AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050181

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050181.t1 MTR_7g445710 85.331 559 60 4 1 553 1 543 0.0 931
MS.gene050181.t1 MTR_7g445530 84.499 529 60 4 1 523 1 513 0.0 869
MS.gene050181.t1 MTR_7g450730 76.523 558 73 7 1 553 1 505 0.0 816
MS.gene050181.t1 MTR_7g445810 82.796 279 42 3 1 278 1 274 3.75e-153 439
MS.gene050181.t1 MTR_5g013420 44.096 542 206 13 87 553 570 1089 6.05e-133 414
MS.gene050181.t1 MTR_5g013420 43.911 542 207 13 87 553 570 1089 1.47e-131 410
MS.gene050181.t1 MTR_4g010830 42.007 538 222 11 87 553 462 980 9.38e-124 387
MS.gene050181.t1 MTR_7g445600 75.934 241 42 1 7 247 3 227 9.15e-118 352
MS.gene050181.t1 MTR_7g445600 62.130 169 13 1 355 523 239 356 5.38e-59 200
MS.gene050181.t1 MTR_4g010550 41.286 482 188 12 126 553 24 464 4.91e-107 328
MS.gene050181.t1 MTR_1g048950 32.343 572 243 17 78 553 10 533 4.01e-72 241
MS.gene050181.t1 MTR_7g084090 32.996 494 233 14 144 553 278 757 2.59e-64 224
MS.gene050181.t1 MTR_3g011440 30.882 544 266 16 94 548 137 659 2.74e-64 222
MS.gene050181.t1 MTR_8g042750 31.512 549 263 21 89 548 159 683 1.16e-62 218
MS.gene050181.t1 MTR_8g070075 32.415 472 228 15 126 522 293 748 7.82e-62 217
MS.gene050181.t1 MTR_6g061270 32.290 511 248 15 126 553 199 694 6.87e-61 213
MS.gene050181.t1 MTR_8g070070 31.590 478 224 16 126 522 300 755 2.77e-60 213
MS.gene050181.t1 MTR_7g088370 31.204 548 264 19 81 548 186 700 4.68e-58 206
MS.gene050181.t1 MTR_8g071030 32.704 477 220 17 126 522 280 735 9.92e-58 206
MS.gene050181.t1 MTR_1g035420 28.450 587 312 21 31 529 85 651 1.76e-54 195
MS.gene050181.t1 MTR_6g061200 30.724 511 227 14 126 553 199 665 1.14e-53 193
MS.gene050181.t1 MTR_6g044690 29.185 466 240 15 129 522 115 562 4.53e-52 187
MS.gene050181.t1 MTR_0376s0030 28.972 535 255 23 76 522 63 560 5.92e-48 176
MS.gene050181.t1 MTR_6g043960 29.148 446 245 17 129 522 54 480 1.78e-44 164
MS.gene050181.t1 MTR_1g035400 28.750 480 250 14 126 530 109 571 5.85e-41 156
MS.gene050181.t1 MTR_7g052480 32.997 297 152 9 294 553 270 556 5.67e-40 153
MS.gene050181.t1 MTR_2g054460 26.897 435 241 15 129 522 64 462 4.62e-36 140
MS.gene050181.t1 MTR_8g078490 36.735 196 92 4 358 553 1090 1253 1.39e-31 130
MS.gene050181.t1 MTR_7g084090 29.972 357 163 11 144 418 278 629 5.34e-30 125
MS.gene050181.t1 MTR_5g018850 35.859 198 91 5 358 553 1344 1507 2.73e-29 124
MS.gene050181.t1 MTR_4g132610 35.714 196 94 4 358 553 884 1047 1.05e-28 122
MS.gene050181.t1 MTR_8g078505 34.928 209 98 7 343 548 360 533 1.46e-25 110
MS.gene050181.t1 MTR_1g080340 29.577 213 109 7 345 551 407 584 2.01e-18 89.4
MS.gene050181.t1 MTR_1g069570 30.000 210 105 8 345 548 568 741 2.95e-17 85.9
MS.gene050181.t1 MTR_7g098390 28.934 197 101 7 358 548 534 697 2.91e-12 69.7
MS.gene050181.t1 MTR_6g027690 24.771 218 126 9 336 552 239 419 4.73e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050181.t1 AT2G35160 42.134 553 195 17 80 553 252 758 7.80e-119 369
