AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050104

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050104.t1 MTR_8g080190 62.613 444 39 7 12 330 257 698 5.97e-161 467
MS.gene050104.t1 MTR_8g080190 68.232 362 23 6 12 283 257 616 1.12e-145 425
MS.gene050104.t1 MTR_3g085650 50.000 448 90 11 10 330 289 729 1.06e-112 344
MS.gene050104.t1 MTR_3g085650 50.000 448 90 11 10 330 289 729 1.41e-112 344
MS.gene050104.t1 MTR_3g085650 50.000 448 90 11 10 330 289 729 3.53e-112 344
MS.gene050104.t1 MTR_3g085650 53.030 396 87 10 10 313 289 677 5.72e-108 330
MS.gene050104.t1 MTR_4g103810 66.216 148 49 1 166 313 225 371 6.64e-62 203
MS.gene050104.t1 MTR_4g103810 66.216 148 49 1 166 313 335 481 1.65e-61 205
MS.gene050104.t1 MTR_2g032060 54.237 118 52 2 171 287 123 239 7.26e-38 137
MS.gene050104.t1 MTR_4g094430 52.542 118 54 2 171 287 123 239 1.79e-36 133
MS.gene050104.t1 MTR_1g075610 56.637 113 47 2 171 282 145 256 2.38e-35 130
MS.gene050104.t1 MTR_6g080470 35.071 211 84 4 126 284 35 244 1.60e-33 128
MS.gene050104.t1 MTR_3g096960 41.341 179 88 5 154 319 128 302 1.83e-33 128
MS.gene050104.t1 MTR_4g007750 53.982 113 50 2 171 282 140 251 3.56e-33 125
MS.gene050104.t1 MTR_3g040520 51.724 116 54 2 169 283 157 271 2.11e-31 123
MS.gene050104.t1 MTR_3g040810 51.724 116 54 2 169 283 155 269 2.33e-31 123
MS.gene050104.t1 MTR_2g085200 46.809 141 68 4 171 306 254 392 6.86e-29 117
MS.gene050104.t1 MTR_2g020210 44.828 145 73 4 167 306 218 360 9.63e-29 116
MS.gene050104.t1 MTR_5g008860 46.479 142 69 4 171 307 260 399 1.84e-28 115
MS.gene050104.t1 MTR_4g061320 56.364 110 45 3 164 273 156 262 6.11e-28 112
MS.gene050104.t1 MTR_4g118780 42.767 159 81 5 153 306 209 362 1.13e-27 113
MS.gene050104.t1 MTR_7g114300 47.015 134 65 4 153 285 212 340 1.53e-27 111
MS.gene050104.t1 MTR_4g078290 47.328 131 63 4 156 285 237 362 1.89e-27 113
MS.gene050104.t1 MTR_7g114300 47.015 134 65 4 153 285 212 340 1.93e-27 111
MS.gene050104.t1 MTR_4g078290 47.328 131 63 4 156 285 237 362 1.94e-27 113
MS.gene050104.t1 MTR_8g099770 48.092 131 62 4 156 285 198 323 2.25e-27 112
MS.gene050104.t1 MTR_7g114300 42.138 159 82 5 153 310 212 361 2.42e-27 112
MS.gene050104.t1 MTR_7g114300 47.015 134 65 4 153 285 212 340 2.84e-27 112
MS.gene050104.t1 MTR_4g087620 54.545 110 47 3 164 273 171 277 9.27e-27 108
MS.gene050104.t1 MTR_8g086000 51.456 103 49 1 171 273 154 255 9.81e-27 108
MS.gene050104.t1 MTR_8g086000 51.456 103 49 1 171 273 197 298 1.30e-26 108
MS.gene050104.t1 MTR_1g081870 42.038 157 79 6 156 306 230 380 2.31e-26 109
MS.gene050104.t1 MTR_6g013030 44.275 131 67 4 156 285 218 343 2.66e-26 109
MS.gene050104.t1 MTR_5g010030 53.153 111 49 3 164 274 157 264 6.49e-26 106
MS.gene050104.t1 MTR_1g098300 45.082 122 62 3 156 276 234 351 7.90e-26 108
MS.gene050104.t1 MTR_3g098760 43.590 156 78 5 156 306 205 355 9.80e-26 107
MS.gene050104.t1 MTR_2g090405 42.759 145 77 4 156 299 249 388 1.59e-25 107
MS.gene050104.t1 MTR_7g078690 41.139 158 82 6 164 320 154 301 1.70e-25 105
MS.gene050104.t1 MTR_4g087620 60.227 88 33 2 164 251 171 256 2.67e-25 103
MS.gene050104.t1 MTR_8g028720 39.241 158 85 6 164 320 153 300 3.72e-25 104
MS.gene050104.t1 MTR_4g109090 42.857 140 73 4 171 305 77 214 4.32e-25 105
MS.gene050104.t1 MTR_4g109090 42.857 140 73 4 171 305 225 362 6.40e-25 105
MS.gene050104.t1 MTR_3g054080 40.741 108 63 1 170 277 133 239 8.89e-25 103
MS.gene050104.t1 MTR_7g011800 44.186 129 66 4 156 283 228 351 9.10e-25 105
MS.gene050104.t1 MTR_3g112210 59.259 81 33 0 171 251 154 234 1.04e-24 103
MS.gene050104.t1 MTR_8g098845 51.351 111 51 3 164 274 168 275 1.21e-24 103
MS.gene050104.t1 MTR_8g461270 45.133 113 60 2 171 282 171 282 7.38e-24 100
MS.gene050104.t1 MTR_3g460950 47.222 108 55 2 163 270 147 252 9.54e-24 100
MS.gene050104.t1 MTR_3g060330 47.222 108 55 2 163 270 147 252 9.54e-24 100
MS.gene050104.t1 MTR_8g092290 49.038 104 51 2 171 273 261 363 1.05e-23 102
MS.gene050104.t1 MTR_7g076030 41.221 131 68 5 164 287 255 383 2.86e-21 94.4
MS.gene050104.t1 MTR_2g005620 33.010 206 76 7 124 271 109 310 2.89e-21 94.0
MS.gene050104.t1 MTR_7g076030 41.221 131 68 5 164 287 148 276 3.40e-21 93.2
MS.gene050104.t1 MTR_7g110060 45.536 112 54 4 163 271 188 295 3.44e-21 94.0
MS.gene050104.t1 MTR_8g012450 47.619 105 52 3 172 276 122 223 3.84e-21 93.6
MS.gene050104.t1 MTR_8g012450 47.619 105 52 3 172 276 122 223 3.88e-21 94.0
MS.gene050104.t1 MTR_7g110060 45.536 112 54 4 163 271 188 295 4.11e-21 93.2
MS.gene050104.t1 MTR_8g432510 44.037 109 58 3 164 271 253 359 6.18e-21 93.6
MS.gene050104.t1 MTR_1g084760 43.103 116 59 4 159 271 184 295 1.76e-20 91.7
MS.gene050104.t1 MTR_2g021330 48.673 113 52 5 164 272 141 251 2.99e-20 91.7
MS.gene050104.t1 MTR_2g021330 49.123 114 50 6 164 272 141 251 3.90e-20 90.9
MS.gene050104.t1 MTR_3g089510 46.903 113 54 4 164 272 129 239 6.01e-20 90.9
MS.gene050104.t1 MTR_3g089510 46.903 113 54 4 164 272 141 251 6.21e-20 90.9
MS.gene050104.t1 MTR_5g026960 45.133 113 55 4 172 282 122 229 9.56e-20 89.7
MS.gene050104.t1 MTR_1g086370 43.750 112 56 4 163 271 188 295 1.14e-19 89.4
MS.gene050104.t1 MTR_1g086370 43.750 112 56 4 163 271 155 262 1.16e-19 89.0
MS.gene050104.t1 MTR_4g117490 46.903 113 54 5 164 272 141 251 1.37e-19 89.7
MS.gene050104.t1 MTR_6g079470 45.455 121 56 5 156 271 199 314 1.39e-19 89.7
MS.gene050104.t1 MTR_1g086370 43.750 112 56 4 163 271 69 176 1.68e-19 87.4
MS.gene050104.t1 MTR_4g117490 47.368 114 52 6 164 272 141 251 2.09e-19 89.0
MS.gene050104.t1 MTR_8g461040 48.718 117 53 6 164 275 142 256 4.27e-19 88.6
MS.gene050104.t1 MTR_5g091680 48.673 113 52 4 164 272 138 248 5.06e-19 87.8
