AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050246

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050246.t1 MTR_6g044690 95.230 566 26 1 1 565 1 566 0.0 1090
MS.gene050246.t1 MTR_6g043960 89.087 504 35 1 62 565 1 484 0.0 919
MS.gene050246.t1 MTR_0376s0030 76.690 562 126 3 7 566 7 565 0.0 879
MS.gene050246.t1 MTR_2g054460 82.592 517 38 4 52 566 1 467 0.0 854
MS.gene050246.t1 MTR_1g035420 57.417 573 199 11 5 563 105 646 0.0 632
MS.gene050246.t1 MTR_8g070070 50.082 613 230 12 12 563 160 757 0.0 578
MS.gene050246.t1 MTR_8g070075 48.680 606 242 13 12 563 160 750 0.0 566
MS.gene050246.t1 MTR_8g071030 52.198 546 216 9 55 563 200 737 0.0 563
MS.gene050246.t1 MTR_1g035400 54.215 522 207 9 55 563 63 565 0.0 543
MS.gene050246.t1 MTR_7g088370 37.295 488 264 10 92 563 219 680 1.31e-97 312
MS.gene050246.t1 MTR_8g042750 35.893 521 288 15 60 563 167 658 5.84e-91 294
MS.gene050246.t1 MTR_3g011440 34.151 530 289 13 60 564 141 635 4.33e-89 288
MS.gene050246.t1 MTR_5g013420 37.838 518 266 17 60 561 581 1058 5.15e-89 297
MS.gene050246.t1 MTR_5g013420 37.838 518 266 17 60 561 581 1058 5.95e-89 297
MS.gene050246.t1 MTR_4g010830 38.511 470 245 14 109 561 507 949 1.46e-88 294
MS.gene050246.t1 MTR_6g061270 34.623 491 262 15 109 562 196 664 1.40e-79 264
MS.gene050246.t1 MTR_4g010550 35.908 479 236 17 98 561 11 433 2.55e-79 257
MS.gene050246.t1 MTR_7g084090 35.070 499 270 16 99 562 248 727 2.23e-78 262
MS.gene050246.t1 MTR_6g061200 31.607 560 303 18 34 562 125 635 1.01e-73 248
MS.gene050246.t1 MTR_6g044000 86.667 120 16 0 62 181 1 120 1.10e-64 209
MS.gene050246.t1 MTR_6g044000 100.000 56 0 0 511 566 117 172 3.64e-33 125
MS.gene050246.t1 MTR_7g084090 37.337 383 191 14 99 451 248 611 9.48e-64 221
MS.gene050246.t1 MTR_1g048950 32.671 453 251 11 130 561 88 507 3.15e-50 182
MS.gene050246.t1 MTR_7g445710 29.424 469 242 14 114 561 112 512 9.77e-48 175
MS.gene050246.t1 MTR_7g445530 29.211 469 243 14 114 561 112 512 2.10e-47 173
MS.gene050246.t1 MTR_7g450730 29.663 445 231 14 117 561 112 474 9.19e-44 163
MS.gene050246.t1 MTR_7g052480 29.206 315 195 13 263 562 225 526 5.86e-31 127
MS.gene050246.t1 MTR_7g445600 31.788 151 65 2 411 561 243 355 2.97e-20 92.8
MS.gene050246.t1 MTR_7g445600 33.058 121 75 3 114 233 108 223 1.46e-11 66.6
MS.gene050246.t1 MTR_8g078505 29.319 191 121 2 374 564 342 518 2.87e-19 91.7
MS.gene050246.t1 MTR_5g018850 26.923 286 165 8 305 558 1207 1480 1.01e-18 90.9
MS.gene050246.t1 MTR_4g132610 28.723 188 117 4 380 564 853 1026 3.41e-17 85.9
MS.gene050246.t1 MTR_8g078490 29.255 188 116 4 380 564 1059 1232 3.54e-17 85.9
MS.gene050246.t1 MTR_1g069570 28.409 176 111 4 391 564 559 721 5.30e-17 85.1
MS.gene050246.t1 MTR_5g098680 32.484 157 86 4 137 280 267 416 2.56e-14 76.6
MS.gene050246.t1 MTR_1g069570 31.298 131 76 3 391 520 559 676 3.03e-13 73.2
MS.gene050246.t1 MTR_4g131630 61.538 52 17 1 508 559 1 49 2.18e-12 62.4
MS.gene050246.t1 MTR_8g102580 30.573 157 89 4 137 280 261 410 5.39e-12 68.9
MS.gene050246.t1 MTR_7g445810 29.730 148 95 3 117 261 128 269 4.86e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050246.t1 AT4G13460 49.905 525 219 11 56 563 141 638 3.21e-170 498
MS.gene050246.t1 AT4G13460 49.905 525 219 11 56 563 141 638 3.21e-170 498
MS.gene050246.t1 AT2G33290 48.496 532 237 11 45 563 132 639 6.62e-167 489
MS.gene050246.t1 AT2G33290 48.496 532 237 11 45 563 132 639 6.62e-167 489
MS.gene050246.t1 AT2G33290 48.496 532 237 11 45 563 132 639 6.62e-167 489
MS.gene050246.t1 AT2G33290 48.496 532 237 11 45 563 132 639 6.62e-167 489
MS.gene050246.t1 AT2G22740 34.866 522 288 14 60 561 270 759 1.69e-87 287
MS.gene050246.t1 AT2G22740 34.866 522 288 14 60 561 270 759 1.69e-87 287
