Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05022.t1 | AES70883.2 | 93.3 | 283 | 18 | 1 | 5 | 286 | 6 | 288 | 2.50E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05022.t1 | F4KGY6 | 46.3 | 281 | 113 | 4 | 15 | 284 | 4 | 257 | 1.1e-50 | 201.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05022.t1 | G7J7Y9 | 93.3 | 283 | 18 | 1 | 5 | 286 | 6 | 288 | 1.8e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05022.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05022.t1 | MTR_3g064500 | 91.986 | 287 | 22 | 1 | 1 | 286 | 2 | 288 | 0.0 | 512 |
| MS.gene05022.t1 | MTR_5g076960 | 58.947 | 285 | 107 | 5 | 18 | 293 | 4 | 287 | 9.12e-95 | 287 |
| MS.gene05022.t1 | MTR_6g477860 | 45.230 | 283 | 136 | 8 | 1 | 269 | 1 | 278 | 9.94e-50 | 172 |
| MS.gene05022.t1 | MTR_5g076960 | 52.432 | 185 | 79 | 4 | 117 | 293 | 3 | 186 | 1.37e-37 | 136 |
| MS.gene05022.t1 | MTR_1g067000 | 56.122 | 98 | 35 | 1 | 45 | 142 | 36 | 125 | 5.37e-34 | 126 |
| MS.gene05022.t1 | MTR_8g028655 | 40.437 | 183 | 88 | 3 | 16 | 196 | 24 | 187 | 1.36e-31 | 120 |
| MS.gene05022.t1 | MTR_7g118330 | 65.049 | 103 | 34 | 1 | 37 | 137 | 7 | 109 | 7.34e-31 | 122 |
| MS.gene05022.t1 | MTR_0123s0070 | 52.941 | 102 | 40 | 1 | 36 | 137 | 30 | 123 | 1.26e-30 | 117 |
| MS.gene05022.t1 | MTR_0123s0070 | 52.941 | 102 | 40 | 1 | 36 | 137 | 30 | 123 | 1.98e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05022.t1 | AT5G17300 | 49.813 | 267 | 97 | 5 | 15 | 271 | 4 | 243 | 1.46e-56 | 187 |
| MS.gene05022.t1 | AT5G37260 | 46.614 | 251 | 59 | 6 | 33 | 272 | 12 | 198 | 8.40e-52 | 172 |
| MS.gene05022.t1 | AT1G18330 | 51.799 | 139 | 56 | 1 | 43 | 181 | 37 | 164 | 3.05e-33 | 125 |
| MS.gene05022.t1 | AT3G10113 | 51.799 | 139 | 56 | 1 | 43 | 181 | 52 | 179 | 3.44e-33 | 125 |
| MS.gene05022.t1 | AT1G18330 | 49.057 | 159 | 63 | 2 | 43 | 201 | 63 | 203 | 5.98e-33 | 125 |
| MS.gene05022.t1 | AT3G09600 | 54.455 | 101 | 38 | 1 | 37 | 137 | 24 | 116 | 2.03e-32 | 121 |
| MS.gene05022.t1 | AT3G09600 | 54.455 | 101 | 38 | 1 | 37 | 137 | 24 | 116 | 2.31e-32 | 121 |
| MS.gene05022.t1 | AT3G09600 | 54.455 | 101 | 38 | 1 | 37 | 137 | 24 | 116 | 2.31e-32 | 121 |
| MS.gene05022.t1 | AT3G09600 | 54.455 | 101 | 38 | 1 | 37 | 137 | 24 | 116 | 2.34e-32 | 122 |
| MS.gene05022.t1 | AT3G09600 | 54.455 | 101 | 38 | 1 | 37 | 137 | 24 | 116 | 2.34e-32 | 122 |
| MS.gene05022.t1 | AT1G01520 | 41.477 | 176 | 83 | 5 | 20 | 195 | 26 | 181 | 1.02e-31 | 119 |
| MS.gene05022.t1 | AT1G01520 | 41.477 | 176 | 83 | 5 | 20 | 195 | 26 | 181 | 1.02e-31 | 119 |
| MS.gene05022.t1 | AT1G01520 | 41.477 | 176 | 83 | 5 | 20 | 195 | 26 | 181 | 1.34e-31 | 119 |
| MS.gene05022.t1 | AT1G01520 | 41.477 | 176 | 83 | 5 | 20 | 195 | 26 | 181 | 1.50e-31 | 119 |
| MS.gene05022.t1 | AT4G01280 | 53.043 | 115 | 44 | 2 | 23 | 137 | 28 | 132 | 1.21e-30 | 117 |
| MS.gene05022.t1 | AT4G01280 | 53.043 | 115 | 44 | 2 | 23 | 137 | 28 | 132 | 1.22e-30 | 117 |
| MS.gene05022.t1 | AT2G46830 | 57.851 | 121 | 45 | 2 | 37 | 155 | 5 | 121 | 1.50e-30 | 121 |
| MS.gene05022.t1 | AT5G02840 | 55.914 | 93 | 33 | 1 | 45 | 137 | 37 | 121 | 2.02e-30 | 117 |
| MS.gene05022.t1 | AT5G02840 | 55.914 | 93 | 33 | 1 | 45 | 137 | 37 | 121 | 2.02e-30 | 117 |
| MS.gene05022.t1 | AT5G02840 | 55.914 | 93 | 33 | 1 | 45 | 137 | 37 | 121 | 2.15e-30 | 116 |
| MS.gene05022.t1 | AT5G02840 | 55.914 | 93 | 33 | 1 | 45 | 137 | 37 | 121 | 2.23e-30 | 116 |
| MS.gene05022.t1 | AT5G02840 | 55.914 | 93 | 33 | 1 | 45 | 137 | 37 | 121 | 3.13e-30 | 116 |
