Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050393.t1 | XP_003595132.1 | 92.6 | 215 | 16 | 0 | 1 | 215 | 1 | 215 | 2.20E-102 | 381.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050393.t1 | Q05466 | 42.7 | 185 | 103 | 1 | 28 | 209 | 72 | 256 | 5.6e-30 | 132.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050393.t1 | G7IIE0 | 92.6 | 215 | 16 | 0 | 1 | 215 | 1 | 215 | 1.6e-102 | 381.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene050393.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050393.t1 | MTR_2g038625 | 97.674 | 215 | 5 | 0 | 1 | 215 | 1 | 215 | 2.44e-154 | 426 |
MS.gene050393.t1 | MTR_2g038580 | 97.674 | 215 | 5 | 0 | 1 | 215 | 1 | 215 | 2.44e-154 | 426 |
MS.gene050393.t1 | MTR_4g100550 | 44.318 | 176 | 98 | 0 | 37 | 212 | 75 | 250 | 8.64e-42 | 143 |
MS.gene050393.t1 | MTR_8g006705 | 60.177 | 113 | 45 | 0 | 82 | 194 | 146 | 258 | 1.77e-40 | 140 |
MS.gene050393.t1 | MTR_5g014890 | 57.143 | 126 | 53 | 1 | 72 | 197 | 113 | 237 | 1.87e-40 | 139 |
MS.gene050393.t1 | MTR_5g013010 | 52.308 | 130 | 62 | 0 | 70 | 199 | 124 | 253 | 2.76e-40 | 139 |
MS.gene050393.t1 | MTR_7g093430 | 54.676 | 139 | 59 | 2 | 60 | 195 | 135 | 272 | 3.76e-40 | 139 |
MS.gene050393.t1 | MTR_1g054285 | 55.556 | 135 | 50 | 3 | 66 | 195 | 137 | 266 | 1.61e-39 | 137 |
MS.gene050393.t1 | MTR_4g097600 | 55.303 | 132 | 56 | 2 | 65 | 195 | 110 | 239 | 1.62e-39 | 137 |
MS.gene050393.t1 | MTR_2g061030 | 60.000 | 115 | 43 | 2 | 82 | 195 | 200 | 312 | 2.63e-37 | 132 |
MS.gene050393.t1 | MTR_1g017090 | 49.032 | 155 | 75 | 3 | 49 | 199 | 94 | 248 | 8.38e-36 | 127 |
MS.gene050393.t1 | MTR_4g084750 | 50.847 | 118 | 53 | 1 | 82 | 194 | 65 | 182 | 4.22e-34 | 120 |
MS.gene050393.t1 | MTR_4g126900 | 41.827 | 208 | 101 | 5 | 11 | 201 | 7 | 211 | 1.46e-33 | 120 |
MS.gene050393.t1 | MTR_3g103590 | 55.118 | 127 | 54 | 2 | 69 | 195 | 133 | 256 | 7.99e-31 | 115 |
MS.gene050393.t1 | MTR_5g013010 | 57.812 | 64 | 27 | 0 | 70 | 133 | 124 | 187 | 4.47e-16 | 73.9 |
MS.gene050393.t1 | MTR_1g061660 | 34.091 | 132 | 84 | 2 | 40 | 170 | 18 | 147 | 1.32e-13 | 67.8 |
MS.gene050393.t1 | MTR_5g039000 | 37.273 | 110 | 66 | 1 | 60 | 169 | 58 | 164 | 6.76e-13 | 66.2 |
MS.gene050393.t1 | MTR_6g007647 | 42.045 | 88 | 51 | 0 | 82 | 169 | 33 | 120 | 2.45e-12 | 64.7 |
MS.gene050393.t1 | MTR_6g007647 | 42.045 | 88 | 51 | 0 | 82 | 169 | 67 | 154 | 3.59e-12 | 64.3 |