MS.gene050246.t1 AT2G35160 36.344 465 232 13 114 561 310 727 2.78e-83 275
MS.gene050246.t1 AT5G04940 34.749 518 292 14 60 563 155 640 4.87e-83 273
MS.gene050246.t1 AT5G04940 34.749 518 292 14 60 563 155 640 4.87e-83 273
MS.gene050246.t1 AT1G73100 36.243 527 288 17 61 563 137 639 5.08e-83 273
MS.gene050246.t1 AT2G35160 36.344 465 232 13 114 561 346 763 5.09e-83 276
MS.gene050246.t1 AT2G35160 36.344 465 232 13 114 561 346 763 5.09e-83 276
MS.gene050246.t1 AT2G35160 36.344 465 232 13 114 561 346 763 5.09e-83 276
MS.gene050246.t1 AT2G35160 36.344 465 232 13 114 561 346 763 5.09e-83 276
MS.gene050246.t1 AT5G13960 34.917 484 270 19 109 562 126 594 4.55e-76 253
MS.gene050246.t1 AT5G13960 34.989 463 257 18 130 562 12 460 1.15e-75 248
MS.gene050246.t1 AT1G17770 31.065 573 361 16 11 563 103 661 1.21e-73 248
MS.gene050246.t1 AT2G24740 33.636 550 303 17 29 563 222 724 1.09e-71 244
MS.gene050246.t1 AT5G47150 35.741 263 130 9 26 279 92 324 2.37e-33 130
MS.gene050246.t1 AT2G23740 29.210 291 150 10 305 562 1089 1356 3.05e-25 111
MS.gene050246.t1 AT2G23740 29.210 291 150 10 305 562 1089 1356 3.05e-25 111
MS.gene050246.t1 AT2G23740 29.210 291 150 10 305 562 1089 1356 3.05e-25 111
MS.gene050246.t1 AT2G23740 29.210 291 150 10 305 562 1082 1349 3.33e-25 111
MS.gene050246.t1 AT5G47160 37.838 185 95 7 102 276 234 408 9.60e-24 104
MS.gene050246.t1 AT5G47160 37.838 185 95 7 102 276 234 408 9.60e-24 104
MS.gene050246.t1 AT5G47160 37.838 185 95 7 102 276 234 408 9.60e-24 104
MS.gene050246.t1 AT2G23740 30.120 249 118 10 305 520 1089 1314 2.93e-20 95.9
MS.gene050246.t1 AT2G23740 30.120 249 118 10 305 520 1089 1314 2.93e-20 95.9
MS.gene050246.t1 AT3G03750 27.636 275 159 7 309 562 68 323 1.92e-18 87.4
MS.gene050246.t1 AT2G05900 37.572 173 92 9 174 337 26 191 1.77e-17 84.0
MS.gene050246.t1 AT1G57820 30.233 172 90 6 132 280 263 427 5.77e-13 72.0
MS.gene050246.t1 AT1G57820 30.233 172 90 6 132 280 263 427 5.77e-13 72.0
MS.gene050246.t1 AT1G57820 30.769 169 90 7 132 280 263 424 1.19e-12 71.2
MS.gene050246.t1 AT5G39550 30.233 172 90 7 132 280 248 412 1.31e-11 67.8

Find 132 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTTGATCATGGTAAT+TGG 0.179510 7.1:+52981384 MS.gene050246:CDS
GATTCGTGTGTCGGGTTTGC+TGG 0.262976 7.1:+52980008 MS.gene050246:CDS
TGGTTTGAGAAAGGTATATC+TGG 0.271703 7.1:+52980564 MS.gene050246:CDS
ACATAGGATTATCACATAAT+TGG 0.283098 7.1:-52980680 None:intergenic
TTGGATGTTTCCCCATCTTA+TGG 0.286358 7.1:+52981403 MS.gene050246:CDS
AGGATCATACTACCCATCTT+AGG 0.317543 7.1:-52980630 None:intergenic
TTGGCCTCTCTTAAGCATAT+TGG 0.319702 7.1:-52980661 None:intergenic
TGGAACGATGGTGCGCAATA+TGG 0.333468 7.1:-52979818 None:intergenic
AGAAACCGTGTGACACAAAA+AGG 0.338747 7.1:+52981014 MS.gene050246:CDS
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 7.1:+52980192 MS.gene050246:CDS
CATGCTAGTATGAGTTCTAA+TGG 0.360661 7.1:+52980291 MS.gene050246:CDS
ATGAAACTAGTTGGGGAGTT+AGG 0.362684 7.1:+52981069 MS.gene050246:CDS
TATTATTCACTTCTTCTGTC+TGG 0.364776 7.1:-52980086 None:intergenic
CAGAAGAAGTGAATAATAGT+AGG 0.376433 7.1:+52980091 MS.gene050246:CDS
ACTAATTGAACAAACACATT+TGG 0.377806 7.1:-52981362 None:intergenic
TAGATCTAATGAAACTAGTT+GGG 0.379002 7.1:+52981061 MS.gene050246:CDS
ATAAAAGTTCCAGCTAGAAT+AGG 0.380021 7.1:-52981101 None:intergenic
AACATTGGAAATGCCGCCTT+CGG 0.382051 7.1:-52980804 None:intergenic
TCCAATGGGAAGGAGAATAT+TGG 0.382212 7.1:+52980723 MS.gene050246:CDS
ATATTGCGCACCATCGTTCC+AGG 0.387023 7.1:+52979820 MS.gene050246:CDS
TAAGCATATTGGCTTCCTTA+AGG 0.394112 7.1:-52980650 None:intergenic
TTCCTCATCGTCATACTTTG+TGG 0.395272 7.1:-52980834 None:intergenic
TGCGAAGGACAACTACAAAA+AGG 0.399229 7.1:-52980987 None:intergenic
