Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050265.t1 | XP_003622663.1 | 91.7 | 289 | 23 | 1 | 1 | 289 | 28 | 315 | 2.80E-148 | 534.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050265.t1 | Q8L3W1 | 28.3 | 322 | 165 | 7 | 2 | 264 | 22 | 336 | 3.6e-24 | 113.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050265.t1 | G7KVV4 | 91.7 | 289 | 23 | 1 | 1 | 289 | 28 | 315 | 2.0e-148 | 534.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene050265.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050265.t1 | MTR_7g050560 | 91.696 | 289 | 23 | 1 | 1 | 289 | 28 | 315 | 0.0 | 548 |
MS.gene050265.t1 | MTR_7g050590 | 76.271 | 295 | 52 | 5 | 1 | 278 | 1 | 294 | 2.44e-160 | 448 |
MS.gene050265.t1 | MTR_7g050580 | 66.118 | 304 | 72 | 6 | 1 | 289 | 28 | 315 | 1.59e-133 | 381 |
MS.gene050265.t1 | MTR_7g050710 | 65.763 | 295 | 81 | 6 | 2 | 278 | 29 | 321 | 1.28e-130 | 374 |
MS.gene050265.t1 | MTR_3g098790 | 65.986 | 294 | 76 | 6 | 1 | 278 | 28 | 313 | 3.90e-130 | 373 |
MS.gene050265.t1 | MTR_7g050720 | 59.864 | 294 | 89 | 8 | 1 | 266 | 25 | 317 | 5.70e-113 | 329 |
MS.gene050265.t1 | MTR_1g108780 | 33.788 | 293 | 149 | 7 | 2 | 264 | 13 | 290 | 2.33e-47 | 164 |
MS.gene050265.t1 | MTR_1g035460 | 34.114 | 299 | 150 | 7 | 1 | 264 | 1 | 287 | 2.62e-46 | 160 |
MS.gene050265.t1 | MTR_8g103940 | 36.458 | 288 | 147 | 6 | 2 | 264 | 55 | 331 | 5.07e-46 | 162 |
MS.gene050265.t1 | MTR_3g061370 | 34.191 | 272 | 156 | 7 | 2 | 263 | 23 | 281 | 1.17e-39 | 140 |
MS.gene050265.t1 | MTR_3g061350 | 32.841 | 271 | 161 | 6 | 2 | 263 | 26 | 284 | 1.15e-38 | 137 |
MS.gene050265.t1 | MTR_5g044670 | 30.169 | 295 | 167 | 8 | 1 | 271 | 31 | 310 | 1.83e-37 | 135 |
MS.gene050265.t1 | MTR_3g061320 | 33.088 | 272 | 154 | 9 | 2 | 263 | 26 | 279 | 6.32e-36 | 130 |
MS.gene050265.t1 | MTR_7g050640 | 68.605 | 86 | 27 | 0 | 1 | 86 | 28 | 113 | 3.55e-35 | 123 |
MS.gene050265.t1 | MTR_3g061340 | 31.752 | 274 | 150 | 9 | 2 | 263 | 26 | 274 | 2.47e-33 | 123 |
MS.gene050265.t1 | MTR_3g061310 | 30.282 | 284 | 152 | 9 | 2 | 263 | 26 | 285 | 1.82e-32 | 121 |
MS.gene050265.t1 | MTR_1g035640 | 32.852 | 277 | 167 | 9 | 2 | 270 | 21 | 286 | 6.79e-32 | 123 |
MS.gene050265.t1 | MTR_1g035570 | 30.634 | 284 | 159 | 10 | 2 | 264 | 21 | 287 | 5.85e-26 | 106 |
MS.gene050265.t1 | MTR_5g070440 | 27.106 | 273 | 154 | 7 | 2 | 267 | 37 | 271 | 6.74e-26 | 103 |
MS.gene050265.t1 | MTR_3g005480 | 27.737 | 274 | 143 | 9 | 2 | 267 | 37 | 263 | 1.45e-25 | 102 |
MS.gene050265.t1 | MTR_1g035620 | 29.391 | 279 | 153 | 10 | 2 | 262 | 25 | 277 | 8.91e-25 | 102 |
MS.gene050265.t1 | MTR_3g061330 | 31.868 | 182 | 109 | 2 | 2 | 174 | 26 | 201 | 9.20e-25 | 100 |