MS.gene050393.t1 | MTR_7g010020 | 42.268 | 97 | 52 | 1 | 79 | 171 | 77 | 173 | 4.28e-12 | 63.9 |
MS.gene050393.t1 | MTR_3g080100 | 42.105 | 95 | 48 | 1 | 82 | 169 | 20 | 114 | 5.16e-12 | 63.2 |
MS.gene050393.t1 | MTR_7g103340 | 32.667 | 150 | 91 | 4 | 27 | 169 | 4 | 150 | 5.31e-12 | 63.2 |
MS.gene050393.t1 | MTR_5g038280 | 40.000 | 95 | 50 | 1 | 81 | 168 | 86 | 180 | 5.51e-12 | 64.3 |
MS.gene050393.t1 | MTR_3g080100 | 42.105 | 95 | 48 | 1 | 82 | 169 | 59 | 153 | 8.43e-12 | 63.2 |
MS.gene050393.t1 | MTR_8g089895 | 40.336 | 119 | 58 | 4 | 76 | 181 | 43 | 161 | 1.40e-11 | 62.8 |
MS.gene050393.t1 | MTR_4g107650 | 40.909 | 88 | 52 | 0 | 82 | 169 | 95 | 182 | 5.07e-11 | 61.6 |
MS.gene050393.t1 | MTR_8g468210 | 36.697 | 109 | 65 | 2 | 60 | 168 | 59 | 163 | 5.25e-11 | 61.2 |
MS.gene050393.t1 | MTR_8g469430 | 41.053 | 95 | 49 | 1 | 81 | 168 | 88 | 182 | 5.33e-11 | 61.2 |
MS.gene050393.t1 | MTR_6g011610 | 40.196 | 102 | 57 | 1 | 72 | 169 | 63 | 164 | 6.55e-11 | 60.5 |
MS.gene050393.t1 | MTR_6g011610 | 40.196 | 102 | 57 | 1 | 72 | 169 | 82 | 183 | 6.99e-11 | 60.8 |
MS.gene050393.t1 | MTR_3g086790 | 36.441 | 118 | 65 | 3 | 63 | 173 | 43 | 157 | 9.91e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050393.t1 | AT4G16780 | 48.387 | 155 | 80 | 0 | 55 | 209 | 102 | 256 | 6.35e-43 | 146 |
MS.gene050393.t1 | AT4G17460 | 49.664 | 149 | 69 | 1 | 51 | 199 | 110 | 252 | 2.08e-41 | 142 |
MS.gene050393.t1 | AT5G47370 | 56.780 | 118 | 51 | 0 | 82 | 199 | 130 | 247 | 9.97e-40 | 137 |
MS.gene050393.t1 | AT3G60390 | 54.918 | 122 | 55 | 0 | 73 | 194 | 153 | 274 | 1.72e-39 | 138 |
MS.gene050393.t1 | AT5G06710 | 55.645 | 124 | 54 | 1 | 72 | 195 | 180 | 302 | 2.93e-39 | 138 |
MS.gene050393.t1 | AT4G37790 | 56.349 | 126 | 52 | 2 | 72 | 195 | 114 | 238 | 2.31e-38 | 134 |
MS.gene050393.t1 | AT2G44910 | 57.018 | 114 | 49 | 0 | 82 | 195 | 163 | 276 | 3.11e-38 | 135 |
MS.gene050393.t1 | AT2G22800 | 54.762 | 126 | 54 | 2 | 72 | 195 | 101 | 225 | 5.58e-37 | 130 |
MS.gene050393.t1 | AT2G01430 | 54.386 | 114 | 49 | 1 | 82 | 195 | 139 | 249 | 5.32e-35 | 125 |
MS.gene050393.t1 | AT1G70920 | 50.000 | 124 | 54 | 2 | 72 | 195 | 59 | 174 | 5.12e-29 | 108 |
MS.gene050393.t1 | AT1G70920 | 50.000 | 124 | 54 | 2 | 72 | 195 | 29 | 144 | 5.91e-29 | 107 |
MS.gene050393.t1 | AT5G06710 | 61.290 | 62 | 24 | 0 | 72 | 133 | 180 | 241 | 2.19e-18 | 81.6 |