TAGCAGCAATCAAGTCATTT+CGG 0.407660 7.1:-52980116 None:intergenic
AAATCTAAGCAGAAGATTAG+AGG 0.410333 7.1:+52979895 MS.gene050246:CDS
CAATTAGTTCTCTTTGATCA+TGG 0.411850 7.1:+52981377 MS.gene050246:CDS
TTTATAAGTTTATGTTATCA+AGG 0.412998 7.1:+52980595 MS.gene050246:CDS
GTTTGATTCGATTCGTGTGT+CGG 0.415574 7.1:+52979999 MS.gene050246:CDS
GAATAGGTCTACTCAAGAAT+GGG 0.418852 7.1:+52981223 MS.gene050246:CDS
TAGTTGGGGAGTTAGGTCTT+TGG 0.420703 7.1:+52981076 MS.gene050246:CDS
GAGAAAGGTATATCTGGGTT+TGG 0.420997 7.1:+52980570 MS.gene050246:CDS
CTTGATCATGGGGTAGAAGC+TGG 0.421865 7.1:+52981467 MS.gene050246:CDS
TAAAAGTTCCAGCTAGAATA+GGG 0.427435 7.1:-52981100 None:intergenic
GTGCGCAATATGGAAGGGTT+TGG 0.428940 7.1:-52979808 None:intergenic
GAACAAACACATTTGGAGTT+GGG 0.430179 7.1:-52981355 None:intergenic
CCATTGCAAATACCATAAGA+TGG 0.432457 7.1:-52981415 None:intergenic
AAAATCATTGGTCCAGTTCC+TGG 0.434098 7.1:+52980180 MS.gene050246:CDS
ACATTGGAAATGCCGCCTTC+GGG 0.434321 7.1:-52980803 None:intergenic
GTCCGTATCGTGAGATGGTC+CGG 0.436727 7.1:+52979962 MS.gene050246:CDS
TGAATAGGTCTACTCAAGAA+TGG 0.436832 7.1:+52981222 MS.gene050246:CDS
TGTATAAGATAAGTGAATGT+TGG 0.437441 7.1:+52980544 MS.gene050246:CDS
GGTTCAAGGTCAACCTAAGA+TGG 0.443665 7.1:+52980617 MS.gene050246:CDS
CAAACAAAATTCTTGTTCTC+CGG 0.445353 7.1:-52979981 None:intergenic
TTAGATCTAATGAAACTAGT+TGG 0.450265 7.1:+52981060 MS.gene050246:CDS
TGGTACTTCTACTACTAGTA+AGG 0.451010 7.1:+52980503 MS.gene050246:CDS
GAGTGTTCTGAATGCGTTGA+TGG 0.451024 7.1:+52980873 MS.gene050246:CDS
TGCAATATGAGATTGATGTC+AGG 0.456152 7.1:+52980454 MS.gene050246:CDS
GATGGGTAGTATGATCCTTA+AGG 0.457082 7.1:+52980635 MS.gene050246:CDS
CCATCTTATGGTATTTGCAA+TGG 0.459327 7.1:+52981415 MS.gene050246:CDS
TTTGATTCGATTCGTGTGTC+GGG 0.459511 7.1:+52980000 MS.gene050246:CDS
ACTAGTGTGGTTGTGTCTGA+TGG 0.461191 7.1:+52980327 MS.gene050246:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 7.1:-52980192 None:intergenic
TGAACAAACACATTTGGAGT+TGG 0.468046 7.1:-52981356 None:intergenic
CTTTCTGATGATATTTCCAA+TGG 0.469201 7.1:+52980708 MS.gene050246:CDS
CATTGCAAATACCATAAGAT+GGG 0.474185 7.1:-52981414 None:intergenic
TATCATGATGTGAAAATCAT+TGG 0.477666 7.1:+52980168 MS.gene050246:CDS
AGAAGTGAAATGTGTGTGAT+TGG 0.479419 7.1:+52980231 MS.gene050246:CDS
GGTTTGAGAAAGGTATATCT+GGG 0.480974 7.1:+52980565 MS.gene050246:CDS
ACCAATATTCTCCTTCCCAT+TGG 0.482976 7.1:-52980724 None:intergenic
AGTGAATGTTGGTTTGAGAA+AGG 0.484772 7.1:+52980555 MS.gene050246:CDS
CTCGTCGGGACCTGGAACGA+TGG 0.490656 7.1:-52979830 None:intergenic
CTCCCTAGTCAAAACAAGTC+CGG 0.496317 7.1:-52981135 None:intergenic
AAAAGGTATTAAATATAGGT+TGG 0.507633 7.1:+52981031 MS.gene050246:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 7.1:-52981449 None:intergenic
ACTGCCCCTTATAGTAAAAG+TGG 0.510662 7.1:+52980924 MS.gene050246:CDS
TCTTTGGACCCTATTCTAGC+TGG 0.516120 7.1:+52981092 MS.gene050246:CDS
CACAACCACACTAGTAGCAA+TGG 0.516405 7.1:-52980319 None:intergenic
TTTATGTTATCAAGGGTTCA+AGG 0.516545 7.1:+52980603 MS.gene050246:CDS
TGTGTTTCTTCAATCATGAA+TGG 0.517110 7.1:+52980897 MS.gene050246:CDS
AAATCTAAAGTAGGATATGC+GGG 0.520737 7.1:-52981281 None:intergenic
TACGACAGCAACACTCTGGC+GGG 0.520756 7.1:+52979862 MS.gene050246:CDS
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 7.1:+52981455 MS.gene050246:CDS
AGAGTTATGTTCACCATCCA+TGG 0.526426 7.1:-52981174 None:intergenic
TGATGATATTTCCAATGGGA+AGG 0.528993 7.1:+52980713 MS.gene050246:CDS
GAGAGCTTAGTCTTGATCAT+GGG 0.530152 7.1:+52981456 MS.gene050246:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 7.1:-52981446 None:intergenic
AATCTAAGCAGAAGATTAGA+GGG 0.532514 7.1:+52979896 MS.gene050246:CDS
TACATGGTCAACCACAAGCT+GGG 0.533174 7.1:+52980256 MS.gene050246:CDS