MS.gene050265.t1 | MTR_1g050845 | 30.483 | 269 | 151 | 8 | 2 | 262 | 25 | 265 | 1.20e-24 | 103 |
MS.gene050265.t1 | MTR_3g005490 | 27.372 | 274 | 143 | 9 | 2 | 267 | 37 | 262 | 1.91e-24 | 99.8 |
MS.gene050265.t1 | MTR_3g061290 | 50.602 | 83 | 41 | 0 | 2 | 84 | 26 | 108 | 1.80e-23 | 95.5 |
MS.gene050265.t1 | MTR_6g061070 | 28.239 | 301 | 166 | 10 | 1 | 263 | 33 | 321 | 2.38e-22 | 96.7 |
MS.gene050265.t1 | MTR_6g043890 | 27.083 | 288 | 154 | 10 | 2 | 255 | 31 | 296 | 4.88e-22 | 94.4 |
MS.gene050265.t1 | MTR_3g005420 | 27.341 | 267 | 161 | 6 | 2 | 267 | 305 | 539 | 1.97e-21 | 94.4 |
MS.gene050265.t1 | MTR_1g021360 | 27.138 | 269 | 178 | 7 | 2 | 256 | 198 | 462 | 4.39e-21 | 93.2 |
MS.gene050265.t1 | MTR_3g005460 | 27.007 | 274 | 161 | 7 | 2 | 267 | 278 | 520 | 1.25e-20 | 92.0 |
MS.gene050265.t1 | MTR_3g005460 | 24.419 | 258 | 141 | 7 | 2 | 259 | 41 | 244 | 1.17e-16 | 80.1 |
MS.gene050265.t1 | MTR_4g119990 | 26.224 | 286 | 182 | 9 | 2 | 263 | 31 | 311 | 1.18e-18 | 85.5 |
MS.gene050265.t1 | MTR_1g021410 | 25.161 | 310 | 179 | 9 | 2 | 263 | 38 | 342 | 8.59e-18 | 82.8 |
MS.gene050265.t1 | MTR_1g035520 | 27.273 | 308 | 166 | 10 | 1 | 262 | 87 | 382 | 4.20e-17 | 80.9 |
MS.gene050265.t1 | MTR_1g035480 | 37.313 | 134 | 70 | 4 | 1 | 134 | 32 | 151 | 4.57e-17 | 77.8 |
MS.gene050265.t1 | MTR_4g068320 | 41.573 | 89 | 50 | 1 | 2 | 88 | 22 | 110 | 8.00e-17 | 80.5 |
MS.gene050265.t1 | MTR_4g068320 | 35.075 | 134 | 78 | 5 | 138 | 269 | 267 | 393 | 3.53e-14 | 72.8 |
MS.gene050265.t1 | MTR_1g021400 | 25.484 | 310 | 177 | 11 | 2 | 263 | 46 | 349 | 8.32e-17 | 80.1 |
MS.gene050265.t1 | MTR_3g061220 | 42.169 | 83 | 35 | 1 | 2 | 84 | 26 | 95 | 1.21e-16 | 74.7 |
MS.gene050265.t1 | MTR_1g034240 | 39.759 | 83 | 50 | 0 | 2 | 84 | 23 | 105 | 3.07e-16 | 78.6 |
MS.gene050265.t1 | MTR_1g034240 | 31.788 | 151 | 91 | 5 | 138 | 283 | 272 | 415 | 2.26e-14 | 73.2 |
MS.gene050265.t1 | MTR_1g035510 | 35.099 | 151 | 79 | 5 | 1 | 148 | 1 | 135 | 3.14e-16 | 76.3 |
MS.gene050265.t1 | MTR_3g005495 | 36.047 | 86 | 55 | 0 | 2 | 87 | 29 | 114 | 3.20e-16 | 79.0 |
MS.gene050265.t1 | MTR_3g005495 | 27.953 | 254 | 136 | 8 | 2 | 255 | 259 | 465 | 1.30e-15 | 77.0 |
MS.gene050265.t1 | MTR_3g005440 | 30.172 | 116 | 76 | 1 | 2 | 112 | 36 | 151 | 1.33e-15 | 77.0 |
MS.gene050265.t1 | MTR_3g005440 | 25.389 | 193 | 110 | 3 | 5 | 191 | 261 | 425 | 3.65e-11 | 63.5 |
MS.gene050265.t1 | MTR_1g035650 | 30.808 | 198 | 98 | 6 | 2 | 179 | 25 | 203 | 1.51e-14 | 71.2 |
MS.gene050265.t1 | MTR_1g035500 | 35.821 | 134 | 72 | 4 | 1 | 134 | 40 | 159 | 5.05e-14 | 69.3 |
MS.gene050265.t1 | MTR_1g021350 | 25.347 | 288 | 173 | 10 | 2 | 256 | 37 | 315 | 9.62e-14 | 70.9 |