MS.gene050393.t1 | AT5G03790 | 42.574 | 101 | 58 | 0 | 70 | 170 | 65 | 165 | 1.62e-15 | 73.2 |
MS.gene050393.t1 | AT2G01430 | 58.182 | 55 | 23 | 0 | 82 | 136 | 139 | 193 | 3.60e-14 | 68.9 |
MS.gene050393.t1 | AT3G01220 | 37.903 | 124 | 73 | 1 | 52 | 171 | 57 | 180 | 2.96e-13 | 67.4 |
MS.gene050393.t1 | AT5G03790 | 41.053 | 95 | 56 | 0 | 70 | 164 | 65 | 159 | 1.28e-12 | 64.3 |
MS.gene050393.t1 | AT4G36740 | 37.374 | 99 | 62 | 0 | 70 | 168 | 44 | 142 | 2.17e-12 | 64.3 |
MS.gene050393.t1 | AT4G36740 | 37.374 | 99 | 62 | 0 | 70 | 168 | 43 | 141 | 2.19e-12 | 64.3 |
MS.gene050393.t1 | AT2G18550 | 39.000 | 100 | 61 | 0 | 69 | 168 | 48 | 147 | 2.76e-12 | 63.9 |
MS.gene050393.t1 | AT3G01470 | 47.222 | 72 | 38 | 0 | 82 | 153 | 68 | 139 | 5.68e-12 | 63.9 |
MS.gene050393.t1 | AT1G26960 | 40.909 | 88 | 52 | 0 | 82 | 169 | 71 | 158 | 1.76e-11 | 62.4 |
MS.gene050393.t1 | AT2G46680 | 39.394 | 99 | 56 | 1 | 85 | 179 | 35 | 133 | 9.86e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATACCTTGCTCTTCTGTTC+TGG | 0.227517 | 2.3:-50291326 | None:intergenic |
GTTCAACATGCAAGAAAATA+TGG | 0.268795 | 2.3:+50292414 | MS.gene050393:CDS |
GATGATTGAGTTGTGTTTGA+TGG | 0.272598 | 2.3:-50292368 | None:intergenic |
TAGCCTTTAATCTAACTCTA+TGG | 0.303061 | 2.3:-50292480 | None:intergenic |
AATCATCTAAAGCTGCAAAT+TGG | 0.315157 | 2.3:+50292384 | MS.gene050393:CDS |
CTTAATCTTAAACTTGGATT+AGG | 0.319965 | 2.3:+50290780 | MS.gene050393:CDS |
CCATTGATTTGAACCATGAT+AGG | 0.325695 | 2.3:+50290859 | MS.gene050393:CDS |
GCACCATAGAGTTAGATTAA+AGG | 0.328032 | 2.3:+50292477 | MS.gene050393:CDS |
GGTTGATTCAAAAGAAGAAT+TGG | 0.345182 | 2.3:+50290836 | MS.gene050393:CDS |
AACTAAGTGAGGAGAATCTT+AGG | 0.353207 | 2.3:+50292303 | MS.gene050393:CDS |
AGCAAAGACAGGTTGAAGTT+TGG | 0.373329 | 2.3:+50291301 | MS.gene050393:CDS |
TGAGCACCCGTTGTTGTCAT+TGG | 0.382575 | 2.3:-50290958 | None:intergenic |
TTTCTTGCATGTTGAACAAA+TGG | 0.398813 | 2.3:-50292408 | None:intergenic |
AATAACAACATCCTCCTCAT+TGG | 0.419038 | 2.3:-50292441 | None:intergenic |
TCAATTCATTTGCCCTATCA+TGG | 0.421387 | 2.3:-50290872 | None:intergenic |
AATTGTGCTGTGACGCTTGA+AGG | 0.428719 | 2.3:-50291027 | None:intergenic |
ATAACAACATCCTCCTCATT+GGG | 0.441004 | 2.3:-50292440 | None:intergenic |
ACACCACCAATGACAACAAC+GGG | 0.443518 | 2.3:+50290952 | MS.gene050393:CDS |