ATTGATGTCAGGGTTATTCG+AGG 0.539804 7.1:+52980465 MS.gene050246:CDS
ACAACCACACTAGTAGCAAT+GGG 0.546031 7.1:-52980318 None:intergenic
TATGAAGCAGGATCAGAAGT+TGG 0.550833 7.1:+52980401 MS.gene050246:CDS
GCTACTTTGATGAACGATCA+TGG 0.552325 7.1:+52980135 MS.gene050246:CDS
AGAAGAAGTGAATAATAGTA+GGG 0.557866 7.1:+52980092 MS.gene050246:CDS
TCCAATGCAAAATCTAAAGT+AGG 0.560604 7.1:-52981290 None:intergenic
TGGCCATGGTGATATGAAGC+AGG 0.562913 7.1:+52980389 MS.gene050246:CDS
ACGATGGTGCGCAATATGGA+AGG 0.563091 7.1:-52979814 None:intergenic
TTGATCATGGGGTAGAAGCT+GGG 0.563836 7.1:+52981468 MS.gene050246:CDS
ATGTGTGTGATTGGTTTACA+TGG 0.563933 7.1:+52980240 MS.gene050246:CDS
CTCCGGACCATCTCACGATA+CGG 0.564668 7.1:-52979964 None:intergenic
TTACATGGTCAACCACAAGC+TGG 0.564688 7.1:+52980255 MS.gene050246:CDS
TGGGCTATGACTAATGTAGC+TGG 0.564927 7.1:-52981336 None:intergenic
TCATCAGAAAGGACATACAT+AGG 0.567324 7.1:-52980696 None:intergenic
TCACCGTCCGTATCGTGAGA+TGG 0.569169 7.1:+52979957 MS.gene050246:CDS
CTTTGTGGAAGCAAGAACAT+TGG 0.569590 7.1:-52980819 None:intergenic
CATTGGAAATATCATCAGAA+AGG 0.571115 7.1:-52980707 None:intergenic
GGAACGAGGCAACCTTGCTA+TGG 0.574021 7.1:+52980422 MS.gene050246:CDS
CCACACTAGTAGCAATGGGC+TGG 0.574305 7.1:-52980314 None:intergenic
TTTCTGATGATATTTCCAAT+GGG 0.576995 7.1:+52980709 MS.gene050246:CDS
GGAGACTCTATTATCTACTC+TGG 0.577576 7.1:+52980369 MS.gene050246:CDS
GCAATATGAGATTGATGTCA+GGG 0.582106 7.1:+52980455 MS.gene050246:CDS
GGATATAATGATGATGATCA+AGG 0.586899 7.1:+52980348 MS.gene050246:CDS
AAATTACGACAGCAACACTC+TGG 0.588133 7.1:+52979858 MS.gene050246:CDS
TTATAAGTTTATGTTATCAA+GGG 0.591362 7.1:+52980596 MS.gene050246:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 7.1:-52981445 None:intergenic
GCATACTTGTCACCATAGCA+AGG 0.603748 7.1:-52980434 None:intergenic
GGGAGATACTCAAATTGCAT+AGG 0.607274 7.1:-52980783 None:intergenic
AAAATCTAAAGTAGGATATG+CGG 0.609459 7.1:-52981282 None:intergenic
GTTCAAGGTCAACCTAAGAT+GGG 0.609539 7.1:+52980618 MS.gene050246:CDS
GAAGATTAGAGGGCAGAACA+AGG 0.612660 7.1:+52979906 MS.gene050246:CDS
GGAGCTTGTTCACACTGCGA+TGG 0.614223 7.1:+52979927 MS.gene050246:CDS
AGATCTAATGAAACTAGTTG+GGG 0.616648 7.1:+52981062 MS.gene050246:CDS
CTGCCCCTTATAGTAAAAGT+GGG 0.618231 7.1:+52980925 MS.gene050246:CDS
TCTATTATCTACTCTGGCCA+TGG 0.620402 7.1:+52980375 MS.gene050246:CDS
TTACGACAGCAACACTCTGG+CGG 0.621013 7.1:+52979861 MS.gene050246:CDS
ACACGGTTTCTGCAATGCGA+AGG 0.638201 7.1:-52981002 None:intergenic
AGAGCTTAGTCTTGATCATG+GGG 0.638779 7.1:+52981457 MS.gene050246:CDS
CATTGGATGTATCAACGATG+AGG 0.644772 7.1:+52981306 MS.gene050246:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 7.1:-52980267 None:intergenic
ATTGCAAATACCATAAGATG+GGG 0.649831 7.1:-52981413 None:intergenic
CCAGCCCATTGCTACTAGTG+TGG 0.654306 7.1:+52980314 MS.gene050246:CDS
CGATGGTGCGCAATATGGAA+GGG 0.656778 7.1:-52979813 None:intergenic
AATAGGTCTACTCAAGAATG+GGG 0.657058 7.1:+52981224 MS.gene050246:CDS
GAAGCCAATATGCTTAAGAG+AGG 0.661393 7.1:+52980657 MS.gene050246:CDS
GGAAGGAGAATATTGGTGTG+AGG 0.669233 7.1:+52980730 MS.gene050246:CDS
ATATCACCAATACAAACACC+AGG 0.674752 7.1:-52980198 None:intergenic
GCAATTTGAGTATCTCCCGA+AGG 0.676490 7.1:+52980788 MS.gene050246:CDS
CAGGATCAGAAGTTGGAACG+AGG 0.676511 7.1:+52980408 MS.gene050246:CDS
GATCCTGCTTCATATCACCA+TGG 0.685147 7.1:-52980392 None:intergenic
GGACCATCTCACGATACGGA+CGG 0.685403 7.1:-52979960 None:intergenic
TTCCACAAAGTATGACGATG+AGG 0.687825 7.1:+52980832 MS.gene050246:CDS
ATTTGAGTATCTCCCGAAGG+CGG 0.692509 7.1:+52980791 MS.gene050246:CDS
AGGTCGTTGATTTATGAATG+CGG 0.693955 7.1:+52980963 MS.gene050246:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTTATGTTATCAA+GGG + chr7.1:52980596-52980615 MS.gene050246:CDS 15.0%