MS.gene050265.t1 | MTR_1g035470 | 36.923 | 130 | 67 | 5 | 1 | 130 | 1 | 115 | 2.47e-13 | 66.2 |
MS.gene050265.t1 | MTR_1g033740 | 34.426 | 122 | 67 | 3 | 1 | 122 | 37 | 145 | 3.86e-13 | 67.0 |
MS.gene050265.t1 | MTR_1g034210 | 37.349 | 83 | 50 | 1 | 2 | 84 | 23 | 103 | 1.25e-12 | 67.4 |
MS.gene050265.t1 | MTR_1g034210 | 37.349 | 83 | 50 | 1 | 2 | 84 | 23 | 103 | 1.64e-12 | 67.4 |
MS.gene050265.t1 | MTR_1g021320 | 25.568 | 176 | 110 | 3 | 2 | 156 | 198 | 373 | 2.54e-11 | 64.3 |
MS.gene050265.t1 | MTR_1g021320 | 32.576 | 132 | 79 | 2 | 2 | 127 | 41 | 168 | 6.12e-11 | 63.2 |
MS.gene050265.t1 | MTR_1g021380 | 28.846 | 156 | 86 | 2 | 2 | 157 | 37 | 167 | 2.78e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050265.t1 | AT4G01580 | 46.591 | 88 | 47 | 0 | 2 | 89 | 46 | 133 | 2.58e-19 | 84.0 |
MS.gene050265.t1 | AT1G49475 | 45.349 | 86 | 46 | 1 | 2 | 87 | 50 | 134 | 3.73e-18 | 80.9 |
MS.gene050265.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 4.05e-18 | 80.9 |
MS.gene050265.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 5.01e-18 | 80.9 |
MS.gene050265.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 9 | 96 | 5.71e-18 | 80.1 |
MS.gene050265.t1 | AT3G18990 | 45.783 | 83 | 45 | 0 | 2 | 84 | 22 | 104 | 8.55e-18 | 82.4 |
MS.gene050265.t1 | AT3G18990 | 33.071 | 127 | 78 | 3 | 138 | 264 | 217 | 336 | 8.28e-13 | 68.2 |
MS.gene050265.t1 | AT3G18990 | 45.783 | 83 | 45 | 0 | 2 | 84 | 22 | 104 | 9.95e-18 | 82.8 |
MS.gene050265.t1 | AT3G18990 | 33.077 | 130 | 80 | 3 | 138 | 267 | 217 | 339 | 3.01e-13 | 69.7 |
MS.gene050265.t1 | AT1G49480 | 33.071 | 127 | 78 | 3 | 138 | 264 | 102 | 221 | 3.49e-14 | 70.9 |
MS.gene050265.t1 | AT1G49480 | 33.071 | 127 | 78 | 3 | 138 | 264 | 102 | 221 | 3.49e-14 | 70.9 |
MS.gene050265.t1 | AT1G49480 | 33.071 | 127 | 78 | 3 | 138 | 264 | 102 | 221 | 3.49e-14 | 70.9 |
Find 46 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.1:+52563334 | MS.gene050265:CDS |
GATCAAAATGTGGTCCTTTA+AGG | 0.186650 | 7.1:-52563383 | None:intergenic |
TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.1:+52562349 | MS.gene050265:CDS |
GGAACACCGATTTCTTATTA+TGG | 0.238357 | 7.1:+52562861 | MS.gene050265:CDS |
TATTTCTCGACAAACTTTCT+TGG | 0.256848 | 7.1:-52562281 | None:intergenic |
AGAAAGTTTGTCGAGAAATA+TGG | 0.293086 | 7.1:+52562284 | MS.gene050265:CDS |
CTAATCAGGATGACCCTTAA+AGG | 0.296784 | 7.1:+52563369 | MS.gene050265:CDS |
GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.1:-52562510 | None:intergenic |
CCAAAGAGTTGCAGCTAAAA+AGG | 0.311285 | 7.1:+52562532 | MS.gene050265:CDS |
CGGTAATAGACACTTTGATT+TGG | 0.314085 | 7.1:+52563287 | MS.gene050265:CDS |