MS.gene050104.t1 MTR_2g072840 48.673 113 51 5 171 278 57 167 5.32e-19 87.8
MS.gene050104.t1 MTR_5g091680 48.673 113 52 4 164 272 136 246 5.41e-19 87.8
MS.gene050104.t1 MTR_5g091680 48.673 113 52 4 164 272 138 248 5.44e-19 87.8
MS.gene050104.t1 MTR_2g072840 48.673 113 51 5 171 278 147 257 5.58e-19 88.2
MS.gene050104.t1 MTR_5g091680 48.673 113 52 4 164 272 138 248 5.75e-19 87.8
MS.gene050104.t1 MTR_2g072840 47.788 113 52 5 171 278 147 257 7.23e-19 87.4
MS.gene050104.t1 MTR_8g106960 47.170 106 49 4 171 271 240 343 7.84e-19 87.8
MS.gene050104.t1 MTR_8g106960 47.170 106 49 4 171 271 240 343 8.95e-19 87.4
MS.gene050104.t1 MTR_8g071230 37.255 153 85 7 138 288 90 233 1.14e-18 86.7
MS.gene050104.t1 MTR_2g016490 39.474 114 66 3 159 271 149 260 2.78e-17 82.0
MS.gene050104.t1 MTR_2g083940 39.474 114 66 3 159 271 197 308 3.34e-17 82.4
MS.gene050104.t1 MTR_2g083940 39.474 114 66 3 159 271 143 254 3.47e-17 82.0
MS.gene050104.t1 MTR_4g061330 44.444 99 50 3 208 306 2 95 1.05e-16 77.0
MS.gene050104.t1 MTR_8g103240 49.351 77 38 1 208 284 285 360 3.78e-15 76.3
MS.gene050104.t1 MTR_3g060390 39.815 108 47 3 163 270 129 218 4.41e-15 75.5
MS.gene050104.t1 MTR_3g460980 39.815 108 47 3 163 270 133 222 4.72e-15 75.5
MS.gene050104.t1 MTR_6g087920 44.444 81 44 1 208 288 272 351 1.89e-14 73.9
MS.gene050104.t1 MTR_8g070930 38.261 115 63 3 165 275 256 366 1.06e-13 72.4
MS.gene050104.t1 MTR_2g078740 27.273 198 117 4 70 249 22 210 1.08e-13 72.4
MS.gene050104.t1 MTR_2g078740 27.273 198 117 4 70 249 22 210 1.09e-13 72.4
MS.gene050104.t1 MTR_2g078740 27.273 198 117 4 70 249 22 210 1.13e-13 72.4
MS.gene050104.t1 MTR_6g090470 34.028 144 83 5 163 302 179 314 6.33e-13 69.3
MS.gene050104.t1 MTR_4g061130 42.342 111 46 4 164 274 155 247 8.22e-13 68.9
MS.gene050104.t1 MTR_4g095400 36.275 102 61 4 171 270 202 301 1.52e-12 68.2
MS.gene050104.t1 MTR_4g095670 35.294 102 62 4 171 270 233 332 1.90e-12 68.2
MS.gene050104.t1 MTR_8g093730 27.273 154 92 5 163 312 413 550 4.55e-12 67.4
MS.gene050104.t1 MTR_5g015830 34.951 103 61 5 171 270 228 327 7.20e-12 66.2
MS.gene050104.t1 MTR_3g073250 28.188 149 93 4 166 313 384 519 1.62e-11 65.5
MS.gene050104.t1 MTR_1g100250 31.868 91 60 2 163 253 525 613 3.35e-11 64.7
MS.gene050104.t1 MTR_3g096230 32.530 83 55 1 171 253 365 446 7.01e-11 63.5
MS.gene050104.t1 MTR_3g096230 32.967 91 59 2 163 253 358 446 7.25e-11 63.5
MS.gene050104.t1 MTR_8g086010 30.435 161 82 5 125 274 168 309 9.90e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050104.t1 AT1G67580 47.344 433 97 8 24 330 292 719 2.06e-109 335
MS.gene050104.t1 AT1G67580 47.344 433 97 8 24 330 292 719 2.06e-109 335
MS.gene050104.t1 AT5G63370 46.429 224 82 3 138 326 257 477 2.93e-62 206
MS.gene050104.t1 AT5G63370 46.429 224 82 3 138 326 257 477 2.93e-62 206
MS.gene050104.t1 AT5G63370 46.847 222 80 3 138 324 391 609 7.07e-62 207
MS.gene050104.t1 AT5G63370 46.847 222 80 3 138 324 391 609 7.07e-62 207
MS.gene050104.t1 AT5G63370 46.847 222 80 3 138 324 391 609 7.07e-62 207
MS.gene050104.t1 AT5G63370 46.847 222 80 3 138 324 391 609 7.07e-62 207
MS.gene050104.t1 AT5G63370 46.847 222 80 3 138 324 391 609 7.07e-62 207
MS.gene050104.t1 AT5G63370 56.667 150 62 2 138 287 257 403 7.34e-56 187
MS.gene050104.t1 AT5G63370 56.667 150 62 2 138 287 391 537 3.09e-55 189
MS.gene050104.t1 AT5G63370 56.667 150 62 2 138 287 391 537 3.09e-55 189
MS.gene050104.t1 AT3G48750 37.788 217 80 5 125 287 24 239 1.36e-40 144
MS.gene050104.t1 AT2G38620 43.713 167 84 3 125 282 24 189 1.04e-37 135
MS.gene050104.t1 AT1G18040 35.071 211 82 3 127 284 34 242 2.01e-37 138
MS.gene050104.t1 AT1G20930 51.145 131 56 3 171 294 143 272 1.57e-36 134
MS.gene050104.t1 AT1G73690 36.493 211 79 3 127 284 33 241 3.04e-36 135
MS.gene050104.t1 AT1G76540 53.982 113 50 2 171 282 141 252 5.68e-35 129
MS.gene050104.t1 AT2G38620 54.867 113 49 2 171 282 140 251 3.10e-34 127
MS.gene050104.t1 AT5G64960 51.969 127 59 2 169 294 105 230 6.32e-34 130
MS.gene050104.t1 AT5G64960 51.969 127 59 2 169 294 158 283 8.39e-34 130
MS.gene050104.t1 AT5G63610 42.593 162 80 4 136 284 115 276 9.41e-34 129
MS.gene050104.t1 AT5G10270 48.507 134 67 2 169 301 158 290 2.59e-33 129
MS.gene050104.t1 AT3G54180 55.752 113 48 2 171 282 138 249 5.76e-33 124
MS.gene050104.t1 AT1G66750 34.123 211 84 3 127 284 35 243 3.54e-32 123
MS.gene050104.t1 AT2G38620 47.748 111 57 1 167 276 136 246 9.17e-30 114
MS.gene050104.t1 AT2G38620 47.748 111 57 1 167 276 136 246 9.17e-30 114
MS.gene050104.t1 AT1G54610 53.271 107 48 2 171 276 238 343 3.29e-27 112
MS.gene050104.t1 AT1G54610 53.271 107 48 2 171 276 238 343 3.29e-27 112
MS.gene050104.t1 AT1G54610 53.271 107 48 2 171 276 238 343 3.29e-27 112
MS.gene050104.t1 AT3G59790 54.955 111 45 4 164 273 176 282 3.45e-27 110
MS.gene050104.t1 AT1G33770 49.153 118 57 3 171 287 261 376 4.22e-27 112
MS.gene050104.t1 AT1G74330 46.617 133 63 4 156 285 229 356 8.37e-27 111
MS.gene050104.t1 AT1G74330 46.617 133 63 4 156 285 229 356 9.12e-27 111
MS.gene050104.t1 AT1G74330 46.617 133 63 4 156 285 229 356 1.00e-26 111
MS.gene050104.t1 AT5G50860 41.420 169 86 6 156 323 222 378 1.05e-26 110
MS.gene050104.t1 AT5G50860 47.328 131 63 4 156 285 222 347 1.13e-26 110
MS.gene050104.t1 AT1G53050 49.138 116 56 3 171 285 254 367 1.21e-26 110
MS.gene050104.t1 AT1G53050 49.138 116 56 3 171 285 254 367 1.21e-26 110
MS.gene050104.t1 AT4G11330 55.046 109 46 3 164 272 159 264 1.28e-26 108
MS.gene050104.t1 AT1G18670 45.455 132 65 4 156 285 239 365 3.17e-26 109
MS.gene050104.t1 AT1G71530 51.402 107 50 2 171 276 267 372 3.20e-26 109
MS.gene050104.t1 AT1G71530 51.402 107 50 2 171 276 267 372 3.49e-26 108