!! TTTATAAGTTTATGTTATCA+AGG + chr7.1:52980595-52980614 MS.gene050246:CDS 15.0%
!!! AAAAGGTATTAAATATAGGT+TGG + chr7.1:52981031-52981050 MS.gene050246:CDS 20.0%
!!! CACAAAAAGGTATTAAATAT+AGG + chr7.1:52981027-52981046 MS.gene050246:CDS 20.0%
! ACATAGGATTATCACATAAT+TGG - chr7.1:52980683-52980702 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+TGG - chr7.1:52981365-52981384 None:intergenic 25.0%
! AGAAGAAGTGAATAATAGTA+GGG + chr7.1:52980092-52980111 MS.gene050246:CDS 25.0%
! TAGATCTAATGAAACTAGTT+GGG + chr7.1:52981061-52981080 MS.gene050246:CDS 25.0%
! TATCATGATGTGAAAATCAT+TGG + chr7.1:52980168-52980187 MS.gene050246:CDS 25.0%
! TGTATAAGATAAGTGAATGT+TGG + chr7.1:52980544-52980563 MS.gene050246:CDS 25.0%
! TTAGATCTAATGAAACTAGT+TGG + chr7.1:52981060-52981079 MS.gene050246:CDS 25.0%
! TTTCTGATGATATTTCCAAT+GGG + chr7.1:52980709-52980728 MS.gene050246:CDS 25.0%
!! AAAATCTAAAGTAGGATATG+CGG - chr7.1:52981285-52981304 None:intergenic 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG + chr7.1:52980519-52980538 MS.gene050246:CDS 25.0%
!!! ATCCAAATCGATTTTTGAAT+AGG + chr7.1:52981207-52981226 MS.gene050246:CDS 25.0%
AAATCTAAGCAGAAGATTAG+AGG + chr7.1:52979895-52979914 MS.gene050246:CDS 30.0%
AATCTAAGCAGAAGATTAGA+GGG + chr7.1:52979896-52979915 MS.gene050246:CDS 30.0%
AGATCTAATGAAACTAGTTG+GGG + chr7.1:52981062-52981081 MS.gene050246:CDS 30.0%
ATAAAAGTTCCAGCTAGAAT+AGG - chr7.1:52981104-52981123 None:intergenic 30.0%
ATTGCAAATACCATAAGATG+GGG - chr7.1:52981416-52981435 None:intergenic 30.0%
CAAACAAAATTCTTGTTCTC+CGG - chr7.1:52979984-52980003 None:intergenic 30.0%
CAGAAGAAGTGAATAATAGT+AGG + chr7.1:52980091-52980110 MS.gene050246:CDS 30.0%
CATTGCAAATACCATAAGAT+GGG - chr7.1:52981417-52981436 None:intergenic 30.0%
CATTGGAAATATCATCAGAA+AGG - chr7.1:52980710-52980729 None:intergenic 30.0%
CTTTCTGATGATATTTCCAA+TGG + chr7.1:52980708-52980727 MS.gene050246:CDS 30.0%
GACCTATTCAAAAATCGATT+TGG - chr7.1:52981212-52981231 None:intergenic 30.0%
TAAAAGTTCCAGCTAGAATA+GGG - chr7.1:52981103-52981122 None:intergenic 30.0%
TATTATTCACTTCTTCTGTC+TGG - chr7.1:52980089-52980108 None:intergenic 30.0%
TGTGTTTCTTCAATCATGAA+TGG + chr7.1:52980897-52980916 MS.gene050246:CDS 30.0%
TTCTCTTTGATCATGGTAAT+TGG + chr7.1:52981384-52981403 MS.gene050246:CDS 30.0%
TTTATGTTATCAAGGGTTCA+AGG + chr7.1:52980603-52980622 MS.gene050246:CDS 30.0%
! AAAAGTGGGATTCTTTTGAA+AGG + chr7.1:52980939-52980958 MS.gene050246:CDS 30.0%
! AAATCTAAAGTAGGATATGC+GGG - chr7.1:52981284-52981303 None:intergenic 30.0%
! ACTTTTATATGTGAGTTCAC+CGG + chr7.1:52981116-52981135 MS.gene050246:CDS 30.0%
! CAATTAGTTCTCTTTGATCA+TGG + chr7.1:52981377-52981396 MS.gene050246:CDS 30.0%
! GGATATAATGATGATGATCA+AGG + chr7.1:52980348-52980367 MS.gene050246:CDS 30.0%
! TAATACCTTTTTGTGTCACA+CGG - chr7.1:52981022-52981041 None:intergenic 30.0%
! TCCAATGCAAAATCTAAAGT+AGG - chr7.1:52981293-52981312 None:intergenic 30.0%
! TCCTACTTTAGATTTTGCAT+TGG + chr7.1:52981289-52981308 MS.gene050246:CDS 30.0%
!! AAAGTGGGATTCTTTTGAAA+GGG + chr7.1:52980940-52980959 MS.gene050246:CDS 30.0%
!! AATCCCACTTTTACTATAAG+GGG - chr7.1:52980931-52980950 None:intergenic 30.0%
!! AGAATCCCACTTTTACTATA+AGG - chr7.1:52980933-52980952 None:intergenic 30.0%
!! GAATCCCACTTTTACTATAA+GGG - chr7.1:52980932-52980951 None:intergenic 30.0%
AAATAATCAATCCCAGCTTG+TGG - chr7.1:52980270-52980289 None:intergenic 35.0%
AATAGGTCTACTCAAGAATG+GGG + chr7.1:52981224-52981243 MS.gene050246:CDS 35.0%
AGAAGTGAAATGTGTGTGAT+TGG + chr7.1:52980231-52980250 MS.gene050246:CDS 35.0%
ATATCACCAATACAAACACC+AGG - chr7.1:52980201-52980220 None:intergenic 35.0%
CCATCTTATGGTATTTGCAA+TGG + chr7.1:52981415-52981434 MS.gene050246:CDS 35.0%