MS.gene050181.t1 AT2G35160 42.134 553 195 17 80 553 288 794 1.77e-118 369
MS.gene050181.t1 AT2G35160 42.134 553 195 17 80 553 288 794 1.77e-118 369
MS.gene050181.t1 AT2G35160 42.134 553 195 17 80 553 288 794 1.77e-118 369
MS.gene050181.t1 AT2G35160 42.134 553 195 17 80 553 288 794 1.77e-118 369
MS.gene050181.t1 AT2G22740 41.418 536 219 16 98 553 270 790 1.38e-112 353
MS.gene050181.t1 AT2G22740 41.418 536 219 16 98 553 270 790 1.38e-112 353
MS.gene050181.t1 AT5G13960 33.533 501 238 15 135 553 3 490 6.76e-64 217
MS.gene050181.t1 AT5G13960 33.333 501 239 15 135 553 137 624 1.11e-63 219
MS.gene050181.t1 AT1G73100 29.889 542 278 17 85 548 147 664 1.30e-59 209
MS.gene050181.t1 AT5G04940 31.535 482 231 16 143 548 207 665 1.02e-57 204
MS.gene050181.t1 AT5G04940 31.535 482 231 16 143 548 207 665 1.02e-57 204
MS.gene050181.t1 AT2G33290 29.424 486 244 15 126 536 186 647 1.40e-49 181
MS.gene050181.t1 AT2G33290 29.424 486 244 15 126 536 186 647 1.40e-49 181
MS.gene050181.t1 AT2G33290 29.424 486 244 15 126 536 186 647 1.40e-49 181
MS.gene050181.t1 AT2G33290 29.424 486 244 15 126 536 186 647 1.40e-49 181
MS.gene050181.t1 AT4G13460 28.996 538 276 16 60 522 130 636 1.09e-48 179
MS.gene050181.t1 AT4G13460 28.996 538 276 16 60 522 130 636 1.09e-48 179
MS.gene050181.t1 AT2G24740 29.747 474 230 16 146 548 309 750 7.34e-44 166
MS.gene050181.t1 AT1G17770 27.699 491 245 17 143 548 223 688 6.37e-42 160
MS.gene050181.t1 AT5G47150 39.450 218 102 8 94 288 114 324 8.33e-28 114
MS.gene050181.t1 AT5G47160 34.091 264 132 10 50 284 157 407 6.58e-25 107
MS.gene050181.t1 AT5G47160 34.091 264 132 10 50 284 157 407 6.58e-25 107
MS.gene050181.t1 AT5G47160 34.091 264 132 10 50 284 157 407 6.58e-25 107
MS.gene050181.t1 AT2G23740 31.937 191 101 4 358 548 1209 1370 2.51e-23 105
MS.gene050181.t1 AT2G23740 31.937 191 101 4 358 548 1216 1377 2.61e-23 105
MS.gene050181.t1 AT2G23740 31.937 191 101 4 358 548 1216 1377 2.61e-23 105
MS.gene050181.t1 AT2G23740 31.937 191 101 4 358 548 1216 1377 2.61e-23 105
MS.gene050181.t1 AT3G04380 32.057 209 108 8 345 551 241 417 4.53e-18 87.4
MS.gene050181.t1 AT3G04380 32.057 209 108 8 345 551 257 433 4.78e-18 87.4
MS.gene050181.t1 AT3G04380 32.057 209 108 8 345 551 257 433 4.86e-18 87.4
MS.gene050181.t1 AT3G04380 32.057 209 108 8 345 551 284 460 5.25e-18 87.4
MS.gene050181.t1 AT3G04380 32.057 209 108 8 345 551 268 444 5.41e-18 87.4
MS.gene050181.t1 AT3G04380 32.057 209 108 8 345 551 284 460 5.46e-18 87.4
MS.gene050181.t1 AT3G03750 28.205 195 112 5 358 552 183 349 1.58e-14 75.5
MS.gene050181.t1 AT1G04050 27.184 206 113 7 345 548 548 718 6.43e-14 75.1
MS.gene050181.t1 AT1G04050 27.184 206 113 7 345 548 548 718 6.43e-14 75.1
MS.gene050181.t1 AT1G04050 29.126 206 109 9 345 548 444 614 6.89e-14 75.1
MS.gene050181.t1 AT2G23740 32.258 124 59 3 358 481 1216 1314 1.27e-12 71.6
MS.gene050181.t1 AT2G23740 32.258 124 59 3 358 481 1216 1314 1.27e-12 71.6