| MS.gene05022.t1 | AT5G52660 | 53.465 | 101 | 39 | 1 | 37 | 137 | 53 | 145 | 3.57e-30 | 117 |
| MS.gene05022.t1 | AT5G52660 | 53.465 | 101 | 39 | 1 | 37 | 137 | 53 | 145 | 3.73e-30 | 117 |
| MS.gene05022.t1 | AT1G01060 | 57.143 | 126 | 51 | 2 | 45 | 167 | 13 | 138 | 1.08e-29 | 119 |
| MS.gene05022.t1 | AT1G01060 | 57.143 | 126 | 51 | 2 | 45 | 167 | 13 | 138 | 1.08e-29 | 119 |
| MS.gene05022.t1 | AT1G01060 | 57.143 | 126 | 51 | 2 | 45 | 167 | 13 | 138 | 1.08e-29 | 119 |
| MS.gene05022.t1 | AT1G01060 | 57.143 | 126 | 51 | 2 | 45 | 167 | 13 | 138 | 1.08e-29 | 119 |
| MS.gene05022.t1 | AT1G01060 | 57.143 | 126 | 51 | 2 | 45 | 167 | 13 | 138 | 1.08e-29 | 119 |
| MS.gene05022.t1 | AT1G01060 | 57.143 | 126 | 51 | 2 | 45 | 167 | 13 | 138 | 1.09e-29 | 119 |
| MS.gene05022.t1 | AT5G17300 | 45.550 | 191 | 77 | 4 | 81 | 271 | 5 | 168 | 1.78e-22 | 95.9 |
| MS.gene05022.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 74 | 137 | 5 | 60 | 1.98e-15 | 74.7 |
| MS.gene05022.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 74 | 137 | 5 | 60 | 1.98e-15 | 74.7 |
| MS.gene05022.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 74 | 137 | 5 | 60 | 2.05e-15 | 74.7 |
| MS.gene05022.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 74 | 137 | 5 | 60 | 2.05e-15 | 74.7 |
Find 57 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCGGCCATACAGCTTTA+AGG | 0.174526 | 3.4:-66282282 | None:intergenic |
| CTCTGTTTCGATATAGTATA+TGG | 0.282091 | 3.4:-66282218 | None:intergenic |
| CGCGAGTGATTATGCTCTTA+AGG | 0.302702 | 3.4:+66282084 | MS.gene05022:CDS |
| AGAAATTTCAATCCCGAAAA+AGG | 0.302937 | 3.4:+66282807 | MS.gene05022:CDS |
| GGAGGAAAATTGGAACTTCT+TGG | 0.327774 | 3.4:+66283350 | MS.gene05022:CDS |
| TAGAAAGGGAGGAGGAAAAT+TGG | 0.340113 | 3.4:+66283340 | MS.gene05022:CDS |
| AGGAATTTCAATTGATTCCT+TGG | 0.346980 | 3.4:-66282716 | None:intergenic |
| AAGTGTAGATAAAACTGATT+TGG | 0.347735 | 3.4:-66282884 | None:intergenic |
| GCCTCAATTGTTGGAAAAGA+TGG | 0.348970 | 3.4:-66283291 | None:intergenic |
| TCTGAGCATGACTTCGAATC+TGG | 0.349813 | 3.4:-66282465 | None:intergenic |
| ATAAAACTGATTTGGGAGAT+TGG | 0.361687 | 3.4:-66282876 | None:intergenic |
| TCTAACATGTATGTCATGAT+TGG | 0.376918 | 3.4:-66283321 | None:intergenic |
| CTGAGTTGAATATGAGTAAC+AGG | 0.381118 | 3.4:-66282046 | None:intergenic |
| TCAACTAGCTTGCGAGGATA+AGG | 0.387638 | 3.4:-66282769 | None:intergenic |
| TCTAACTCTTAATTGAGATA+TGG | 0.400488 | 3.4:-66283399 | None:intergenic |
| TCATGATGAGAAACCTCTTC+TGG | 0.400783 | 3.4:+66283056 | MS.gene05022:CDS |
| ATCGGATGAACCAAGGCTTT+CGG | 0.424992 | 3.4:-66282911 | None:intergenic |
| CGGGCCTGGCGACGCATTGA+AGG | 0.426529 | 3.4:+66282299 | MS.gene05022:CDS |
| GGGTGCATAGGCTTACGTTT+TGG | 0.427838 | 3.4:-66282748 | None:intergenic |
| AGTGTAGATAAAACTGATTT+GGG | 0.427868 | 3.4:-66282883 | None:intergenic |
| CTTGAAGCCTTAAAGCTGTA+TGG | 0.441266 | 3.4:+66282275 | MS.gene05022:CDS |
| TCCGTTTGGTGTATCTGAAT+CGG | 0.446379 | 3.4:-66282929 | None:intergenic |
| GGTTTGCATGCCTCAATTGT+TGG | 0.453490 | 3.4:-66283300 | None:intergenic |
| CAGGTCTGAAAACACTTGCT+TGG | 0.457820 | 3.4:-66282981 | None:intergenic |
| CAACTAGCTTGCGAGGATAA+GGG | 0.462388 | 3.4:-66282768 | None:intergenic |
| TTCAAAATGTAGGATCAAGA+TGG | 0.466323 | 3.4:+66281971 | MS.gene05022:intron |
| TAAAGCTGTATGGCCGGGCC+TGG | 0.467187 | 3.4:+66282285 | MS.gene05022:CDS |