CCATTGCAAATACCATAAGA+TGG - chr7.1:52981418-52981437 None:intergenic 35.0%
GAATAGGTCTACTCAAGAAT+GGG + chr7.1:52981223-52981242 MS.gene050246:CDS 35.0%
GCAATATGAGATTGATGTCA+GGG + chr7.1:52980455-52980474 MS.gene050246:CDS 35.0%
TAGCAGCAATCAAGTCATTT+CGG - chr7.1:52980119-52980138 None:intergenic 35.0%
TCATCAGAAAGGACATACAT+AGG - chr7.1:52980699-52980718 None:intergenic 35.0%
TGAATAGGTCTACTCAAGAA+TGG + chr7.1:52981222-52981241 MS.gene050246:CDS 35.0%
TGATGATATTTCCAATGGGA+AGG + chr7.1:52980713-52980732 MS.gene050246:CDS 35.0%
TGCAATATGAGATTGATGTC+AGG + chr7.1:52980454-52980473 MS.gene050246:CDS 35.0%
TGGTACTTCTACTACTAGTA+AGG + chr7.1:52980503-52980522 MS.gene050246:CDS 35.0%
! CATGCTAGTATGAGTTCTAA+TGG + chr7.1:52980291-52980310 MS.gene050246:CDS 35.0%
! GAACAAACACATTTGGAGTT+GGG - chr7.1:52981358-52981377 None:intergenic 35.0%
! GGTTTGAGAAAGGTATATCT+GGG + chr7.1:52980565-52980584 MS.gene050246:CDS 35.0%
! GTCGTAATTTTGTAACTCGT+CGG - chr7.1:52979848-52979867 None:intergenic 35.0%
! TCGTAATTTTGTAACTCGTC+GGG - chr7.1:52979847-52979866 None:intergenic 35.0%
! TGAACAAACACATTTGGAGT+TGG - chr7.1:52981359-52981378 None:intergenic 35.0%
! TGGTTTGAGAAAGGTATATC+TGG + chr7.1:52980564-52980583 MS.gene050246:CDS 35.0%
!! AGGTCGTTGATTTATGAATG+CGG + chr7.1:52980963-52980982 MS.gene050246:CDS 35.0%
!! AGTGAATGTTGGTTTGAGAA+AGG + chr7.1:52980555-52980574 MS.gene050246:CDS 35.0%
!! ATGTGTGTGATTGGTTTACA+TGG + chr7.1:52980240-52980259 MS.gene050246:CDS 35.0%
!! TAAGCATATTGGCTTCCTTA+AGG - chr7.1:52980653-52980672 None:intergenic 35.0%
AAAATCATTGGTCCAGTTCC+TGG + chr7.1:52980180-52980199 MS.gene050246:CDS 40.0%
AAATTACGACAGCAACACTC+TGG + chr7.1:52979858-52979877 MS.gene050246:CDS 40.0%
ACAACCACACTAGTAGCAAT+GGG - chr7.1:52980321-52980340 None:intergenic 40.0%
ACCAATATTCTCCTTCCCAT+TGG - chr7.1:52980727-52980746 None:intergenic 40.0%
ACTGCCCCTTATAGTAAAAG+TGG + chr7.1:52980924-52980943 MS.gene050246:CDS 40.0%
AGAAACCGTGTGACACAAAA+AGG + chr7.1:52981014-52981033 MS.gene050246:CDS 40.0%
AGAGTTATGTTCACCATCCA+TGG - chr7.1:52981177-52981196 None:intergenic 40.0%
AGGATCATACTACCCATCTT+AGG - chr7.1:52980633-52980652 None:intergenic 40.0%
ATGAAACTAGTTGGGGAGTT+AGG + chr7.1:52981069-52981088 MS.gene050246:CDS 40.0%
ATTGATGTCAGGGTTATTCG+AGG + chr7.1:52980465-52980484 MS.gene050246:CDS 40.0%
CATTGGATGTATCAACGATG+AGG + chr7.1:52981306-52981325 MS.gene050246:CDS 40.0%
CTGCCCCTTATAGTAAAAGT+GGG + chr7.1:52980925-52980944 MS.gene050246:CDS 40.0%
CTTTGTGGAAGCAAGAACAT+TGG - chr7.1:52980822-52980841 None:intergenic 40.0%
GAAGCCAATATGCTTAAGAG+AGG + chr7.1:52980657-52980676 MS.gene050246:CDS 40.0%
GATGGGTAGTATGATCCTTA+AGG + chr7.1:52980635-52980654 MS.gene050246:CDS 40.0%
GGAGACTCTATTATCTACTC+TGG + chr7.1:52980369-52980388 MS.gene050246:CDS 40.0%
GGGAGATACTCAAATTGCAT+AGG - chr7.1:52980786-52980805 None:intergenic 40.0%
GTTCAAGGTCAACCTAAGAT+GGG + chr7.1:52980618-52980637 MS.gene050246:CDS 40.0%
TATGAAGCAGGATCAGAAGT+TGG + chr7.1:52980401-52980420 MS.gene050246:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG - chr7.1:52981452-52981471 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+TGG + chr7.1:52980723-52980742 MS.gene050246:CDS 40.0%
TCTATTATCTACTCTGGCCA+TGG + chr7.1:52980375-52980394 MS.gene050246:CDS 40.0%
TGCGAAGGACAACTACAAAA+AGG - chr7.1:52980990-52981009 None:intergenic 40.0%
TTCCACAAAGTATGACGATG+AGG + chr7.1:52980832-52980851 MS.gene050246:CDS 40.0%
TTCCTCATCGTCATACTTTG+TGG - chr7.1:52980837-52980856 None:intergenic 40.0%
TTGGATGTTTCCCCATCTTA+TGG + chr7.1:52981403-52981422 MS.gene050246:CDS 40.0%
TTGGCCTCTCTTAAGCATAT+TGG - chr7.1:52980664-52980683 None:intergenic 40.0%
! ATTCGAGGTTTTCGGTATGA+AGG + chr7.1:52980480-52980499 MS.gene050246:CDS 40.0%