MS.gene050104.t1 AT1G18670 45.455 132 65 4 156 285 239 365 3.75e-26 109
MS.gene050104.t1 AT1G18670 45.455 132 65 4 156 285 239 365 3.82e-26 109
MS.gene050104.t1 AT1G71530 51.402 107 50 2 171 276 267 372 3.97e-26 108
MS.gene050104.t1 AT3G01085 39.007 141 80 3 171 306 235 374 8.53e-26 108
MS.gene050104.t1 AT3G01085 39.007 141 80 3 171 306 235 374 8.99e-26 108
MS.gene050104.t1 AT3G01085 39.007 141 80 3 171 306 235 374 8.99e-26 108
MS.gene050104.t1 AT3G45640 51.351 111 51 3 164 274 154 261 9.22e-26 106
MS.gene050104.t1 AT2G43790 54.128 109 47 3 164 272 179 284 1.22e-25 106
MS.gene050104.t1 AT1G07880 52.252 111 50 3 164 274 149 256 1.50e-25 105
MS.gene050104.t1 AT1G10210 50.000 110 53 2 164 273 148 255 3.62e-25 104
MS.gene050104.t1 AT1G10210 50.000 110 53 2 164 273 148 255 3.62e-25 104
MS.gene050104.t1 AT1G10210 50.000 110 53 2 164 273 148 255 3.62e-25 104
MS.gene050104.t1 AT1G59580 34.884 215 108 5 70 260 39 245 3.65e-25 104
MS.gene050104.t1 AT1G59580 34.884 215 108 5 70 260 39 245 3.65e-25 104
MS.gene050104.t1 AT5G39420 44.538 119 63 3 171 288 225 341 3.98e-25 106
MS.gene050104.t1 AT1G03740 42.657 143 73 5 171 307 333 472 4.79e-25 106
MS.gene050104.t1 AT1G03740 42.657 143 73 5 171 307 333 472 5.30e-25 106
MS.gene050104.t1 AT1G01560 51.351 111 51 3 164 274 156 263 5.95e-25 103
MS.gene050104.t1 AT1G01560 51.351 111 51 3 164 274 156 263 6.44e-25 103
MS.gene050104.t1 AT1G07880 57.955 88 35 2 164 251 149 234 7.00e-25 101
MS.gene050104.t1 AT5G44290 46.565 131 64 4 156 285 245 370 8.00e-25 105
MS.gene050104.t1 AT5G44290 46.565 131 64 4 156 285 245 370 8.00e-25 105
MS.gene050104.t1 AT5G44290 46.565 131 64 4 156 285 245 370 8.00e-25 105
MS.gene050104.t1 AT5G44290 46.565 131 64 4 156 285 245 370 8.00e-25 105
MS.gene050104.t1 AT5G44290 46.565 131 64 4 156 285 245 370 8.00e-25 105
MS.gene050104.t1 AT4G10010 44.030 134 69 4 156 288 84 212 8.11e-25 104
MS.gene050104.t1 AT5G44290 49.138 116 56 3 171 285 257 370 8.76e-25 105
MS.gene050104.t1 AT5G44290 49.138 116 56 3 171 285 257 370 1.03e-24 105
MS.gene050104.t1 AT4G10010 44.030 134 69 4 156 288 264 392 1.39e-24 104
MS.gene050104.t1 AT4G01370 51.351 111 51 3 164 274 159 266 1.44e-24 102
MS.gene050104.t1 AT2G46070 48.649 111 54 3 164 274 157 264 2.25e-24 101
MS.gene050104.t1 AT2G46070 48.649 111 54 3 164 274 157 264 2.59e-24 102
MS.gene050104.t1 AT4G36450 58.025 81 31 1 171 251 154 231 2.59e-24 102
MS.gene050104.t1 AT2G46070 48.649 111 54 3 164 274 191 298 2.64e-24 102
MS.gene050104.t1 AT4G22940 47.273 110 54 3 169 276 222 329 2.69e-24 103
MS.gene050104.t1 AT1G01560 57.955 88 35 2 164 251 156 241 2.70e-24 100
MS.gene050104.t1 AT1G01560 57.955 88 35 2 164 251 156 241 2.70e-24 100
MS.gene050104.t1 AT4G22940 46.429 112 56 3 167 276 220 329 2.78e-24 103
MS.gene050104.t1 AT3G05050 45.082 122 62 3 156 276 246 363 3.81e-24 103
MS.gene050104.t1 AT3G05050 45.082 122 62 3 156 276 246 363 3.81e-24 103
MS.gene050104.t1 AT3G05050 45.082 122 62 3 156 276 246 363 3.81e-24 103
MS.gene050104.t1 AT1G71530 55.556 90 39 1 171 259 267 356 4.86e-24 101
MS.gene050104.t1 AT2G18170 56.790 81 35 0 171 251 154 234 1.10e-23 100
MS.gene050104.t1 AT1G09600 49.138 116 56 3 171 285 283 396 5.79e-23 100
MS.gene050104.t1 AT3G61160 46.789 109 55 3 164 271 216 322 1.19e-22 97.4
MS.gene050104.t1 AT3G61160 46.789 109 55 3 164 271 223 329 1.30e-22 97.4
MS.gene050104.t1 AT3G61160 46.789 109 55 3 164 271 216 322 1.63e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT1G09840 34.466 206 73 7 124 271 102 303 1.94e-22 97.4
MS.gene050104.t1 AT3G61160 46.789 109 55 3 164 271 216 322 2.14e-22 97.4
MS.gene050104.t1 AT3G61160 46.789 109 55 3 164 271 223 329 2.14e-22 97.4
MS.gene050104.t1 AT3G61160 46.789 109 55 3 164 271 216 322 2.75e-22 97.1
MS.gene050104.t1 AT1G09840 46.429 112 53 4 163 271 69 176 9.25e-22 94.0
MS.gene050104.t1 AT1G57870 33.010 206 76 6 124 271 101 302 1.08e-21 95.5
MS.gene050104.t1 AT1G57870 33.010 206 76 6 124 271 101 302 1.08e-21 95.5
MS.gene050104.t1 AT1G57870 33.010 206 76 6 124 271 101 302 1.08e-21 95.5
MS.gene050104.t1 AT1G57870 33.010 206 76 6 124 271 101 302 1.39e-21 95.1
MS.gene050104.t1 AT1G57700 48.598 107 53 2 171 276 266 371 1.51e-21 95.9
MS.gene050104.t1 AT4G00720 46.789 109 55 3 164 271 252 358 1.91e-21 95.1
MS.gene050104.t1 AT4G13020 44.203 138 66 6 167 304 126 252 2.39e-21 94.0
MS.gene050104.t1 AT4G13020 45.312 128 61 5 167 294 117 235 2.44e-21 94.0
MS.gene050104.t1 AT4G13020 45.312 128 61 5 167 294 117 235 3.19e-21 93.6
MS.gene050104.t1 AT4G13020 45.312 128 61 5 167 294 117 235 3.29e-21 94.0
MS.gene050104.t1 AT4G13020 45.312 128 61 5 167 294 117 235 3.45e-21 94.0
MS.gene050104.t1 AT4G19110 46.667 105 53 3 172 276 66 167 3.56e-21 93.6
MS.gene050104.t1 AT4G13020 44.203 138 66 6 167 304 126 252 3.72e-21 94.0
MS.gene050104.t1 AT4G13020 45.312 128 61 5 167 294 125 243 4.27e-21 94.0
MS.gene050104.t1 AT4G13020 45.312 128 61 5 167 294 125 243 4.29e-21 94.0
MS.gene050104.t1 AT4G19110 46.667 105 53 3 172 276 122 223 6.44e-21 93.6
MS.gene050104.t1 AT4G19110 46.667 105 53 3 172 276 122 223 6.66e-21 93.6
MS.gene050104.t1 AT5G19010 46.269 134 61 8 164 291 141 269 3.27e-20 91.7
MS.gene050104.t1 AT4G18710 42.982 114 62 3 159 271 143 254 3.59e-20 89.0
MS.gene050104.t1 AT5G45430 46.667 105 53 3 172 276 122 223 3.99e-20 91.3
MS.gene050104.t1 AT5G45430 46.667 105 53 3 172 276 122 223 4.01e-20 91.3
MS.gene050104.t1 AT3G05840 43.103 116 59 4 159 271 182 293 4.03e-20 90.9
MS.gene050104.t1 AT3G05840 43.103 116 59 4 159 271 182 293 4.03e-20 90.9
MS.gene050104.t1 AT3G18040 47.619 105 50 3 171 271 57 160 5.52e-20 90.5