TTGGATCTTAATCTTAAACT+TGG | 0.447542 | 2.3:+50290774 | MS.gene050393:CDS |
AAACAATGTGAACAAACCTT+TGG | 0.458446 | 2.3:+50290815 | MS.gene050393:CDS |
ATTGAATTTAAAGCAAAGAC+AGG | 0.478696 | 2.3:+50291290 | MS.gene050393:CDS |
CCTATCATGGTTCAAATCAA+TGG | 0.487751 | 2.3:-50290859 | None:intergenic |
AGGTGAACTGTATATATTTG+AGG | 0.516757 | 2.3:+50292267 | MS.gene050393:CDS |
GGAGAATCTTAGGTTGAAGA+AGG | 0.518622 | 2.3:+50292313 | MS.gene050393:CDS |
GCACCCGTTGTTGTCATTGG+TGG | 0.522365 | 2.3:-50290955 | None:intergenic |
GAACTGCGTGCATTAAAAGT+TGG | 0.525263 | 2.3:+50292344 | MS.gene050393:CDS |
CATTGATTTGAACCATGATA+GGG | 0.530963 | 2.3:+50290860 | MS.gene050393:CDS |
AATCTAACTCTATGGTGCTG+TGG | 0.578396 | 2.3:-50292472 | None:intergenic |
ACGGGTGCTCAAAGAAATTG+AGG | 0.587563 | 2.3:+50290970 | MS.gene050393:CDS |
TCATCACATGGCATGCACGT+TGG | 0.602607 | 2.3:+50290755 | MS.gene050393:CDS |
GAAAATATGGAAGCCCAATG+AGG | 0.640653 | 2.3:+50292427 | MS.gene050393:CDS |
GACACCACCAATGACAACAA+CGG | 0.643008 | 2.3:+50290951 | MS.gene050393:CDS |
GGTTCCAGAACAGAAGAGCA+AGG | 0.646687 | 2.3:+50291322 | MS.gene050393:CDS |
AATATGGAAGCCCAATGAGG+AGG | 0.651470 | 2.3:+50292430 | MS.gene050393:CDS |
ATGATCTTGATCATCATCCA+TGG | 0.675243 | 2.3:-50290736 | None:intergenic |
ATGTCATGAGAAACTAAGTG+AGG | 0.678157 | 2.3:+50292292 | MS.gene050393:CDS |
TGATGATCAAGATCATCACA+TGG | 0.696569 | 2.3:+50290743 | MS.gene050393:CDS |
GACTAAGCTGAAACAAACAG+AGG | 0.748545 | 2.3:+50292247 | MS.gene050393:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTAATTATTAATTTTA+TGG | + | chr2.3:50291113-50291132 | MS.gene050393:intron | 0.0% |
!! | TTTCATTTATCAAAATTTAA+GGG | + | chr2.3:50291207-50291226 | MS.gene050393:intron | 10.0% |
!!! | TTTATTATTTTTTTCTTTCA+TGG | + | chr2.3:50291388-50291407 | MS.gene050393:intron | 10.0% |
!!! | TTTTCATTTATCAAAATTTA+AGG | + | chr2.3:50291206-50291225 | MS.gene050393:intron | 10.0% |
!! | ATAGTCAACAAATAATAAAT+TGG | - | chr2.3:50291608-50291627 | None:intergenic | 15.0% |
!! | ATTCAAAGAGTAATATATTA+CGG | - | chr2.3:50291057-50291076 | None:intergenic | 15.0% |
!!! | GAATTGATTTTTTTTTGTTT+CGG | + | chr2.3:50291229-50291248 | MS.gene050393:intron | 15.0% |
!!! | TTTCAAAAAATAATTTGTGT+TGG | + | chr2.3:50291574-50291593 | MS.gene050393:intron | 15.0% |
!! | ATAGTGCAAATATTCTAAAT+AGG | - | chr2.3:50291909-50291928 | None:intergenic | 20.0% |
