150 |
| MS.gene050066.t1 | AT5G46690 | 44.958 | 238 | 87 | 8 | 113 | 319 | 78 | 302 | 4.80e-43 | 151 |
| MS.gene050066.t1 | AT4G01460 | 39.437 | 213 | 112 | 3 | 113 | 319 | 105 | 306 | 1.98e-42 | 149 |
| MS.gene050066.t1 | AT4G01460 | 39.437 | 213 | 112 | 3 | 113 | 319 | 105 | 306 | 1.98e-42 | 149 |
| MS.gene050066.t1 | AT3G24140 | 39.819 | 221 | 117 | 3 | 103 | 312 | 177 | 392 | 5.16e-41 | 147 |
| MS.gene050066.t1 | AT3G24140 | 39.819 | 221 | 117 | 3 | 103 | 312 | 177 | 392 | 6.27e-41 | 147 |
| MS.gene050066.t1 | AT2G46810 | 40.097 | 207 | 94 | 5 | 114 | 312 | 112 | 296 | 4.79e-40 | 142 |
| MS.gene050066.t1 | AT2G46810 | 40.097 | 207 | 94 | 5 | 114 | 312 | 172 | 356 | 1.99e-39 | 142 |
| MS.gene050066.t1 | AT2G46810 | 40.097 | 207 | 94 | 5 | 114 | 312 | 184 | 368 | 2.20e-39 | 142 |
| MS.gene050066.t1 | AT3G61950 | 38.462 | 208 | 99 | 6 | 112 | 312 | 116 | 301 | 3.20e-38 | 138 |
| MS.gene050066.t1 | AT3G61950 | 38.462 | 208 | 99 | 6 | 112 | 312 | 167 | 352 | 1.45e-37 | 137 |
| MS.gene050066.t1 | AT5G65320 | 40.642 | 187 | 96 | 2 | 119 | 299 | 98 | 275 | 1.42e-36 | 133 |
| MS.gene050066.t1 | AT3G61950 | 39.655 | 174 | 78 | 4 | 112 | 279 | 116 | 268 | 3.89e-36 | 132 |
| MS.gene050066.t1 | AT5G46690 | 44.550 | 211 | 74 | 7 | 113 | 292 | 78 | 276 | 4.09e-36 | 132 |
| MS.gene050066.t1 | AT2G46810 | 41.176 | 187 | 81 | 4 | 114 | 292 | 112 | 277 | 1.08e-35 | 132 |
| MS.gene050066.t1 | AT3G61950 | 39.655 | 174 | 78 | 4 | 112 | 279 | 167 | 319 | 2.33e-35 | 131 |
| MS.gene050066.t1 | AT3G06120 | 35.263 | 190 | 98 | 5 | 123 | 298 | 1 | 179 | 9.27e-30 | 112 |
| MS.gene050066.t1 | AT5G53210 | 57.143 | 63 | 27 | 0 | 121 | 183 | 100 | 162 | 1.24e-18 | 85.9 |
| MS.gene050066.t1 | AT5G53210 | 57.143 | 63 | 27 | 0 | 121 | 183 | 100 | 162 | 1.63e-18 | 85.5 |
| MS.gene050066.t1 | AT3G61950 | 62.791 | 43 | 16 | 0 | 112 | 154 | 167 | 209 | 4.41e-12 | 65.1 |
| MS.gene050066.t1 | AT3G61950 | 62.791 | 43 | 16 | 0 | 112 | 154 | 167 | 209 | 4.41e-12 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAATATCCTTTCAAAT+TGG | 0.190211 | 5.4:-50546084 | MS.gene050066:CDS |
| TGCCTCCTTCTTATGCAAAA+AGG | 0.226402 | 5.4:-50545814 | MS.gene050066:CDS |
| GTGGGAAGAGTGGAAGTTTC+AGG | 0.228105 | 5.4:+50546010 | None:intergenic |
| CATGTTTCCTCAATACTCTA+TGG | 0.258942 | 5.4:-50545320 | MS.gene050066:CDS |
| TCACAATATCCTTTCAAATT+GGG | 0.367011 | 5.4:-50546083 | MS.gene050066:CDS |