TTCCATCAACCACGTGAAAT+AGG | 0.327923 | 7.1:+52562596 | MS.gene050265:CDS |
AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.1:+52562336 | MS.gene050265:CDS |
CTTTAAGGGTCATCCTGATT+AGG | 0.351706 | 7.1:-52563368 | None:intergenic |
ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7.1:-52563357 | None:intergenic |
TTCCTATTTCACGTGGTTGA+TGG | 0.411563 | 7.1:-52562598 | None:intergenic |
GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.1:+52563327 | MS.gene050265:CDS |
GGCCTGCAAAGTACCTAATC+AGG | 0.423211 | 7.1:+52563355 | MS.gene050265:CDS |
ATCAAAATGTGGTCCTTTAA+GGG | 0.437280 | 7.1:-52563382 | None:intergenic |
AACTTACCATAATAAGAAAT+CGG | 0.464762 | 7.1:-52562867 | None:intergenic |
GATATTTGAAAAGCAAAAGA+TGG | 0.466088 | 7.1:-52562445 | None:intergenic |
TTAAATTTGGTAAATAGTGA+TGG | 0.478699 | 7.1:+52562362 | MS.gene050265:CDS |
GAGAAGCTTCTTCTTTCACT+TGG | 0.486869 | 7.1:-52563649 | None:intergenic |
TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7.1:+52562634 | MS.gene050265:CDS |
ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.1:+52562326 | MS.gene050265:CDS |
AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.1:+52563432 | MS.gene050265:CDS |
TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7.1:-52562527 | None:intergenic |
CAGAATATACCACGTATGTT+CGG | 0.512344 | 7.1:+52563267 | MS.gene050265:intron |
TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.1:-52563496 | None:intergenic |
CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.1:-52562826 | None:intergenic |
TGATCTCACAACTGGATGGA+AGG | 0.549699 | 7.1:+52563401 | MS.gene050265:CDS |
GTAGCAACTTTGCCTCATGC+TGG | 0.565728 | 7.1:+52562656 | MS.gene050265:CDS |
TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.1:+52563300 | MS.gene050265:CDS |
CCACGTGAAATAGGAAGCAA+TGG | 0.577300 | 7.1:+52562605 | MS.gene050265:CDS |
GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.1:+52562422 | MS.gene050265:CDS |
TTTGTCGAGAAATATGGAGA+AGG | 0.578412 | 7.1:+52562290 | MS.gene050265:CDS |
AGAAGCTTCTTCTTTCACTT+GGG | 0.579559 | 7.1:-52563648 | None:intergenic |
CCATTGCTTCCTATTTCACG+TGG | 0.606111 | 7.1:-52562605 | None:intergenic |
GTGAAAGAAGAAGCTTCTCA+AGG | 0.611713 | 7.1:+52563653 | MS.gene050265:CDS |
TTGGACTCTCTGCCAGCATG+AGG | 0.620434 | 7.1:-52562668 | None:intergenic |
TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.1:-52562585 | None:intergenic |
TGGATGGAAGGCATTTGCAA+AGG | 0.644602 | 7.1:+52563413 | MS.gene050265:CDS |
TGTCATGCGTGCATCATACG+TGG | 0.677837 | 7.1:+52562840 | MS.gene050265:CDS |
TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.1:-52562830 | None:intergenic |