!!! | AAATTATTTTTGCAAAAACG+AGG | - | chr2.3:50291645-50291664 | None:intergenic | 20.0% |
!!! | AATTATACAATTGACTTTTC+AGG | + | chr2.3:50292225-50292244 | MS.gene050393:intron | 20.0% |
!!! | ATGAAATTTTATAACTTGAG+TGG | - | chr2.3:50291713-50291732 | None:intergenic | 20.0% |
!!! | ATGAATCATTTGGTTTAATT+GGG | + | chr2.3:50291346-50291365 | MS.gene050393:intron | 20.0% |
!!! | TATGAATCATTTGGTTTAAT+TGG | + | chr2.3:50291345-50291364 | MS.gene050393:intron | 20.0% |
!!! | TTAAGTTTAAAATTGTGCAT+TGG | + | chr2.3:50292071-50292090 | MS.gene050393:intron | 20.0% |
! | CTAAATAGGTCAAGTAATAT+GGG | - | chr2.3:50291895-50291914 | None:intergenic | 25.0% |
! | CTTAATCTTAAACTTGGATT+AGG | + | chr2.3:50290780-50290799 | MS.gene050393:CDS | 25.0% |
! | TCTAAATAGGTCAAGTAATA+TGG | - | chr2.3:50291896-50291915 | None:intergenic | 25.0% |
! | TTGACTGTTATATGAAATAG+AGG | + | chr2.3:50291842-50291861 | MS.gene050393:intron | 25.0% |
! | TTGGATCTTAATCTTAAACT+TGG | + | chr2.3:50290774-50290793 | MS.gene050393:CDS | 25.0% |
!! | ATTGAATTTAAAGCAAAGAC+AGG | + | chr2.3:50291290-50291309 | MS.gene050393:CDS | 25.0% |
!! | TTATGGAAGCTAATTTTGTA+TGG | + | chr2.3:50291130-50291149 | MS.gene050393:intron | 25.0% |
AAACAATGTGAACAAACCTT+TGG | + | chr2.3:50290815-50290834 | MS.gene050393:CDS | 30.0% | |
AGGTGAACTGTATATATTTG+AGG | + | chr2.3:50292267-50292286 | MS.gene050393:CDS | 30.0% | |
GTTCAACATGCAAGAAAATA+TGG | + | chr2.3:50292414-50292433 | MS.gene050393:CDS | 30.0% | |
TCAACTAGGTCAAGTAATAT+GGG | + | chr2.3:50292108-50292127 | MS.gene050393:intron | 30.0% | |
TTTCTTGCATGTTGAACAAA+TGG | - | chr2.3:50292411-50292430 | None:intergenic | 30.0% | |
! | AATCATCTAAAGCTGCAAAT+TGG | + | chr2.3:50292384-50292403 | MS.gene050393:CDS | 30.0% |
! | GGTTGATTCAAAAGAAGAAT+TGG | + | chr2.3:50290836-50290855 | MS.gene050393:CDS | 30.0% |
! | TCTTCTTTTGAATCAACCAA+AGG | - | chr2.3:50290834-50290853 | None:intergenic | 30.0% |
!! | CATTGATTTGAACCATGATA+GGG | + | chr2.3:50290860-50290879 | MS.gene050393:CDS | 30.0% |
AACTAAGTGAGGAGAATCTT+AGG | + | chr2.3:50292303-50292322 | MS.gene050393:CDS | 35.0% | |
AATAACAACATCCTCCTCAT+TGG | - | chr2.3:50292444-50292463 | None:intergenic | 35.0% | |
AATTTCTGACGTAGTAGTCA+GGG | - | chr2.3:50291538-50291557 | None:intergenic | 35.0% | |
AGAGCAAGGTATGAATCATT+TGG | + | chr2.3:50291336-50291355 | MS.gene050393:intron | 35.0% | |
