AlfalfaGEDB | MS.gene050340

M. sativa cultivar XinJiangDaYe / MS.gene050340

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050340.t1	XP_003625781.1	89.3	419	45	0	1	419	54	472	2.90E-181	644.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050340.t1	G7L602	89.3	419	45	0	1	419	54	472	2.1e-181	644.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene050340.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050340.t1	MTR_7g104190	92.584	445	33	0	1	445	54	498	0.0	849

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050340.t1	AT1G19490	36.267	375	177	10	83	445	146	470	1.52e-48	172

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Find 107 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCCACCTTAGCGA+TGG	0.585116	7.2:-8507749	MS.gene050340:CDS
AAACAGGATAATCTTCCTCT+AGG	0.575107	7.2:-8506998	MS.gene050340:CDS
AAATGGTTATAAAGAAACCA+TGG	0.613612	7.2:+8507283	None:intergenic
AACTTGGAGTAGCATGGCCA+AGG	0.586320	7.2:+8506855	None:intergenic
AAGAAGCACGGAGAATACGA+AGG	0.656333	7.2:-8508735	MS.gene050340:CDS
AAGCTAATTACCCTAACCGT+AGG	0.587473	7.2:+8510517	None:intergenic
AATGCTTCAGGCTCTGAGTG+AGG	0.647299	7.2:-8507782	MS.gene050340:intron
AATTGAACTTGATTAGATGA+CGG	0.624936	7.2:+8507226	None:intergenic
ACATTCCACTTCCATCACCA+AGG	0.678562	7.2:-8506714	MS.gene050340:CDS
ACCAGGTGCAGGTGATACCT+CGG	0.636913	7.2:+8507312	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTACTGAGTTTCTGTTC+AGG	-	chr7.2:8508387-8508406	MS.gene050340:intron	30.0%
ACACAATTTGGATGTTTAGT+TGG	-	chr7.2:8507107-8507126	MS.gene050340:CDS	30.0%
AGAGATCGGTGTAAATTATA+GGG	+	chr7.2:8509287-8509306	None:intergenic	30.0%
ATAACTGTCTAACTGGAAAA+TGG	+	chr7.2:8509888-8509907	None:intergenic	30.0%
ATGCAAGAAATCTTTGAGTA+TGG	-	chr7.2:8509690-8509709	MS.gene050340:intron	30.0%
CACATTATTGAAAAGTTCCA+TGG	-	chr7.2:8510354-8510373	MS.gene050340:intron	30.0%
CCCATTTCCTAAACTATTTA+AGG	+	chr7.2:8510202-8510221	None:intergenic	30.0%
CTCCATAAAATGTTTCAACT+TGG	+	chr7.2:8508122-8508141	None:intergenic	30.0%
GACTACTAATAAGCTCTTAA+AGG	-	chr7.2:8509647-8509666	MS.gene050340:intron	30.0%
GATTATCCTGTTTATCTTCT+AGG	+	chr7.2:8510146-8510165	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	8506541	8510632	8506541	ID=MS.gene050340
chr7.2	mRNA	8506541	8510632	8506541	ID=MS.gene050340.t1;Parent=MS.gene050340
chr7.2	exon	8510528	8510632	8510528	ID=MS.gene050340.t1.exon1;Parent=MS.gene050340.t1
chr7.2	CDS	8510528	8510632	8510528	ID=cds.MS.gene050340.t1;Parent=MS.gene050340.t1
chr7.2	exon	8508835	8509002	8508835	ID=MS.gene050340.t1.exon2;Parent=MS.gene050340.t1
chr7.2	CDS	8508835	8509002	8508835	ID=cds.MS.gene050340.t1;Parent=MS.gene050340.t1
chr7.2	exon	8508687	8508764	8508687	ID=MS.gene050340.t1.exon3;Parent=MS.gene050340.t1
chr7.2	CDS	8508687	8508764	8508687	ID=cds.MS.gene050340.t1;Parent=MS.gene050340.t1
chr7.2	exon	8507729	8507794	8507729	ID=MS.gene050340.t1.exon4;Parent=MS.gene050340.t1
chr7.2	CDS	8507729	8507794	8507729	ID=cds.MS.gene050340.t1;Parent=MS.gene050340.t1
chr7.2	exon	8507499	8507564	8507499	ID=MS.gene050340.t1.exon5;Parent=MS.gene050340.t1
chr7.2	CDS	8507499	8507564	8507499	ID=cds.MS.gene050340.t1;Parent=MS.gene050340.t1
chr7.2	exon	8506541	8507395	8506541	ID=MS.gene050340.t1.exon6;Parent=MS.gene050340.t1
chr7.2	CDS	8506541	8507395	8506541	ID=cds.MS.gene050340.t1;Parent=MS.gene050340.t1

Gene Sequence

>MS.gene050340

ATGCGCCATACAGCTCATTCCGCCGATATATGTTGCACCCAACCAGACACCTGCCTATTCATAAGCGATTCAACTATTCCTCACTCGGATCCTCCTACGGTTAGGGTAATTAGCTTAGTTTAACTGTTCTTGTGTTTCCTTAATTATAATTCAATTTTAACGGATAATATTTGACCGTAAGACATGATTATACTATTGTTGATTTGATGTTGAATTATGTGACCACACGAGTCAACTATAACGGACCATAGTCTGCATATATTTTAATTTTTATGCCGATGATAAAGAAGTGAATTAAATAGCTAATTTCAAACATAAAACCATTAAAAAATGATTTTGAAACAAATTTGACAATAATTTAAAAGGTTAACATGGTTTAATTATGTGGATAATCTTTTAGTGCATATGGTTGATAAATATAACAAATTGTCATGACTTATTGGCCATCCACTTAATATAATTAACCATGATTTTTAGGTGTATATTTGAGGATCAATTGTGTTTAATAGATATAAATATAGATATAATATACATTTGAACACGTGAAAACCGCTTATAATAATTGAACACAATTTGGATGTTTAGTTGGTAGCACTTTTTTTTTTGACAAAAGTTGGTAGTACTTAGTAGCATCATATATATTTGGACACTTTAAAATCATGGTTAATTTGATGATCCTGTGTTTTAACAACTTATATTCATCAAACACAATCACACATATTTAAGTTGTGTATCATCAATATTGTTTTTGAAATTTTATTTTCAACAGATGGTTATCTATTTTCACCTTTTCTATAAACCAAGTAACACGTCAACTTTTCATATAAACTAAGTTACGATATCTTGATCAAGAAATCAATGATTGATATTATATGCACATGTAACAAATAATAATTGATGCATTAAAATATGACTATTAATTTTTCTGCTTTAGGATGTATTCACTTTAAAGGAGTCAAATTAGCTACGTAAGACTTGTTGATTGTGTGTTGCATTTCATTTTATCCTTATTTGGGGACAGAATAGAGAAAGAAATCCGACGTTCTGTGTGCTCTCTATTTTGTTGACAATTTAATTTATTGTATACACATGAATTTTTGGGTGTGCGTCTTTTATCGTTATTGTAATGCTAGTAGTAGTACCAATGTATGAATACAACAAGCTAAAAACATGTCTAATATTTGTTAGTAGTGTTGTCAAATAGCAGCTATAGTTAGCGGAATTTGAACAAATCATCACTGTTACGTGATGCATGATATAGTACAAAATCACAAAGTGTTGTTAAATAGAGGCGCTTTAACGCGTAACGTAGTCTAATTTAAACAAACTACTATTTACCACAATATGCGATTGACAACACTAATATTTGTTTATTGAATTGATTTTGGTTTTGCTGGTACTCCTTGTTAATGGAACATCCGTGTCTGAGTTATTTTCTTCATTCCTTATGGTCTTGTTATTTTGTTACTTATGGAGAGAAAATATAAACTTATCTAACTTAATTATTTGTTTTCCTGGTATAGTAAAAATGGATAAGTCAATTGCACACATCCAATTCCAATAATTAAAGGAGTATTACCAAGTTGAAACATTTTATGGAGGAATTTTGAAATGATTTAATTTATGGCAGGGCCAAGCTGTTGCAAGTCAGCAGCTAGATCAAAAAATATCCAGTTCTACATCCGTAAAAACAGAAAGGATTCAGCAGAATGACTGCTTAAAAAACATGAAGGTGGAGCAAGATGCCTATTACCCTAAGACTACTCACTCCAATAAGTCGAAACGGAATTTAACCGAGGTATAAGAGAATGTAATTTCTTTTACTTCAATTTCTAGGGATACTTGTAATTTACTGAGTTTCTGTTCAGGAAGAAAAAGAAGCACGGAGAATACGAAGGGTATTGGCAAATAGAGAGTCAGCTAGGCAAACAATTCGCCGTAGGCAGGTATTTACATTGGCAGATAAGTTTACCGTTGTATAGATTTGCTTATGACATCCCAAAATCTAAACTAAACACACATTGGCACATGCTTGGTGACTTGGTGTGTTCTATTGAACTACTAGCCACATGTGTTTTTATATGCTATTACTTCTTAGTCAAATGTGTGGTTGTGACCCAAAGTTAATGTGGTTAGGCATGTAGTTTTTCATAGTGCACGTTAACAGTAACAAGTCCTATTTTGACTAATATGAAGAGTCATGCTACCAGCACATGAATTTTGTTATAATAGTTGGATGTGTCCTCCAGGTCCCAAAATGTAGAGATTGACAGCAAATCTAAAGCCTTACTGTTAGTCTGTTACCATGTTTTTGACCCACATGCAGTAATGCTTGTAACGATCGATATGCCCATTTTGCAATGACTGCAATGTTTGGTCCTCTCTTATTTTTCAAAGCTTAATTTTATTTTAATTGACAGCTTCTATGATTATAGATAGTTATACTCTAACTTCTTTACACTATTTAAAATAAATATAAATCATATATTAAATCTATATTCTTTTCAGCAAAATCTATGAAGCAAAACTTTCAGATTAGCAGTTTAATTTCTATGCTGTCCAGTTTAAAAACACATATTCTTACAGGACCAAAAGATTCTAAAATCTACACTTCAAAGTTTGCATAATCATTATTGCAGACTTCATTCCCAAATTACCTGCTGAACAAGTAAATTTGTAATAACCCTTTAAAAAATTCAGGGCTTGTATACAAGAAAAGTGGCTTAAACAACCTTTTATTAATCCCTATAATTTACACCGATCTCTCGTTGTTCTGGCTGATTTTTTTTTTCATTGAAATATTGAGTGGTTTCTTTTCTTTTGTATAAAATGCTTCAGGCTCTGAGTGAGGAGTTAAGCAGAAAAGCTGCCACCTTAGCGATGGAAAATGAAAACCTGAAGAGGGTATGCTTTTTCTGTCTTCCAATTATACTCCCTTCCTCTTTATTCTGTTGGGCTTAATTGTATGATGCATTTTGTTTTTAGATATTACCGCTTCTCAATTAATTTCATCTTTTTGTGTTTTTCTAATCATTCACTTTTCCGCATGTGTCATTTCTGGTGAAAAGAAGAAGGAGTCGGCTTTGAAAGAGTATCAGTCTTTAGAGACTACTAATAAGCTCTTAAAGGCACAAGTAAGATGTTTTTCTATGCAAGAAATCTTTGAGTATGGGATAACTCTTTTTGTTTGCAAAAGTAAATATATACTGGAAAACTGACATTTGCTTCTGTTTGTAGATAGCTAAGTCAATAAACACTGTAGTGGAGAAAACTCCTGTTGTGCAGGAGTTGTCTATGTCCGAGGTATCACCTGCACCTGGTACTAGTCCATGGTTTCTTTATAACCATTTTCCAGTTAGACAGTTATTTTGGCCCTCCATCCTTCCGTCATCTAATCAAGTTCAATTACAACATACACCATTTAATTCCATTGCCATTCCATCGCATGTATATGTACCATGTTCTTCCAAGTCTGAGTCTCTTCACAAACAAAATAACCTAATAAATGACAATCAAACACAAAATCCATTGTACATGTTTCCATGTCCTTGGTTATACCCTCCTCCGGACATTGGAAACGGACAACAGCCACCTTCCTGTGGCCTAGAAGATAAACAGGATAATCTTCCTCTAGGTGAACAATGTAGTACTACTTTATCCTTAAATAGTTTAGGAAATGGGGATTATCATGCAACTCTACCCATCAAACTGAAAATAGAAGCTTCTGACTGGGCAGAATCCAGATCTAGTAATGACCTTGGCCATGCTACTCCAAGTTTTTCTTCAGATGGAGGTGAGCAGAAACCAAGATGTCACATTATTGAAAAGTTCCATGGACCTGCAGTTAATTGTAATGGTTATGCTTCTGTAGTCAAGCAAGAACCCGAGCTTCAATTACATTCCACTTCCATCACCAAGGTATCTTCAACAGCTTCTCATATCACAACTTCACAGGAAAAGAAACAAGAACAGTTCATATGCCCAGGCAAAAATCTAGTGGATGCAGTTGCTGCAGCAGAGGCACGGAAGAGGAGAAAGGAACTAACAAAACTAAAAAGCATTCAAAGCAGACAGTCTAGGATGGAGTGTTGA

Protein sequence

>MS.gene050340.t1

MRHTAHSADICCTQPDTCLFISDSTIPHSDPPTVRGQAVASQQLDQKISSSTSVKTERIQQNDCLKNMKVEQDAYYPKTTHSNKSKRNLTEEEKEARRIRRVLANRESARQTIRRRQALSEELSRKAATLAMENENLKRKKESALKEYQSLETTNKLLKAQIAKSINTVVEKTPVVQELSMSEVSPAPGTSPWFLYNHFPVRQLFWPSILPSSNQVQLQHTPFNSIAIPSHVYVPCSSKSESLHKQNNLINDNQTQNPLYMFPCPWLYPPPDIGNGQQPPSCGLEDKQDNLPLGEQCSTTLSLNSLGNGDYHATLPIKLKIEASDWAESRSSNDLGHATPSFSSDGGEQKPRCHIIEKFHGPAVNCNGYASVVKQEPELQLHSTSITKVSSTASHITTSQEKKQEQFICPGKNLVDAVAAAEARKRRKELTKLKSIQSRQSRMEC