Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05041.t1 | XP_003598025.2 | 75.9 | 523 | 107 | 4 | 1 | 506 | 20 | 540 | 3.00E-222 | 781.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05041.t1 | Q8L3W1 | 27.5 | 338 | 156 | 5 | 255 | 506 | 6 | 340 | 2.8e-27 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05041.t1 | G7IYE4 | 75.9 | 523 | 107 | 4 | 1 | 506 | 20 | 540 | 2.2e-222 | 781.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05041.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05041.t1 | MTR_3g005420 | 75.908 | 523 | 107 | 4 | 1 | 506 | 20 | 540 | 0.0 | 788 |
| MS.gene05041.t1 | MTR_3g005420 | 69.790 | 523 | 104 | 5 | 1 | 506 | 1 | 486 | 0.0 | 706 |
| MS.gene05041.t1 | MTR_3g005440 | 77.427 | 443 | 50 | 4 | 36 | 462 | 34 | 442 | 0.0 | 671 |
| MS.gene05041.t1 | MTR_3g005440 | 46.586 | 249 | 82 | 3 | 264 | 510 | 29 | 228 | 2.57e-58 | 200 |
| MS.gene05041.t1 | MTR_3g005440 | 46.341 | 205 | 65 | 4 | 18 | 184 | 237 | 434 | 1.43e-44 | 163 |
| MS.gene05041.t1 | MTR_3g005460 | 61.090 | 532 | 170 | 7 | 1 | 506 | 1 | 521 | 0.0 | 600 |
| MS.gene05041.t1 | MTR_3g005495 | 55.301 | 481 | 163 | 9 | 37 | 500 | 28 | 473 | 1.61e-167 | 482 |
| MS.gene05041.t1 | MTR_3g005495 | 45.417 | 240 | 103 | 7 | 18 | 232 | 238 | 474 | 1.61e-47 | 171 |
| MS.gene05041.t1 | MTR_3g005490 | 66.023 | 259 | 77 | 2 | 250 | 507 | 16 | 264 | 1.19e-119 | 352 |
| MS.gene05041.t1 | MTR_3g005490 | 54.980 | 251 | 83 | 5 | 5 | 226 | 4 | 253 | 3.93e-77 | 243 |
| MS.gene05041.t1 | MTR_5g070440 | 66.148 | 257 | 87 | 0 | 250 | 506 | 16 | 272 | 9.45e-117 | 345 |
| MS.gene05041.t1 | MTR_5g070440 | 52.652 | 264 | 85 | 4 | 1 | 226 | 1 | 262 | 9.52e-78 | 245 |
| MS.gene05041.t1 | MTR_3g005480 | 64.479 | 259 | 80 | 2 | 250 | 506 | 16 | 264 | 4.39e-116 | 343 |
| MS.gene05041.t1 | MTR_3g005480 | 53.571 | 252 | 86 | 5 | 5 | 226 | 4 | 254 | 1.23e-73 | 234 |
| MS.gene05041.t1 | MTR_3g098790 | 29.352 | 293 | 164 | 6 | 254 | 505 | 12 | 302 | 6.52e-28 | 114 |
| MS.gene05041.t1 | MTR_1g015350 | 39.779 | 181 | 37 | 4 | 298 | 478 | 58 | 166 | 9.87e-27 | 106 |
| MS.gene05041.t1 | MTR_1g015350 | 39.610 | 154 | 52 | 4 | 65 | 215 | 58 | 173 | 3.76e-20 | 88.2 |
| MS.gene05041.t1 | MTR_7g050710 | 27.974 | 311 | 175 | 7 | 247 | 508 | 3 | 313 | 1.78e-26 | 110 |
| MS.gene05041.t1 | MTR_5g044670 | 26.645 | 304 | 181 | 8 | 247 | 509 | 8 | 310 | 3.39e-26 | 109 |
| MS.gene05041.t1 | MTR_8g103940 | 28.956 | 297 | 158 | 9 | 255 | 502 | 39 | 331 | 4.71e-26 | 111 |
| MS.gene05041.t1 | MTR_1g034240 | 45.455 | 99 | 54 | 0 | 255 | 353 | 7 | 105 | 7.47e-26 | 110 |
| MS.gene05041.t1 | MTR_1g034240 | 37.662 | 77 | 45 | 2 | 23 | 96 | 7 | 83 | 6.50e-13 | 70.9 |