| CCATGCCACGTGACTGATTA+TGG | 0.383936 | 5.4:+50545263 | None:intergenic |
| CATTGGTCTTTAACATTTGA+AGG | 0.384395 | 5.4:+50546049 | None:intergenic |
| TGAGCTATCACGTAGAATTC+AGG | 0.385207 | 5.4:-50544493 | MS.gene050066:CDS |
| GTTGTTGGGATTCAAAATCT+TGG | 0.395613 | 5.4:-50545157 | MS.gene050066:CDS |
| ACTTGGAGTGGTTTCAACTA+AGG | 0.406246 | 5.4:+50546186 | None:intergenic |
| ATGTTTCCTCAATACTCTAT+GGG | 0.408818 | 5.4:-50545319 | MS.gene050066:CDS |
| AGGTCAAGTAATGGCCTTAG+AGG | 0.417204 | 5.4:-50546263 | None:intergenic |
| CGGTGCAATTAACTTCTTGA+AGG | 0.418841 | 5.4:-50545455 | MS.gene050066:CDS |
| CCACTCCAAGTGAAGGATCT+TGG | 0.429067 | 5.4:-50546174 | MS.gene050066:CDS |
| CAAGTTATGAAGATGGTTGT+TGG | 0.432001 | 5.4:-50545172 | MS.gene050066:CDS |
| AAGTTATGAAGATGGTTGTT+GGG | 0.433872 | 5.4:-50545171 | MS.gene050066:CDS |
| GTCGTCGTTTGCTCTGACGA+GGG | 0.441817 | 5.4:+50545954 | None:intergenic |
| ATTAATAAATAGGTAGAAGA+AGG | 0.442402 | 5.4:-50544561 | MS.gene050066:intron |
| CCAAGATCCTTCACTTGGAG+TGG | 0.454095 | 5.4:+50546174 | None:intergenic |
| CTGTAAATCAATGGATATTG+TGG | 0.467398 | 5.4:+50546229 | None:intergenic |
| GGCAGATATAGAAGTGACTT+TGG | 0.474900 | 5.4:-50545242 | MS.gene050066:CDS |
| TGGCTCCAAGATCCTTCACT+TGG | 0.493996 | 5.4:+50546169 | None:intergenic |
| TGTTGTGGTGGATGCAAAAG+TGG | 0.496117 | 5.4:+50545985 | None:intergenic |
| TTTGCTCTGACGAGGGGCTG+TGG | 0.500724 | 5.4:+50545961 | None:intergenic |
| CGTGACTGATTATGGTTGGT+AGG | 0.510486 | 5.4:+50545271 | None:intergenic |
| TGCATAAGAAGGAGGCATCA+AGG | 0.514555 | 5.4:+50545820 | None:intergenic |
| TCTTTGCAACTGTAAATCAA+TGG | 0.515148 | 5.4:+50546220 | None:intergenic |
| GGTGATCAAGCGTCAATAGT+TGG | 0.522208 | 5.4:-50545478 | MS.gene050066:CDS |
| AAGGAGGCATCAAGGATTTG+AGG | 0.530586 | 5.4:+50545828 | None:intergenic |
| ACATAATCTACAACTCATGA+AGG | 0.534004 | 5.4:-50545425 | MS.gene050066:CDS |
| CTTCAAATGTTAAAGACCAA+TGG | 0.535334 | 5.4:-50546048 | MS.gene050066:CDS |
| TTGTTTGGCAACCGTAGTTG+TGG | 0.536558 | 5.4:+50546149 | None:intergenic |
| CCTTGTCTCGATTAGTGCTA+AGG | 0.537853 | 5.4:-50545089 | MS.gene050066:intron |
| GTGAAGAGTGTGAATTCCAT+TGG | 0.541764 | 5.4:+50546032 | None:intergenic |
| CAACTACTGAACACAGTGGA+TGG | 0.542124 | 5.4:-50544534 | MS.gene050066:CDS |
| AGGGGCTGTGGTTGTTGTGG+TGG | 0.542969 | 5.4:+50545973 | None:intergenic |