| CATACAGCTTTAAGGCTTCA+AGG | 0.472400 | 3.4:-66282274 | None:intergenic |
| ATCGGAGATAAACTTCCGTT+TGG | 0.476291 | 3.4:-66282943 | None:intergenic |
| CCAGCTACATTTCCTACTGC+AGG | 0.478856 | 3.4:-66282016 | None:intergenic |
| CTTCAATGCGTCGCCAGGCC+CGG | 0.484298 | 3.4:-66282298 | None:intergenic |
| TCATGACATACATGTTAGAA+AGG | 0.487347 | 3.4:+66283325 | MS.gene05022:CDS |
| CATACCTTCAATGCGTCGCC+AGG | 0.491595 | 3.4:-66282303 | None:intergenic |
| TGGACACAAGTAATCGATAT+CGG | 0.496582 | 3.4:-66282961 | None:intergenic |
| AAGCCTTAAAGCTGTATGGC+CGG | 0.499730 | 3.4:+66282279 | MS.gene05022:CDS |
| AGGAAGTTAGTTACCAGAAG+AGG | 0.529786 | 3.4:-66283069 | None:intergenic |
| ACACTTGGTTCCGAAAGCCT+TGG | 0.534605 | 3.4:+66282901 | MS.gene05022:CDS |
| AGCCTAGCTTCTTCCTCTGA+TGG | 0.534831 | 3.4:-66283018 | None:intergenic |
| TATCGAAACAGAGAGAAAGA+TGG | 0.552512 | 3.4:+66282228 | MS.gene05022:CDS |
| TCCTACTGCAGGGCTAACAC+TGG | 0.552965 | 3.4:-66282005 | None:intergenic |
| AGCCTTAAAGCTGTATGGCC+GGG | 0.555613 | 3.4:+66282280 | MS.gene05022:CDS |
| CATGACATACATGTTAGAAA+GGG | 0.558691 | 3.4:+66283326 | MS.gene05022:CDS |
| CGCCATCAGAGGAAGAAGCT+AGG | 0.562418 | 3.4:+66283016 | MS.gene05022:CDS |
| TCCTCGCAAGCTAGTTGAGA+TGG | 0.569053 | 3.4:+66282774 | MS.gene05022:CDS |
| TCCGATTCAGATACACCAAA+CGG | 0.581293 | 3.4:+66282928 | MS.gene05022:CDS |
| TTGCGAGGATAAGGGTGCAT+AGG | 0.596615 | 3.4:-66282760 | None:intergenic |
| GACATACATGTTAGAAAGGG+AGG | 0.598447 | 3.4:+66283329 | MS.gene05022:CDS |
| CCTGCAGTAGGAAATGTAGC+TGG | 0.607570 | 3.4:+66282016 | MS.gene05022:CDS |
| TGAATTCAAAACGCCATCAG+AGG | 0.625902 | 3.4:+66283005 | MS.gene05022:CDS |
| CGCAAGCTAGTTGAGATGGT+CGG | 0.633361 | 3.4:+66282778 | MS.gene05022:CDS |
| ATACATGTTAGAAAGGGAGG+AGG | 0.634259 | 3.4:+66283332 | MS.gene05022:CDS |
| ACCATCTCAACTAGCTTGCG+AGG | 0.635742 | 3.4:-66282775 | None:intergenic |
| CAGCTACATTTCCTACTGCA+GGG | 0.637750 | 3.4:-66282015 | None:intergenic |
| TATCTGAATCGGATGAACCA+AGG | 0.665190 | 3.4:-66282918 | None:intergenic |
| TCCAGTGTTAGCCCTGCAGT+AGG | 0.679374 | 3.4:+66282004 | MS.gene05022:CDS |
| TGCAAGCATTACAAACACCA+AGG | 0.703682 | 3.4:+66282699 | MS.gene05022:CDS |
| ATATGTCAGTTCAAAGACTG+CGG | 0.716047 | 3.4:+66282441 | MS.gene05022:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTAATAAATATTGT+AGG | - | chr3.4:66280460-66280479 | None:intergenic | 10.0% |
| !! | AAAAGTTTAAATAAGTAAAA+TGG | + | chr3.4:66280380-66280399 | MS.gene05022:intron | 10.0% |
| !! | TTAAAAATAAAAATCATGTT+TGG | - | chr3.4:66281193-66281212 | None:intergenic | 10.0% |
| !!! | ACAAATTTTCTATTTTTTTT+AGG | - | chr3.4:66281053-66281072 | None:intergenic | 10.0% |
| !!! | TAATAATTTTTTTGTAGAAA+TGG | + | chr3.4:66280549-66280568 | MS.gene05022:intron | 10.0% |
| !! | CAAATAATGGTATAATTATA+GGG | + | chr3.4:66280768-66280787 | MS.gene05022:intron | 15.0% |
| !! | TCAAATAATGGTATAATTAT+AGG | + | chr3.4:66280767-66280786 | MS.gene05022:intron | 15.0% |
| !!! | AAAAGTATGGATTAATTTTA+TGG | - | chr3.4:66280504-66280523 | None:intergenic | 15.0% |
| !!! | AATAATATTGAGATTTTTGT+GGG | - | chr3.4:66281386-66281405 | None:intergenic | 15.0% |
| !!! | ATATTGTCATAATTTTTTAG+AGG | + | chr3.4:66280707-66280726 | MS.gene05022:intron | 15.0% |
| !!! | ATTTTTCTATTTCAAAATGT+AGG | + | chr3.4:66281961-66281980 | MS.gene05022:intron | 15.0% |
| !!! | TAATAATATTGAGATTTTTG+TGG | - | chr3.4:66281387-66281406 | None:intergenic | 15.0% |
| !!! | TATTTTTTGACCAAAAAAAA+AGG | - | chr3.4:66280304-66280323 | None:intergenic | 15.0% |