MS.gene050181.t1 AT2G05900 27.500 200 104 7 164 326 1 196 5.33e-12 67.4

Find 98 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAAAGTCGAATCTATT+TGG 0.122230 7.1:-54124216 MS.gene050181:CDS
TTTACCAGTTGAAGCTTCTA+AGG 0.214214 7.1:+54123667 None:intergenic
GATGAGTATTTATTTAATAT+TGG 0.247972 7.1:-54123770 MS.gene050181:CDS
AACATTTCGAGCAAACAAAT+TGG 0.261209 7.1:+54123550 None:intergenic
CTTGAAATGGTTTGTGTTGT+TGG 0.272283 7.1:+54124968 None:intergenic
AACTTTATAATAACTCTAAT+AGG 0.276626 7.1:+54124298 None:intergenic
GGAGGTAATGTCATTAATTC+TGG 0.290555 7.1:-54124373 MS.gene050181:CDS
ACCATTGATGCTGCTAAGTA+TGG 0.290913 7.1:-54123608 MS.gene050181:CDS
CGAGTAATGTATTGAAAATA+TGG 0.296319 7.1:+54124058 None:intergenic
TTATAAAGTCGAATCTATTT+GGG 0.319297 7.1:-54124215 MS.gene050181:CDS
TCAGAGAATGCAATTCCTTC+TGG 0.338329 7.1:-54123860 MS.gene050181:CDS
AATTCTGGAGAATGTGATAA+AGG 0.344872 7.1:-54124358 MS.gene050181:CDS
GAATCTTCGAAAAGCCATTC+AGG 0.347836 7.1:+54124025 None:intergenic
ACAAAAGTGTTCGTTTATAC+AGG 0.350376 7.1:-54124400 MS.gene050181:CDS
TCTCATTGATTACGTGATAA+AGG 0.363505 7.1:-54124479 MS.gene050181:CDS
CTCGTAACATTTATCCTGAA+TGG 0.372209 7.1:-54124039 MS.gene050181:CDS
AAGAAAGTTAAAACAACATT+AGG 0.375506 7.1:-54124709 MS.gene050181:CDS
TTTCTTGATTGGTGTTTCCT+TGG 0.377579 7.1:+54124855 None:intergenic
TTCCTGTTGCAGACTTGAAA+TGG 0.382246 7.1:+54124955 None:intergenic
AGGTGAGATTATTGAAGATC+AGG 0.383100 7.1:-54123816 MS.gene050181:CDS
TTGTCACCTACTTCTATTCC+AGG 0.383631 7.1:+54124556 None:intergenic
AGAACCCGTGACACTTTGAT+AGG 0.402578 7.1:+54124631 None:intergenic
TTCATCTATGGTTGATAGTA+AGG 0.413030 7.1:-54123708 MS.gene050181:CDS
GTGGTTAATCGTATAGATTC+TGG 0.413281 7.1:-54124088 MS.gene050181:CDS
TTTAAACGCAGTTTCTTGAT+TGG 0.417146 7.1:+54124844 None:intergenic
GGTGAGGTGTATTGTTACTA+TGG 0.435582 7.1:-54124241 MS.gene050181:CDS
AACCATTTCAAGTCTGCAAC+AGG 0.438779 7.1:-54124957 MS.gene050181:CDS
ACATTTCGAGCAAACAAATT+GGG 0.449844 7.1:+54123551 None:intergenic
ATACGATTAACCACACATAT+AGG 0.451047 7.1:+54124097 None:intergenic
ATTCTGGAGAATGTGATAAA+GGG 0.456300 7.1:-54124357 MS.gene050181:CDS
CCCTCCACTCTTAAGAGCAC+AGG 0.461039 7.1:+54123964 None:intergenic
GGTGGTGGTGCACGTGGTGG+AGG 0.461405 7.1:-54124262 MS.gene050181:CDS
GTGGGAGGAGGATTCATCTA+TGG 0.463351 7.1:-54123720 MS.gene050181:CDS
TGGCAAGAACTCAACGTTGT+TGG 0.468798 7.1:-54124523 MS.gene050181:CDS
GATCAAGTGATTGATTCAAA+TGG 0.480841 7.1:-54123425 MS.gene050181:CDS
TTTGTGTTGTTGGTTGGTAG+TGG 0.484782 7.1:+54124978 None:intergenic
ACCATACTTAGCAGCATCAA+TGG 0.496537 7.1:+54123607 None:intergenic
AAAATTATTGGAAATGTCCC+TGG 0.496911 7.1:-54124574 MS.gene050181:CDS
CAACCCTTAGAAGCTTCAAC+TGG 0.499229 7.1:-54123671 MS.gene050181:CDS
TTTCTTTCTTCTTGAGTCAT+CGG 0.503960 7.1:+54124726 None:intergenic
AAATGGTTTGTGTTGTTGGT+TGG 0.505226 7.1:+54124972 None:intergenic
CAAGACTAAGGCGAAAGGAT+GGG 0.513493 7.1:-54123891 MS.gene050181:CDS