CATGCTGGCAGAGAGTCCAA+AGG | 0.699372 | 7.1:+52562671 | MS.gene050265:CDS |
CCAGTTGTGAGATCAAAATG+TGG | 0.701103 | 7.1:-52563393 | None:intergenic |
TGTCTATTACCGAACATACG+TGG | 0.717709 | 7.1:-52563276 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATCACATAAATGTTTAT+TGG | + | chr7.1:52563106-52563125 | MS.gene050265:intron | 15.0% |
!! | AAAAATTAGAAAGTTCTTGT+TGG | - | chr7.1:52563215-52563234 | None:intergenic | 20.0% |
!! | AACTTACCATAATAAGAAAT+CGG | - | chr7.1:52562870-52562889 | None:intergenic | 20.0% |
!! | TATCTGATTGAATAATTGTT+AGG | - | chr7.1:52563087-52563106 | None:intergenic | 20.0% |
!! | TGCAAAATGGAAATTAAATT+TGG | + | chr7.1:52562349-52562368 | MS.gene050265:CDS | 20.0% |
!! | TTAAATTTGGTAAATAGTGA+TGG | + | chr7.1:52562362-52562381 | MS.gene050265:CDS | 20.0% |
!!! | CATTTATCTTTTCTTTTGAT+TGG | + | chr7.1:52563244-52563263 | MS.gene050265:intron | 20.0% |
!!! | GTTTATTTGTTGTTAAATGA+AGG | + | chr7.1:52563327-52563346 | MS.gene050265:CDS | 20.0% |
!!! | TAAATAGTGATGGAAAAATA+TGG | + | chr7.1:52562372-52562391 | MS.gene050265:CDS | 20.0% |
! | AAATATGGTTTGAAAAAGGT+TGG | + | chr7.1:52562387-52562406 | MS.gene050265:CDS | 25.0% |
! | ATATATCTAAAGACTCCAAA+TGG | + | chr7.1:52562326-52562345 | MS.gene050265:CDS | 25.0% |
! | GAATGGATAATTTATCTCTA+AGG | - | chr7.1:52562513-52562532 | None:intergenic | 25.0% |
! | GATATTTGAAAAGCAAAAGA+TGG | - | chr7.1:52562448-52562467 | None:intergenic | 25.0% |
! | GGAAAAATATGGTTTGAAAA+AGG | + | chr7.1:52562383-52562402 | MS.gene050265:CDS | 25.0% |
! | TCTAAAGATATGAACAATGA+AGG | - | chr7.1:52563499-52563518 | None:intergenic | 25.0% |
! | TGCAAAATTTGAACACAATA+AGG | - | chr7.1:52562737-52562756 | None:intergenic | 25.0% |
! | TGTTGTTAAATGAAGGAATT+TGG | + | chr7.1:52563334-52563353 | MS.gene050265:CDS | 25.0% |
!! | TATTGTGTTCAAATTTTGCA+GGG | + | chr7.1:52562737-52562756 | MS.gene050265:intron | 25.0% |
!! | TTATTGTGTTCAAATTTTGC+AGG | + | chr7.1:52562736-52562755 | MS.gene050265:intron | 25.0% |
AAGGACAATAACTTGAAAGT+TGG | + | chr7.1:52563432-52563451 | MS.gene050265:CDS | 30.0% | |
AGAAAGTTTGTCGAGAAATA+TGG | + | chr7.1:52562284-52562303 | MS.gene050265:CDS | 30.0% | |
ATCAAAATGTGGTCCTTTAA+GGG | - | chr7.1:52563385-52563404 | None:intergenic | 30.0% | |
ATTGTTCAACATCTCAAAGT+AGG | + | chr7.1:52563541-52563560 | MS.gene050265:intron | 30.0% | |
GACACAATCTTATATACCTT+TGG | - | chr7.1:52562690-52562709 | None:intergenic | 30.0% | |
TATTTCTCGACAAACTTTCT+TGG | - | chr7.1:52562284-52562303 | None:intergenic | 30.0% | |
TGAAGTTGAGAAATTGCAAA+AGG | + | chr7.1:52562634-52562653 | MS.gene050265:CDS | 30.0% | |
! | AATTTCCATTTTGCACCATT+TGG | - | chr7.1:52562344-52562363 | None:intergenic | 30.0% |