| !!! | TTTTTCATAAAATAAGTTAG+CGG | - | chr3.4:66280826-66280845 | None:intergenic | 15.0% |
| !! | ACAAGGAAATTAATTAATGA+AGG | + | chr3.4:66282365-66282384 | MS.gene05022:intron | 20.0% |
| !! | AGCAAAAATTATACAATGAA+AGG | - | chr3.4:66281771-66281790 | None:intergenic | 20.0% |
| !! | TAATTGTGAATAAGATGAAA+TGG | - | chr3.4:66283098-66283117 | None:intergenic | 20.0% |
| !! | TAGAAATGTTGAATTGAAAA+GGG | - | chr3.4:66281344-66281363 | None:intergenic | 20.0% |
| !! | TCAAATGTTGGTATATTTAA+TGG | - | chr3.4:66280427-66280446 | None:intergenic | 20.0% |
| !! | TTAGAAATGTTGAATTGAAA+AGG | - | chr3.4:66281345-66281364 | None:intergenic | 20.0% |
| !!! | AAATACTTCTTTGAAAACAA+AGG | - | chr3.4:66281708-66281727 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTGTACTTCAAT+AGG | + | chr3.4:66282187-66282206 | MS.gene05022:intron | 20.0% |
| !!! | AGAACTTGATTCTAAAAATA+TGG | + | chr3.4:66281151-66281170 | MS.gene05022:intron | 20.0% |
| !!! | ATTAATCCATACTTTTTAGT+CGG | + | chr3.4:66280508-66280527 | MS.gene05022:intron | 20.0% |
| !!! | ATTGTTTTGTTTATGGTTTA+TGG | - | chr3.4:66282531-66282550 | None:intergenic | 20.0% |
| !!! | CTGTTTTTTTCCTTTTTTTT+TGG | + | chr3.4:66280291-66280310 | MS.gene05022:intron | 20.0% |
| !!! | TAAAAAATAATCCCTACTTT+TGG | + | chr3.4:66281240-66281259 | MS.gene05022:intron | 20.0% |
| !!! | TCACTTAGAAATTTTTTGAA+GGG | + | chr3.4:66281672-66281691 | MS.gene05022:intron | 20.0% |
| !!! | TGATTTGGTATAATTGATTT+TGG | + | chr3.4:66281108-66281127 | MS.gene05022:intron | 20.0% |
| !!! | TTCACTTAGAAATTTTTTGA+AGG | + | chr3.4:66281671-66281690 | MS.gene05022:intron | 20.0% |
| ! | AAGTGTAGATAAAACTGATT+TGG | - | chr3.4:66282887-66282906 | None:intergenic | 25.0% |
| ! | ACTTAACTTAGATATCCTAT+AGG | - | chr3.4:66282571-66282590 | None:intergenic | 25.0% |
| ! | AGCTATACTTTCCAAATAAA+TGG | - | chr3.4:66282344-66282363 | None:intergenic | 25.0% |
| ! | CTTAACTTAGATATCCTATA+GGG | - | chr3.4:66282570-66282589 | None:intergenic | 25.0% |
| ! | GGAGAACTAAAATCAAATAA+TGG | + | chr3.4:66280755-66280774 | MS.gene05022:intron | 25.0% |
| ! | GTTCGAAATTTCCATTTATT+TGG | + | chr3.4:66282330-66282349 | MS.gene05022:intron | 25.0% |
| ! | TAAATGATTTCTGTTCTAGT+AGG | + | chr3.4:66281871-66281890 | MS.gene05022:intron | 25.0% |
| ! | TGGAAATTGCAAAATTGATT+TGG | + | chr3.4:66281093-66281112 | MS.gene05022:intron | 25.0% |
| ! | TTTATAGAACACTTAGATTG+TGG | + | chr3.4:66280222-66280241 | MS.gene05022:intron | 25.0% |
| !! | AAAAGTCTGAGGAATATTTT+AGG | + | chr3.4:66280734-66280753 | MS.gene05022:intron | 25.0% |
| !! | AAACAATGCTAAGATTTTGA+TGG | + | chr3.4:66282544-66282563 | MS.gene05022:intron | 25.0% |
| !! | AGTGTAGATAAAACTGATTT+GGG | - | chr3.4:66282886-66282905 | None:intergenic | 25.0% |
| !! | ATTTTATGGATGGAAAATGT+TGG | - | chr3.4:66280490-66280509 | None:intergenic | 25.0% |
| !! | GTCAAACTCTTAAACTTTTT+GGG | + | chr3.4:66283238-66283257 | MS.gene05022:CDS | 25.0% |
| !! | TCAATTTTGCAATTTCCAAA+AGG | - | chr3.4:66281091-66281110 | None:intergenic | 25.0% |
| !! | TGAATAAGATGAAATGGATT+AGG | - | chr3.4:66283092-66283111 | None:intergenic | 25.0% |
| !!! | AAATCAGTTTTATCTACACT+TGG | + | chr3.4:66282886-66282905 | MS.gene05022:CDS | 25.0% |
| !!! | GTATGGATTAATTTTATGGA+TGG | - | chr3.4:66280500-66280519 | None:intergenic | 25.0% |
| !!! | TCTCATATGTCTTTTTTTGT+TGG | - | chr3.4:66280968-66280987 | None:intergenic | 25.0% |