| AAGAAGAATCCCAATTTGAA+AGG | 0.545406 | 5.4:+50546074 | None:intergenic |
| AAAAGTGGAAGTGGGAAGAG+TGG | 0.547176 | 5.4:+50546000 | None:intergenic |
| AGGAGGAAATCGAGAGCCAC+AGG | 0.553917 | 5.4:-50545910 | MS.gene050066:CDS |
| ACGAGGGGCTGTGGTTGTTG+TGG | 0.561823 | 5.4:+50545970 | None:intergenic |
| GGTGGATGCAAAAGTGGAAG+TGG | 0.562310 | 5.4:+50545991 | None:intergenic |
| CCATAATCAGTCACGTGGCA+TGG | 0.565688 | 5.4:-50545263 | MS.gene050066:CDS |
| CGTCGTCGTTTGCTCTGACG+AGG | 0.569503 | 5.4:+50545953 | None:intergenic |
| GTGACTGATTATGGTTGGTA+GGG | 0.576193 | 5.4:+50545272 | None:intergenic |
| ACAAGGACAAGTTATGAAGA+TGG | 0.578962 | 5.4:-50545179 | MS.gene050066:CDS |
| TTAATAAATAGGTAGAAGAA+GGG | 0.582628 | 5.4:-50544560 | MS.gene050066:intron |
| GTTGAAACCACTCCAAGTGA+AGG | 0.604132 | 5.4:-50546181 | MS.gene050066:CDS |
| GGGTAGCACGTGATGTTCTG+AGG | 0.605537 | 5.4:+50545292 | None:intergenic |
| ACATCTTAATGTTTCCAGTG+TGG | 0.609712 | 5.4:-50545122 | MS.gene050066:CDS |
| CCTTAGCACTAATCGAGACA+AGG | 0.610188 | 5.4:+50545089 | None:intergenic |
| TCGTCGTTTGCTCTGACGAG+GGG | 0.613990 | 5.4:+50545955 | None:intergenic |
| GGTGCACCCATAGAGTATTG+AGG | 0.621516 | 5.4:+50545313 | None:intergenic |
| GTGGATGCAAAAGTGGAAGT+GGG | 0.621519 | 5.4:+50545992 | None:intergenic |
| GGATCTTGGAGCCACAACTA+CGG | 0.621648 | 5.4:-50546160 | MS.gene050066:CDS |
| CATAATCTACAACTCATGAA+GGG | 0.646610 | 5.4:-50545424 | MS.gene050066:CDS |
| GCTATCACGTAGAATTCAGG+TGG | 0.646782 | 5.4:-50544490 | MS.gene050066:CDS |
| GCCACGTGACTGATTATGGT+TGG | 0.656195 | 5.4:+50545267 | None:intergenic |
| GATCAAGCGTCAATAGTTGG+CGG | 0.662112 | 5.4:-50545475 | MS.gene050066:CDS |
| AAGGACAGTATCATCCACAC+TGG | 0.670520 | 5.4:+50545108 | None:intergenic |
| CTGCAATGTGAGTCATCCTG+TGG | 0.677176 | 5.4:+50545894 | None:intergenic |
| ACCAACCATAATCAGTCACG+TGG | 0.705729 | 5.4:-50545268 | MS.gene050066:CDS |
| TCAAGGATTTGAGGACATCG+AGG | 0.738437 | 5.4:+50545837 | None:intergenic |
| GTGTCAACTACTGAACACAG+TGG | 0.768612 | 5.4:-50544538 | MS.gene050066:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTCATAAATATAATATA+TGG | - | chr5.4:50545892-50545911 | MS.gene050066:CDS | 10.0% |
| !! | ATATATTGGAATTAATAAAT+AGG | - | chr5.4:50546152-50546171 | MS.gene050066:CDS | 10.0% |
| !!! | TTGAAAATTTTGATTTTTTT+TGG | + | chr5.4:50545194-50545213 | None:intergenic | 10.0% |