MS.gene050104.t1 AT5G26751 43.103 116 59 4 159 271 178 289 6.03e-20 90.1
MS.gene050104.t1 AT3G18040 47.619 105 50 3 171 271 145 248 8.26e-20 90.5
MS.gene050104.t1 AT3G18040 47.619 105 50 3 171 271 140 243 9.03e-20 90.1
MS.gene050104.t1 AT3G18040 48.113 106 48 4 171 271 254 357 9.67e-20 90.5
MS.gene050104.t1 AT4G18710 42.982 114 62 3 159 271 149 260 1.11e-19 89.4
MS.gene050104.t1 AT3G18040 48.113 106 48 4 171 271 254 357 1.36e-19 90.1
MS.gene050104.t1 AT5G14640 42.857 112 57 4 163 271 187 294 1.71e-19 89.0
MS.gene050104.t1 AT5G14640 42.857 112 57 4 163 271 187 294 1.71e-19 89.0
MS.gene050104.t1 AT2G42880 46.903 113 54 5 164 272 141 251 3.19e-19 89.0
MS.gene050104.t1 AT2G42880 46.903 113 54 5 164 272 141 251 3.70e-19 88.2
MS.gene050104.t1 AT3G14720 49.091 110 50 5 171 275 147 255 4.62e-19 88.6
MS.gene050104.t1 AT1G73670 47.788 113 51 6 164 271 206 315 4.89e-19 88.2
MS.gene050104.t1 AT1G53510 49.091 110 50 5 171 275 147 255 6.83e-19 87.8
MS.gene050104.t1 AT3G14720 49.091 110 50 5 171 275 147 255 7.14e-19 87.4
MS.gene050104.t1 AT3G14720 49.091 110 50 5 171 275 147 255 7.14e-19 87.4
MS.gene050104.t1 AT2G01450 47.170 106 51 4 171 272 138 242 8.82e-19 87.4
MS.gene050104.t1 AT2G01450 47.170 106 51 4 171 272 138 242 8.82e-19 87.4
MS.gene050104.t1 AT2G01450 47.170 106 51 4 171 272 138 242 8.82e-19 87.4
MS.gene050104.t1 AT2G01450 47.170 106 51 4 171 272 138 242 8.82e-19 87.4
MS.gene050104.t1 AT1G18150 46.429 112 54 5 164 271 220 329 1.27e-18 87.0
MS.gene050104.t1 AT1G18150 46.429 112 54 5 164 271 220 329 1.27e-18 87.0
MS.gene050104.t1 AT1G18150 46.429 112 54 5 164 271 220 329 1.27e-18 87.0
MS.gene050104.t1 AT1G06390 40.517 116 62 4 159 271 179 290 8.52e-18 84.0
MS.gene050104.t1 AT1G06390 40.517 116 62 4 159 271 179 290 8.52e-18 84.0
MS.gene050104.t1 AT2G30980 38.596 114 67 3 159 271 181 292 6.52e-17 81.3
MS.gene050104.t1 AT4G28980 48.148 81 41 1 208 288 290 369 2.11e-16 80.1
MS.gene050104.t1 AT4G28980 48.148 81 41 1 208 288 290 369 2.11e-16 80.1
MS.gene050104.t1 AT4G28980 48.148 81 41 1 208 288 290 369 2.11e-16 80.1
MS.gene050104.t1 AT2G23080 36.275 102 61 4 171 270 147 246 4.83e-13 69.3
MS.gene050104.t1 AT4G26070 35.238 105 67 1 163 267 178 281 6.70e-13 69.3
MS.gene050104.t1 AT4G26070 35.238 105 67 1 163 267 178 281 6.70e-13 69.3
MS.gene050104.t1 AT4G26070 35.238 105 67 1 163 267 165 268 6.97e-13 68.9
MS.gene050104.t1 AT4G26070 35.238 105 67 1 163 267 177 280 6.98e-13 68.9
MS.gene050104.t1 AT5G35980 44.444 90 43 3 165 251 239 324 7.10e-13 70.1
MS.gene050104.t1 AT2G23080 36.275 102 61 4 171 270 147 246 7.45e-13 68.6
MS.gene050104.t1 AT5G35980 44.444 90 43 3 165 251 204 289 7.83e-13 69.7
MS.gene050104.t1 AT5G35980 44.444 90 43 3 165 251 239 324 8.37e-13 69.7
MS.gene050104.t1 AT5G67380 36.275 102 61 4 171 270 190 289 8.68e-13 68.9
MS.gene050104.t1 AT5G67380 36.275 102 61 4 171 270 223 322 8.82e-13 68.9
MS.gene050104.t1 AT4G26070 35.238 105 67 1 163 267 178 281 1.00e-12 68.2
MS.gene050104.t1 AT3G50000 32.593 135 73 4 171 288 217 350 1.25e-12 68.6
MS.gene050104.t1 AT4G29810 32.704 159 90 6 164 313 181 331 1.75e-12 67.8
MS.gene050104.t1 AT4G29810 32.704 159 90 6 164 313 190 340 1.96e-12 67.8
MS.gene050104.t1 AT4G29810 33.566 143 83 5 164 302 190 324 1.98e-12 67.8
MS.gene050104.t1 AT2G23070 35.294 102 62 4 171 270 245 344 2.14e-12 68.2
MS.gene050104.t1 AT5G56580 32.919 161 97 5 163 319 181 334 2.30e-12 67.4
MS.gene050104.t1 AT1G53570 26.000 150 99 5 163 312 328 465 1.36e-11 65.9
MS.gene050104.t1 AT1G53570 26.000 150 99 5 163 312 328 465 1.38e-11 65.9
MS.gene050104.t1 AT1G18350 25.896 251 156 7 71 312 74 303 1.71e-11 64.7
MS.gene050104.t1 AT1G53570 26.000 150 99 5 163 312 328 465 1.99e-11 65.5
MS.gene050104.t1 AT1G53570 26.000 150 99 5 163 312 328 465 1.99e-11 65.5
MS.gene050104.t1 AT1G53570 26.000 150 99 5 163 312 328 465 2.04e-11 65.5
MS.gene050104.t1 AT1G53570 26.000 150 99 5 163 312 328 465 2.06e-11 65.5
MS.gene050104.t1 AT1G53165 34.615 78 51 0 172 249 133 210 2.42e-11 65.1
MS.gene050104.t1 AT1G53165 34.615 78 51 0 172 249 133 210 2.59e-11 65.1
MS.gene050104.t1 AT1G53165 34.615 78 51 0 172 249 133 210 2.84e-11 65.1
MS.gene050104.t1 AT3G20860 39.394 99 54 4 153 251 110 202 4.77e-11 63.9
MS.gene050104.t1 AT5G18700 40.244 82 48 1 171 251 117 198 4.83e-11 64.3

Find 78 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGGCACCTGAACTTCTTC+TGG 0.143737 4.4:+16361599 MS.gene050104:intron
GAGACTAACTCCTGAGGTTT+TGG 0.229977 4.4:+16360290 MS.gene050104:CDS
GCTTCCCGCTGACTTCTCTT+AGG 0.250993 4.4:+16360750 MS.gene050104:CDS
TGAGGTTGAGCTGGAGGTTC+AGG 0.276655 4.4:-16360566 None:intergenic
ATGACAACTGGGTGCTTCAT+AGG 0.296665 4.4:+16360984 MS.gene050104:CDS
CCTGGCCATATTGTTTCATT+TGG 0.310614 4.4:-16361900 None:intergenic
TTTGGTTTGGCTCGTCAATA+TGG 0.316228 4.4:+16361064 MS.gene050104:CDS
CTCACCTGGTGGTTACTCTT+TGG 0.322663 4.4:+16361107 MS.gene050104:CDS
AAGAACGGTCAACATGCTTC+AGG 0.324931 4.4:+16360589 MS.gene050104:CDS
AGCCCCAATGATTCTAAAAT+AGG 0.327458 4.4:+16360339 MS.gene050104:CDS
ATGATGAGGAAATGCCTAAA+AGG 0.353294 4.4:+16360262 MS.gene050104:CDS
ATCAGAAAAGGATGACTATA+TGG 0.359590 4.4:+16360458 MS.gene050104:CDS
GCACTCCAAATGAAACAATA+TGG 0.372793 4.4:+16361895 MS.gene050104:CDS
AGCATTAAAGAAGGTCAAAA+TGG 0.373419 4.4:+16360712 MS.gene050104:CDS
TCCTTGACATCAACTATGTA+TGG 0.382483 4.4:-16360802 None:intergenic
TTCTTCCGAATCAGATGATC+TGG 0.390201 4.4:-16360382 None:intergenic
AGGCATGAATTCTTTGCTCT+TGG 0.397720 4.4:-16362402 None:intergenic
AATCTGAAGATGACATTGAT+AGG 0.405819 4.4:+16360534 MS.gene050104:CDS
GTAACCACCAGGTGAGTATA+TGG 0.411054 4.4:-16361100 None:intergenic