AAACTCGGTAACGAATTTAC+CGG 0.517987 7.1:-54124664 MS.gene050181:CDS
CGTGCTCTCTGTGGAAAACT+CGG 0.520054 7.1:-54124679 MS.gene050181:CDS
ATAAAGTTTAATTCAAAGAA+CGG 0.520311 7.1:-54124283 MS.gene050181:CDS
AAGACGAAAGCATGTTATTG+TGG 0.528019 7.1:-54123395 MS.gene050181:CDS
TAGGTGACAAGTTTCAGTAT+TGG 0.528561 7.1:-54124543 MS.gene050181:CDS
TCAAGACTAAGGCGAAAGGA+TGG 0.530216 7.1:-54123892 MS.gene050181:CDS
AGAAGCTTCAACTGGTAAAG+AGG 0.530368 7.1:-54123663 MS.gene050181:CDS
GCCTGTGCTCTTAAGAGTGG+AGG 0.530694 7.1:-54123965 MS.gene050181:CDS
CAAAAGTGTTCGTTTATACA+GGG 0.533398 7.1:-54124399 MS.gene050181:CDS
TTACCAGTTGAAGCTTCTAA+GGG 0.535885 7.1:+54123668 None:intergenic
GGTCAATAGTTCGTGGGAGG+AGG 0.540429 7.1:-54123732 MS.gene050181:CDS
AAGACTAAGGCGAAAGGATG+GGG 0.542189 7.1:-54123890 MS.gene050181:CDS
TTTGATAGGAAGCGCGTCGC+CGG 0.553874 7.1:+54124645 None:intergenic
TTTGTTATAGATATTTCCAA+TGG 0.556582 7.1:-54124133 MS.gene050181:CDS
CTAAGTATGGTAACGTGGCA+AGG 0.558339 7.1:-54123595 MS.gene050181:CDS
ATTGATGATCGATGTGATAG+TGG 0.558469 7.1:-54123638 MS.gene050181:CDS
CGCTTCCTATCAAAGTGTCA+CGG 0.559927 7.1:-54124636 MS.gene050181:CDS
ACTATCACATCGATCATCAA+TGG 0.565161 7.1:+54123640 None:intergenic
TCAAAGAAACACTGAAACCA+AGG 0.567849 7.1:-54124872 MS.gene050181:CDS
TTTAATTCAAAGAACGGTGG+TGG 0.569178 7.1:-54124277 MS.gene050181:CDS
TTTGCCTGTGCTCTTAAGAG+TGG 0.575325 7.1:-54123968 MS.gene050181:CDS
TGGTGCACGTGGTGGAGGTG+AGG 0.581579 7.1:-54124257 MS.gene050181:CDS
CCTGTGCTCTTAAGAGTGGA+GGG 0.588175 7.1:-54123964 MS.gene050181:CDS
AATGTCCCTGGAATAGAAGT+AGG 0.590260 7.1:-54124562 MS.gene050181:CDS
AACGGTGGTGGTGCACGTGG+TGG 0.592302 7.1:-54124265 MS.gene050181:CDS
AAAGTCAGCTCATTCATGCT+CGG 0.596521 7.1:+54123467 None:intergenic
TTCACAAGGTCAATAGTTCG+TGG 0.597547 7.1:-54123739 MS.gene050181:CDS
GCTTCCTATCAAAGTGTCAC+GGG 0.597827 7.1:-54124635 MS.gene050181:CDS
GTGTTCGTTTATACAGGGGA+AGG 0.599990 7.1:-54124394 MS.gene050181:CDS
AAACGATCTTAGAGAATCAG+AGG 0.603303 7.1:-54124789 MS.gene050181:CDS
TTTACGATGATGATGATCTG+AGG 0.605700 7.1:-54123526 MS.gene050181:CDS
GAGGCAAGTTCATTCACGAT+GGG 0.608632 7.1:-54124600 MS.gene050181:CDS
AATCTCATCAATACAGTCGA+CGG 0.610597 7.1:+54123357 None:intergenic
TTCGTTTATACAGGGGAAGG+AGG 0.611584 7.1:-54124391 MS.gene050181:CDS
ATGATCGATGTGATAGTGGT+AGG 0.614728 7.1:-54123634 MS.gene050181:CDS
TATTGGCAATTATATTCACA+AGG 0.615507 7.1:-54123753 MS.gene050181:CDS
TCACAAGGTCAATAGTTCGT+GGG 0.615584 7.1:-54123738 MS.gene050181:CDS
TTGGTTGGTAGTGGAAGACG+AGG 0.623624 7.1:+54124987 None:intergenic
GGTAACTTCCGTGCTCTCTG+TGG 0.631604 7.1:-54124688 MS.gene050181:CDS
TAATCGTATAGATTCTGGCA+AGG 0.632162 7.1:-54124083 MS.gene050181:CDS
AGAGGCAAGTTCATTCACGA+TGG 0.640375 7.1:-54124601 MS.gene050181:CDS
TGTCACCTACTTCTATTCCA+GGG 0.640833 7.1:+54124557 None:intergenic
TCACAAATAAAACTTCCAGA+AGG 0.644047 7.1:+54123845 None:intergenic
GAGTCATCGGAAGTCAAAGA+CGG 0.650400 7.1:+54124739 None:intergenic
CACAACGAGAGTATTGTCAA+AGG 0.653972 7.1:-54124896 MS.gene050181:CDS