!! | TTTGATTTGGATAAGAAGAG+AGG | + | chr7.1:52563300-52563319 | MS.gene050265:CDS | 30.0% |
AAAGAATTTCCCAGCTCAAA+TGG | + | chr7.1:52563056-52563075 | MS.gene050265:intron | 35.0% | |
AAGAACCAATTGGTATCAAC+GGG | - | chr7.1:52563030-52563049 | None:intergenic | 35.0% | |
AGAAGCTTCTTCTTTCACTT+GGG | - | chr7.1:52563651-52563670 | None:intergenic | 35.0% | |
CAAGAACCAATTGGTATCAA+CGG | - | chr7.1:52563031-52563050 | None:intergenic | 35.0% | |
CAGAATATACCACGTATGTT+CGG | + | chr7.1:52563267-52563286 | MS.gene050265:intron | 35.0% | |
CGGTAATAGACACTTTGATT+TGG | + | chr7.1:52563287-52563306 | MS.gene050265:CDS | 35.0% | |
GATCAAAATGTGGTCCTTTA+AGG | - | chr7.1:52563386-52563405 | None:intergenic | 35.0% | |
GGTAAGTTGCAAAGAAAGTT+TGG | + | chr7.1:52562882-52562901 | MS.gene050265:intron | 35.0% | |
TATTTCCCGTTGATACCAAT+TGG | + | chr7.1:52563022-52563041 | MS.gene050265:intron | 35.0% | |
TTTGTCGAGAAATATGGAGA+AGG | + | chr7.1:52562290-52562309 | MS.gene050265:CDS | 35.0% | |
! | AGCTTTTCTCTTTTGACCAT+TGG | - | chr7.1:52562561-52562580 | None:intergenic | 35.0% |
!! | ATTTTGATCTCACAACTGGA+TGG | + | chr7.1:52563397-52563416 | MS.gene050265:CDS | 35.0% |
!! | GGAACACCGATTTCTTATTA+TGG | + | chr7.1:52562861-52562880 | MS.gene050265:CDS | 35.0% |
!! | TGGTTGATGGAATTCAAAAG+AGG | - | chr7.1:52562588-52562607 | None:intergenic | 35.0% |
AATTTCCCAGCTCAAATGGA+GGG | + | chr7.1:52563060-52563079 | MS.gene050265:intron | 40.0% | |
AGACTCCAAATGGTGCAAAA+TGG | + | chr7.1:52562336-52562355 | MS.gene050265:CDS | 40.0% | |
ATCCTGATTAGGTACTTTGC+AGG | - | chr7.1:52563360-52563379 | None:intergenic | 40.0% | |
CCAAAGAGTTGCAGCTAAAA+AGG | + | chr7.1:52562532-52562551 | MS.gene050265:CDS | 40.0% | |
CCAGTTGTGAGATCAAAATG+TGG | - | chr7.1:52563396-52563415 | None:intergenic | 40.0% | |
CTAATCAGGATGACCCTTAA+AGG | + | chr7.1:52563369-52563388 | MS.gene050265:CDS | 40.0% | |
CTTTCTCGACAAGAACCAAT+TGG | - | chr7.1:52563040-52563059 | None:intergenic | 40.0% | |
GAGAAGCTTCTTCTTTCACT+TGG | - | chr7.1:52563652-52563671 | None:intergenic | 40.0% | |
GTGAAAGAAGAAGCTTCTCA+AGG | + | chr7.1:52563653-52563672 | MS.gene050265:CDS | 40.0% | |
TGTCTATTACCGAACATACG+TGG | - | chr7.1:52563279-52563298 | None:intergenic | 40.0% | |
TTCCATCAACCACGTGAAAT+AGG | + | chr7.1:52562596-52562615 | MS.gene050265:CDS | 40.0% | |
TTCCTATTTCACGTGGTTGA+TGG | - | chr7.1:52562601-52562620 | None:intergenic | 40.0% | |
! | CTTTAAGGGTCATCCTGATT+AGG | - | chr7.1:52563371-52563390 | None:intergenic | 40.0% |
! | TTAGCTGCAACTCTTTGGAA+TGG | - | chr7.1:52562530-52562549 | None:intergenic | 40.0% |
!! | CCACATTTTGATCTCACAAC+TGG | + | chr7.1:52563393-52563412 | MS.gene050265:CDS | 40.0% |