| !!! | TCTTAGCATTGTTTTGTTTA+TGG | - | chr3.4:66282538-66282557 | None:intergenic | 25.0% |
| ACATCATACATGTATTCATG+TGG | + | chr3.4:66281807-66281826 | MS.gene05022:intron | 30.0% | |
| ACTTAACATAGGCTTAGAAA+TGG | + | chr3.4:66281596-66281615 | MS.gene05022:intron | 30.0% | |
| AGAAATTTCAATCCCGAAAA+AGG | + | chr3.4:66282807-66282826 | MS.gene05022:CDS | 30.0% | |
| CAAACAATATGCAGTACTTA+GGG | + | chr3.4:66281743-66281762 | MS.gene05022:intron | 30.0% | |
| CAGAAATCATTTATTCACCA+AGG | - | chr3.4:66281864-66281883 | None:intergenic | 30.0% | |
| CATGACATACATGTTAGAAA+GGG | + | chr3.4:66283326-66283345 | MS.gene05022:CDS | 30.0% | |
| CTCTGTTTCGATATAGTATA+TGG | - | chr3.4:66282221-66282240 | None:intergenic | 30.0% | |
| GACTGTGTATAATATATGCA+AGG | + | chr3.4:66280923-66280942 | MS.gene05022:intron | 30.0% | |
| GGATGACTAAAATCAAATGT+TGG | - | chr3.4:66280439-66280458 | None:intergenic | 30.0% | |
| TATAATATATGCAAGGTTCG+AGG | + | chr3.4:66280930-66280949 | MS.gene05022:intron | 30.0% | |
| TCAAACAATATGCAGTACTT+AGG | + | chr3.4:66281742-66281761 | MS.gene05022:intron | 30.0% | |
| TCATGACATACATGTTAGAA+AGG | + | chr3.4:66283325-66283344 | MS.gene05022:CDS | 30.0% | |
| TCTAACATGTATGTCATGAT+TGG | - | chr3.4:66283324-66283343 | None:intergenic | 30.0% | |
| TTCAAAATGTAGGATCAAGA+TGG | + | chr3.4:66281971-66281990 | MS.gene05022:intron | 30.0% | |
| ! | AAGTACTGCATATTGTTTGA+GGG | - | chr3.4:66281742-66281761 | None:intergenic | 30.0% |
| ! | AGGAATTTCAATTGATTCCT+TGG | - | chr3.4:66282719-66282738 | None:intergenic | 30.0% |
| ! | ATTTTGCAATTTCCAAAAGG+TGG | - | chr3.4:66281088-66281107 | None:intergenic | 30.0% |
| ! | CGTCAAACTCTTAAACTTTT+TGG | + | chr3.4:66283237-66283256 | MS.gene05022:CDS | 30.0% |
| ! | GCAACTTATTTGAGATAGAA+GGG | + | chr3.4:66282599-66282618 | MS.gene05022:intron | 30.0% |
| ! | TAAGTACTGCATATTGTTTG+AGG | - | chr3.4:66281743-66281762 | None:intergenic | 30.0% |
| ! | TGCAACTTATTTGAGATAGA+AGG | + | chr3.4:66282598-66282617 | MS.gene05022:intron | 30.0% |
| ! | TGTCTATAGGTGTAGTTTTT+AGG | - | chr3.4:66280858-66280877 | None:intergenic | 30.0% |
| ! | TTAGAGTTCATTGCCTTTTT+CGG | - | chr3.4:66282823-66282842 | None:intergenic | 30.0% |
| ! | TTTGGAAAGTATAGCTAACA+AGG | + | chr3.4:66282348-66282367 | MS.gene05022:intron | 30.0% |
| !! | ATAAAACTGATTTGGGAGAT+TGG | - | chr3.4:66282879-66282898 | None:intergenic | 30.0% |
| !! | TATAGGTGTAGTTTTTAGGA+TGG | - | chr3.4:66280854-66280873 | None:intergenic | 30.0% |
| !! | TTTTGGTACTGAAATGGATA+TGG | + | chr3.4:66281257-66281276 | MS.gene05022:intron | 30.0% |
| !!! | ATGGACCATATACTTTTTCA+AGG | - | chr3.4:66280408-66280427 | None:intergenic | 30.0% |
| !!! | GTATTTTTTGTTCCACCTTT+TGG | + | chr3.4:66281073-66281092 | MS.gene05022:intron | 30.0% |
| !!! | TGCTCAGAAGTTTTTTTCTA+AGG | + | chr3.4:66282480-66282499 | MS.gene05022:CDS | 30.0% |
| !!! | TGGACCATATACTTTTTCAA+GGG | - | chr3.4:66280407-66280426 | None:intergenic | 30.0% |
| ACACCTATAGACATAGACAT+AGG | + | chr3.4:66280865-66280884 | MS.gene05022:intron | 35.0% | |
| AGTACTGCATATTGTTTGAG+GGG | - | chr3.4:66281741-66281760 | None:intergenic | 35.0% | |
| ATAGGAGATCTTGTCTTTGT+GGG | + | chr3.4:66280883-66280902 | MS.gene05022:intron | 35.0% | |
| ATATGTCAGTTCAAAGACTG+CGG | + | chr3.4:66282441-66282460 | MS.gene05022:CDS | 35.0% | |
| ATTAAACACACTTTCTCTGC+GGG | - | chr3.4:66281437-66281456 | None:intergenic | 35.0% | |
| CATACATGTATTCATGTGGA+GGG | + | chr3.4:66281811-66281830 | MS.gene05022:intron | 35.0% | |