AGAACATTTACGCCCAACAG+AGG 0.655904 7.1:+54124003 None:intergenic
CAAGGTCAATAGTTCGTGGG+AGG 0.659849 7.1:-54123735 MS.gene050181:CDS
AAAAGTGTTCGTTTATACAG+GGG 0.661822 7.1:-54124398 MS.gene050181:CDS
AGAAGCTGTTCCTATATGTG+TGG 0.665038 7.1:-54124107 MS.gene050181:CDS
AAGAACGGTGGTGGTGCACG+TGG 0.677631 7.1:-54124268 MS.gene050181:CDS
TCACGGGTTCTAAAACAAAG+AGG 0.679698 7.1:-54124619 MS.gene050181:CDS
AAGTTTAATTCAAAGAACGG+TGG 0.694907 7.1:-54124280 MS.gene050181:CDS
TGGTTGGTAGTGGAAGACGA+GGG 0.707958 7.1:+54124988 None:intergenic
ACAAATTGGGAGAACAACTG+TGG 0.712839 7.1:+54123564 None:intergenic
GCTGCATATAGCATGATGTG+TGG 0.717627 7.1:+54123500 None:intergenic
TGCTGCTAAGTATGGTAACG+TGG 0.728265 7.1:-54123600 MS.gene050181:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGATTTTAAATTTTGTT+TGG - chr7.1:54124188-54124207 MS.gene050181:CDS 10.0%
!! AACTTTATAATAACTCTAAT+AGG + chr7.1:54124072-54124091 None:intergenic 15.0%
!! ATAAAGTTTAATTCAAAGAA+CGG - chr7.1:54124084-54124103 MS.gene050181:CDS 15.0%
!! GATGAGTATTTATTTAATAT+TGG - chr7.1:54124597-54124616 MS.gene050181:CDS 15.0%
!! AAGAAAGTTAAAACAACATT+AGG - chr7.1:54123658-54123677 MS.gene050181:CDS 20.0%
!! AATCTATTTGGGAAAAAAAA+GGG - chr7.1:54124163-54124182 MS.gene050181:CDS 20.0%
!! ATAACAAAAAATTTCTGATC+AGG + chr7.1:54124222-54124241 None:intergenic 20.0%
!! TTATAAAGTCGAATCTATTT+GGG - chr7.1:54124152-54124171 MS.gene050181:CDS 20.0%
!! TTTATAAAGTCGAATCTATT+TGG - chr7.1:54124151-54124170 MS.gene050181:CDS 20.0%
!!! AGTTTTATTTGTGAGTATTT+AGG - chr7.1:54124531-54124550 MS.gene050181:CDS 20.0%
!!! TTTGTTATAGATATTTCCAA+TGG - chr7.1:54124234-54124253 MS.gene050181:CDS 20.0%
! CGAGTAATGTATTGAAAATA+TGG + chr7.1:54124312-54124331 None:intergenic 25.0%
! GAATCTATTTGGGAAAAAAA+AGG - chr7.1:54124162-54124181 MS.gene050181:CDS 25.0%
! TATTGGCAATTATATTCACA+AGG - chr7.1:54124614-54124633 MS.gene050181:CDS 25.0%
!!! ATCTCATTTTTCTTTACTCT+AGG + chr7.1:54124435-54124454 None:intergenic 25.0%
!!! TTCTTGTCATTTTGATGATA+TGG - chr7.1:54123939-54123958 MS.gene050181:CDS 25.0%
AAAATTATTGGAAATGTCCC+TGG - chr7.1:54123793-54123812 MS.gene050181:CDS 30.0%
AACATTTCGAGCAAACAAAT+TGG + chr7.1:54124820-54124839 None:intergenic 30.0%
AAGTTTAATTCAAAGAACGG+TGG - chr7.1:54124087-54124106 MS.gene050181:CDS 30.0%
ACATTTCGAGCAAACAAATT+GGG + chr7.1:54124819-54124838 None:intergenic 30.0%
ATACGATTAACCACACATAT+AGG + chr7.1:54124273-54124292 None:intergenic 30.0%
CACGATGGGAAAAAAATTAT+TGG - chr7.1:54123781-54123800 MS.gene050181:CDS 30.0%
TCACAAATAAAACTTCCAGA+AGG + chr7.1:54124525-54124544 None:intergenic 30.0%
TTTAAACGCAGTTTCTTGAT+TGG + chr7.1:54123526-54123545 None:intergenic 30.0%
TTTCTTTCTTCTTGAGTCAT+CGG + chr7.1:54123644-54123663 None:intergenic 30.0%
! AATTCTGGAGAATGTGATAA+AGG - chr7.1:54124009-54124028 MS.gene050181:CDS 30.0%
! ATTCTGGAGAATGTGATAAA+GGG - chr7.1:54124010-54124029 MS.gene050181:CDS 30.0%
! GATCAAGTGATTGATTCAAA+TGG - chr7.1:54124942-54124961 MS.gene050181:CDS 30.0%