! GAGAAAGGTATATCTGGGTT+TGG + chr7.1:52980570-52980589 MS.gene050246:CDS 40.0%
! GCTACTTTGATGAACGATCA+TGG + chr7.1:52980135-52980154 MS.gene050246:CDS 40.0%
! GTTTGATTCGATTCGTGTGT+CGG + chr7.1:52979999-52980018 MS.gene050246:CDS 40.0%
! TCAGGGTTATTCGAGGTTTT+CGG + chr7.1:52980472-52980491 MS.gene050246:CDS 40.0%
! TTTGATTCGATTCGTGTGTC+GGG + chr7.1:52980000-52980019 MS.gene050246:CDS 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG + chr7.1:52981455-52981474 MS.gene050246:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG + chr7.1:52981457-52981476 MS.gene050246:CDS 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG + chr7.1:52981456-52981475 MS.gene050246:CDS 40.0%
!! GCAAGCAGAAATTTTGACCA+TGG + chr7.1:52981157-52981176 MS.gene050246:CDS 40.0%
!! GCAGAAATTTTGACCATGGA+TGG + chr7.1:52981161-52981180 MS.gene050246:CDS 40.0%
AACATTGGAAATGCCGCCTT+CGG - chr7.1:52980807-52980826 None:intergenic 45.0%
ACTAGTGTGGTTGTGTCTGA+TGG + chr7.1:52980327-52980346 MS.gene050246:CDS 45.0%
AGACTAAGCTCTCTCATTGG+AGG - chr7.1:52981449-52981468 None:intergenic 45.0%
ATTTGAGTATCTCCCGAAGG+CGG + chr7.1:52980791-52980810 MS.gene050246:CDS 45.0%
CACAACCACACTAGTAGCAA+TGG - chr7.1:52980322-52980341 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG - chr7.1:52980195-52980214 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG + chr7.1:52980192-52980211 MS.gene050246:CDS 45.0%
CTCCCTAGTCAAAACAAGTC+CGG - chr7.1:52981138-52981157 None:intergenic 45.0%
GAAGATTAGAGGGCAGAACA+AGG + chr7.1:52979906-52979925 MS.gene050246:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG - chr7.1:52981448-52981467 None:intergenic 45.0%
GATCCTGCTTCATATCACCA+TGG - chr7.1:52980395-52980414 None:intergenic 45.0%
GCAATTTGAGTATCTCCCGA+AGG + chr7.1:52980788-52980807 MS.gene050246:CDS 45.0%
GCATACTTGTCACCATAGCA+AGG - chr7.1:52980437-52980456 None:intergenic 45.0%
GGAAGGAGAATATTGGTGTG+AGG + chr7.1:52980730-52980749 MS.gene050246:CDS 45.0%
GGTTCAAGGTCAACCTAAGA+TGG + chr7.1:52980617-52980636 MS.gene050246:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr7.1:52980256-52980275 MS.gene050246:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG + chr7.1:52981076-52981095 MS.gene050246:CDS 45.0%
TCTTTGGACCCTATTCTAGC+TGG + chr7.1:52981092-52981111 MS.gene050246:CDS 45.0%
TGGGCTATGACTAATGTAGC+TGG - chr7.1:52981339-52981358 None:intergenic 45.0%
TTACATGGTCAACCACAAGC+TGG + chr7.1:52980255-52980274 MS.gene050246:CDS 45.0%
TTGATCATGGGGTAGAAGCT+GGG + chr7.1:52981468-52981487 MS.gene050246:CDS 45.0%
! GAGTGTTCTGAATGCGTTGA+TGG + chr7.1:52980873-52980892 MS.gene050246:CDS 45.0%
!! GTGGGATTCTTTTGAAAGGG+AGG + chr7.1:52980943-52980962 MS.gene050246:CDS 45.0%
!!! CACCGGACTTGTTTTGACTA+GGG + chr7.1:52981133-52981152 MS.gene050246:CDS 45.0%
!!! TCACCGGACTTGTTTTGACT+AGG + chr7.1:52981132-52981151 MS.gene050246:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG - chr7.1:52981005-52981024 None:intergenic 50.0%
ACATTGGAAATGCCGCCTTC+GGG - chr7.1:52980806-52980825 None:intergenic 50.0%
ACGATGGTGCGCAATATGGA+AGG - chr7.1:52979817-52979836 None:intergenic 50.0%
ATATTGCGCACCATCGTTCC+AGG + chr7.1:52979820-52979839 MS.gene050246:CDS 50.0%
CAGGATCAGAAGTTGGAACG+AGG + chr7.1:52980408-52980427 MS.gene050246:CDS 50.0%
CGATGGTGCGCAATATGGAA+GGG - chr7.1:52979816-52979835 None:intergenic 50.0%
CTTGATCATGGGGTAGAAGC+TGG + chr7.1:52981467-52981486 MS.gene050246:CDS 50.0%
GTGCGCAATATGGAAGGGTT+TGG - chr7.1:52979811-52979830 None:intergenic 50.0%
TGGAACGATGGTGCGCAATA+TGG - chr7.1:52979821-52979840 None:intergenic 50.0%
TGGCCATGGTGATATGAAGC+AGG + chr7.1:52980389-52980408 MS.gene050246:CDS 50.0%
TTACGACAGCAACACTCTGG+CGG + chr7.1:52979861-52979880 MS.gene050246:CDS 50.0%