GGCATGAATTCTTTGCTCTT+GGG 0.415643 4.4:-16362401 None:intergenic
ACCGTTCTTTGAGGTTGAGC+TGG 0.419434 4.4:-16360575 None:intergenic
CACCCCTGTTATTTAAAAGC+AGG 0.421512 4.4:-16361024 None:intergenic
GAAGTATCTTCAATGACAAC+TGG 0.425198 4.4:+16360972 MS.gene050104:intron
AATGGCTGAGCTATTGTCTA+AGG 0.431090 4.4:+16361671 MS.gene050104:CDS
AGGGCACCTGAACTTCTTCT+GGG 0.435368 4.4:+16361600 MS.gene050104:intron
CTTCCCGCTGACTTCTCTTA+GGG 0.457650 4.4:+16360751 MS.gene050104:CDS
GTGGTCTCTTGGTTGTATAA+TGG 0.472632 4.4:+16361653 MS.gene050104:CDS
TTGGTTTGGCTCGTCAATAT+GGG 0.480877 4.4:+16361065 MS.gene050104:CDS
GCTATTGATATGTGGTCTCT+TGG 0.481064 4.4:+16361642 MS.gene050104:CDS
TCCTGGTATTGAATCAGAAA+AGG 0.498860 4.4:+16360446 MS.gene050104:CDS
TGGTGGTTACTCTTTGGTAC+AGG 0.500836 4.4:+16361113 MS.gene050104:CDS
CTGTCCTGAGCATGTTGAGC+AGG 0.505934 4.4:-16362431 None:intergenic
TCGAGCCAGATCATCTGATT+CGG 0.512465 4.4:+16360377 MS.gene050104:CDS
TGACAACTGGGTGCTTCATA+GGG 0.515315 4.4:+16360985 MS.gene050104:CDS
GACAAAATTGACCTTGACTC+AGG 0.517202 4.4:-16361936 None:intergenic
ACCCCTGTTATTTAAAAGCA+GGG 0.518427 4.4:-16361023 None:intergenic
GCATGTTGAGCAGGAAATGT+AGG 0.519216 4.4:-16362422 None:intergenic
AGCATGTTGACCGTTCTTTG+AGG 0.520209 4.4:-16360584 None:intergenic
TCTAGTGGCGATGGACATCC+TGG 0.524669 4.4:+16360429 MS.gene050104:CDS
CTTTAATGCTACAACTTCCC+CGG 0.528008 4.4:-16360699 None:intergenic
ATTCTTTGCTCTTGGGAGAG+AGG 0.530016 4.4:-16362394 None:intergenic
TTTCCTGCCACATCATTCAC+TGG 0.532432 4.4:+16362177 MS.gene050104:CDS
CTGCTCAACATGCTCAGGAC+AGG 0.534151 4.4:+16362432 MS.gene050104:CDS
ATTTCCTGCTCAACATGCTC+AGG 0.542065 4.4:+16362427 MS.gene050104:CDS
ACTCTAGTCTCCAAAACCTC+AGG 0.549774 4.4:-16360300 None:intergenic
CCCAATGATTCTAAAATAGG+TGG 0.552856 4.4:+16360342 MS.gene050104:CDS
CCAAATGAAACAATATGGCC+AGG 0.557752 4.4:+16361900 MS.gene050104:CDS
CAACTATGTATGGGTGGTGA+AGG 0.560017 4.4:-16360792 None:intergenic
GGGAGAACGTCTAGTGGCGA+TGG 0.560177 4.4:+16360420 MS.gene050104:CDS
AGGAAATGCCTAAAAGGAAG+AGG 0.561761 4.4:+16360268 MS.gene050104:CDS
GTTCTTTGAGGTTGAGCTGG+AGG 0.563263 4.4:-16360572 None:intergenic
CGCCACTAGACGTTCTCCCA+TGG 0.567512 4.4:-16360416 None:intergenic
GGAAGTTGTAGCATTAAAGA+AGG 0.567586 4.4:+16360703 MS.gene050104:CDS
AGGTGAGTATATGGTTTCAA+AGG 0.575895 4.4:-16361091 None:intergenic
AGAACGGTCAACATGCTTCA+GGG 0.577075 4.4:+16360590 MS.gene050104:CDS
CCTTGACATCAACTATGTAT+GGG 0.580868 4.4:-16360801 None:intergenic
AAAGAAGGTCAAAATGGAGA+AGG 0.584449 4.4:+16360718 MS.gene050104:CDS
TTTCCCTAAGAGAAGTCAGC+GGG 0.585005 4.4:-16360754 None:intergenic
CAGGAAGCTGAGCAGCCAGA+AGG 0.586301 4.4:+16360154 MS.gene050104:CDS
ACTCAACAGCTATTGATATG+TGG 0.588009 4.4:+16361634 MS.gene050104:CDS
TCCAGCTCAACCTCAAAGAA+CGG 0.599078 4.4:+16360574 MS.gene050104:CDS
GGGCACCTGAACTTCTTCTG+GGG 0.603629 4.4:+16361601 MS.gene050104:intron
AAGAAAGAAGTGTTAACCAT+GGG 0.612803 4.4:+16360400 MS.gene050104:CDS
AACCATGGGAGAACGTCTAG+TGG 0.620965 4.4:+16360414 MS.gene050104:CDS
GATCCAGTGAATGATGTGGC+AGG 0.627509 4.4:-16362180 None:intergenic
GGCACCTGAACTTCTTCTGG+GGG 0.633122 4.4:+16361602 MS.gene050104:CDS
GGGTGAGATTCTCAATGATG+AGG 0.634911 4.4:+16360248 MS.gene050104:intron
GAAGAAAGAAGTGTTAACCA+TGG 0.634994 4.4:+16360399 MS.gene050104:CDS
TCTCAAAATTACCTGAGTCA+AGG 0.636611 4.4:+16361925 MS.gene050104:CDS
TATATGGACATTGATGTTCG+AGG 0.639759 4.4:+16360474 MS.gene050104:CDS
TGTACCAAAGAGTAACCACC+AGG 0.641674 4.4:-16361111 None:intergenic
TTTGAAACCATATACTCACC+TGG 0.644910 4.4:+16361093 MS.gene050104:CDS
GAAACCATATACTCACCTGG+TGG 0.687703 4.4:+16361096 MS.gene050104:CDS
ATTTCCCTAAGAGAAGTCAG+CGG 0.691703 4.4:-16360755 None:intergenic
GAAGAGGAGACTAACTCCTG+AGG 0.695997 4.4:+16360284 MS.gene050104:CDS
AAGTATCTTCAATGACAACT+GGG 0.704247 4.4:+16360973 MS.gene050104:intron
TGACATCAACTATGTATGGG+TGG 0.715859 4.4:-16360798 None:intergenic
TGGAGATCCAGTGAATGATG+TGG 0.720894 4.4:-16362184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATCTATTACATATAT+TGG + chr4.4:16361179-16361198 MS.gene050104:intron 10.0%
!! ATTAATTAAATTAGCAACAC+AGG - chr4.4:16361484-16361503 None:intergenic 20.0%
!! TTAATTAAATTAGCAACACA+GGG - chr4.4:16361483-16361502 None:intergenic 20.0%
!!! AAAAATTTGTGATTTTGGTT+TGG + chr4.4:16361051-16361070 MS.gene050104:CDS 20.0%
! AAATAATTGACAAACACAGT+TGG - chr4.4:16361746-16361765 None:intergenic 25.0%
! AACTGTGTTTGTCAATTATT+TGG + chr4.4:16361745-16361764 MS.gene050104:intron 25.0%
! CAAATATTAATCTTGCAAAC+TGG + chr4.4:16361343-16361362 MS.gene050104:intron 25.0%
! CAGTTTGCAAGATTAATATT+TGG - chr4.4:16361345-16361364 None:intergenic 25.0%
! GAAATATATCTTCTCAAGAT+GGG + chr4.4:16360197-16360216 MS.gene050104:intron 25.0%
!! CATGATCTTTAAAGGATTAA+TGG + chr4.4:16360880-16360899 MS.gene050104:intron 25.0%
!! GAGCTAAAAATTTGTGATTT+TGG + chr4.4:16361046-16361065 MS.gene050104:CDS 25.0%
!!! TAAGTTTTATTCAATGCAAC+AGG - chr4.4:16361281-16361300 None:intergenic 25.0%
!!! TATTTTGTTTGCAGATTTTC+AGG + chr4.4:16361865-16361884 MS.gene050104:intron 25.0%
AAAATGGAGAAGGAAAAAGA+AGG + chr4.4:16360728-16360747 MS.gene050104:CDS 30.0%
AAACATTGACCTAAAGGAAA+GGG - chr4.4:16361382-16361401 None:intergenic 30.0%
AACCGTTGTTCAATGAAAAA+CGG + chr4.4:16361694-16361713 MS.gene050104:CDS 30.0%
AAGTATCTTCAATGACAACT+GGG + chr4.4:16360973-16360992 MS.gene050104:intron 30.0%
AATCTGAAGATGACATTGAT+AGG + chr4.4:16360534-16360553 MS.gene050104:CDS 30.0%
ACAGTCAATGTCTTCAATAA+AGG - chr4.4:16361987-16362006 None:intergenic 30.0%
ACATGGAACATGATCTTTAA+AGG + chr4.4:16360872-16360891 MS.gene050104:intron 30.0%
