AlfalfaGEDB | MS.gene05022

M. sativa cultivar XinJiangDaYe / MS.gene05022

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05022.t1	AES70883.2	93.3	283	18	1	5	286	6	288	2.50E-139	505

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05022.t1	F4KGY6	46.3	281	113	4	15	284	4	257	1.1e-50	201.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05022.t1	G7J7Y9	93.3	283	18	1	5	286	6	288	1.8e-139	505.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene05022.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05022.t1	MTR_3g064500	91.986	287	22	1	1	286	2	288	0.0	512
MS.gene05022.t1	MTR_5g076960	58.947	285	107	5	18	293	4	287	9.12e-95	287
MS.gene05022.t1	MTR_6g477860	45.230	283	136	8	1	269	1	278	9.94e-50	172
MS.gene05022.t1	MTR_5g076960	52.432	185	79	4	117	293	3	186	1.37e-37	136
MS.gene05022.t1	MTR_1g067000	56.122	98	35	1	45	142	36	125	5.37e-34	126
MS.gene05022.t1	MTR_8g028655	40.437	183	88	3	16	196	24	187	1.36e-31	120
MS.gene05022.t1	MTR_7g118330	65.049	103	34	1	37	137	7	109	7.34e-31	122
MS.gene05022.t1	MTR_0123s0070	52.941	102	40	1	36	137	30	123	1.26e-30	117
MS.gene05022.t1	MTR_0123s0070	52.941	102	40	1	36	137	30	123	1.98e-30	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05022.t1	AT5G17300	49.813	267	97	5	15	271	4	243	1.46e-56	187
MS.gene05022.t1	AT5G37260	46.614	251	59	6	33	272	12	198	8.40e-52	172
MS.gene05022.t1	AT1G18330	51.799	139	56	1	43	181	37	164	3.05e-33	125
MS.gene05022.t1	AT3G10113	51.799	139	56	1	43	181	52	179	3.44e-33	125
MS.gene05022.t1	AT1G18330	49.057	159	63	2	43	201	63	203	5.98e-33	125
MS.gene05022.t1	AT3G09600	54.455	101	38	1	37	137	24	116	2.03e-32	121
MS.gene05022.t1	AT3G09600	54.455	101	38	1	37	137	24	116	2.31e-32	121
MS.gene05022.t1	AT3G09600	54.455	101	38	1	37	137	24	116	2.31e-32	121
MS.gene05022.t1	AT3G09600	54.455	101	38	1	37	137	24	116	2.34e-32	122
MS.gene05022.t1	AT3G09600	54.455	101	38	1	37	137	24	116	2.34e-32	122

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Find 57 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCTTAAAGCTGTATGGC+CGG	0.499730	3.4:+66282279	MS.gene05022:CDS
AAGTGTAGATAAAACTGATT+TGG	0.347735	3.4:-66282884	None:intergenic
ACACTTGGTTCCGAAAGCCT+TGG	0.534605	3.4:+66282901	MS.gene05022:CDS
ACCATCTCAACTAGCTTGCG+AGG	0.635742	3.4:-66282775	None:intergenic
AGAAATTTCAATCCCGAAAA+AGG	0.302937	3.4:+66282807	MS.gene05022:CDS
AGCCTAGCTTCTTCCTCTGA+TGG	0.534831	3.4:-66283018	None:intergenic
AGCCTTAAAGCTGTATGGCC+GGG	0.555613	3.4:+66282280	MS.gene05022:CDS
AGGAAGTTAGTTACCAGAAG+AGG	0.529786	3.4:-66283069	None:intergenic
AGGAATTTCAATTGATTCCT+TGG	0.346980	3.4:-66282716	None:intergenic
AGTGTAGATAAAACTGATTT+GGG	0.427868	3.4:-66282883	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATCATACATGTATTCATG+TGG	+	chr3.4:66281807-66281826	MS.gene05022:intron	30.0%
ACTTAACATAGGCTTAGAAA+TGG	+	chr3.4:66281596-66281615	MS.gene05022:intron	30.0%
AGAAATTTCAATCCCGAAAA+AGG	+	chr3.4:66282807-66282826	MS.gene05022:CDS	30.0%
CAAACAATATGCAGTACTTA+GGG	+	chr3.4:66281743-66281762	MS.gene05022:intron	30.0%
CAGAAATCATTTATTCACCA+AGG	-	chr3.4:66281864-66281883	None:intergenic	30.0%
CATGACATACATGTTAGAAA+GGG	+	chr3.4:66283326-66283345	MS.gene05022:CDS	30.0%
CTCTGTTTCGATATAGTATA+TGG	-	chr3.4:66282221-66282240	None:intergenic	30.0%
GACTGTGTATAATATATGCA+AGG	+	chr3.4:66280923-66280942	MS.gene05022:intron	30.0%
GGATGACTAAAATCAAATGT+TGG	-	chr3.4:66280439-66280458	None:intergenic	30.0%
TATAATATATGCAAGGTTCG+AGG	+	chr3.4:66280930-66280949	MS.gene05022:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	66280140	66283413	66280140	ID=MS.gene05022
chr3.4	mRNA	66280140	66283413	66280140	ID=MS.gene05022.t1;Parent=MS.gene05022
chr3.4	exon	66280140	66280151	66280140	ID=MS.gene05022.t1.exon1;Parent=MS.gene05022.t1
chr3.4	CDS	66280140	66280151	66280140	ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1
chr3.4	exon	66281983	66282105	66281983	ID=MS.gene05022.t1.exon2;Parent=MS.gene05022.t1
chr3.4	CDS	66281983	66282105	66281983	ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1
chr3.4	exon	66282209	66282320	66282209	ID=MS.gene05022.t1.exon3;Parent=MS.gene05022.t1
chr3.4	CDS	66282209	66282320	66282209	ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1
chr3.4	exon	66282440	66282501	66282440	ID=MS.gene05022.t1.exon4;Parent=MS.gene05022.t1
chr3.4	CDS	66282440	66282501	66282440	ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1
chr3.4	exon	66282682	66283077	66282682	ID=MS.gene05022.t1.exon5;Parent=MS.gene05022.t1
chr3.4	CDS	66282682	66283077	66282682	ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1
chr3.4	exon	66283174	66283413	66283174	ID=MS.gene05022.t1.exon6;Parent=MS.gene05022.t1
chr3.4	CDS	66283174	66283413	66283174	ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1