| !! | GAAAATAGTGAAAAATAATT+TGG | - | chr5.4:50546119-50546138 | MS.gene050066:CDS | 15.0% |
| !! | TTCAAAATTCACTTAATATA+TGG | - | chr5.4:50545968-50545987 | MS.gene050066:CDS | 15.0% |
| !! | TTGGTTACTAATTTATATAT+TGG | - | chr5.4:50546138-50546157 | MS.gene050066:CDS | 15.0% |
| !! | ATAAAATTCACTATCAACAA+GGG | - | chr5.4:50545713-50545732 | MS.gene050066:intron | 20.0% |
| !! | ATGTGTTATAAAATTGTTGT+TGG | + | chr5.4:50545139-50545158 | None:intergenic | 20.0% |
| !! | ATTAATAAATAGGTAGAAGA+AGG | - | chr5.4:50546162-50546181 | MS.gene050066:CDS | 20.0% |
| !! | TATAAAATTCACTATCAACA+AGG | - | chr5.4:50545712-50545731 | MS.gene050066:intron | 20.0% |
| !! | TTAATAAATAGGTAGAAGAA+GGG | - | chr5.4:50546163-50546182 | MS.gene050066:CDS | 20.0% |
| !!! | TGTGTTATAAAATTGTTGTT+GGG | + | chr5.4:50545138-50545157 | None:intergenic | 20.0% |
| ! | AACATGAAAAACTCAGTAAA+AGG | + | chr5.4:50545389-50545408 | None:intergenic | 25.0% |
| ! | AATCAAGTGATAAAAAGACT+TGG | - | chr5.4:50545739-50545758 | MS.gene050066:intron | 25.0% |
| ! | ATAATGTTGAAAAAACGACA+AGG | - | chr5.4:50545527-50545546 | MS.gene050066:intron | 25.0% |
| ! | ATCACAATATCCTTTCAAAT+TGG | - | chr5.4:50544639-50544658 | MS.gene050066:intron | 25.0% |
| ! | ATCACTTGATAAGTTTAAAC+AGG | - | chr5.4:50545930-50545949 | MS.gene050066:CDS | 25.0% |
| ! | TAAACCACATGTAGAATTTA+GGG | + | chr5.4:50545217-50545236 | None:intergenic | 25.0% |
| ! | TACATGTGGTTTAAAAAACA+GGG | - | chr5.4:50545224-50545243 | MS.gene050066:CDS | 25.0% |
| ! | TCACAATATCCTTTCAAATT+GGG | - | chr5.4:50544640-50544659 | MS.gene050066:intron | 25.0% |
| ! | TCACTTGATAAGTTTAAACA+GGG | - | chr5.4:50545931-50545950 | MS.gene050066:CDS | 25.0% |
| ! | TGTTTCATAAACACAATTGT+TGG | - | chr5.4:50544989-50545008 | MS.gene050066:intron | 25.0% |
| ! | TTAAACCACATGTAGAATTT+AGG | + | chr5.4:50545218-50545237 | None:intergenic | 25.0% |
| !! | GTGTTATAAAATTGTTGTTG+GGG | + | chr5.4:50545137-50545156 | None:intergenic | 25.0% |
| !!! | ATATGCTTTAAAAATTGACG+TGG | + | chr5.4:50546080-50546099 | None:intergenic | 25.0% |
| AAGAAGAATCCCAATTTGAA+AGG | + | chr5.4:50544652-50544671 | None:intergenic | 30.0% | |
| AAGTTATGAAGATGGTTGTT+GGG | - | chr5.4:50545552-50545571 | MS.gene050066:intron | 30.0% | |
| ACATAATCTACAACTCATGA+AGG | - | chr5.4:50545298-50545317 | MS.gene050066:CDS | 30.0% | |