! TCTCATTGATTACGTGATAA+AGG - chr7.1:54123888-54123907 MS.gene050181:CDS 30.0%
!! AAAAGTGTTCGTTTATACAG+GGG - chr7.1:54123969-54123988 MS.gene050181:CDS 30.0%
!! ACAAAAGTGTTCGTTTATAC+AGG - chr7.1:54123967-54123986 MS.gene050181:CDS 30.0%
!! CAAAAGTGTTCGTTTATACA+GGG - chr7.1:54123968-54123987 MS.gene050181:CDS 30.0%
!! GCTTCAAATTTTCAAGACTA+AGG - chr7.1:54124464-54124483 MS.gene050181:CDS 30.0%
!! TTCATCTATGGTTGATAGTA+AGG - chr7.1:54124659-54124678 MS.gene050181:CDS 30.0%
AAACGATCTTAGAGAATCAG+AGG - chr7.1:54123578-54123597 MS.gene050181:CDS 35.0%
AAACTCGGTAACGAATTTAC+CGG - chr7.1:54123703-54123722 MS.gene050181:CDS 35.0%
ACTATCACATCGATCATCAA+TGG + chr7.1:54124730-54124749 None:intergenic 35.0%
AGGTGAGATTATTGAAGATC+AGG - chr7.1:54124551-54124570 MS.gene050181:CDS 35.0%
CTCGTAACATTTATCCTGAA+TGG - chr7.1:54124328-54124347 MS.gene050181:CDS 35.0%
GGAGGTAATGTCATTAATTC+TGG - chr7.1:54123994-54124013 MS.gene050181:CDS 35.0%
GTGGTTAATCGTATAGATTC+TGG - chr7.1:54124279-54124298 MS.gene050181:CDS 35.0%
TAATCGTATAGATTCTGGCA+AGG - chr7.1:54124284-54124303 MS.gene050181:CDS 35.0%
TAGGTGACAAGTTTCAGTAT+TGG - chr7.1:54123824-54123843 MS.gene050181:CDS 35.0%
TCAAAGAAACACTGAAACCA+AGG - chr7.1:54123495-54123514 MS.gene050181:CDS 35.0%
TTACCAGTTGAAGCTTCTAA+GGG + chr7.1:54124702-54124721 None:intergenic 35.0%
TTTAATTCAAAGAACGGTGG+TGG - chr7.1:54124090-54124109 MS.gene050181:CDS 35.0%
TTTACCAGTTGAAGCTTCTA+AGG + chr7.1:54124703-54124722 None:intergenic 35.0%
! AAATGGTTTGTGTTGTTGGT+TGG + chr7.1:54123398-54123417 None:intergenic 35.0%
! AAGACGAAAGCATGTTATTG+TGG - chr7.1:54124972-54124991 MS.gene050181:CDS 35.0%
! ATTGATGATCGATGTGATAG+TGG - chr7.1:54124729-54124748 MS.gene050181:CDS 35.0%
! CTTGAAATGGTTTGTGTTGT+TGG + chr7.1:54123402-54123421 None:intergenic 35.0%
! TTTACGATGATGATGATCTG+AGG - chr7.1:54124841-54124860 MS.gene050181:CDS 35.0%
! TTTCTTGATTGGTGTTTCCT+TGG + chr7.1:54123515-54123534 None:intergenic 35.0%
! TTTTCGAAGATTCCTCTGTT+GGG - chr7.1:54124352-54124371 MS.gene050181:CDS 35.0%
!! ATTTTCAAGACTAAGGCGAA+AGG - chr7.1:54124471-54124490 MS.gene050181:CDS 35.0%
AAAGTCAGCTCATTCATGCT+CGG + chr7.1:54124903-54124922 None:intergenic 40.0%
AATGTCCCTGGAATAGAAGT+AGG - chr7.1:54123805-54123824 MS.gene050181:CDS 40.0%
ACAAATTGGGAGAACAACTG+TGG + chr7.1:54124806-54124825 None:intergenic 40.0%
ACCATACTTAGCAGCATCAA+TGG + chr7.1:54124763-54124782 None:intergenic 40.0%
ACCATTGATGCTGCTAAGTA+TGG - chr7.1:54124759-54124778 MS.gene050181:CDS 40.0%
AGAAGCTGTTCCTATATGTG+TGG - chr7.1:54124260-54124279 MS.gene050181:CDS 40.0%
AGAAGCTTCAACTGGTAAAG+AGG - chr7.1:54124704-54124723 MS.gene050181:CDS 40.0%
GAATCTTCGAAAAGCCATTC+AGG + chr7.1:54124345-54124364 None:intergenic 40.0%
GGTGAGGTGTATTGTTACTA+TGG - chr7.1:54124126-54124145 MS.gene050181:CDS 40.0%
TCACAAGGTCAATAGTTCGT+GGG - chr7.1:54124629-54124648 MS.gene050181:CDS 40.0%
TCAGAGAATGCAATTCCTTC+TGG - chr7.1:54124507-54124526 MS.gene050181:CDS 40.0%