ATAACAACATCCTCCTCATT+GGG | - | chr2.3:50292443-50292462 | None:intergenic | 35.0% | |
ATAGGTCAAGTAATATGGGA+CGG | - | chr2.3:50291891-50291910 | None:intergenic | 35.0% | |
ATGTCATGAGAAACTAAGTG+AGG | + | chr2.3:50292292-50292311 | MS.gene050393:CDS | 35.0% | |
CCTATCATGGTTCAAATCAA+TGG | - | chr2.3:50290862-50290881 | None:intergenic | 35.0% | |
GACTGTTGAACACTACAATT+TGG | + | chr2.3:50292150-50292169 | MS.gene050393:intron | 35.0% | |
GTCAACTAGGTCAAGTAATA+TGG | + | chr2.3:50292107-50292126 | MS.gene050393:intron | 35.0% | |
TAGTAGTCAGGGTAAAATGA+TGG | - | chr2.3:50291527-50291546 | None:intergenic | 35.0% | |
TCAATTCATTTGCCCTATCA+TGG | - | chr2.3:50290875-50290894 | None:intergenic | 35.0% | |
TGATCAGTTGGATTTCTTCT+TGG | + | chr2.3:50291466-50291485 | MS.gene050393:intron | 35.0% | |
TGATGATCAAGATCATCACA+TGG | + | chr2.3:50290743-50290762 | MS.gene050393:CDS | 35.0% | |
TTTACATGCAGGCTCAAAAA+CGG | + | chr2.3:50291253-50291272 | MS.gene050393:intron | 35.0% | |
! | ACTTTTCACTTCTGATCAGT+TGG | + | chr2.3:50291454-50291473 | MS.gene050393:intron | 35.0% |
! | GATGATTGAGTTGTGTTTGA+TGG | - | chr2.3:50292371-50292390 | None:intergenic | 35.0% |
! | TTTGTTTCGGTTTTACATGC+AGG | + | chr2.3:50291242-50291261 | MS.gene050393:intron | 35.0% |
!! | CCATTGATTTGAACCATGAT+AGG | + | chr2.3:50290859-50290878 | MS.gene050393:CDS | 35.0% |
CTAGGTCAAGTAATATGGGA+CGG | + | chr2.3:50292112-50292131 | MS.gene050393:intron | 40.0% | |
GAAAATATGGAAGCCCAATG+AGG | + | chr2.3:50292427-50292446 | MS.gene050393:CDS | 40.0% | |
GAACTGCGTGCATTAAAAGT+TGG | + | chr2.3:50292344-50292363 | MS.gene050393:CDS | 40.0% | |
GAATTTCTGACGTAGTAGTC+AGG | - | chr2.3:50291539-50291558 | None:intergenic | 40.0% | |
GACTAAGCTGAAACAAACAG+AGG | + | chr2.3:50292247-50292266 | MS.gene050393:CDS | 40.0% | |
TTACATGCAGGCTCAAAAAC+GGG | + | chr2.3:50291254-50291273 | MS.gene050393:intron | 40.0% | |
! | AATCTAACTCTATGGTGCTG+TGG | - | chr2.3:50292475-50292494 | None:intergenic | 40.0% |
! | AGCAAAGACAGGTTGAAGTT+TGG | + | chr2.3:50291301-50291320 | MS.gene050393:CDS | 40.0% |
!! | GGAGAATCTTAGGTTGAAGA+AGG | + | chr2.3:50292313-50292332 | MS.gene050393:CDS | 40.0% |
!!! | CTTGAAGGCATTTTCAAGCT+TGG | - | chr2.3:50291015-50291034 | None:intergenic | 40.0% |
AATATGGAAGCCCAATGAGG+AGG | + | chr2.3:50292430-50292449 | MS.gene050393:CDS | 45.0% | |