| MS.gene05041.t1 | MTR_7g050560 | 29.078 | 282 | 170 | 4 | 254 | 505 | 12 | 293 | 9.38e-26 | 107 |
| MS.gene05041.t1 | MTR_3g061340 | 29.412 | 272 | 158 | 7 | 255 | 501 | 12 | 274 | 2.50e-25 | 105 |
| MS.gene05041.t1 | MTR_3g061310 | 28.521 | 284 | 158 | 7 | 254 | 501 | 11 | 285 | 4.46e-25 | 105 |
| MS.gene05041.t1 | MTR_7g050580 | 28.475 | 295 | 166 | 8 | 248 | 505 | 7 | 293 | 6.12e-25 | 105 |
| MS.gene05041.t1 | MTR_3g061320 | 29.391 | 279 | 156 | 8 | 254 | 501 | 11 | 279 | 6.97e-25 | 104 |
| MS.gene05041.t1 | MTR_3g061350 | 26.241 | 282 | 164 | 6 | 255 | 501 | 12 | 284 | 4.72e-23 | 99.4 |
| MS.gene05041.t1 | MTR_1g108780 | 28.283 | 297 | 148 | 11 | 270 | 511 | 12 | 298 | 8.26e-23 | 101 |
| MS.gene05041.t1 | MTR_3g061370 | 29.032 | 279 | 166 | 7 | 252 | 501 | 6 | 281 | 1.59e-22 | 97.8 |
| MS.gene05041.t1 | MTR_4g068320 | 41.176 | 102 | 60 | 0 | 252 | 353 | 3 | 104 | 1.40e-21 | 97.4 |
| MS.gene05041.t1 | MTR_1g034210 | 39.806 | 103 | 62 | 0 | 255 | 357 | 7 | 109 | 1.41e-20 | 93.2 |
| MS.gene05041.t1 | MTR_1g034210 | 35.185 | 108 | 65 | 2 | 23 | 125 | 7 | 114 | 3.60e-14 | 73.9 |
| MS.gene05041.t1 | MTR_1g034210 | 39.806 | 103 | 62 | 0 | 255 | 357 | 7 | 109 | 2.61e-20 | 93.2 |
| MS.gene05041.t1 | MTR_1g034210 | 35.185 | 108 | 65 | 2 | 23 | 125 | 7 | 114 | 4.86e-14 | 73.9 |
| MS.gene05041.t1 | MTR_1g035460 | 28.231 | 294 | 141 | 8 | 271 | 502 | 2 | 287 | 7.17e-20 | 92.0 |
| MS.gene05041.t1 | MTR_7g050590 | 27.586 | 290 | 147 | 10 | 271 | 505 | 2 | 283 | 1.27e-19 | 89.7 |
| MS.gene05041.t1 | MTR_0152s0100 | 39.640 | 111 | 66 | 1 | 396 | 506 | 3 | 112 | 5.36e-19 | 83.2 |
| MS.gene05041.t1 | MTR_0152s0100 | 39.640 | 111 | 66 | 1 | 396 | 506 | 3 | 112 | 5.36e-19 | 83.2 |
| MS.gene05041.t1 | MTR_4g119990 | 28.328 | 293 | 157 | 8 | 254 | 495 | 14 | 304 | 8.10e-19 | 88.6 |
| MS.gene05041.t1 | MTR_7g050720 | 25.733 | 307 | 170 | 6 | 254 | 502 | 9 | 315 | 1.27e-18 | 87.4 |
| MS.gene05041.t1 | MTR_3g061290 | 31.132 | 212 | 121 | 8 | 254 | 459 | 11 | 203 | 3.88e-18 | 83.2 |
| MS.gene05041.t1 | MTR_6g043890 | 27.719 | 285 | 157 | 8 | 254 | 492 | 14 | 295 | 1.83e-17 | 84.0 |
| MS.gene05041.t1 | MTR_1g035640 | 26.103 | 272 | 167 | 9 | 264 | 504 | 14 | 282 | 3.04e-15 | 78.6 |
| MS.gene05041.t1 | MTR_3g061330 | 40.404 | 99 | 57 | 1 | 255 | 353 | 12 | 108 | 1.36e-14 | 73.9 |
| MS.gene05041.t1 | MTR_3g061220 | 38.384 | 99 | 46 | 2 | 255 | 353 | 12 | 95 | 8.55e-14 | 68.2 |
| MS.gene05041.t1 | MTR_7g050640 | 35.789 | 95 | 61 | 0 | 254 | 348 | 12 | 106 | 8.41e-13 | 65.5 |
| MS.gene05041.t1 | MTR_1g035480 | 29.134 | 127 | 87 | 2 | 249 | 375 | 11 | 134 | 1.65e-12 | 66.6 |