Gene Sequence

>MS.gene05022

ATGGCGAATCAAGTATGTGTTTTAATATAAGATTATGCTGTGTTTTCTTTGATATTAATCATTTGATAATAAATATTTCATTTTTATAGAACACTTAGATTGTGGTTGATTTCTGATTTTATTTGTTCTAATTTTCAGATAAATATTCAAACTGTTTTTTTCCTTTTTTTTTGGTCAAAAAATACTGATTTTTTATTCTTTTATTTCTTTAGAGTGTCGATCATAGAAAATTATAAAAAAAAAAGTTTAAATAAGTAAAATGGTCCCTTGAAAAAGTATATGGTCCATTAAATATACCAACATTTGATTTTAGTCATCCTACAATATTTATTAAGTTTTTTATCCCTCCAACATTTTCCATCCATAAAATTAATCCATACTTTTTAGTCGGTCTAACCTTCATATTTTTTAATAATTTTTTTGTAGAAATGGATAGAATAGTATGACAATCTCTCAAAAAAATTAATTTTTTTTTTAATAAAACATGAATTAAATATGAATTTTTATTTTTATTTTCGCTAAAAAATTCATATTATGTTTTGTTAAAAAAATTATAATTTTTGGAAAATATTGTCATAATTTTTTAGAGGAATCAAAAGTCTGAGGAATATTTTAGGAGAACTAAAATCAAATAATGGTATAATTATAGGGATCATTACTTATTTAACCCTAAAGAAATTGTGCCGCTAACTTATTTTATGAAAAAATCAACCATCCTAAAAACTACACCTATAGACATAGACATAGGAGATCTTGTCTTTGTGGGCTTAGCTCAGTTGGTAGGACTGTGTATAATATATGCAAGGTTCGAGGTTGAAACCTCGGCCAACAAAAAAAGACATATGAGATCTTACTATGCATGCGATCTGAAATGTTAAGCTTGTACAACTTGTAGCTGGCGTTTGTGTGTCCTAAAAAAAATAGAAAATTTGTGTATTTTTTGTTCCACCTTTTGGAAATTGCAAAATTGATTTGGTATAATTGATTTTGGCATTTTTGAATGTTTTTAGTAGAACTTGATTCTAAAAATATGGTATGTAGTTTTTGACTCCAAACATGATTTTTATTTTTAAATTTATTGTACAATACATTTTTACGCTTAAAAAATAATCCCTACTTTTGGTACTGAAATGGATATGGATACAAATCACTTATTTATAATTTTTTTAATAATAATATTTAATACTTGATAAACACTCTACCCTTTTCAATTCAACATTTCTAAAAAAGTTACAAAATAAATCCCACAAAAATCTCAATATTATTACATTTTAATATTAAATAATACGTGAGACCCGCAGAGAAAGTGTGTTTAATGAAGTTCTCCTACTCCACAAGTACTATTCACTTGGAGGTACCTATTATGTACCAAAGCTTCTGTAGCTAAACTCTCATCATTGGGGGATGATCTTACTTTTAACTAAAATCAATTTTGTTACCGCAAAACCCAACACGCACTTAACATAGGCTTAGAAATGGAGAGATATCATAAATGAGTTGAATATATAGTTCTCAAAAAGTATTTGAATGTTTCACTTAGAAATTTTTTGAAGGGATTTAGAATTCCTTTGTTTTCAAAGAAGTATTTACTGTTTTTTCCCCTCAAACAATATGCAGTACTTAGGGATCCTTTCATTGTATAATTTTTGCTTTGATCGAATTTTGATACATCATACATGTATTCATGTGGAGGGAGAAATTCACTACAGAGATGAATGATTCCTTGGTGAATAAATGATTTCTGTTCTAGTAGGCTCTTAAGGTTGTCTTTACATCAAAATAAATTTTTGAGTACATCTTATTGATTACAATATAGCTTATATTTTTCTATTTCAAAATGTAGGATCAAGATGGATTAACTTGCTCCAGTGTTAGCCCTGCAGTAGGAAATGTAGCTGGATCGCATCCTGTTACTCATATTCAACTCAGCGATCAGTTATCTTGCGCGAGTGATTATGCTCTTAAGGTTCTCTATGGATTCTTGTTGATACACATTGAAAAGAATATTTAATTTTCATAATTAGTATCTTGTTTGTTTGTTTTAATTAATTTTCTTTGTACTTCAATAGGCAAGGAAACCATATACTATATCGAAACAGAGAGAAAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGGTATGGCTGGTTCGAAATTTCCATTTATTTGGAAAGTATAGCTAACAAGGAAATTAATTAATGAAGGAGTATGACTGTGCTTGGTCTAAGTTTTGAGATTATTTATTTTCTCGACACAGAATATGTCAGTTCAAAGACTGCGGTCCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTCTATTCTCATGCACACTTTTTGTACCATAAACCATAAACAAAACAATGCTAAGATTTTGATGGCCCTATAGGATATCTAAGTTAAGTGCAAATATGCAACTTATTTGAGATAGAAGGGTTCATCTATTTGTGTTTGAACTTCATTCTTGATTAACTCCTTTGTTTGATTCCATATCAGGTTCTTCGCGACACGAGTGCAAGCATTACAAACACCAAGGAATCAATTGAAATTCCTCCTCCTAGACCAAAACGTAAGCCTATGCACCCTTATCCTCGCAAGCTAGTTGAGATGGTCGGTAGTAAAGAAATTTCAATCCCGAAAAAGGCAATGAACTCTAATTCTCTGAAGACATCAGATTTTGATCAAGCAAACCAATCTCCCAAATCAGTTTTATCTACACTTGGTTCCGAAAGCCTTGGTTCATCCGATTCAGATACACCAAACGGAAGTTTATCTCCGATATCGATTACTTGTGTCCAAGCAAGTGTTTTCAGACCTGCTGAATTCAAAACGCCATCAGAGGAAGAAGCTAGGCTAGATGCTGACTCAGCTCATGATGAGAAACCTCTTCTGGTAACTAACTTCCTAATCCATTTCATCTTATTCACAATTATATCTTGAGAAAGTTATGCATGATTAATATGTTCCTGCACTTGATCTTATCGCTAGAAACTCGAGATTCTCTCTGATGAAAGTGTTTCTGCAAAAGAAAGCATAGCAGAAGAATCGTCTCGTCAAACTCTTAAACTTTTTGGGACGACTCTATTTATAAAAGATTTCTGCAAACCATCTTTTCCAACAATTGAGGCATGCAAACCAATCATGACATACATGTTAGAAAGGGAGGAGGAAAATTGGAACTTCTTGGAAAAAGTACACTATGCAAAACATCAGCCATATCTCAATTAA

Protein sequence

>MS.gene05022.t1

MANQDQDGLTCSSVSPAVGNVAGSHPVTHIQLSDQLSCASDYALKARKPYTISKQRERWTDEEHKKFLEALKLYGRAWRRIEEYVSSKTAVQIRSHAQKFFSKVLRDTSASITNTKESIEIPPPRPKRKPMHPYPRKLVEMVGSKEISIPKKAMNSNSLKTSDFDQANQSPKSVLSTLGSESLGSSDSDTPNGSLSPISITCVQASVFRPAEFKTPSEEEARLDADSAHDEKPLLKLEILSDESVSAKESIAEESSRQTLKLFGTTLFIKDFCKPSFPTIEACKPIMTYMLEREEENWNFLEKVHYAKHQPYLN