| CATTAAACACACTTTCTCTG+CGG | - | chr3.4:66281438-66281457 | None:intergenic | 35.0% | |
| CCATTTCAGTACCAAAAGTA+GGG | - | chr3.4:66281254-66281273 | None:intergenic | 35.0% | |
| CCTGATATGGAATCAAACAA+AGG | - | chr3.4:66282663-66282682 | None:intergenic | 35.0% | |
| GTAGCTAAACTCTCATCATT+GGG | + | chr3.4:66281519-66281538 | MS.gene05022:intron | 35.0% | |
| GTTAGACCGACTAAAAAGTA+TGG | - | chr3.4:66280517-66280536 | None:intergenic | 35.0% | |
| TACAGAGATGAATGATTCCT+TGG | + | chr3.4:66281844-66281863 | MS.gene05022:intron | 35.0% | |
| TAGCTAAACTCTCATCATTG+GGG | + | chr3.4:66281520-66281539 | MS.gene05022:intron | 35.0% | |
| TATCGAAACAGAGAGAAAGA+TGG | + | chr3.4:66282228-66282247 | MS.gene05022:CDS | 35.0% | |
| TATGCTCTTAAGGTTCTCTA+TGG | + | chr3.4:66282094-66282113 | MS.gene05022:intron | 35.0% | |
| TATGGATGGAAAATGTTGGA+GGG | - | chr3.4:66280486-66280505 | None:intergenic | 35.0% | |
| TCATACATGTATTCATGTGG+AGG | + | chr3.4:66281810-66281829 | MS.gene05022:intron | 35.0% | |
| TCCATTTCAGTACCAAAAGT+AGG | - | chr3.4:66281255-66281274 | None:intergenic | 35.0% | |
| TCTCCTATGTCTATGTCTAT+AGG | - | chr3.4:66280871-66280890 | None:intergenic | 35.0% | |
| TCTTTGTACTTCAATAGGCA+AGG | + | chr3.4:66282192-66282211 | MS.gene05022:intron | 35.0% | |
| TGGACACAAGTAATCGATAT+CGG | - | chr3.4:66282964-66282983 | None:intergenic | 35.0% | |
| TGTAGCTAAACTCTCATCAT+TGG | + | chr3.4:66281518-66281537 | MS.gene05022:intron | 35.0% | |
| TTAGAGGAATCAAAAGTCTG+AGG | + | chr3.4:66280723-66280742 | MS.gene05022:intron | 35.0% | |
| TTAGCGGCACAATTTCTTTA+GGG | - | chr3.4:66280810-66280829 | None:intergenic | 35.0% | |
| TTATGGATGGAAAATGTTGG+AGG | - | chr3.4:66280487-66280506 | None:intergenic | 35.0% | |
| ! | ACCATCTTTTCCAACAATTG+AGG | + | chr3.4:66283290-66283309 | MS.gene05022:CDS | 35.0% |
| ! | CAGAAGCTTTGGTACATAAT+AGG | - | chr3.4:66281500-66281519 | None:intergenic | 35.0% |
| ! | CCTTTGTTTGATTCCATATC+AGG | + | chr3.4:66282660-66282679 | MS.gene05022:intron | 35.0% |
| ! | CTGAGTTGAATATGAGTAAC+AGG | - | chr3.4:66282049-66282068 | None:intergenic | 35.0% |
| ! | TAGAGTTCATTGCCTTTTTC+GGG | - | chr3.4:66282822-66282841 | None:intergenic | 35.0% |
| ! | TGGTCCCTTGAAAAAGTATA+TGG | + | chr3.4:66280400-66280419 | MS.gene05022:intron | 35.0% |
| !! | TAAGATTTTGATGGCCCTAT+AGG | + | chr3.4:66282553-66282572 | MS.gene05022:intron | 35.0% |
| AAGCTTGTACAACTTGTAGC+TGG | + | chr3.4:66281016-66281035 | MS.gene05022:intron | 40.0% | |
| AGCTAAACTCTCATCATTGG+GGG | + | chr3.4:66281521-66281540 | MS.gene05022:intron | 40.0% | |
| AGGAAGTTAGTTACCAGAAG+AGG | - | chr3.4:66283072-66283091 | None:intergenic | 40.0% | |
| ATACATGTTAGAAAGGGAGG+AGG | + | chr3.4:66283332-66283351 | MS.gene05022:CDS | 40.0% | |
| ATCGGAGATAAACTTCCGTT+TGG | - | chr3.4:66282946-66282965 | None:intergenic | 40.0% | |
| CACAAGTACTATTCACTTGG+AGG | + | chr3.4:66281472-66281491 | MS.gene05022:intron | 40.0% | |
| CATAGGAGATCTTGTCTTTG+TGG | + | chr3.4:66280882-66280901 | MS.gene05022:intron | 40.0% | |
| CTCCAAGTGAATAGTACTTG+TGG | - | chr3.4:66281474-66281493 | None:intergenic | 40.0% | |
| CTCCACAAGTACTATTCACT+TGG | + | chr3.4:66281469-66281488 | MS.gene05022:intron | 40.0% | |
| CTTGAAGCCTTAAAGCTGTA+TGG | + | chr3.4:66282275-66282294 | MS.gene05022:CDS | 40.0% | |
| GACATACATGTTAGAAAGGG+AGG | + | chr3.4:66283329-66283348 | MS.gene05022:CDS | 40.0% | |
| GAGTTTAGCTACAGAAGCTT+TGG | - | chr3.4:66281511-66281530 | None:intergenic | 40.0% | |