| MS.gene05041.t1 | MTR_1g033740 | 32.743 | 113 | 71 | 3 | 254 | 366 | 21 | 128 | 4.44e-12 | 65.5 |
| MS.gene05041.t1 | MTR_1g035440 | 34.615 | 104 | 67 | 1 | 254 | 356 | 14 | 117 | 8.18e-12 | 65.9 |
| MS.gene05041.t1 | MTR_1g035500 | 29.508 | 122 | 83 | 2 | 254 | 375 | 24 | 142 | 2.81e-11 | 63.2 |
| MS.gene05041.t1 | MTR_1g050845 | 23.420 | 269 | 187 | 7 | 253 | 506 | 7 | 271 | 6.84e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05041.t1 | AT3G18990 | 28.060 | 335 | 158 | 8 | 255 | 506 | 6 | 340 | 3.85e-29 | 118 |
| MS.gene05041.t1 | AT3G18990 | 36.923 | 65 | 39 | 1 | 34 | 96 | 18 | 82 | 3.91e-11 | 65.1 |
| MS.gene05041.t1 | AT3G18990 | 28.144 | 334 | 157 | 8 | 255 | 505 | 6 | 339 | 1.08e-28 | 117 |
| MS.gene05041.t1 | AT3G18990 | 36.923 | 65 | 39 | 1 | 34 | 96 | 18 | 82 | 5.46e-11 | 64.7 |
| MS.gene05041.t1 | AT3G18960 | 37.121 | 132 | 80 | 1 | 224 | 355 | 2 | 130 | 3.89e-19 | 85.9 |
| MS.gene05041.t1 | AT3G18960 | 36.296 | 135 | 83 | 1 | 224 | 358 | 2 | 133 | 6.31e-19 | 85.9 |
| MS.gene05041.t1 | AT4G01580 | 34.815 | 135 | 85 | 1 | 224 | 358 | 2 | 133 | 8.64e-19 | 84.7 |
| MS.gene05041.t1 | AT1G49475 | 41.441 | 111 | 64 | 1 | 253 | 363 | 32 | 141 | 2.12e-18 | 83.6 |
| MS.gene05041.t1 | AT1G26680 | 21.533 | 548 | 332 | 21 | 22 | 500 | 14 | 532 | 8.59e-14 | 74.7 |
| MS.gene05041.t1 | AT3G18960 | 38.462 | 91 | 56 | 0 | 268 | 358 | 6 | 96 | 1.00e-13 | 69.7 |
| MS.gene05041.t1 | AT1G26680 | 21.533 | 548 | 332 | 21 | 22 | 500 | 14 | 532 | 1.03e-13 | 74.3 |
| MS.gene05041.t1 | AT2G24645 | 21.260 | 508 | 340 | 17 | 20 | 497 | 3 | 480 | 2.12e-13 | 72.8 |
| MS.gene05041.t1 | AT2G24645 | 20.971 | 515 | 341 | 17 | 20 | 497 | 3 | 488 | 2.53e-12 | 69.7 |
| MS.gene05041.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 126 | 232 | 113 | 220 | 2.39e-11 | 63.9 |
| MS.gene05041.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 401 | 506 | 118 | 225 | 2.89e-11 | 63.9 |
| MS.gene05041.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 126 | 232 | 113 | 220 | 2.39e-11 | 63.9 |
| MS.gene05041.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 401 | 506 | 118 | 225 | 2.89e-11 | 63.9 |
| MS.gene05041.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 126 | 232 | 113 | 220 | 2.39e-11 | 63.9 |
| MS.gene05041.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 401 | 506 | 118 | 225 | 2.89e-11 | 63.9 |
| MS.gene05041.t1 | AT2G24645 | 21.204 | 382 | 258 | 12 | 20 | 376 | 3 | 366 | 3.16e-11 | 65.9 |
| MS.gene05041.t1 | AT2G24645 | 21.272 | 456 | 291 | 16 | 77 | 497 | 44 | 466 | 4.40e-11 | 65.5 |
| MS.gene05041.t1 | AT1G26680 | 20.741 | 540 | 335 | 20 | 22 | 495 | 14 | 526 | 7.40e-11 | 65.5 |