| AGAGAAATATTCGATTGAGA+GGG | - | chr5.4:50545806-50545825 | MS.gene050066:intron | 30.0% | |
| ATGAAAAACTCAGTAAAAGG+TGG | + | chr5.4:50545386-50545405 | None:intergenic | 30.0% | |
| ATGTTTCCTCAATACTCTAT+GGG | - | chr5.4:50545404-50545423 | MS.gene050066:CDS | 30.0% | |
| CATAATCTACAACTCATGAA+GGG | - | chr5.4:50545299-50545318 | MS.gene050066:CDS | 30.0% | |
| CTACATGTGGTTTAAAAAAC+AGG | - | chr5.4:50545223-50545242 | MS.gene050066:CDS | 30.0% | |
| CTGTAAATCAATGGATATTG+TGG | + | chr5.4:50544497-50544516 | None:intergenic | 30.0% | |
| CTTCAAATGTTAAAGACCAA+TGG | - | chr5.4:50544675-50544694 | MS.gene050066:intron | 30.0% | |
| TAGAGAAATATTCGATTGAG+AGG | - | chr5.4:50545805-50545824 | MS.gene050066:intron | 30.0% | |
| TCTTTGCAACTGTAAATCAA+TGG | + | chr5.4:50544506-50544525 | None:intergenic | 30.0% | |
| ! | ACTTTGATGCCTTATAGTTT+TGG | - | chr5.4:50545060-50545079 | MS.gene050066:intron | 30.0% |
| ! | ATTACCCTTTTTGCATAAGA+AGG | + | chr5.4:50544917-50544936 | None:intergenic | 30.0% |
| ! | ATTTTTGTCGCGAAAATTGT+TGG | + | chr5.4:50545848-50545867 | None:intergenic | 30.0% |
| ! | CTTTGATGCCTTATAGTTTT+GGG | - | chr5.4:50545061-50545080 | MS.gene050066:intron | 30.0% |
| !! | CATTGGTCTTTAACATTTGA+AGG | + | chr5.4:50544677-50544696 | None:intergenic | 30.0% |
| ACAAGGACAAGTTATGAAGA+TGG | - | chr5.4:50545544-50545563 | MS.gene050066:intron | 35.0% | |
| ACATCTTAATGTTTCCAGTG+TGG | - | chr5.4:50545601-50545620 | MS.gene050066:intron | 35.0% | |
| CAAGTTATGAAGATGGTTGT+TGG | - | chr5.4:50545551-50545570 | MS.gene050066:intron | 35.0% | |
| CATGTTTCCTCAATACTCTA+TGG | - | chr5.4:50545403-50545422 | MS.gene050066:CDS | 35.0% | |
| CGATTAGTGCTAAGGTAAAT+TGG | - | chr5.4:50545642-50545661 | MS.gene050066:intron | 35.0% | |
| GTTGTTGGGATTCAAAATCT+TGG | - | chr5.4:50545566-50545585 | MS.gene050066:intron | 35.0% | |
| TCAACCCTAAATTCTACATG+TGG | - | chr5.4:50545210-50545229 | MS.gene050066:CDS | 35.0% | |
| TGGAAAAACTATAGCCTCTA+AGG | + | chr5.4:50544477-50544496 | None:intergenic | 35.0% | |
| TGTGAATGCAAAAAATGAGG+AGG | - | chr5.4:50544796-50544815 | MS.gene050066:intron | 35.0% | |
| ! | AAAAATTGACGTGGTGGTTT+TGG | + | chr5.4:50546071-50546090 | None:intergenic | 35.0% |
| ! | GATCTTCTTCGTCTTTTGTT+TGG | + | chr5.4:50544592-50544611 | None:intergenic | 35.0% |
| !! | AGTGAATTTTGAAAGTCACC+TGG | + | chr5.4:50545961-50545980 | None:intergenic | 35.0% |