| GCCTCAATTGTTGGAAAAGA+TGG | - | chr3.4:66283294-66283313 | None:intergenic | 40.0% | |
| GGAGGAAAATTGGAACTTCT+TGG | + | chr3.4:66283350-66283369 | MS.gene05022:CDS | 40.0% | |
| GTGAATAGTACTTGTGGAGT+AGG | - | chr3.4:66281468-66281487 | None:intergenic | 40.0% | |
| GTTAGCGGCACAATTTCTTT+AGG | - | chr3.4:66280811-66280830 | None:intergenic | 40.0% | |
| TAGAAAGGGAGGAGGAAAAT+TGG | + | chr3.4:66283340-66283359 | MS.gene05022:CDS | 40.0% | |
| TATCTGAATCGGATGAACCA+AGG | - | chr3.4:66282921-66282940 | None:intergenic | 40.0% | |
| TCATGATGAGAAACCTCTTC+TGG | + | chr3.4:66283056-66283075 | MS.gene05022:CDS | 40.0% | |
| TCCGATTCAGATACACCAAA+CGG | + | chr3.4:66282928-66282947 | MS.gene05022:CDS | 40.0% | |
| TCTGTTCTAGTAGGCTCTTA+AGG | + | chr3.4:66281880-66281899 | MS.gene05022:intron | 40.0% | |
| TGAATTCAAAACGCCATCAG+AGG | + | chr3.4:66283005-66283024 | MS.gene05022:CDS | 40.0% | |
| TGCAAGCATTACAAACACCA+AGG | + | chr3.4:66282699-66282718 | MS.gene05022:CDS | 40.0% | |
| !! | ATAGGCTTACGTTTTGGTCT+AGG | - | chr3.4:66282745-66282764 | None:intergenic | 40.0% |
| !! | CATACAGCTTTAAGGCTTCA+AGG | - | chr3.4:66282277-66282296 | None:intergenic | 40.0% |
| !! | CCCTACTTTTGGTACTGAAA+TGG | + | chr3.4:66281251-66281270 | MS.gene05022:intron | 40.0% |
| !! | TCCGTTTGGTGTATCTGAAT+CGG | - | chr3.4:66282932-66282951 | None:intergenic | 40.0% |
| !!! | ATGTCTTTTTTTGTTGGCCG+AGG | - | chr3.4:66280962-66280981 | None:intergenic | 40.0% |
| AAGCCTTAAAGCTGTATGGC+CGG | + | chr3.4:66282279-66282298 | MS.gene05022:CDS | 45.0% | |
| AAGGTTCGAGGTTGAAACCT+CGG | + | chr3.4:66280942-66280961 | MS.gene05022:intron | 45.0% | |
| ACCCAACACGCACTTAACAT+AGG | + | chr3.4:66281585-66281604 | MS.gene05022:intron | 45.0% | |
| AGCCTATGTTAAGTGCGTGT+TGG | - | chr3.4:66281590-66281609 | None:intergenic | 45.0% | |
| ATCGGATGAACCAAGGCTTT+CGG | - | chr3.4:66282914-66282933 | None:intergenic | 45.0% | |
| CAGCTACATTTCCTACTGCA+GGG | - | chr3.4:66282018-66282037 | None:intergenic | 45.0% | |
| CAGGTCTGAAAACACTTGCT+TGG | - | chr3.4:66282984-66283003 | None:intergenic | 45.0% | |
| CGCGAGTGATTATGCTCTTA+AGG | + | chr3.4:66282084-66282103 | MS.gene05022:CDS | 45.0% | |
| CTAGCGATAAGATCAAGTGC+AGG | - | chr3.4:66283154-66283173 | None:intergenic | 45.0% | |
| GCCTATGTTAAGTGCGTGTT+GGG | - | chr3.4:66281589-66281608 | None:intergenic | 45.0% | |
| GGTTTGCATGCCTCAATTGT+TGG | - | chr3.4:66283303-66283322 | None:intergenic | 45.0% | |
| TCTGAGCATGACTTCGAATC+TGG | - | chr3.4:66282468-66282487 | None:intergenic | 45.0% | |
| ! | CAACTAGCTTGCGAGGATAA+GGG | - | chr3.4:66282771-66282790 | None:intergenic | 45.0% |
| ! | TAAGTGCGTGTTGGGTTTTG+CGG | - | chr3.4:66281581-66281600 | None:intergenic | 45.0% |
| ! | TCAACTAGCTTGCGAGGATA+AGG | - | chr3.4:66282772-66282791 | None:intergenic | 45.0% |
| ! | TGAAGGAGTATGACTGTGCT+TGG | + | chr3.4:66282382-66282401 | MS.gene05022:intron | 45.0% |
| !! | GATGGCGTTTTGAATTCAGC+AGG | - | chr3.4:66283003-66283022 | None:intergenic | 45.0% |
| !! | TTACGTTTTGGTCTAGGAGG+AGG | - | chr3.4:66282739-66282758 | None:intergenic | 45.0% |
| !! | AAAATTATTAAAAAATATGA+AGG | - | chr3.4:66280539-66280558 | None:intergenic | 5.0% |
| !!! | GTTAAAAAAATTATAATTTT+TGG | + | chr3.4:66280681-66280700 | MS.gene05022:intron | 5.0% |
| ACACTTGGTTCCGAAAGCCT+TGG | + | chr3.4:66282901-66282920 | MS.gene05022:CDS | 50.0% | |
| AGCCTAGCTTCTTCCTCTGA+TGG | - | chr3.4:66283021-66283040 | None:intergenic | 50.0% | |