| MS.gene05041.t1 | AT1G26680 | 20.741 | 540 | 335 | 20 | 22 | 495 | 14 | 526 | 7.54e-11 | 65.5 |
Find 85 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTTCCTTGAGAATTT+TGG | 0.134641 | 3.4:-65989044 | None:intergenic |
| GGCAGCACAATTCACTCTTT+TGG | 0.221967 | 3.4:-65987522 | None:intergenic |
| ACTGCTTTCCTTGAGAGTTT+TGG | 0.223060 | 3.4:-65987758 | None:intergenic |
| GATGAGTTTATAACAAGATT+TGG | 0.242784 | 3.4:+65988449 | MS.gene05041:CDS |
| TTGTTGTCCTTTACAAATTT+CGG | 0.251174 | 3.4:-65989129 | None:intergenic |
| AAATACTATTCGTTAGGATA+TGG | 0.294914 | 3.4:+65988587 | MS.gene05041:CDS |
| TATGGCTTTCATAAAATGTT+TGG | 0.299040 | 3.4:-65986399 | None:intergenic |
| TGTATGATCTGGAGGAAGTA+TGG | 0.327796 | 3.4:-65986417 | None:intergenic |
| TTCAAAACTCCAAGTACTAA+TGG | 0.347246 | 3.4:+65987467 | MS.gene05041:CDS |
| CTTTGATCTCCATTAGTACT+TGG | 0.349576 | 3.4:-65987476 | None:intergenic |
| ATTTGCATTGAGAATGATTT+GGG | 0.350230 | 3.4:-65989093 | None:intergenic |
| TCGAATGGGCGAGGGAAGTA+TGG | 0.363840 | 3.4:-65988146 | None:intergenic |
| CGATGGTCATGAATGGGAAA+TGG | 0.364796 | 3.4:+65987281 | MS.gene05041:CDS |
| ATGAGTTTATAACAAGATTT+GGG | 0.367534 | 3.4:+65988450 | MS.gene05041:CDS |
| TGGAGTGCGATTGGAACATT+TGG | 0.367737 | 3.4:-65989024 | None:intergenic |
| AAATGTTTGGAATCTTTCTC+TGG | 0.373697 | 3.4:-65986386 | None:intergenic |
| CTACTCCTATGAAAAGTTCC+AGG | 0.375640 | 3.4:+65988738 | MS.gene05041:CDS |
| TATTTGCATTGAGAATGATT+TGG | 0.397480 | 3.4:-65989094 | None:intergenic |
| GAATACTATTCCATCAGTTA+TGG | 0.411027 | 3.4:+65987360 | MS.gene05041:CDS |
| AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3.4:-65988446 | None:intergenic |
| GCGACGGAACACATCTTTGC+CGG | 0.419956 | 3.4:-65986352 | None:intergenic |
| ATTCTGTAGTACGTTCCTTC+TGG | 0.420347 | 3.4:+65987693 | MS.gene05041:intron |
| TACTATCTCTTTGTCTCGAA+TGG | 0.424496 | 3.4:-65988161 | None:intergenic |
| TTTGCAAAATACTATTCGTT+AGG | 0.426106 | 3.4:+65988581 | MS.gene05041:CDS |
| TAAGAAATCTCAACAGAAGT+TGG | 0.430655 | 3.4:-65987440 | None:intergenic |
| CAATGACTGAAAACGAAGTA+AGG | 0.437201 | 3.4:+65988101 | MS.gene05041:CDS |
| AAGGGAAAACAATCTATTAG+AGG | 0.448831 | 3.4:+65987854 | MS.gene05041:CDS |
| AATGGAGATCAAAGCATAAA+GGG | 0.451246 | 3.4:+65987485 | MS.gene05041:CDS |
| TTCTCAATGCAAATAACAAT+GGG | 0.452154 | 3.4:+65989102 | MS.gene05041:CDS |
| TAATGGAGATCAAAGCATAA+AGG | 0.452714 | 3.4:+65987484 | MS.gene05041:CDS |
| CTGTTCCTGATGGTCGTGAT+TGG | 0.457555 | 3.4:+65988501 | MS.gene05041:CDS |
| TATTGTATTTCGAATACAAA+AGG | 0.459107 | 3.4:+65987789 | MS.gene05041:CDS |
| CTCTTTGTCTCGAATGGGCG+AGG | 0.461765 | 3.4:-65988155 | None:intergenic |