AGACTTAACAAGATAGATGA+AGG + chr4.4:16360638-16360657 MS.gene050104:intron 30.0%
AGATAGATGAAGGAACATAA+CGG + chr4.4:16360648-16360667 MS.gene050104:intron 30.0%
AGCATTAAAGAAGGTCAAAA+TGG + chr4.4:16360712-16360731 MS.gene050104:CDS 30.0%
ATAAGAGATCATTTACCTGA+TGG + chr4.4:16361560-16361579 MS.gene050104:intron 30.0%
ATCAGAAAAGGATGACTATA+TGG + chr4.4:16360458-16360477 MS.gene050104:CDS 30.0%
CGAAATATATCTTCTCAAGA+TGG + chr4.4:16360196-16360215 MS.gene050104:intron 30.0%
CTTAATACTAGAGTGAATTG+TGG - chr4.4:16362302-16362321 None:intergenic 30.0%
GGTTGTCTATATGTTTATCA+GGG + chr4.4:16361581-16361600 MS.gene050104:intron 30.0%
GTATGTAAACATTGACCTAA+AGG - chr4.4:16361388-16361407 None:intergenic 30.0%
TAAACATATAGACAACCATC+AGG - chr4.4:16361578-16361597 None:intergenic 30.0%
TAAACATTGACCTAAAGGAA+AGG - chr4.4:16361383-16361402 None:intergenic 30.0%
TAACCATGAAAATACTGTCA+AGG - chr4.4:16360846-16360865 None:intergenic 30.0%
TATACCTGAAAGGAACATTT+CGG - chr4.4:16362139-16362158 None:intergenic 30.0%
TGGTTGTCTATATGTTTATC+AGG + chr4.4:16361580-16361599 MS.gene050104:intron 30.0%
TTTCATGGTTATGGAATACA+TGG + chr4.4:16360855-16360874 MS.gene050104:intron 30.0%
! TAAGCATTTTCACTTCACTT+TGG - chr4.4:16360929-16360948 None:intergenic 30.0%
! TGACAGTATTTTCATGGTTA+TGG + chr4.4:16360846-16360865 MS.gene050104:intron 30.0%
! TGAGAAGATATATTTCGAGT+TGG - chr4.4:16360193-16360212 None:intergenic 30.0%
!! AACATAACGGTGTTGTATAT+AGG + chr4.4:16360661-16360680 MS.gene050104:intron 30.0%
!! AACCCTGCTTTTAAATAACA+GGG + chr4.4:16361021-16361040 MS.gene050104:CDS 30.0%
!! AAGAAAGAAGTGTTAACCAT+GGG + chr4.4:16360400-16360419 MS.gene050104:CDS 30.0%
!! ACATAACGGTGTTGTATATA+GGG + chr4.4:16360662-16360681 MS.gene050104:intron 30.0%
!! TTCCGTTTTTCATTGAACAA+CGG - chr4.4:16361699-16361718 None:intergenic 30.0%
!!! ACCACCTATTTTAGAATCAT+TGG - chr4.4:16360346-16360365 None:intergenic 30.0%
!!! CACCTATTTTAGAATCATTG+GGG - chr4.4:16360344-16360363 None:intergenic 30.0%
!!! CCACCTATTTTAGAATCATT+GGG - chr4.4:16360345-16360364 None:intergenic 30.0%
!!! TCTAAAATAGGTGGTTTTGA+AGG + chr4.4:16360351-16360370 MS.gene050104:CDS 30.0%
AAACATTGCTGCACATTCAA+AGG - chr4.4:16361419-16361438 None:intergenic 35.0%
AAAGAAGGTCAAAATGGAGA+AGG + chr4.4:16360718-16360737 MS.gene050104:CDS 35.0%
AATCCAGAATCAGAAAGAAC+TGG - chr4.4:16362207-16362226 None:intergenic 35.0%
ACTCAACAGCTATTGATATG+TGG + chr4.4:16361634-16361653 MS.gene050104:CDS 35.0%
AGGAAATCATGAGTACTTAC+TGG - chr4.4:16361967-16361986 None:intergenic 35.0%
AGGTGAGTATATGGTTTCAA+AGG - chr4.4:16361094-16361113 None:intergenic 35.0%
ATCTTCAGATTCTGTATCTG+AGG - chr4.4:16360525-16360544 None:intergenic 35.0%
ATGATGAGGAAATGCCTAAA+AGG + chr4.4:16360262-16360281 MS.gene050104:CDS 35.0%
CCTTGACATCAACTATGTAT+GGG - chr4.4:16360804-16360823 None:intergenic 35.0%
GCACTCCAAATGAAACAATA+TGG + chr4.4:16361895-16361914 MS.gene050104:CDS 35.0%
GGAAGTTGTAGCATTAAAGA+AGG + chr4.4:16360703-16360722 MS.gene050104:CDS 35.0%
TAAAGGAAAGGGTAACTAGT+AGG - chr4.4:16361371-16361390 None:intergenic 35.0%
TACTAGTTACCCTTTCCTTT+AGG + chr4.4:16361370-16361389 MS.gene050104:intron 35.0%
TATATGGACATTGATGTTCG+AGG + chr4.4:16360474-16360493 MS.gene050104:CDS 35.0%
TCCTTGACATCAACTATGTA+TGG - chr4.4:16360805-16360824 None:intergenic 35.0%
TCTCAAAATTACCTGAGTCA+AGG + chr4.4:16361925-16361944 MS.gene050104:CDS 35.0%
TGTGTTAAACACATACGTGA+AGG - chr4.4:16361515-16361534 None:intergenic 35.0%
TTAATGATCCAGCGTTTAGA+AGG + chr4.4:16360946-16360965 MS.gene050104:intron 35.0%
TTCACTTCACTTTGGCTAAA+TGG - chr4.4:16360921-16360940 None:intergenic 35.0%
! AAGCGAACTTTACCTTTTCA+GGG - chr4.4:16362259-16362278 None:intergenic 35.0%
! ACCCCTGTTATTTAAAAGCA+GGG - chr4.4:16361026-16361045 None:intergenic 35.0%
! GAAGTATCTTCAATGACAAC+TGG + chr4.4:16360972-16360991 MS.gene050104:intron 35.0%
! TCCTGGTATTGAATCAGAAA+AGG + chr4.4:16360446-16360465 MS.gene050104:CDS 35.0%
! TCCTTTTCTGATTCAATACC+AGG - chr4.4:16360450-16360469 None:intergenic 35.0%
! TTTGAAACCATATACTCACC+TGG + chr4.4:16361093-16361112 MS.gene050104:CDS 35.0%
!! ACCCTGCTTTTAAATAACAG+GGG + chr4.4:16361022-16361041 MS.gene050104:CDS 35.0%
!! AGCCCCAATGATTCTAAAAT+AGG + chr4.4:16360339-16360358 MS.gene050104:CDS 35.0%
!! CAACCCTGCTTTTAAATAAC+AGG + chr4.4:16361020-16361039 MS.gene050104:CDS 35.0%
!! CCCAATGATTCTAAAATAGG+TGG + chr4.4:16360342-16360361 MS.gene050104:CDS 35.0%
!! GAAGAAAGAAGTGTTAACCA+TGG + chr4.4:16360399-16360418 MS.gene050104:CDS 35.0%
!! TAGCCTTGACAGTATTTTCA+TGG + chr4.4:16360840-16360859 MS.gene050104:intron 35.0%
!! TTGCAGATTTTCAGGATACT+TGG + chr4.4:16361873-16361892 MS.gene050104:intron 35.0%
AATGGCTGAGCTATTGTCTA+AGG + chr4.4:16361671-16361690 MS.gene050104:CDS 40.0%
ACACCTACTATTGTATGCAG+CGG + chr4.4:16362326-16362345 MS.gene050104:intron 40.0%
AGATAACTCTCCTGTTGATG+AGG + chr4.4:16360227-16360246 MS.gene050104:intron 40.0%
AGGAAATGCCTAAAAGGAAG+AGG + chr4.4:16360268-16360287 MS.gene050104:CDS 40.0%
AGGCATGAATTCTTTGCTCT+TGG - chr4.4:16362405-16362424 None:intergenic 40.0%
ATTGCTGCACATTCAAAGGA+AGG - chr4.4:16361415-16361434 None:intergenic 40.0%
ATTTCCCTAAGAGAAGTCAG+CGG - chr4.4:16360758-16360777 None:intergenic 40.0%
CCAAATGAAACAATATGGCC+AGG + chr4.4:16361900-16361919 MS.gene050104:CDS 40.0%
CCTAACTTATGACCCTGAAA+AGG + chr4.4:16362244-16362263 MS.gene050104:intron 40.0%
CCTGGCCATATTGTTTCATT+TGG - chr4.4:16361903-16361922 None:intergenic 40.0%
CGCAGAAGATTATACCTGAA+AGG - chr4.4:16362149-16362168 None:intergenic 40.0%
CTTTAATGCTACAACTTCCC+CGG - chr4.4:16360702-16360721 None:intergenic 40.0%
GAACCATTCATGATTCAGAG+CGG - chr4.4:16362365-16362384 None:intergenic 40.0%