| !! | TGCTTTAAAAATTGACGTGG+TGG | + | chr5.4:50546077-50546096 | None:intergenic | 35.0% |
| !!! | CCTCAATTTTTAGTCGATGT+GGG | + | chr5.4:50545038-50545057 | None:intergenic | 35.0% |
| !!! | CCTCATTTTTTGCATTCACA+GGG | + | chr5.4:50544796-50544815 | None:intergenic | 35.0% |
| !!! | TCCTCAATTTTTAGTCGATG+TGG | + | chr5.4:50545039-50545058 | None:intergenic | 35.0% |
| !!! | TCCTCATTTTTTGCATTCAC+AGG | + | chr5.4:50544797-50544816 | None:intergenic | 35.0% |
| AAGTTTAAACAGGGTGAACC+AGG | - | chr5.4:50545940-50545959 | MS.gene050066:CDS | 40.0% | |
| ACTTGGAGTGGTTTCAACTA+AGG | + | chr5.4:50544540-50544559 | None:intergenic | 40.0% | |
| CACTCGTACCCAAAACTATA+AGG | + | chr5.4:50545072-50545091 | None:intergenic | 40.0% | |
| CCCTGTGAATGCAAAAAATG+AGG | - | chr5.4:50544793-50544812 | MS.gene050066:intron | 40.0% | |
| CGGTGCAATTAACTTCTTGA+AGG | - | chr5.4:50545268-50545287 | MS.gene050066:CDS | 40.0% | |
| GCCTCCTTCTTATGCAAAAA+GGG | - | chr5.4:50544910-50544929 | MS.gene050066:intron | 40.0% | |
| GGCAGATATAGAAGTGACTT+TGG | - | chr5.4:50545481-50545500 | MS.gene050066:CDS | 40.0% | |
| TGAGCTATCACGTAGAATTC+AGG | - | chr5.4:50546230-50546249 | MS.gene050066:CDS | 40.0% | |
| TGCCTCCTTCTTATGCAAAA+AGG | - | chr5.4:50544909-50544928 | MS.gene050066:intron | 40.0% | |
| ! | AAAATTGTTGTTGGGGAGTC+TGG | + | chr5.4:50545130-50545149 | None:intergenic | 40.0% |
| ! | AAATTGTTGTTGGGGAGTCT+GGG | + | chr5.4:50545129-50545148 | None:intergenic | 40.0% |
| ! | ACCCTTTTTGCATAAGAAGG+AGG | + | chr5.4:50544914-50544933 | None:intergenic | 40.0% |
| ! | CCCACATCGACTAAAAATTG+AGG | - | chr5.4:50545035-50545054 | MS.gene050066:intron | 40.0% |
| ! | GTGAAGAGTGTGAATTCCAT+TGG | + | chr5.4:50544694-50544713 | None:intergenic | 40.0% |
| ! | GTGACTGATTATGGTTGGTA+GGG | + | chr5.4:50545454-50545473 | None:intergenic | 40.0% |
| ! | TCCTAGACTTTTAACGCATC+CGG | - | chr5.4:50545099-50545118 | MS.gene050066:CDS | 40.0% |
| !!! | TATAGTTTTGGGTACGAGTG+TGG | - | chr5.4:50545072-50545091 | MS.gene050066:intron | 40.0% |
| !!! | TGGTTTTTTGAAAGTCACCC+TGG | + | chr5.4:50546051-50546070 | None:intergenic | 40.0% |
| AAAAGTGGAAGTGGGAAGAG+TGG | + | chr5.4:50544726-50544745 | None:intergenic | 45.0% | |
| AAGGACAGTATCATCCACAC+TGG | + | chr5.4:50545618-50545637 | None:intergenic | 45.0% | |
| ACCAACCATAATCAGTCACG+TGG | - | chr5.4:50545455-50545474 | MS.gene050066:CDS | 45.0% | |