| ATGTTTCGTGCGGTTGACTA+CGG | 0.465735 | 3.4:+65989219 | MS.gene05041:CDS |
| GGGATTTCCGAAATTTGTAA+AGG | 0.476832 | 3.4:+65989122 | MS.gene05041:CDS |
| ACTATCTCTTTGTCTCGAAT+GGG | 0.485230 | 3.4:-65988160 | None:intergenic |
| AAAATTCTCAAGGAAAGCAT+TGG | 0.485732 | 3.4:+65989046 | MS.gene05041:CDS |
| CTGTTCCCGATGGTCATGAA+TGG | 0.486944 | 3.4:+65987274 | MS.gene05041:CDS |
| TTGTGTGTTTGTTTCTCCAT+TGG | 0.489189 | 3.4:-65988711 | None:intergenic |
| GCAACTTGTAGCACAACAAC+AGG | 0.493988 | 3.4:-65987912 | None:intergenic |
| GATGGTCATGAATGGGAAAT+GGG | 0.496743 | 3.4:+65987282 | MS.gene05041:CDS |
| ACTGTTGCCAATTGTTGCTA+AGG | 0.496870 | 3.4:-65987332 | None:intergenic |
| TTGGAATCTTTCTCTGGTGC+CGG | 0.498708 | 3.4:-65986380 | None:intergenic |
| CATTTCCCATTCATGACCAT+CGG | 0.508232 | 3.4:-65987280 | None:intergenic |
| ATGTGTTCCGTCGCCGTCAC+CGG | 0.509296 | 3.4:+65986361 | MS.gene05041:CDS |
| ATTCTCAATGCAAATAACAA+TGG | 0.514820 | 3.4:+65989101 | MS.gene05041:CDS |
| ATTTCCCATTCATGACCATC+GGG | 0.517431 | 3.4:-65987279 | None:intergenic |
| CTCAAAACTCTAAGTACCAA+TGG | 0.522769 | 3.4:+65988695 | MS.gene05041:CDS |
| ACTGCCACTTGTTTCAACCC+TGG | 0.525622 | 3.4:-65988756 | None:intergenic |
| TGAGTTGATCAAGGAGAAGC+CGG | 0.526203 | 3.4:+65989179 | MS.gene05041:CDS |
| TGTTCCCGATGGTCATGAAT+GGG | 0.526364 | 3.4:+65987275 | MS.gene05041:CDS |
| TCTTTCTCTGGTGCCGGTGA+CGG | 0.528570 | 3.4:-65986374 | None:intergenic |
| TTGTGTGTTTGAGTTGATCA+AGG | 0.529271 | 3.4:+65989170 | MS.gene05041:CDS |
| TCTGGTGCCGGTGACGGCGA+CGG | 0.536574 | 3.4:-65986368 | None:intergenic |
| GTGGATTCAGTAAATTTGCA+AGG | 0.539955 | 3.4:+65987835 | MS.gene05041:CDS |
| TATTATATTTGATGTAACTT+CGG | 0.545296 | 3.4:+65988655 | MS.gene05041:CDS |
| TTTCATTCAAAATCCGTCAA+GGG | 0.556507 | 3.4:+65987572 | MS.gene05041:CDS |
| TACATATCTTTCAAATACGA+AGG | 0.575333 | 3.4:+65988614 | MS.gene05041:CDS |
| TTCATGCTCCAAAACTCTCA+AGG | 0.581396 | 3.4:+65987750 | MS.gene05041:CDS |
| AGGGAAAACAATCTATTAGA+GGG | 0.584707 | 3.4:+65987855 | MS.gene05041:CDS |
| ATGACCATCGGGAACAGTAA+TGG | 0.588903 | 3.4:-65987268 | None:intergenic |
| TGGATTCAGTAAATTTGCAA+GGG | 0.590777 | 3.4:+65987836 | MS.gene05041:CDS |
| AAAACTCTCAAGGAAAGCAG+TGG | 0.591204 | 3.4:+65987760 | MS.gene05041:CDS |
| CAATGCAGCCTCCATGCGGA+AGG | 0.592466 | 3.4:+65988068 | MS.gene05041:intron |
| AATTGCTAAGCGAAATCTTG+TGG | 0.593067 | 3.4:+65988877 | MS.gene05041:CDS |
| GACTGGGCACACCTTCCGCA+TGG | 0.593609 | 3.4:-65988079 | None:intergenic |
| ATGTGTTTGAGCTGATCAAG+AGG | 0.597303 | 3.4:+65987886 | MS.gene05041:CDS |
| AATGACTGAAAACGAAGTAA+GGG | 0.598240 | 3.4:+65988102 | MS.gene05041:CDS |