! CGAGGTTTTCGGTATGAAGG+TGG + chr7.1:52980483-52980502 MS.gene050246:CDS 50.0%
! TTTTGTAACTCGTCGGGACC+TGG - chr7.1:52979841-52979860 None:intergenic 50.0%
CCACACTAGTAGCAATGGGC+TGG - chr7.1:52980317-52980336 None:intergenic 55.0%
CCAGCCCATTGCTACTAGTG+TGG + chr7.1:52980314-52980333 MS.gene050246:CDS 55.0%
CTCCGGACCATCTCACGATA+CGG - chr7.1:52979967-52979986 None:intergenic 55.0%
GATTCGTGTGTCGGGTTTGC+TGG + chr7.1:52980008-52980027 MS.gene050246:CDS 55.0%
GGAACGAGGCAACCTTGCTA+TGG + chr7.1:52980422-52980441 MS.gene050246:CDS 55.0%
GGACCATCTCACGATACGGA+CGG - chr7.1:52979963-52979982 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG + chr7.1:52979962-52979981 MS.gene050246:CDS 55.0%
TACGACAGCAACACTCTGGC+GGG + chr7.1:52979862-52979881 MS.gene050246:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG + chr7.1:52979957-52979976 MS.gene050246:CDS 55.0%
! GGAGCTTGTTCACACTGCGA+TGG + chr7.1:52979927-52979946 MS.gene050246:CDS 55.0%
CTCGTCGGGACCTGGAACGA+TGG - chr7.1:52979833-52979852 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 52979793 52981493 52979793 ID=MS.gene050246
chr7.1 mRNA 52979793 52981493 52979793 ID=MS.gene050246.t1;Parent=MS.gene050246
chr7.1 exon 52979793 52981493 52979793 ID=MS.gene050246.t1.exon1;Parent=MS.gene050246.t1
chr7.1 CDS 52979793 52981493 52979793 ID=cds.MS.gene050246.t1;Parent=MS.gene050246.t1
Gene Sequence

>MS.gene050246

ATGAATTTTCAAGATCCAAACCCTTCCATATTGCGCACCATCGTTCCAGGTCCCGACGAGTTACAAAATTACGACAGCAACACTCTGGCGGGAAAAGCTTCAAAATCTAAGCAGAAGATTAGAGGGCAGAACAAGGAGCTTGTTCACACTGCGATGGATGCTGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATTTTGTTTGATTCGATTCGTGTGTCGGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAGAAGTATTTGAAAGCTTCTTCTTTGATAAACCAGACAGAAGAAGTGAATAATAGTAGGGTCCGAAATGACTTGATTGCTGCTACTTTGATGAACGATCATGGTATGTATTTGTATCATGATGTGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCAGCCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACTCTATTATCTACTCTGGCCATGGTGATATGAAGCAGGATCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTCAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAAGTGAATGTTGGTTTGAGAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCAAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCCAATATGCTTAAGAGAGGCCAATTATGTGATAATCCTATGTATGTCCTTTCTGATGATATTTCCAATGGGAAGGAGAATATTGGTGTGAGGCTATATAATGACATTGATAGTGATCTCTATCCTATGCAATTTGAGTATCTCCCGAAGGCGGCATTTCCAATGTTCTTGCTTCCACAAAGTATGACGATGAGGAAAAAGATGAGAGCGATAGAGTGTTCTGAATGCGTTGATGGATGTGTTTCTTCAATCATGAATGGCAACACTGCCCCTTATAGTAAAAGTGGGATTCTTTTGAAAGGGAGGTCGTTGATTTATGAATGCGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAAACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTCTAGCTGGAACTTTTATATGTGAGTTCACCGGACTTGTTTTGACTAGGGAGCAAGCAGAAATTTTGACCATGGATGGTGAACATAACTCTTTGATTATATATCCAAATCGATTTTTGAATAGGTCTACTCAAGAATGGGGAGATTTGTCGATGATTGATGTTAATCATGTGCATCCCGCATATCCTACTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTACATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTTTGATCATGGTAATTGGATGTTTCCCCATCTTATGGTATTTGCAATGGAAAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAAGCTGGGTAG
Protein sequence

>MS.gene050246.t1

MNFQDPNPSILRTIVPGPDELQNYDSNTLAGKASKSKQKIRGQNKELVHTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKKYLKASSLINQTEEVNNSRVRNDLIAATLMNDHGMYLYHDVKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGQPIATSVVVSDGYNDDDQGDSIIYSGHGDMKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKISECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEANMLKRGQLCDNPMYVLSDDISNGKENIGVRLYNDIDSDLYPMQFEYLPKAAFPMFLLPQSMTMRKKMRAIECSECVDGCVSSIMNGNTAPYSKSGILLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSLIIYPNRFLNRSTQEWGDLSMIDVNHVHPAYPTLDFALDVSTMRNVASYISHSPTPNVFVQLVLFDHGNWMFPHLMVFAMENIPPMRELSLDHGVEAG