TGTCACCTACTTCTATTCCA+GGG + chr7.1:54123813-54123832 None:intergenic 40.0%
TTCACAAGGTCAATAGTTCG+TGG - chr7.1:54124628-54124647 MS.gene050181:CDS 40.0%
TTCCTGTTGCAGACTTGAAA+TGG + chr7.1:54123415-54123434 None:intergenic 40.0%
TTGTCACCTACTTCTATTCC+AGG + chr7.1:54123814-54123833 None:intergenic 40.0%
! AACCATTTCAAGTCTGCAAC+AGG - chr7.1:54123410-54123429 MS.gene050181:CDS 40.0%
! AAGATCGTTTTGCTAGCTGA+AGG + chr7.1:54123568-54123587 None:intergenic 40.0%
! AGGAACAGCTTCTTTTCCAT+TGG + chr7.1:54124253-54124272 None:intergenic 40.0%
! CTTTTCGAAGATTCCTCTGT+TGG - chr7.1:54124351-54124370 MS.gene050181:CDS 40.0%
!! ATGATCGATGTGATAGTGGT+AGG - chr7.1:54124733-54124752 MS.gene050181:CDS 40.0%
!! CACAACGAGAGTATTGTCAA+AGG - chr7.1:54123471-54123490 MS.gene050181:CDS 40.0%
!! TCACGGGTTCTAAAACAAAG+AGG - chr7.1:54123748-54123767 MS.gene050181:CDS 40.0%
!! TTTGTGTTGTTGGTTGGTAG+TGG + chr7.1:54123392-54123411 None:intergenic 40.0%
AAGACTAAGGCGAAAGGATG+GGG - chr7.1:54124477-54124496 MS.gene050181:CDS 45.0%
AGAACATTTACGCCCAACAG+AGG + chr7.1:54124367-54124386 None:intergenic 45.0%
AGAACCCGTGACACTTTGAT+AGG + chr7.1:54123739-54123758 None:intergenic 45.0%
AGAGGCAAGTTCATTCACGA+TGG - chr7.1:54123766-54123785 MS.gene050181:CDS 45.0%
CAACCCTTAGAAGCTTCAAC+TGG - chr7.1:54124696-54124715 MS.gene050181:CDS 45.0%
CAAGACTAAGGCGAAAGGAT+GGG - chr7.1:54124476-54124495 MS.gene050181:CDS 45.0%
GAGGCAAGTTCATTCACGAT+GGG - chr7.1:54123767-54123786 MS.gene050181:CDS 45.0%
GAGTCATCGGAAGTCAAAGA+CGG + chr7.1:54123631-54123650 None:intergenic 45.0%
GCTGCATATAGCATGATGTG+TGG + chr7.1:54124870-54124889 None:intergenic 45.0%
GTGTTCGTTTATACAGGGGA+AGG - chr7.1:54123973-54123992 MS.gene050181:CDS 45.0%
TCAAGACTAAGGCGAAAGGA+TGG - chr7.1:54124475-54124494 MS.gene050181:CDS 45.0%
TGGCAAGAACTCAACGTTGT+TGG - chr7.1:54123844-54123863 MS.gene050181:CDS 45.0%
TTCGTTTATACAGGGGAAGG+AGG - chr7.1:54123976-54123995 MS.gene050181:CDS 45.0%
TTTGCCTGTGCTCTTAAGAG+TGG - chr7.1:54124399-54124418 MS.gene050181:CDS 45.0%
! CGCTTCCTATCAAAGTGTCA+CGG - chr7.1:54123731-54123750 MS.gene050181:CDS 45.0%
! CTAAGTATGGTAACGTGGCA+AGG - chr7.1:54124772-54124791 MS.gene050181:CDS 45.0%
! GCTTCCTATCAAAGTGTCAC+GGG - chr7.1:54123732-54123751 MS.gene050181:CDS 45.0%
! TGCTGCTAAGTATGGTAACG+TGG - chr7.1:54124767-54124786 MS.gene050181:CDS 45.0%
CAAGGTCAATAGTTCGTGGG+AGG - chr7.1:54124632-54124651 MS.gene050181:CDS 50.0%
CCTGTGCTCTTAAGAGTGGA+GGG - chr7.1:54124403-54124422 MS.gene050181:CDS 50.0%
CGTGCTCTCTGTGGAAAACT+CGG - chr7.1:54123688-54123707 MS.gene050181:CDS 50.0%
GTGGGAGGAGGATTCATCTA+TGG - chr7.1:54124647-54124666 MS.gene050181:CDS 50.0%
! CGAGTTTTCCACAGAGAGCA+CGG + chr7.1:54123690-54123709 None:intergenic 50.0%
!! TGGTTGGTAGTGGAAGACGA+GGG + chr7.1:54123382-54123401 None:intergenic 50.0%
!! TTGGTTGGTAGTGGAAGACG+AGG + chr7.1:54123383-54123402 None:intergenic 50.0%
GCCTGTGCTCTTAAGAGTGG+AGG - chr7.1:54124402-54124421 MS.gene050181:CDS 55.0%