| TCTTTGTCTCGAATGGGCGA+GGG | 0.598615 | 3.4:-65988154 | None:intergenic |
| ATCGCACTCCAAAATTCTCA+AGG | 0.598710 | 3.4:+65989036 | MS.gene05041:CDS |
| ACAAGTTGCAGCAATTTGCA+CGG | 0.599452 | 3.4:+65987926 | MS.gene05041:CDS |
| TACTCCTATGAAAAGTTCCA+GGG | 0.613948 | 3.4:+65988739 | MS.gene05041:CDS |
| AAGAAACAATGAAGACTCAC+CGG | 0.615286 | 3.4:+65986333 | None:intergenic |
| GCTACCATTACTGTTCCCGA+TGG | 0.621287 | 3.4:+65987264 | MS.gene05041:CDS |
| GCTACAGTTACTGTTCCTGA+TGG | 0.628443 | 3.4:+65988491 | MS.gene05041:CDS |
| AGTTCCAGGGTTGAAACAAG+TGG | 0.632824 | 3.4:+65988752 | MS.gene05041:CDS |
| TCATCAATGCGAATAACGAG+TGG | 0.633101 | 3.4:+65987816 | MS.gene05041:CDS |
| AAACTCTCAAGGAAAGCAGT+GGG | 0.637619 | 3.4:+65987761 | MS.gene05041:CDS |
| CATTCATCATCACAGTAGAG+AGG | 0.649717 | 3.4:-65989247 | None:intergenic |
| AAAAGTCACAATGTTTCGTG+CGG | 0.653466 | 3.4:+65989209 | MS.gene05041:CDS |
| AAGGACAACAATCTGACACA+TGG | 0.654644 | 3.4:+65989141 | MS.gene05041:CDS |
| TGGGCACACCTTCCGCATGG+AGG | 0.664596 | 3.4:-65988076 | None:intergenic |
| ACATGCGTTTAAAAGTGCAG+AGG | 0.665182 | 3.4:+65988808 | MS.gene05041:CDS |
| ATTGCAATGCAGCCTCCATG+CGG | 0.701402 | 3.4:+65988064 | MS.gene05041:intron |
| GAAATGGGACTGAAGAAATG+TGG | 0.715375 | 3.4:+65987297 | MS.gene05041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATTATTTACAAATT+TGG | - | chr3.4:65987024-65987043 | None:intergenic | 10.0% |
| !! | CAAAAATTATTTACAAATTT+GGG | - | chr3.4:65987023-65987042 | None:intergenic | 10.0% |
| !!! | AATTTTTTTATTCTTATCAT+CGG | - | chr3.4:65988254-65988273 | None:intergenic | 10.0% |
| !! | AATGAGTTTATAAAAAGATT+TGG | + | chr3.4:65987222-65987241 | MS.gene05041:CDS | 15.0% |
| !! | ATTAATTATTAGTGTATGTT+TGG | + | chr3.4:65986686-65986705 | MS.gene05041:intron | 15.0% |
| !! | GCATAAAAATATAAAACAAT+AGG | - | chr3.4:65986619-65986638 | None:intergenic | 15.0% |
| !! | TATTATATTTGATGTAACTT+CGG | + | chr3.4:65988655-65988674 | MS.gene05041:CDS | 15.0% |
| !!! | AATCTTTTTATAAACTCATT+TGG | - | chr3.4:65987222-65987241 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATTCTTATCATC+GGG | - | chr3.4:65988253-65988272 | None:intergenic | 15.0% |
| !!! | CAATTTTTGAACAAAAATAA+GGG | - | chr3.4:65988862-65988881 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTCAAGTATGAA+GGG | + | chr3.4:65987387-65987406 | MS.gene05041:intron | 15.0% |
| !!! | TTTTTAAATTTCAAGTATGA+AGG | + | chr3.4:65987386-65987405 | MS.gene05041:intron | 15.0% |
| !! | AAAAAGCTCAAAATAAAGTT+TGG | + | chr3.4:65988785-65988804 | MS.gene05041:CDS | 20.0% |
| !! | ATGAGTTTATAACAAGATTT+GGG | + | chr3.4:65988450-65988469 | MS.gene05041:CDS | 20.0% |