| CAACTACTGAACACAGTGGA+TGG | - | chr5.4:50546189-50546208 | MS.gene050066:CDS | 45.0% | |
| CCTTAGCACTAATCGAGACA+AGG | + | chr5.4:50545637-50545656 | None:intergenic | 45.0% | |
| CCTTGTCTCGATTAGTGCTA+AGG | - | chr5.4:50545634-50545653 | MS.gene050066:intron | 45.0% | |
| CGCGAAAATTGTTGGAGACA+CGG | + | chr5.4:50545840-50545859 | None:intergenic | 45.0% | |
| CGTGACTGATTATGGTTGGT+AGG | + | chr5.4:50545455-50545474 | None:intergenic | 45.0% | |
| GATCAAGCGTCAATAGTTGG+CGG | - | chr5.4:50545248-50545267 | MS.gene050066:CDS | 45.0% | |
| GCTATCACGTAGAATTCAGG+TGG | - | chr5.4:50546233-50546252 | MS.gene050066:CDS | 45.0% | |
| GGTGATCAAGCGTCAATAGT+TGG | - | chr5.4:50545245-50545264 | MS.gene050066:CDS | 45.0% | |
| GTGGATGCAAAAGTGGAAGT+GGG | + | chr5.4:50544734-50544753 | None:intergenic | 45.0% | |
| GTGTCAACTACTGAACACAG+TGG | - | chr5.4:50546185-50546204 | MS.gene050066:CDS | 45.0% | |
| GTTCTCGCTATGAGTGAGAA+TGG | + | chr5.4:50546020-50546039 | None:intergenic | 45.0% | |
| GTTGAAACCACTCCAAGTGA+AGG | - | chr5.4:50544542-50544561 | MS.gene050066:CDS | 45.0% | |
| TCAAGGATTTGAGGACATCG+AGG | + | chr5.4:50544889-50544908 | None:intergenic | 45.0% | |
| TCTCACTCATAGCGAGAACA+AGG | - | chr5.4:50546021-50546040 | MS.gene050066:CDS | 45.0% | |
| TTGTTTGGCAACCGTAGTTG+TGG | + | chr5.4:50544577-50544596 | None:intergenic | 45.0% | |
| ! | AATTGTTGTTGGGGAGTCTG+GGG | + | chr5.4:50545128-50545147 | None:intergenic | 45.0% |
| ! | CCTAGACTTTTAACGCATCC+GGG | - | chr5.4:50545100-50545119 | MS.gene050066:CDS | 45.0% |
| !! | AAGGAGGCATCAAGGATTTG+AGG | + | chr5.4:50544898-50544917 | None:intergenic | 45.0% |
| !! | TGCATAAGAAGGAGGCATCA+AGG | + | chr5.4:50544906-50544925 | None:intergenic | 45.0% |
| !! | TGTTGTGGTGGATGCAAAAG+TGG | + | chr5.4:50544741-50544760 | None:intergenic | 45.0% |
| AGCGAGAACAAGGTGAACCA+GGG | - | chr5.4:50546031-50546050 | MS.gene050066:CDS | 50.0% | |
| CCAAGATCCTTCACTTGGAG+TGG | + | chr5.4:50544552-50544571 | None:intergenic | 50.0% | |
| CCACTCCAAGTGAAGGATCT+TGG | - | chr5.4:50544549-50544568 | MS.gene050066:CDS | 50.0% | |
| CCATAATCAGTCACGTGGCA+TGG | - | chr5.4:50545460-50545479 | MS.gene050066:CDS | 50.0% | |
| CCATGCCACGTGACTGATTA+TGG | + | chr5.4:50545463-50545482 | None:intergenic | 50.0% | |
| CCCGGATGCGTTAAAAGTCT+AGG | + | chr5.4:50545103-50545122 | None:intergenic | 50.0% | |