AATTGTGCTGTGACGCTTGA+AGG | - | chr2.3:50291030-50291049 | None:intergenic | 45.0% | |
ACACCACCAATGACAACAAC+GGG | + | chr2.3:50290952-50290971 | MS.gene050393:CDS | 45.0% | |
ACGGGTGCTCAAAGAAATTG+AGG | + | chr2.3:50290970-50290989 | MS.gene050393:CDS | 45.0% | |
CATACCTTGCTCTTCTGTTC+TGG | - | chr2.3:50291329-50291348 | None:intergenic | 45.0% | |
GACACCACCAATGACAACAA+CGG | + | chr2.3:50290951-50290970 | MS.gene050393:CDS | 45.0% | |
GTCAAGTAATATGGGACGGA+GGG | + | chr2.3:50292116-50292135 | MS.gene050393:intron | 45.0% | |
GTCAAGTAATATGGGACGGA+GGG | - | chr2.3:50292135-50292116 | None:intergenic | 45.0% | |
! | TTGTGCATTGGCATACGTGA+CGG | + | chr2.3:50292083-50292102 | MS.gene050393:intron | 45.0% |
!!! | TTTAATGTAATTTTAATATT+AGG | + | chr2.3:50291683-50291702 | MS.gene050393:intron | 5.0% |
GGTCAAGTAATATGGGACGG+AGG | + | chr2.3:50292115-50292134 | MS.gene050393:intron | 50.0% | |
GGTCAAGTAATATGGGACGG+AGG | - | chr2.3:50292134-50292115 | None:intergenic | 50.0% | |
GGTTCCAGAACAGAAGAGCA+AGG | + | chr2.3:50291322-50291341 | MS.gene050393:CDS | 50.0% | |
TCATCACATGGCATGCACGT+TGG | + | chr2.3:50290755-50290774 | MS.gene050393:CDS | 50.0% | |
TGAGCACCCGTTGTTGTCAT+TGG | - | chr2.3:50290961-50290980 | None:intergenic | 50.0% | |
! | CATACGTGACGGAGTCAACT+AGG | + | chr2.3:50292094-50292113 | MS.gene050393:intron | 50.0% |
! | TCAAAAACGGGCACTTGCTG+AGG | + | chr2.3:50291266-50291285 | MS.gene050393:CDS | 50.0% |
GCACCCGTTGTTGTCATTGG+TGG | - | chr2.3:50290958-50290977 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 50290738 | 50292496 | 50290738 | ID=MS.gene050393 |
chr2.3 | mRNA | 50290738 | 50292496 | 50290738 | ID=MS.gene050393.t1;Parent=MS.gene050393 |
chr2.3 | exon | 50290738 | 50291055 | 50290738 | ID=MS.gene050393.t1.exon1;Parent=MS.gene050393.t1 |
chr2.3 | CDS | 50290738 | 50291055 | 50290738 | ID=cds.MS.gene050393.t1;Parent=MS.gene050393.t1 |
chr2.3 | exon | 50291264 | 50291343 | 50291264 | ID=MS.gene050393.t1.exon2;Parent=MS.gene050393.t1 |
chr2.3 | CDS | 50291264 | 50291343 | 50291264 | ID=cds.MS.gene050393.t1;Parent=MS.gene050393.t1 |
chr2.3 | exon | 50292247 | 50292496 | 50292247 | ID=MS.gene050393.t1.exon3;Parent=MS.gene050393.t1 |
chr2.3 | CDS | 50292247 | 50292496 | 50292247 | ID=cds.MS.gene050393.t1;Parent=MS.gene050393.t1 |
Gene Sequence |
Protein sequence |