| !! | TATTGTATTTCGAATACAAA+AGG | + | chr3.4:65987789-65987808 | MS.gene05041:CDS | 20.0% |
| !! | TTAAAAAAAACCATAACTGA+TGG | - | chr3.4:65987373-65987392 | None:intergenic | 20.0% |
| !!! | AATGAAAATAAGGGTTTTTT+GGG | - | chr3.4:65987559-65987578 | None:intergenic | 20.0% |
| !!! | ATGTTTGAACTAATTTTTGT+GGG | - | chr3.4:65987067-65987086 | None:intergenic | 20.0% |
| !!! | ATGTTTGAGTTATATACTTA+CGG | + | chr3.4:65987645-65987664 | MS.gene05041:intron | 20.0% |
| !!! | GAATTTTACTTTGTAGTTTT+TGG | + | chr3.4:65988903-65988922 | MS.gene05041:intron | 20.0% |
| !!! | GCAATTTTTGAACAAAAATA+AGG | - | chr3.4:65988863-65988882 | None:intergenic | 20.0% |
| !!! | TAAAAAGTATTTGATGCTAA+TGG | + | chr3.4:65987722-65987741 | MS.gene05041:CDS | 20.0% |
| !!! | TATGTTTGAACTAATTTTTG+TGG | - | chr3.4:65987068-65987087 | None:intergenic | 20.0% |
| !!! | TTGTATGACTTTTAACTTTA+TGG | + | chr3.4:65986548-65986567 | MS.gene05041:intron | 20.0% |
| !!! | TTTTTTTATTCTTATCATCG+GGG | - | chr3.4:65988252-65988271 | None:intergenic | 20.0% |
| ! | AAATACTATTCGTTAGGATA+TGG | + | chr3.4:65988587-65988606 | MS.gene05041:CDS | 25.0% |
| ! | ACTACTTCAAAACATCAAAT+TGG | + | chr3.4:65988343-65988362 | MS.gene05041:intron | 25.0% |
| ! | ATCAATCAATCTTCAAAAGA+GGG | - | chr3.4:65987155-65987174 | None:intergenic | 25.0% |
| ! | ATTCTCAATGCAAATAACAA+TGG | + | chr3.4:65989101-65989120 | MS.gene05041:CDS | 25.0% |
| ! | ATTTGCATTGAGAATGATTT+GGG | - | chr3.4:65989096-65989115 | None:intergenic | 25.0% |
| ! | CTACTTCAAAACATCAAATT+GGG | + | chr3.4:65988344-65988363 | MS.gene05041:intron | 25.0% |
| ! | CTATAATACCAAACTTCAAA+AGG | - | chr3.4:65988392-65988411 | None:intergenic | 25.0% |
| ! | GATGAGTTTATAACAAGATT+TGG | + | chr3.4:65988449-65988468 | MS.gene05041:CDS | 25.0% |
| ! | GGTATTATAGTATAACCAAT+AGG | + | chr3.4:65988402-65988421 | MS.gene05041:intron | 25.0% |
| ! | TACATATCTTTCAAATACGA+AGG | + | chr3.4:65988614-65988633 | MS.gene05041:CDS | 25.0% |
| ! | TACTTCAAAACATCAAATTG+GGG | + | chr3.4:65988345-65988364 | MS.gene05041:intron | 25.0% |
| ! | TATGGCTTTCATAAAATGTT+TGG | - | chr3.4:65986402-65986421 | None:intergenic | 25.0% |
| ! | TATTTGCATTGAGAATGATT+TGG | - | chr3.4:65989097-65989116 | None:intergenic | 25.0% |
| ! | TTCTCAATGCAAATAACAAT+GGG | + | chr3.4:65989102-65989121 | MS.gene05041:CDS | 25.0% |
| ! | TTGTTGTCCTTTACAAATTT+CGG | - | chr3.4:65989132-65989151 | None:intergenic | 25.0% |
| ! | TTTGCAAAATACTATTCGTT+AGG | + | chr3.4:65988581-65988600 | MS.gene05041:CDS | 25.0% |
| !! | AATCTTGTTATAAACTCATC+TGG | - | chr3.4:65988449-65988468 | None:intergenic | 25.0% |
| !! | AATGCTGATACTACTTATTT+TGG | + | chr3.4:65986519-65986538 | MS.gene05041:intron | 25.0% |