| CTGCAATGTGAGTCATCCTG+TGG | + | chr5.4:50544832-50544851 | None:intergenic | 50.0% | |
| GCCACGTGACTGATTATGGT+TGG | + | chr5.4:50545459-50545478 | None:intergenic | 50.0% | |
| GGATCTTGGAGCCACAACTA+CGG | - | chr5.4:50544563-50544582 | MS.gene050066:intron | 50.0% | |
| GGTGGATGCAAAAGTGGAAG+TGG | + | chr5.4:50544735-50544754 | None:intergenic | 50.0% | |
| GTGGGAAGAGTGGAAGTTTC+AGG | + | chr5.4:50544716-50544735 | None:intergenic | 50.0% | |
| TAGCGAGAACAAGGTGAACC+AGG | - | chr5.4:50546030-50546049 | MS.gene050066:CDS | 50.0% | |
| TGGCTCCAAGATCCTTCACT+TGG | + | chr5.4:50544557-50544576 | None:intergenic | 50.0% | |
| !! | GGTGCACCCATAGAGTATTG+AGG | + | chr5.4:50545413-50545432 | None:intergenic | 50.0% |
| AGGAGGAAATCGAGAGCCAC+AGG | - | chr5.4:50544813-50544832 | MS.gene050066:intron | 55.0% | |
| GGGTAGCACGTGATGTTCTG+AGG | + | chr5.4:50545434-50545453 | None:intergenic | 55.0% | |
| GTCGTCGTTTGCTCTGACGA+GGG | + | chr5.4:50544772-50544791 | None:intergenic | 55.0% | |
| TCGTCGTTTGCTCTGACGAG+GGG | + | chr5.4:50544771-50544790 | None:intergenic | 55.0% | |
| ACGAGGGGCTGTGGTTGTTG+TGG | + | chr5.4:50544756-50544775 | None:intergenic | 60.0% | |
| AGGGGCTGTGGTTGTTGTGG+TGG | + | chr5.4:50544753-50544772 | None:intergenic | 60.0% | |
| CGTCGTCGTTTGCTCTGACG+AGG | + | chr5.4:50544773-50544792 | None:intergenic | 60.0% | |
| TTTGCTCTGACGAGGGGCTG+TGG | + | chr5.4:50544765-50544784 | None:intergenic | 60.0% | |
| GTTGGGGAGTCTGGGGAGCC+CGG | + | chr5.4:50545121-50545140 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 50544470 | 50546275 | 50544470 | ID=MS.gene050066 |
| chr5.4 | mRNA | 50544470 | 50546275 | 50544470 | ID=MS.gene050066.t1;Parent=MS.gene050066 |
| chr5.4 | exon | 50545814 | 50546275 | 50545814 | ID=MS.gene050066.t1.exon1;Parent=MS.gene050066.t1 |
| chr5.4 | CDS | 50545814 | 50546275 | 50545814 | ID=cds.MS.gene050066.t1;Parent=MS.gene050066.t1 |
| chr5.4 | exon | 50545090 | 50545500 | 50545090 | ID=MS.gene050066.t1.exon2;Parent=MS.gene050066.t1 |
| chr5.4 | CDS | 50545090 | 50545500 | 50545090 | ID=cds.MS.gene050066.t1;Parent=MS.gene050066.t1 |
| chr5.4 | exon | 50544470 | 50544571 | 50544470 | ID=MS.gene050066.t1.exon3;Parent=MS.gene050066.t1 |
| chr5.4 | CDS | 50544470 | 50544571 | 50544470 | ID=cds.MS.gene050066.t1;Parent=MS.gene050066.t1 |
| Gene Sequence |
| Protein sequence |