GACAAAATTGACCTTGACTC+AGG - chr4.4:16361939-16361958 None:intergenic 40.0%
GCTATTGATATGTGGTCTCT+TGG + chr4.4:16361642-16361661 MS.gene050104:CDS 40.0%
GGCATGAATTCTTTGCTCTT+GGG - chr4.4:16362404-16362423 None:intergenic 40.0%
GTAACAGTACAAGTCACCAA+GGG - chr4.4:16362090-16362109 None:intergenic 40.0%
GTGGTCTCTTGGTTGTATAA+TGG + chr4.4:16361653-16361672 MS.gene050104:CDS 40.0%
TCTCCAGTTCTTTCTGATTC+TGG + chr4.4:16362201-16362220 MS.gene050104:intron 40.0%
TGACATCAACTATGTATGGG+TGG - chr4.4:16360801-16360820 None:intergenic 40.0%
TGTAACAGTACAAGTCACCA+AGG - chr4.4:16362091-16362110 None:intergenic 40.0%
TTCTTCCGAATCAGATGATC+TGG - chr4.4:16360385-16360404 None:intergenic 40.0%
! AGTTGATGTCAAGGAAGTAG+TGG + chr4.4:16360810-16360829 MS.gene050104:intron 40.0%
! CAAGCGAACTTTACCTTTTC+AGG - chr4.4:16362260-16362279 None:intergenic 40.0%
! CACCCCTGTTATTTAAAAGC+AGG - chr4.4:16361027-16361046 None:intergenic 40.0%
! CCCATACATAGTTGATGTCA+AGG + chr4.4:16360801-16360820 MS.gene050104:intron 40.0%
! GATAACTCTCCTGTTGATGA+GGG + chr4.4:16360228-16360247 MS.gene050104:intron 40.0%
! TTTTCCCAGCTTCCAACTTT+GGG + chr4.4:16362039-16362058 MS.gene050104:intron 40.0%
!! CCTTTTCAGGGTCATAAGTT+AGG - chr4.4:16362247-16362266 None:intergenic 40.0%
!! GTTAGTCTCCTCTTCCTTTT+AGG - chr4.4:16360279-16360298 None:intergenic 40.0%
!! TCAGGTAATTTTGAGAAGCC+TGG - chr4.4:16361921-16361940 None:intergenic 40.0%
!! TTGGTTTGGCTCGTCAATAT+GGG + chr4.4:16361065-16361084 MS.gene050104:CDS 40.0%
!! TTTGGTTTGGCTCGTCAATA+TGG + chr4.4:16361064-16361083 MS.gene050104:CDS 40.0%
AAGAACGGTCAACATGCTTC+AGG + chr4.4:16360589-16360608 MS.gene050104:CDS 45.0%
ACGACCGAAATGTTCCTTTC+AGG + chr4.4:16362132-16362151 MS.gene050104:intron 45.0%
ACTCTAGTCTCCAAAACCTC+AGG - chr4.4:16360303-16360322 None:intergenic 45.0%
ACTTCACACCTTCTAAACGC+TGG - chr4.4:16360957-16360976 None:intergenic 45.0%
AGAACGGTCAACATGCTTCA+GGG + chr4.4:16360590-16360609 MS.gene050104:CDS 45.0%
AGAATCTCACCCTCATCAAC+AGG - chr4.4:16360240-16360259 None:intergenic 45.0%
AGACCAAAACCACCCAAAGT+TGG - chr4.4:16362054-16362073 None:intergenic 45.0%
AGCATGTTGACCGTTCTTTG+AGG - chr4.4:16360587-16360606 None:intergenic 45.0%
ATGACAACTGGGTGCTTCAT+AGG + chr4.4:16360984-16361003 MS.gene050104:CDS 45.0%
ATTCTTTGCTCTTGGGAGAG+AGG - chr4.4:16362397-16362416 None:intergenic 45.0%
ATTTCCTGCTCAACATGCTC+AGG + chr4.4:16362427-16362446 MS.gene050104:CDS 45.0%
CAACTATGTATGGGTGGTGA+AGG - chr4.4:16360795-16360814 None:intergenic 45.0%
CTATTGTATGCAGCGGATCA+CGG + chr4.4:16362333-16362352 MS.gene050104:intron 45.0%
GAAACCATATACTCACCTGG+TGG + chr4.4:16361096-16361115 MS.gene050104:CDS 45.0%
GATCCGCTGCATACAATAGT+AGG - chr4.4:16362332-16362351 None:intergenic 45.0%
GATGTCAAGGAAGTAGTGGT+TGG + chr4.4:16360814-16360833 MS.gene050104:intron 45.0%
GCATGTTGAGCAGGAAATGT+AGG - chr4.4:16362425-16362444 None:intergenic 45.0%
GGAACATAATCCTCACCTTC+TGG - chr4.4:16360172-16360191 None:intergenic 45.0%
GGGTGAGATTCTCAATGATG+AGG + chr4.4:16360248-16360267 MS.gene050104:intron 45.0%
GTAACCACCAGGTGAGTATA+TGG - chr4.4:16361103-16361122 None:intergenic 45.0%
TAGGGCCAAAGATAAGAGAC+CGG + chr4.4:16360680-16360699 MS.gene050104:intron 45.0%
TCCAGCTCAACCTCAAAGAA+CGG + chr4.4:16360574-16360593 MS.gene050104:CDS 45.0%
TCGAGCCAGATCATCTGATT+CGG + chr4.4:16360377-16360396 MS.gene050104:CDS 45.0%
TGACAACTGGGTGCTTCATA+GGG + chr4.4:16360985-16361004 MS.gene050104:CDS 45.0%
TGGAGATCCAGTGAATGATG+TGG - chr4.4:16362187-16362206 None:intergenic 45.0%
TGGTGGTTACTCTTTGGTAC+AGG + chr4.4:16361113-16361132 MS.gene050104:CDS 45.0%
TGTACCAAAGAGTAACCACC+AGG - chr4.4:16361114-16361133 None:intergenic 45.0%
TTTCCCTAAGAGAAGTCAGC+GGG - chr4.4:16360757-16360776 None:intergenic 45.0%
TTTCCTGCCACATCATTCAC+TGG + chr4.4:16362177-16362196 MS.gene050104:CDS 45.0%
! AAGCCGCTCTGAATCATGAA+TGG + chr4.4:16362359-16362378 MS.gene050104:intron 45.0%
! CTTCCAACTTTGGGTGGTTT+TGG + chr4.4:16362048-16362067 MS.gene050104:intron 45.0%
! GAGACTAACTCCTGAGGTTT+TGG + chr4.4:16360290-16360309 MS.gene050104:CDS 45.0%
! GTTTTCCCAGCTTCCAACTT+TGG + chr4.4:16362038-16362057 MS.gene050104:intron 45.0%
! TCTGTATCTGAGGTGACTAC+TGG - chr4.4:16360515-16360534 None:intergenic 45.0%
!!! AGGTTTTGGAGACTAGAGTG+AGG + chr4.4:16360304-16360323 MS.gene050104:CDS 45.0%
AACCACCCAAAGTTGGAAGC+TGG - chr4.4:16362047-16362066 None:intergenic 50.0%
AACCATGGGAGAACGTCTAG+TGG + chr4.4:16360414-16360433 MS.gene050104:CDS 50.0%
ACAGTACAAGTCACCAAGGG+AGG - chr4.4:16362087-16362106 None:intergenic 50.0%
ACCACCCAAAGTTGGAAGCT+GGG - chr4.4:16362046-16362065 None:intergenic 50.0%
AGGGCCAAAGATAAGAGACC+GGG + chr4.4:16360681-16360700 MS.gene050104:intron 50.0%
ATCTTCTCAAGATGGGCAGC+TGG + chr4.4:16360204-16360223 MS.gene050104:intron 50.0%
CTCACCTGGTGGTTACTCTT+TGG + chr4.4:16361107-16361126 MS.gene050104:CDS 50.0%
CTTCCCCGGTCTCTTATCTT+TGG - chr4.4:16360688-16360707 None:intergenic 50.0%
CTTGGGAGAGAGGAACTTCA+CGG - chr4.4:16362387-16362406 None:intergenic 50.0%
GAAGAGGAGACTAACTCCTG+AGG + chr4.4:16360284-16360303 MS.gene050104:CDS 50.0%
GATCCAGTGAATGATGTGGC+AGG - chr4.4:16362183-16362202 None:intergenic 50.0%
GTTGGAAGCTGGGAAAACAG+TGG - chr4.4:16362036-16362055 None:intergenic 50.0%
TTTGCCCCCAGAAGAAGTTC+AGG - chr4.4:16361609-16361628 None:intergenic 50.0%
! AGGGCACCTGAACTTCTTCT+GGG + chr4.4:16361600-16361619 MS.gene050104:intron 50.0%
!! ACCGTTCTTTGAGGTTGAGC+TGG - chr4.4:16360578-16360597 None:intergenic 50.0%
!! CTTCCCGCTGACTTCTCTTA+GGG + chr4.4:16360751-16360770 MS.gene050104:CDS 50.0%
!! GTTCTTTGAGGTTGAGCTGG+AGG - chr4.4:16360575-16360594 None:intergenic 50.0%
!!! GTGGTTTTGGTCTGACTAGC+TGG + chr4.4:16362061-16362080 MS.gene050104:intron 50.0%