!!! | CCTTTTTAGCTGCAACTCTT+TGG | - | chr7.1:52562535-52562554 | None:intergenic | 40.0% |
CCACGTGAAATAGGAAGCAA+TGG | + | chr7.1:52562605-52562624 | MS.gene050265:CDS | 45.0% | |
CCATTGCTTCCTATTTCACG+TGG | - | chr7.1:52562608-52562627 | None:intergenic | 45.0% | |
CGCATGACAACAACAAAGGA+TGG | - | chr7.1:52562829-52562848 | None:intergenic | 45.0% | |
GAATTTCCCAGCTCAAATGG+AGG | + | chr7.1:52563059-52563078 | MS.gene050265:intron | 45.0% | |
GCAGCTAAAAAGGTCTCCAA+TGG | + | chr7.1:52562542-52562561 | MS.gene050265:CDS | 45.0% | |
TGATCTCACAACTGGATGGA+AGG | + | chr7.1:52563401-52563420 | MS.gene050265:CDS | 45.0% | |
TGCACGCATGACAACAACAA+AGG | - | chr7.1:52562833-52562852 | None:intergenic | 45.0% | |
! | CTATACGTATGCACTGACGA+AGG | + | chr7.1:52562914-52562933 | MS.gene050265:intron | 45.0% |
!! | TGGATGGAAGGCATTTGCAA+AGG | + | chr7.1:52563413-52563432 | MS.gene050265:CDS | 45.0% |
GTAGCAACTTTGCCTCATGC+TGG | + | chr7.1:52562656-52562675 | MS.gene050265:CDS | 50.0% | |
TAGGACCCTCCATTTGAGCT+GGG | - | chr7.1:52563068-52563087 | None:intergenic | 50.0% | |
TGTCATGCGTGCATCATACG+TGG | + | chr7.1:52562840-52562859 | MS.gene050265:CDS | 50.0% | |
TTAGGACCCTCCATTTGAGC+TGG | - | chr7.1:52563069-52563088 | None:intergenic | 50.0% | |
! | GAGCATCACTCTCTAGCTCA+TGG | + | chr7.1:52562422-52562441 | MS.gene050265:CDS | 50.0% |
! | GGCCTGCAAAGTACCTAATC+AGG | + | chr7.1:52563355-52563374 | MS.gene050265:CDS | 50.0% |
CATGCTGGCAGAGAGTCCAA+AGG | + | chr7.1:52562671-52562690 | MS.gene050265:CDS | 55.0% | |
TTGGACTCTCTGCCAGCATG+AGG | - | chr7.1:52562671-52562690 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 52562275 | 52563679 | 52562275 | ID=MS.gene050265 |
chr7.1 | mRNA | 52562275 | 52563679 | 52562275 | ID=MS.gene050265.t1;Parent=MS.gene050265 |
chr7.1 | exon | 52562275 | 52562692 | 52562275 | ID=MS.gene050265.t1.exon1;Parent=MS.gene050265.t1 |
chr7.1 | CDS | 52562275 | 52562692 | 52562275 | ID=cds.MS.gene050265.t1;Parent=MS.gene050265.t1 |
chr7.1 | exon | 52562758 | 52562882 | 52562758 | ID=MS.gene050265.t1.exon2;Parent=MS.gene050265.t1 |
chr7.1 | CDS | 52562758 | 52562882 | 52562758 | ID=cds.MS.gene050265.t1;Parent=MS.gene050265.t1 |
chr7.1 | exon | 52563270 | 52563558 | 52563270 | ID=MS.gene050265.t1.exon3;Parent=MS.gene050265.t1 |
chr7.1 | CDS | 52563270 | 52563558 | 52563270 | ID=cds.MS.gene050265.t1;Parent=MS.gene050265.t1 |
chr7.1 | exon | 52563642 | 52563679 | 52563642 | ID=MS.gene050265.t1.exon4;Parent=MS.gene050265.t1 |
chr7.1 | CDS | 52563642 | 52563679 | 52563642 | ID=cds.MS.gene050265.t1;Parent=MS.gene050265.t1 |
Gene Sequence |
Protein sequence |