| AGCCTTAAAGCTGTATGGCC+GGG | + | chr3.4:66282280-66282299 | MS.gene05022:CDS | 50.0% | |
| CCAGCTACATTTCCTACTGC+AGG | - | chr3.4:66282019-66282038 | None:intergenic | 50.0% | |
| CCTGCAGTAGGAAATGTAGC+TGG | + | chr3.4:66282016-66282035 | MS.gene05022:CDS | 50.0% | |
| CGCAAGCTAGTTGAGATGGT+CGG | + | chr3.4:66282778-66282797 | MS.gene05022:CDS | 50.0% | |
| CTTTGTGGGCTTAGCTCAGT+TGG | + | chr3.4:66280897-66280916 | MS.gene05022:intron | 50.0% | |
| GTGTCGCGAAGAACCTGATA+TGG | - | chr3.4:66282676-66282695 | None:intergenic | 50.0% | |
| TCCTCGCAAGCTAGTTGAGA+TGG | + | chr3.4:66282774-66282793 | MS.gene05022:CDS | 50.0% | |
| ! | ACCATCTCAACTAGCTTGCG+AGG | - | chr3.4:66282778-66282797 | None:intergenic | 50.0% |
| ! | GGGTGCATAGGCTTACGTTT+TGG | - | chr3.4:66282751-66282770 | None:intergenic | 50.0% |
| ! | TTGCGAGGATAAGGGTGCAT+AGG | - | chr3.4:66282763-66282782 | None:intergenic | 50.0% |
| !! | GGCTTACGTTTTGGTCTAGG+AGG | - | chr3.4:66282742-66282761 | None:intergenic | 50.0% |
| CATACCTTCAATGCGTCGCC+AGG | - | chr3.4:66282306-66282325 | None:intergenic | 55.0% | |
| CGCCATCAGAGGAAGAAGCT+AGG | + | chr3.4:66283016-66283035 | MS.gene05022:CDS | 55.0% | |
| CTGGCGACGCATTGAAGGTA+TGG | + | chr3.4:66282304-66282323 | MS.gene05022:intron | 55.0% | |
| GTGGGCTTAGCTCAGTTGGT+AGG | + | chr3.4:66280901-66280920 | MS.gene05022:intron | 55.0% | |
| TCCAGTGTTAGCCCTGCAGT+AGG | + | chr3.4:66282004-66282023 | MS.gene05022:CDS | 55.0% | |
| TCCTACTGCAGGGCTAACAC+TGG | - | chr3.4:66282008-66282027 | None:intergenic | 55.0% | |
| ! | CGACGCATTGAAGGTATGGC+TGG | + | chr3.4:66282308-66282327 | MS.gene05022:intron | 55.0% |
| GGCCCGGCCATACAGCTTTA+AGG | - | chr3.4:66282285-66282304 | None:intergenic | 60.0% | |
| TAAAGCTGTATGGCCGGGCC+TGG | + | chr3.4:66282285-66282304 | MS.gene05022:CDS | 60.0% | |
| CTTCAATGCGTCGCCAGGCC+CGG | - | chr3.4:66282301-66282320 | None:intergenic | 65.0% | |
| CGGGCCTGGCGACGCATTGA+AGG | + | chr3.4:66282299-66282318 | MS.gene05022:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66280140 | 66283413 | 66280140 | ID=MS.gene05022 |
| chr3.4 | mRNA | 66280140 | 66283413 | 66280140 | ID=MS.gene05022.t1;Parent=MS.gene05022 |
| chr3.4 | exon | 66280140 | 66280151 | 66280140 | ID=MS.gene05022.t1.exon1;Parent=MS.gene05022.t1 |
| chr3.4 | CDS | 66280140 | 66280151 | 66280140 | ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1 |
| chr3.4 | exon | 66281983 | 66282105 | 66281983 | ID=MS.gene05022.t1.exon2;Parent=MS.gene05022.t1 |
| chr3.4 | CDS | 66281983 | 66282105 | 66281983 | ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1 |
| chr3.4 | exon | 66282209 | 66282320 | 66282209 | ID=MS.gene05022.t1.exon3;Parent=MS.gene05022.t1 |
| chr3.4 | CDS | 66282209 | 66282320 | 66282209 | ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1 |
| chr3.4 | exon | 66282440 | 66282501 | 66282440 | ID=MS.gene05022.t1.exon4;Parent=MS.gene05022.t1 |
| chr3.4 | CDS | 66282440 | 66282501 | 66282440 | ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1 |
| chr3.4 | exon | 66282682 | 66283077 | 66282682 | ID=MS.gene05022.t1.exon5;Parent=MS.gene05022.t1 |
| chr3.4 | CDS | 66282682 | 66283077 | 66282682 | ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1 |
| chr3.4 | exon | 66283174 | 66283413 | 66283174 | ID=MS.gene05022.t1.exon6;Parent=MS.gene05022.t1 |
| chr3.4 | CDS | 66283174 | 66283413 | 66283174 | ID=cds.MS.gene05022.t1;Parent=MS.gene05022.t1 |
| Gene Sequence |
| Protein sequence |