GGTAACTTCCGTGCTCTCTG+TGG - chr7.1:54123679-54123698 MS.gene050181:CDS 55.0%
GGTCAATAGTTCGTGGGAGG+AGG - chr7.1:54124635-54124654 MS.gene050181:CDS 55.0%
! CCCTCCACTCTTAAGAGCAC+AGG + chr7.1:54124406-54124425 None:intergenic 55.0%
! TTTGATAGGAAGCGCGTCGC+CGG + chr7.1:54123725-54123744 None:intergenic 55.0%
! AAGAACGGTGGTGGTGCACG+TGG - chr7.1:54124099-54124118 MS.gene050181:CDS 60.0%
! AACGGTGGTGGTGCACGTGG+TGG - chr7.1:54124102-54124121 MS.gene050181:CDS 65.0%
! TGGTGCACGTGGTGGAGGTG+AGG - chr7.1:54124110-54124129 MS.gene050181:CDS 65.0%
! GGTGGTGGTGCACGTGGTGG+AGG - chr7.1:54124105-54124124 MS.gene050181:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 54123364 54125025 54123364 ID=MS.gene050181
chr7.1 mRNA 54123364 54125025 54123364 ID=MS.gene050181.t1;Parent=MS.gene050181
chr7.1 exon 54123364 54125025 54123364 ID=MS.gene050181.t1.exon1;Parent=MS.gene050181.t1
chr7.1 CDS 54123364 54125025 54123364 ID=cds.MS.gene050181.t1;Parent=MS.gene050181.t1
Gene Sequence

>MS.gene050181

ATGGCTAAGACGAAGCCCTCGTCTTCCACTACCAACCAACAACACAAACCATTTCAAGTCTGCAACAGGAACTTTACTGAAAGATTATTGTTGTTCAAGAATGTCAGCACAACGAGAGTATTGTCAAAGGTTCAAAGAAACACTGAAACCAAGGAAACACCAATCAAGAAACTGCGTTTAAAACGTTGTTATGCATATGAACCTTCAGCTAGCAAAACGATCTTAGAGAATCAGAGGAAAGAAAGAATCAATGACAAAAACATGCCGTCTTTGACTTCCGATGACTCAAGAAGAAAGAAAGTTAAAACAACATTAGGTAACTTCCGTGCTCTCTGTGGAAAACTCGGTAACGAATTTACCGGCGACGCGCTTCCTATCAAAGTGTCACGGGTTCTAAAACAAAGAGGCAAGTTCATTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATAGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAACGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACTAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGTTTATACAGGGGAAGGAGGTAATGTCATTAATTCTGGAGAATGTGATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGCACGTGGTGGAGGTGAGGTGTATTGTTACTATGGTCTTTATAAAGTCGAATCTATTTGGGAAAAAAAAGGGAAATTAGATTTTAAATTTTGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTATAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCAATAGTTCGTGGGAGGAGGATTCATCTATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAACTGGTAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACCATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCACAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACGATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTGTATTGA
Protein sequence

>MS.gene050181.t1

MAKTKPSSSTTNQQHKPFQVCNRNFTERLLLFKNVSTTRVLSKVQRNTETKETPIKKLRLKRCYAYEPSASKTILENQRKERINDKNMPSLTSDDSRRKKVKTTLGNFRALCGKLGNEFTGDALPIKVSRVLKQRGKFIHDGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFVYTGEGGNVINSGECDKGNLALMNSFAVKNPIRVIIKFNSKNGGGARGGGEVYCYYGLYKVESIWEKKGKLDFKFCLVRLPDQKFFVIDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNEIKFKLQIFKTKAKGWGVRSENAIPSGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVNSSWEEDSSMVDSKEMSSYQPLEASTGKEAIDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYDDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKACYCGASECIRRLY