Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05039.t1 | AES68281.1 | 86.1 | 274 | 28 | 1 | 1 | 274 | 1 | 264 | 1.50E-132 | 482.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05039.t1 | Q8L3W1 | 30.6 | 343 | 141 | 8 | 21 | 274 | 6 | 340 | 1.2e-27 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05039.t1 | G7IYE9 | 86.1 | 274 | 28 | 1 | 1 | 274 | 1 | 264 | 1.1e-132 | 482.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05039.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05039.t1 | MTR_3g005480 | 86.131 | 274 | 28 | 1 | 1 | 274 | 1 | 264 | 1.89e-178 | 492 |
| MS.gene05039.t1 | MTR_3g005490 | 81.159 | 276 | 41 | 2 | 1 | 276 | 1 | 265 | 1.97e-165 | 459 |
| MS.gene05039.t1 | MTR_5g070440 | 70.290 | 276 | 80 | 1 | 1 | 276 | 1 | 274 | 8.46e-142 | 399 |
| MS.gene05039.t1 | MTR_3g005420 | 66.284 | 261 | 86 | 1 | 16 | 276 | 284 | 542 | 1.06e-120 | 356 |
| MS.gene05039.t1 | MTR_3g005420 | 56.134 | 269 | 92 | 4 | 1 | 267 | 20 | 264 | 3.40e-88 | 272 |
| MS.gene05039.t1 | MTR_3g005460 | 64.045 | 267 | 90 | 2 | 16 | 276 | 257 | 523 | 1.81e-116 | 344 |
| MS.gene05039.t1 | MTR_3g005460 | 56.981 | 265 | 87 | 4 | 2 | 264 | 4 | 243 | 3.79e-94 | 287 |
| MS.gene05039.t1 | MTR_3g005420 | 55.939 | 261 | 78 | 2 | 16 | 276 | 265 | 488 | 1.38e-92 | 282 |
| MS.gene05039.t1 | MTR_3g005420 | 56.134 | 269 | 92 | 4 | 1 | 267 | 1 | 245 | 7.40e-89 | 272 |
| MS.gene05039.t1 | MTR_3g005440 | 61.233 | 227 | 80 | 2 | 3 | 228 | 223 | 442 | 2.94e-87 | 267 |
| MS.gene05039.t1 | MTR_3g005440 | 48.936 | 235 | 67 | 3 | 35 | 267 | 34 | 217 | 2.53e-60 | 197 |
| MS.gene05039.t1 | MTR_3g005495 | 55.686 | 255 | 92 | 6 | 16 | 268 | 238 | 473 | 1.63e-84 | 261 |
| MS.gene05039.t1 | MTR_3g005495 | 53.617 | 235 | 75 | 4 | 30 | 264 | 24 | 224 | 4.16e-75 | 236 |
| MS.gene05039.t1 | MTR_1g015350 | 38.462 | 247 | 70 | 7 | 1 | 246 | 1 | 166 | 1.25e-32 | 118 |
| MS.gene05039.t1 | MTR_3g098790 | 30.405 | 296 | 159 | 10 | 20 | 273 | 12 | 302 | 7.84e-31 | 117 |
| MS.gene05039.t1 | MTR_7g050710 | 30.293 | 307 | 165 | 10 | 14 | 273 | 6 | 310 | 3.79e-29 | 113 |
| MS.gene05039.t1 | MTR_1g034240 | 49.495 | 99 | 50 | 0 | 21 | 119 | 7 | 105 | 5.52e-29 | 114 |
| MS.gene05039.t1 | MTR_1g034240 | 37.405 | 131 | 69 | 4 | 148 | 271 | 269 | 393 | 1.98e-16 | 79.0 |
| MS.gene05039.t1 | MTR_7g050560 | 26.552 | 290 | 169 | 5 | 20 | 273 | 12 | 293 | 9.80e-28 | 108 |
| MS.gene05039.t1 | MTR_3g061310 | 29.856 | 278 | 162 | 8 | 21 | 269 | 12 | 285 | 8.52e-27 | 105 |
| MS.gene05039.t1 | MTR_7g050580 | 28.421 | 285 | 170 | 8 | 20 | 273 | 12 | 293 | 2.94e-26 | 105 |
| MS.gene05039.t1 | MTR_3g061370 | 29.123 | 285 | 168 | 7 | 14 | 269 | 2 | 281 | 1.29e-25 | 102 |
| MS.gene05039.t1 | MTR_0152s0100 | 42.982 | 114 | 62 | 1 | 161 | 274 | 2 | 112 | 1.72e-25 | 97.8 |
| MS.gene05039.t1 | MTR_0152s0100 | 42.982 | 114 | 62 | 1 | 161 | 274 | 2 | 112 | 1.72e-25 | 97.8 |
| MS.gene05039.t1 | MTR_4g068320 | 42.727 | 110 | 63 | 0 | 18 | 127 | 3 | 112 | 4.08e-25 | 103 |
| MS.gene05039.t1 | MTR_4g068320 | 32.292 | 192 | 98 | 7 | 104 | 273 | 210 | 391 | 5.04e-17 | 80.9 |
| MS.gene05039.t1 | MTR_3g061320 | 29.496 | 278 | 159 | 8 | 20 | 269 | 11 | 279 | 4.34e-25 | 101 |
| MS.gene05039.t1 | MTR_3g061350 | 29.787 | 282 | 156 | 10 | 21 | 269 | 12 | 284 | 1.32e-24 | 100 |
| MS.gene05039.t1 | MTR_8g103940 | 25.574 | 305 | 162 | 8 | 21 | 271 | 39 | 332 | 1.59e-24 | 102 |
| MS.gene05039.t1 | MTR_3g061340 | 28.727 | 275 | 158 | 9 | 21 | 269 | 12 | 274 | 2.84e-24 | 99.0 |
| MS.gene05039.t1 | MTR_1g034210 | 47.778 | 90 | 47 | 0 | 21 | 110 | 7 | 96 | 8.25e-23 | 95.9 |
| MS.gene05039.t1 | MTR_5g044670 | 25.510 | 294 | 175 | 8 | 21 | 273 | 16 | 306 | 1.21e-22 | 95.5 |
| MS.gene05039.t1 | MTR_1g034210 | 47.778 | 90 | 47 | 0 | 21 | 110 | 7 | 96 | 1.87e-22 | 95.5 |
| MS.gene05039.t1 | MTR_1g034210 | 34.677 | 124 | 68 | 4 | 155 | 271 | 242 | 359 | 8.86e-12 | 65.1 |
| MS.gene05039.t1 | MTR_7g050590 | 25.172 | 290 | 156 | 8 | 37 | 273 | 2 | 283 | 6.26e-21 | 90.5 |
| MS.gene05039.t1 | MTR_1g108780 | 26.298 | 289 | 151 | 8 | 36 | 271 | 12 | 291 | 4.14e-20 | 89.7 |
| MS.gene05039.t1 | MTR_3g061290 | 38.462 | 117 | 69 | 2 | 20 | 136 | 11 | 124 | 3.25e-19 | 83.6 |
| MS.gene05039.t1 | MTR_7g050720 | 37.037 | 108 | 68 | 0 | 13 | 120 | 2 | 109 | 6.57e-19 | 85.1 |
| MS.gene05039.t1 | MTR_3g061330 | 29.101 | 189 | 103 | 4 | 21 | 182 | 12 | 196 | 1.51e-18 | 82.8 |
| MS.gene05039.t1 | MTR_1g035460 | 27.517 | 298 | 142 | 12 | 37 | 271 | 2 | 288 | 4.34e-18 | 83.6 |
| MS.gene05039.t1 | MTR_6g061070 | 23.101 | 316 | 180 | 7 | 13 | 269 | 10 | 321 | 5.99e-17 | 80.5 |
| MS.gene05039.t1 | MTR_4g119990 | 26.710 | 307 | 163 | 12 | 20 | 271 | 14 | 313 | 1.07e-16 | 79.3 |
| MS.gene05039.t1 | MTR_6g043890 | 36.538 | 104 | 65 | 1 | 20 | 122 | 14 | 117 | 4.17e-16 | 77.4 |
| MS.gene05039.t1 | MTR_1g050845 | 25.275 | 273 | 179 | 8 | 19 | 274 | 7 | 271 | 8.32e-16 | 77.8 |
| MS.gene05039.t1 | MTR_7g050640 | 33.333 | 102 | 68 | 0 | 20 | 121 | 12 | 113 | 2.95e-14 | 68.2 |
| MS.gene05039.t1 | MTR_1g035440 | 31.731 | 104 | 70 | 1 | 20 | 122 | 14 | 117 | 6.22e-13 | 67.4 |
| MS.gene05039.t1 | MTR_3g061220 | 35.354 | 99 | 49 | 2 | 21 | 119 | 12 | 95 | 9.96e-13 | 63.9 |
| MS.gene05039.t1 | MTR_1g021400 | 36.842 | 95 | 60 | 0 | 20 | 114 | 29 | 123 | 1.39e-12 | 67.4 |
| MS.gene05039.t1 | MTR_1g021290 | 36.842 | 95 | 59 | 1 | 20 | 114 | 27 | 120 | 7.01e-12 | 65.1 |
| MS.gene05039.t1 | MTR_1g035510 | 32.653 | 98 | 63 | 2 | 37 | 134 | 2 | 96 | 2.14e-11 | 62.4 |
| MS.gene05039.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 20 | 111 | 22 | 112 | 2.19e-11 | 63.5 |
| MS.gene05039.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 20 | 111 | 22 | 112 | 2.70e-11 | 63.2 |
| MS.gene05039.t1 | MTR_1g021380 | 37.363 | 91 | 56 | 1 | 20 | 110 | 21 | 110 | 2.73e-11 | 63.5 |
| MS.gene05039.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 20 | 111 | 22 | 112 | 3.42e-11 | 63.5 |
| MS.gene05039.t1 | MTR_1g021320 | 34.066 | 91 | 60 | 0 | 20 | 110 | 24 | 114 | 4.02e-11 | 63.5 |
| MS.gene05039.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 20 | 111 | 22 | 112 | 4.09e-11 | 63.2 |
| MS.gene05039.t1 | MTR_1g035620 | 20.144 | 278 | 195 | 6 | 21 | 274 | 9 | 283 | 4.93e-11 | 62.8 |
| MS.gene05039.t1 | MTR_1g021435 | 35.870 | 92 | 59 | 0 | 20 | 111 | 21 | 112 | 5.13e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05039.t1 | AT3G18990 | 41.667 | 120 | 66 | 1 | 21 | 140 | 6 | 121 | 1.10e-24 | 101 |
| MS.gene05039.t1 | AT3G18990 | 38.028 | 142 | 74 | 5 | 140 | 275 | 208 | 341 | 1.76e-16 | 78.6 |
| MS.gene05039.t1 | AT3G18990 | 41.667 | 120 | 66 | 1 | 21 | 140 | 6 | 121 | 2.68e-24 | 100 |
| MS.gene05039.t1 | AT3G18990 | 37.762 | 143 | 75 | 5 | 140 | 276 | 208 | 342 | 4.22e-16 | 77.8 |
| MS.gene05039.t1 | AT1G49475 | 42.373 | 118 | 67 | 1 | 12 | 129 | 25 | 141 | 1.42e-23 | 95.1 |
| MS.gene05039.t1 | AT3G18960 | 39.316 | 117 | 68 | 1 | 5 | 121 | 17 | 130 | 9.97e-23 | 92.8 |
| MS.gene05039.t1 | AT3G18960 | 39.316 | 117 | 68 | 1 | 5 | 121 | 17 | 130 | 1.55e-22 | 92.8 |
| MS.gene05039.t1 | AT4G01580 | 38.793 | 116 | 69 | 1 | 6 | 121 | 17 | 130 | 6.57e-22 | 90.9 |
| MS.gene05039.t1 | AT1G49480 | 38.028 | 142 | 74 | 5 | 140 | 275 | 93 | 226 | 6.32e-17 | 78.2 |
| MS.gene05039.t1 | AT1G49480 | 38.028 | 142 | 74 | 5 | 140 | 275 | 93 | 226 | 6.32e-17 | 78.2 |
| MS.gene05039.t1 | AT1G49480 | 38.028 | 142 | 74 | 5 | 140 | 275 | 93 | 226 | 6.32e-17 | 78.2 |
| MS.gene05039.t1 | AT3G18960 | 36.957 | 92 | 58 | 0 | 30 | 121 | 2 | 93 | 1.63e-16 | 75.9 |
| MS.gene05039.t1 | AT4G31640 | 23.485 | 264 | 161 | 10 | 18 | 271 | 11 | 243 | 4.39e-12 | 65.9 |
Find 55 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTTCCCATTAGAATTT+TGG | 0.142530 | 3.4:+66003299 | None:intergenic |
| ACTGCTCTCCTTGAGAATTT+TGG | 0.150373 | 3.4:+66003139 | None:intergenic |
| AAGTGGGAGTCATGAGAAAA+AGG | 0.253305 | 3.4:-66003403 | MS.gene05039:CDS |
| GATGAGTTTATAACAAGATT+TGG | 0.275708 | 3.4:-66003723 | MS.gene05039:CDS |
| TTTGCAGAATACTATTCTAT+AGG | 0.313465 | 3.4:-66003591 | MS.gene05039:CDS |
| CATTGCAGATGATGATGATT+TGG | 0.324669 | 3.4:+66003089 | None:intergenic |
| TTGCAGAATACTATTCTATA+GGG | 0.341018 | 3.4:-66003590 | MS.gene05039:CDS |
| TGGAGCTTTATAGGAACATT+TGG | 0.361401 | 3.4:+66003159 | None:intergenic |
| TTCCTGTGTTTCAAATATGA+AGG | 0.394296 | 3.4:-66003558 | MS.gene05039:CDS |
| CTGTTCCTGATGGTTGTGAT+TGG | 0.401170 | 3.4:-66003671 | MS.gene05039:CDS |
| AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3.4:+66003726 | None:intergenic |
| TTCAAAACTCAAAGTACAAA+TGG | 0.427538 | 3.4:-66003477 | MS.gene05039:CDS |
| CCTTCTCTGCCGCCGGTGGC+CGG | 0.431469 | 3.4:+66005037 | None:intergenic |
| GGGATTTACTGTATTTCAAA+GGG | 0.445823 | 3.4:-66003055 | MS.gene05039:CDS |
| TGATGGTTGTGATTGGGAAA+TGG | 0.460791 | 3.4:-66003664 | MS.gene05039:CDS |
| ACTCCCACTTGTTTCAACCT+TGG | 0.468696 | 3.4:+66003416 | None:intergenic |
| CATCTGCAATGATAATATCA+AGG | 0.473557 | 3.4:-66003077 | MS.gene05039:CDS |
| TGTTCCTGATGGTTGTGATT+GGG | 0.473692 | 3.4:-66003670 | MS.gene05039:CDS |
| GGGGATTTACTGTATTTCAA+AGG | 0.481017 | 3.4:-66003056 | MS.gene05039:CDS |
| AGTGTCACAGTCGTAGAAAA+AGG | 0.493455 | 3.4:-66003440 | MS.gene05039:CDS |
| CCGGCCACCGGCGGCAGAGA+AGG | 0.494668 | 3.4:-66005037 | MS.gene05039:CDS |
| AATTCTAATGGGAAATTATG+TGG | 0.499901 | 3.4:-66003295 | MS.gene05039:intron |
| GAGAAGCTCTGTCCGGCCAC+CGG | 0.500690 | 3.4:-66005049 | MS.gene05039:CDS |
| CCCCTTCATATTTGAAACAC+AGG | 0.508323 | 3.4:+66003556 | None:intergenic |
| GTGGCCGGACAGAGCTTCTC+CGG | 0.513083 | 3.4:+66005052 | None:intergenic |
| TTGCAACAATGCAGCCTCGC+CGG | 0.519514 | 3.4:-66005071 | None:intergenic |
| GAATACTATTCTATAGGGTA+TGG | 0.523564 | 3.4:-66003585 | MS.gene05039:CDS |
| TTAGAATCCTTCTCTGCCGC+CGG | 0.528074 | 3.4:+66005030 | None:intergenic |
| TCCTGTGTTTCAAATATGAA+GGG | 0.529278 | 3.4:-66003557 | MS.gene05039:CDS |
| ATTTCCCAATCACAACCATC+AGG | 0.529466 | 3.4:+66003666 | None:intergenic |
| AGGGGCAACAATCTGTCTCA+TGG | 0.538258 | 3.4:-66003036 | MS.gene05039:CDS |
| TACTAATTGAGTGTCATGAA+TGG | 0.550839 | 3.4:+66004978 | None:intergenic |
| AATGTGCAGTATGTTAATGC+TGG | 0.551027 | 3.4:-66003204 | MS.gene05039:intron |
| ATCTGCAATGATAATATCAA+GGG | 0.551519 | 3.4:-66003076 | MS.gene05039:CDS |
| GCTACACTTACTGTTCCTGA+TGG | 0.561658 | 3.4:-66003681 | MS.gene05039:CDS |
| ATAAAGCTCCAAAATTCTCA+AGG | 0.564100 | 3.4:-66003147 | MS.gene05039:CDS |
| AAGCTCTGTCCGGCCACCGG+CGG | 0.575424 | 3.4:-66005046 | MS.gene05039:CDS |
| ATGAATGGGTGAGGGAAGGA+TGG | 0.575645 | 3.4:+66004993 | None:intergenic |
| GAATCCTTCTCTGCCGCCGG+TGG | 0.576638 | 3.4:+66005033 | None:intergenic |
| AGGTCCAAGGTTGAAACAAG+TGG | 0.578295 | 3.4:-66003420 | MS.gene05039:CDS |
| CTCGCCGGAGAAGCTCTGTC+CGG | 0.579785 | 3.4:-66005056 | MS.gene05039:CDS |
| ACTAATTGAGTGTCATGAAT+GGG | 0.585550 | 3.4:+66004979 | None:intergenic |
| CCTGTGTTTCAAATATGAAG+GGG | 0.591078 | 3.4:-66003556 | MS.gene05039:CDS |
| AAATTCTCAAGGAGAGCAGT+GGG | 0.598086 | 3.4:-66003136 | MS.gene05039:CDS |
| AAAATTCTCAAGGAGAGCAG+TGG | 0.599450 | 3.4:-66003137 | MS.gene05039:CDS |
| TTGAGTGTCATGAATGGGTG+AGG | 0.601105 | 3.4:+66004984 | None:intergenic |
| ACATGCTTCTGAAAGAGCAA+AGG | 0.603971 | 3.4:-66003364 | MS.gene05039:CDS |
| TGAGTGTCATGAATGGGTGA+GGG | 0.619523 | 3.4:+66004985 | None:intergenic |
| TTCATATTTGAAACACAGGA+AGG | 0.623348 | 3.4:+66003560 | None:intergenic |
| TGTCATGAATGGGTGAGGGA+AGG | 0.626884 | 3.4:+66004989 | None:intergenic |
| GGTCCAAGGTTGAAACAAGT+GGG | 0.636629 | 3.4:-66003419 | MS.gene05039:CDS |
| CGGACAGAGCTTCTCCGGCG+AGG | 0.642740 | 3.4:+66005057 | None:intergenic |
| GGATTTACTGTATTTCAAAG+GGG | 0.674995 | 3.4:-66003054 | MS.gene05039:CDS |
| GAAATGGAACTGAAGAAATG+CGG | 0.682734 | 3.4:-66003648 | MS.gene05039:CDS |
| TCTGCAATGATAATATCAAG+GGG | 0.693916 | 3.4:-66003075 | MS.gene05039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAAATATTTAATCTTTT+TGG | - | chr3.4:66003731-66003750 | MS.gene05039:CDS | 10.0% |
| !! | AATTTAGTCCTATAGTATAA+CGG | - | chr3.4:66004239-66004258 | MS.gene05039:intron | 20.0% |
| !! | ATTGTGATAAAAATATTCTC+AGG | - | chr3.4:66003694-66003713 | MS.gene05039:CDS | 20.0% |
| !!! | AGAATTTTGGAACAAAAATA+AGG | + | chr3.4:66004705-66004724 | None:intergenic | 20.0% |
| !!! | ATAATTTCCCATTAGAATTT+TGG | + | chr3.4:66004718-66004737 | None:intergenic | 20.0% |
| !!! | CATTATGAGATTTTCATAAT+CGG | + | chr3.4:66004202-66004221 | None:intergenic | 20.0% |
| !!! | GAATTTTGGAACAAAAATAA+GGG | + | chr3.4:66004704-66004723 | None:intergenic | 20.0% |
| !!! | GTTTTTTGGATTAAATTCTT+TGG | + | chr3.4:66004682-66004701 | None:intergenic | 20.0% |
| !!! | TATTGGTTAATTTCAAATCA+CGG | + | chr3.4:66003772-66003791 | None:intergenic | 20.0% |
| !!! | TTTGAGACATAAACAAATAT+AGG | + | chr3.4:66003100-66003119 | None:intergenic | 20.0% |
| !!! | TTTTGTTCCAAAATTCTAAT+GGG | - | chr3.4:66004708-66004727 | MS.gene05039:intron | 20.0% |
| !!! | TTTTTGTTCCAAAATTCTAA+TGG | - | chr3.4:66004707-66004726 | MS.gene05039:intron | 20.0% |
| ! | AAGTATCTTTACGATTGTTT+AGG | - | chr3.4:66003943-66003962 | MS.gene05039:intron | 25.0% |
| ! | AATTCTAATGGGAAATTATG+TGG | - | chr3.4:66004719-66004738 | MS.gene05039:intron | 25.0% |
| ! | AATTGAACAAAAGTGAAACT+AGG | - | chr3.4:66004161-66004180 | MS.gene05039:intron | 25.0% |
| ! | AGTATCTTTACGATTGTTTA+GGG | - | chr3.4:66003944-66003963 | MS.gene05039:intron | 25.0% |
| ! | ATCTGCAATGATAATATCAA+GGG | - | chr3.4:66004938-66004957 | MS.gene05039:intron | 25.0% |
| ! | GATGAGTTTATAACAAGATT+TGG | - | chr3.4:66004291-66004310 | MS.gene05039:intron | 25.0% |
| ! | GTAACATATAAGCTAGAATT+TGG | - | chr3.4:66003466-66003485 | MS.gene05039:CDS | 25.0% |
| ! | TCAACTTACTAGAAAAAAGA+AGG | + | chr3.4:66004069-66004088 | None:intergenic | 25.0% |
| ! | TTAGTGTTTCTTTCATACTA+AGG | - | chr3.4:66003305-66003324 | MS.gene05039:CDS | 25.0% |
| ! | TTCAAAACTCAAAGTACAAA+TGG | - | chr3.4:66004537-66004556 | MS.gene05039:intron | 25.0% |
| ! | TTGCAGAATACTATTCTATA+GGG | - | chr3.4:66004424-66004443 | MS.gene05039:intron | 25.0% |
| ! | TTTGCAGAATACTATTCTAT+AGG | - | chr3.4:66004423-66004442 | MS.gene05039:intron | 25.0% |
| !! | AATCTTGTTATAAACTCATC+TGG | + | chr3.4:66004291-66004310 | None:intergenic | 25.0% |
| !! | ACTATAGGACTAAATTTTAG+AGG | + | chr3.4:66004235-66004254 | None:intergenic | 25.0% |
| !!! | AGGATTTTACTTTAAAGCAA+AGG | - | chr3.4:66004744-66004763 | MS.gene05039:intron | 25.0% |
| !!! | GAACAAAAATAAGGGTTTTT+TGG | + | chr3.4:66004696-66004715 | None:intergenic | 25.0% |
| !!! | TCAAATAGTAGTGTTTTTTC+TGG | - | chr3.4:66003115-66003134 | MS.gene05039:CDS | 25.0% |
| !!! | TTTGTACTTTGAGTTTTGAA+TGG | + | chr3.4:66004537-66004556 | None:intergenic | 25.0% |
| AAACAAAGACAAAGAGACTT+TGG | + | chr3.4:66003218-66003237 | None:intergenic | 30.0% | |
| ACTAATTGAGTGTCATGAAT+GGG | + | chr3.4:66003038-66003057 | None:intergenic | 30.0% | |
| AGGATAAACCTTAAACAGAA+CGG | + | chr3.4:66004049-66004068 | None:intergenic | 30.0% | |
| ATAAAGCTCCAAAATTCTCA+AGG | - | chr3.4:66004867-66004886 | MS.gene05039:intron | 30.0% | |
| CAACATGTAGTCACTTATAT+GGG | + | chr3.4:66003536-66003555 | None:intergenic | 30.0% | |
| CATCTGCAATGATAATATCA+AGG | - | chr3.4:66004937-66004956 | MS.gene05039:intron | 30.0% | |
| CATGATTCAATTTCGACATT+CGG | - | chr3.4:66003998-66004017 | MS.gene05039:intron | 30.0% | |
| CTGTTAATCCGTTATACTAT+AGG | + | chr3.4:66004250-66004269 | None:intergenic | 30.0% | |
| GAAACACTAAACAGAAAAAG+CGG | + | chr3.4:66003295-66003314 | None:intergenic | 30.0% | |
| GAATACTATTCTATAGGGTA+TGG | - | chr3.4:66004429-66004448 | MS.gene05039:intron | 30.0% | |
| GGATTTACTGTATTTCAAAG+GGG | - | chr3.4:66004960-66004979 | MS.gene05039:intron | 30.0% | |
| GGGATTTACTGTATTTCAAA+GGG | - | chr3.4:66004959-66004978 | MS.gene05039:intron | 30.0% | |
| GTATCTTTACGATTGTTTAG+GGG | - | chr3.4:66003945-66003964 | MS.gene05039:intron | 30.0% | |
| TACTAATTGAGTGTCATGAA+TGG | + | chr3.4:66003039-66003058 | None:intergenic | 30.0% | |
| TCCTGTGTTTCAAATATGAA+GGG | - | chr3.4:66004457-66004476 | MS.gene05039:intron | 30.0% | |
| TCTGCAATGATAATATCAAG+GGG | - | chr3.4:66004939-66004958 | MS.gene05039:intron | 30.0% | |
| TTCCTGTGTTTCAAATATGA+AGG | - | chr3.4:66004456-66004475 | MS.gene05039:intron | 30.0% | |
| ! | AAACTGTGACATTTGAGTTA+AGG | - | chr3.4:66003794-66003813 | MS.gene05039:intron | 30.0% |
| ! | CAAATGTCACAGTTTTCTAT+TGG | + | chr3.4:66003789-66003808 | None:intergenic | 30.0% |
| ! | GAGTTAGTTTAGTGTATGTT+TGG | - | chr3.4:66003359-66003378 | MS.gene05039:CDS | 30.0% |
| ! | TAAGTTGACTTATCTTCGTT+TGG | - | chr3.4:66004081-66004100 | MS.gene05039:intron | 30.0% |
| ! | TTCATATTTGAAACACAGGA+AGG | + | chr3.4:66004457-66004476 | None:intergenic | 30.0% |
| !! | ACGTTTACTTTTGCAACAAA+TGG | - | chr3.4:66004394-66004413 | MS.gene05039:intron | 30.0% |
| !! | ATAGGACTAAATTTTAGAGG+AGG | + | chr3.4:66004232-66004251 | None:intergenic | 30.0% |
| !! | TAGGACTAAATTTTAGAGGA+GGG | + | chr3.4:66004231-66004250 | None:intergenic | 30.0% |
| !! | TGTATGTTTGGTTTCACTTT+TGG | - | chr3.4:66003371-66003390 | MS.gene05039:CDS | 30.0% |
| !! | TTTGGTTTCACTTTTGGATA+AGG | - | chr3.4:66003377-66003396 | MS.gene05039:CDS | 30.0% |
| !!! | TGAGAATTTTGGAGCTTTAT+AGG | + | chr3.4:66004867-66004886 | None:intergenic | 30.0% |
| AATGTGCAGTATGTTAATGC+TGG | - | chr3.4:66004810-66004829 | MS.gene05039:intron | 35.0% | |
| ATGATGATCCGTTCTGTTTA+AGG | - | chr3.4:66004038-66004057 | MS.gene05039:intron | 35.0% | |
| CAATCGTAAAGATACTTTCG+AGG | + | chr3.4:66003940-66003959 | None:intergenic | 35.0% | |
| CCAACATGTAGTCACTTATA+TGG | + | chr3.4:66003537-66003556 | None:intergenic | 35.0% | |
| CCATATAAGTGACTACATGT+TGG | - | chr3.4:66003534-66003553 | MS.gene05039:CDS | 35.0% | |
| CCTGTGTTTCAAATATGAAG+GGG | - | chr3.4:66004458-66004477 | MS.gene05039:intron | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | - | chr3.4:66004366-66004385 | MS.gene05039:intron | 35.0% | |
| GGGGATTTACTGTATTTCAA+AGG | - | chr3.4:66004958-66004977 | MS.gene05039:intron | 35.0% | |
| TAATGGGAAATTATGTGGTG+AGG | - | chr3.4:66004724-66004743 | MS.gene05039:intron | 35.0% | |
| TATATGAAGCTGTGAACTGT+GGG | - | chr3.4:66003839-66003858 | MS.gene05039:intron | 35.0% | |
| ! | ATTGTGACTTTTAGCACATC+CGG | + | chr3.4:66005038-66005057 | None:intergenic | 35.0% |
| ! | CATTGCAGATGATGATGATT+TGG | + | chr3.4:66004928-66004947 | None:intergenic | 35.0% |
| ! | TCATAATCGGTTCACTTCTA+TGG | + | chr3.4:66004189-66004208 | None:intergenic | 35.0% |
| ! | TGGAGCTTTATAGGAACATT+TGG | + | chr3.4:66004858-66004877 | None:intergenic | 35.0% |
| !! | CTTATCTTCGTTTGGTTCTA+TGG | - | chr3.4:66004089-66004108 | MS.gene05039:intron | 35.0% |
| !!! | ATAGTAGTGTTTTTTCTGGC+TGG | - | chr3.4:66003119-66003138 | MS.gene05039:CDS | 35.0% |
| AAAATTCTCAAGGAGAGCAG+TGG | - | chr3.4:66004877-66004896 | MS.gene05039:intron | 40.0% | |
| AAATTCTCAAGGAGAGCAGT+GGG | - | chr3.4:66004878-66004897 | MS.gene05039:intron | 40.0% | |
| AAGTGGGAGTCATGAGAAAA+AGG | - | chr3.4:66004611-66004630 | MS.gene05039:intron | 40.0% | |
| AGTGGGAGTCATGAGAAAAA+GGG | - | chr3.4:66004612-66004631 | MS.gene05039:intron | 40.0% | |
| AGTGTCACAGTCGTAGAAAA+AGG | - | chr3.4:66004574-66004593 | MS.gene05039:intron | 40.0% | |
| ATTTCCCAATCACAACCATC+AGG | + | chr3.4:66004351-66004370 | None:intergenic | 40.0% | |
| CAGTTCACAGCTTCATATAG+AGG | + | chr3.4:66003838-66003857 | None:intergenic | 40.0% | |
| CTATATGAAGCTGTGAACTG+TGG | - | chr3.4:66003838-66003857 | MS.gene05039:intron | 40.0% | |
| GATTGTTTAGGGGATCTGTT+TGG | - | chr3.4:66003955-66003974 | MS.gene05039:intron | 40.0% | |
| TGAGCTGATCAAAAAGAAGC+CGG | - | chr3.4:66005016-66005035 | MS.gene05039:CDS | 40.0% | |
| TGATGGTTGTGATTGGGAAA+TGG | - | chr3.4:66004350-66004369 | MS.gene05039:intron | 40.0% | |
| TGTTCCTGATGGTTGTGATT+GGG | - | chr3.4:66004344-66004363 | MS.gene05039:intron | 40.0% | |
| ! | ACATGCTTCTGAAAGAGCAA+AGG | - | chr3.4:66004650-66004669 | MS.gene05039:intron | 40.0% |
| ! | ACTGCTCTCCTTGAGAATTT+TGG | + | chr3.4:66004878-66004897 | None:intergenic | 40.0% |
| ! | CCCCTTCATATTTGAAACAC+AGG | + | chr3.4:66004461-66004480 | None:intergenic | 40.0% |
| ACTCCCACTTGTTTCAACCT+TGG | + | chr3.4:66004601-66004620 | None:intergenic | 45.0% | |
| AGGTCCAAGGTTGAAACAAG+TGG | - | chr3.4:66004594-66004613 | MS.gene05039:intron | 45.0% | |
| CAGTCGTAGAAAAAGGTCCA+AGG | - | chr3.4:66004581-66004600 | MS.gene05039:intron | 45.0% | |
| CTGTTCCTGATGGTTGTGAT+TGG | - | chr3.4:66004343-66004362 | MS.gene05039:intron | 45.0% | |
| GCTACACTTACTGTTCCTGA+TGG | - | chr3.4:66004333-66004352 | MS.gene05039:intron | 45.0% | |
| GGTCCAAGGTTGAAACAAGT+GGG | - | chr3.4:66004595-66004614 | MS.gene05039:intron | 45.0% | |
| TGAGTGTCATGAATGGGTGA+GGG | + | chr3.4:66003032-66003051 | None:intergenic | 45.0% | |
| TTGAGTGTCATGAATGGGTG+AGG | + | chr3.4:66003033-66003052 | None:intergenic | 45.0% | |
| AGGGGCAACAATCTGTCTCA+TGG | - | chr3.4:66004978-66004997 | MS.gene05039:intron | 50.0% | |
| ATGAATGGGTGAGGGAAGGA+TGG | + | chr3.4:66003024-66003043 | None:intergenic | 50.0% | |
| TGTCATGAATGGGTGAGGGA+AGG | + | chr3.4:66003028-66003047 | None:intergenic | 50.0% | |
| TTAGAATCCTTCTCTGCCGC+CGG | + | chr3.4:66002987-66003006 | None:intergenic | 50.0% | |
| CTCGCCGGAGAAGCTCTGTC+CGG | - | chr3.4:66002958-66002977 | MS.gene05039:CDS | 65.0% | |
| GAATCCTTCTCTGCCGCCGG+TGG | + | chr3.4:66002984-66003003 | None:intergenic | 65.0% | |
| GAGAAGCTCTGTCCGGCCAC+CGG | - | chr3.4:66002965-66002984 | MS.gene05039:CDS | 65.0% | |
| GTGGCCGGACAGAGCTTCTC+CGG | + | chr3.4:66002965-66002984 | None:intergenic | 65.0% | |
| AAGCTCTGTCCGGCCACCGG+CGG | - | chr3.4:66002968-66002987 | MS.gene05039:CDS | 70.0% | |
| CGGACAGAGCTTCTCCGGCG+AGG | + | chr3.4:66002960-66002979 | None:intergenic | 70.0% | |
| CCTTCTCTGCCGCCGGTGGC+CGG | + | chr3.4:66002980-66002999 | None:intergenic | 75.0% | |
| ! | CCGGCCACCGGCGGCAGAGA+AGG | - | chr3.4:66002977-66002996 | MS.gene05039:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66002951 | 66005085 | 66002951 | ID=MS.gene05039 |
| chr3.4 | mRNA | 66002951 | 66005085 | 66002951 | ID=MS.gene05039.t1;Parent=MS.gene05039 |
| chr3.4 | exon | 66004981 | 66005085 | 66004981 | ID=MS.gene05039.t1.exon1;Parent=MS.gene05039.t1 |
| chr3.4 | CDS | 66004981 | 66005085 | 66004981 | ID=cds.MS.gene05039.t1;Parent=MS.gene05039.t1 |
| chr3.4 | exon | 66003296 | 66003754 | 66003296 | ID=MS.gene05039.t1.exon2;Parent=MS.gene05039.t1 |
| chr3.4 | CDS | 66003296 | 66003754 | 66003296 | ID=cds.MS.gene05039.t1;Parent=MS.gene05039.t1 |
| chr3.4 | exon | 66002951 | 66003217 | 66002951 | ID=MS.gene05039.t1.exon3;Parent=MS.gene05039.t1 |
| chr3.4 | CDS | 66002951 | 66003217 | 66002951 | ID=cds.MS.gene05039.t1;Parent=MS.gene05039.t1 |
| Gene Sequence |
| Protein sequence |