CTGTCCTGAGCATGTTGAGC+AGG - chr4.4:16362434-16362453 None:intergenic 55.0%
GGCACCTGAACTTCTTCTGG+GGG + chr4.4:16361602-16361621 MS.gene050104:CDS 55.0%
GGGCACCTGAACTTCTTCTG+GGG + chr4.4:16361601-16361620 MS.gene050104:intron 55.0%
GGGCCAAAGATAAGAGACCG+GGG + chr4.4:16360682-16360701 MS.gene050104:intron 55.0%
TCCCAGCTTCCAACTTTGGG+TGG + chr4.4:16362042-16362061 MS.gene050104:intron 55.0%
TCTAGTGGCGATGGACATCC+TGG + chr4.4:16360429-16360448 MS.gene050104:CDS 55.0%
TGAGGTTGAGCTGGAGGTTC+AGG - chr4.4:16360569-16360588 None:intergenic 55.0%
! CAGGGCACCTGAACTTCTTC+TGG + chr4.4:16361599-16361618 MS.gene050104:intron 55.0%
!! GCTTCCCGCTGACTTCTCTT+AGG + chr4.4:16360750-16360769 MS.gene050104:CDS 55.0%
AGCTGAGCAGCCAGAAGGTG+AGG + chr4.4:16360159-16360178 MS.gene050104:intron 60.0%
CAGGAAGCTGAGCAGCCAGA+AGG + chr4.4:16360154-16360173 MS.gene050104:CDS 60.0%
CGCCACTAGACGTTCTCCCA+TGG - chr4.4:16360419-16360438 None:intergenic 60.0%
GGGAGAACGTCTAGTGGCGA+TGG + chr4.4:16360420-16360439 MS.gene050104:CDS 60.0%
! TCTGACTAGCTGGCCTCCCT+TGG + chr4.4:16362071-16362090 MS.gene050104:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 16360140 16362453 16360140 ID=MS.gene050104
chr4.4 mRNA 16360140 16362453 16360140 ID=MS.gene050104.t1;Parent=MS.gene050104
chr4.4 exon 16360140 16360175 16360140 ID=MS.gene050104.t1.exon1;Parent=MS.gene050104.t1
chr4.4 CDS 16360140 16360175 16360140 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16360249 16360495 16360249 ID=MS.gene050104.t1.exon2;Parent=MS.gene050104.t1
chr4.4 CDS 16360249 16360495 16360249 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16360528 16360622 16360528 ID=MS.gene050104.t1.exon3;Parent=MS.gene050104.t1
chr4.4 CDS 16360528 16360622 16360528 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16360698 16360810 16360698 ID=MS.gene050104.t1.exon4;Parent=MS.gene050104.t1
chr4.4 CDS 16360698 16360810 16360698 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16360976 16361134 16360976 ID=MS.gene050104.t1.exon5;Parent=MS.gene050104.t1
chr4.4 CDS 16360976 16361134 16360976 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16361602 16361748 16361602 ID=MS.gene050104.t1.exon6;Parent=MS.gene050104.t1
chr4.4 CDS 16361602 16361748 16361602 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16361887 16361966 16361887 ID=MS.gene050104.t1.exon7;Parent=MS.gene050104.t1
chr4.4 CDS 16361887 16361966 16361887 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16362154 16362206 16362154 ID=MS.gene050104.t1.exon8;Parent=MS.gene050104.t1
chr4.4 CDS 16362154 16362206 16362154 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
chr4.4 exon 16362392 16362453 16362392 ID=MS.gene050104.t1.exon9;Parent=MS.gene050104.t1
chr4.4 CDS 16362392 16362453 16362392 ID=cds.MS.gene050104.t1;Parent=MS.gene050104.t1
Gene Sequence

>MS.gene050104

ATGGGGGTAATGATCAGGAAGCTGAGCAGCCAGAAGGTGAGGATTATGTTCCAACTCGAAATATATCTTCTCAAGATGGGCAGCTGGAGATAACTCTCCTGTTGATGAGGGTGAGATTCTCAATGATGAGGAAATGCCTAAAAGGAAGAGGAGACTAACTCCTGAGGTTTTGGAGACTAGAGTGAGGAACAAGCTATTGAGCCCCAATGATTCTAAAATAGGTGGTTTTGAAGGTGCTCGAGCCAGATCATCTGATTCGGAAGAAAGAAGTGTTAACCATGGGAGAACGTCTAGTGGCGATGGACATCCTGGTATTGAATCAGAAAAGGATGACTATATGGACATTGATGTTCGAGGTACAAAAAAGTGACACCAGTAGTCACCTCAGATACAGAATCTGAAGATGACATTGATAGGCAAGAGACTCCTGAACCTCCAGCTCAACCTCAAAGAACGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATAACGGTGTTGTATATAGGGCCAAAGATAAGAGACCGGGGAAGTTGTAGCATTAAAGAAGGTCAAAATGGAGAAGGAAAAAGAAGGCTTCCCGCTGACTTCTCTTAGGGAAATAAACATTCTTCTCTCCTTCACCACCCATACATAGTTGATGTCAAGGAAGTAGTGGTTGGAAGTAGCCTTGACAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTTAAAGGATTAATGGAGTCAATTGAAGCAACCATTTAGCCAAAGTGAAGTGAAAATGCTTAATGATCCAGCGTTTAGAAGGTGTGAAGTATCTTCAATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAACCCTGCTTTTAAATAACAGGGGTGAGCTAAAAATTTGTGATTTTGGTTTGGCTCGTCAATATGGGAGTCCTTTGAAACCATATACTCACCTGGTGGTTACTCTTTGGTACAGGTGAGCTTTATTTAATTATTGCAATCTGTGTCTGTATATCTATGTATATATCTATTACATATATTGGACTAATTGATATTGCATTTGCATCATTCAGAGTGTAGTTTGATTGTTTACGTGTGAATTTGATAATTGCAGTCATGCCTGTTGCATTGAATAAAACTTAATTTTCATTTGTAATTATTCTGTAATAATAATAATTAGTAACCAAATATTAATCTTGCAAACTGGCTCCTACTAGTTACCCTTTCCTTTAGGTCAATGTTTACATACTTATCCTTCCTTTGAATGTGCAGCAATGTTTTCAACGAGCATACTTATCTGCTTCTCTTTAGTTTTTCATTGCCCTGTGTTGCTAATTTAATTAATTTTACTCGCCTTCACGTATGTGTTTAACACATTTTTTTCTGCATTCTGTTGCAGAAATAAGAGATCATTTACCTGATGGTTGTCTATATGTTTATCAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCGTTGTTCAATGAAAAACGGAATTCGATCAACTTGACAAGTATATACCAACTGTGTTTGTCAATTATTTGGTAGAACATATGCTCTCATTTTCTCTTTCTTTTAAGTTTTGTCGTCTTGTGTCTAATCACTTCTCTATTACAGTTATTGCTGCTACATTGACGTCTGTTATTTTGTTTGCAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATATGGCCAGGCTTCTCAAAATTACCTGAGTCAAGGTCAATTTTGTCAAGCACCAGTAAGTACTCATGATTTCCTTTATTGAAGACATTGACTGTTTAATTACACTGTTCTTATTTTTCTGCCACTGTTTTCCCAGCTTCCAACTTTGGGTGGTTTTGGTCTGACTAGCTGGCCTCCCTTGGTGACTTGTACTGTTACACAACTCTTGTAATTTCTATTAACGACCGAAATGTTCCTTTCAGGTATAATCTTCTGCGTAAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTGATTTGTTGAACAAGCTCCTAACTTATGACCCTGAAAAGGTAAAGTTCGCTTGTTCTTCAAGAATTAATTTGCCACAATTCACTCTAGTATTAAGAATAACACCTACTATTGTATGCAGCGGATCACGGCTGAAGCCGCTCTGAATCATGAATGGTTCCGTGAAGTTCCTCTCTCCCAAGAGCAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAG
Protein sequence

>MS.gene050104.t1

MGVMIRKLSSQKGEILNDEEMPKRKRRLTPEVLETRVRNKLLSPNDSKIGGFEGARARSSDSEERSVNHGRTSSGDGHPGIESEKDDYMDIDVRDTESEDDIDRQETPEPPAQPQRTVNMLQGCRSTGEVVALKKVKMEKEKEGFPLTSLREINILLSFTTHTYIFNDNWVLHRDLKTSTLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNEKRNSINLTSIYQLILGTPNETIWPGFSKLPESRSILSSTSIIFCVKKFPATSFTGSPFLSPKSKEFMPTFPAQHAQD