| !! | ACGGATTTTGAATGAAAATA+AGG | - | chr3.4:65987569-65987588 | None:intergenic | 25.0% |
| !! | CGGATTTTGAATGAAAATAA+GGG | - | chr3.4:65987568-65987587 | None:intergenic | 25.0% |
| !! | GATTTTATAAACCTACAAAG+TGG | + | chr3.4:65986811-65986830 | MS.gene05041:intron | 25.0% |
| !!! | ACTATTTCTTTTGTATGATC+TGG | - | chr3.4:65986431-65986450 | None:intergenic | 25.0% |
| !!! | GAACAAAAATAAGGGTTTTT+TGG | - | chr3.4:65988854-65988873 | None:intergenic | 25.0% |
| !!! | GAATGAAAATAAGGGTTTTT+TGG | - | chr3.4:65987560-65987579 | None:intergenic | 25.0% |
| !!! | GATTTCACTTTCTAGTTTTT+TGG | + | chr3.4:65987610-65987629 | MS.gene05041:intron | 25.0% |
| !!! | GTTTTTTGGATTGAATTCAT+TGG | - | chr3.4:65988840-65988859 | None:intergenic | 25.0% |
| AAGGGAAAACAATCTATTAG+AGG | + | chr3.4:65987854-65987873 | MS.gene05041:CDS | 30.0% | |
| AATACCAAACTTCAAAAGGA+GGG | - | chr3.4:65988388-65988407 | None:intergenic | 30.0% | |
| AATGACTGAAAACGAAGTAA+GGG | + | chr3.4:65988102-65988121 | MS.gene05041:CDS | 30.0% | |
| AATGGAGATCAAAGCATAAA+GGG | + | chr3.4:65987485-65987504 | MS.gene05041:CDS | 30.0% | |
| ACAGTAAGTCAAAACAGAAA+GGG | - | chr3.4:65988192-65988211 | None:intergenic | 30.0% | |
| AGGGAAAACAATCTATTAGA+GGG | + | chr3.4:65987855-65987874 | MS.gene05041:CDS | 30.0% | |
| GAATACTATTCCATCAGTTA+TGG | + | chr3.4:65987360-65987379 | MS.gene05041:CDS | 30.0% | |
| GATCAATCAATCTTCAAAAG+AGG | - | chr3.4:65987156-65987175 | None:intergenic | 30.0% | |
| TAAGAAATCTCAACAGAAGT+TGG | - | chr3.4:65987443-65987462 | None:intergenic | 30.0% | |
| TAATACCAAACTTCAAAAGG+AGG | - | chr3.4:65988389-65988408 | None:intergenic | 30.0% | |
| TAATGGAGATCAAAGCATAA+AGG | + | chr3.4:65987484-65987503 | MS.gene05041:CDS | 30.0% | |
| TCAATCAATCTTCAAAAGAG+GGG | - | chr3.4:65987154-65987173 | None:intergenic | 30.0% | |
| TGGATTCAGTAAATTTGCAA+GGG | + | chr3.4:65987836-65987855 | MS.gene05041:CDS | 30.0% | |
| TTCAAAACTCCAAGTACTAA+TGG | + | chr3.4:65987467-65987486 | MS.gene05041:CDS | 30.0% | |
| TTTCATTCAAAATCCGTCAA+GGG | + | chr3.4:65987572-65987591 | MS.gene05041:CDS | 30.0% | |
| ! | AAAATTCTCAAGGAAAGCAT+TGG | + | chr3.4:65989046-65989065 | MS.gene05041:CDS | 30.0% |
| ! | AAATGTTTGGAATCTTTCTC+TGG | - | chr3.4:65986389-65986408 | None:intergenic | 30.0% |
| ! | AATGCTTTCCTTGAGAATTT+TGG | - | chr3.4:65989047-65989066 | None:intergenic | 30.0% |
| ! | ACATTTTCTTTTGCAACGAA+TGG | + | chr3.4:65988552-65988571 | MS.gene05041:CDS | 30.0% |
| ! | ATGTTTTCCTTAGCAACAAT+TGG | + | chr3.4:65987325-65987344 | MS.gene05041:CDS | 30.0% |
| ! | ATTTCTTTTGTATGATCTGG+AGG | - | chr3.4:65986428-65986447 | None:intergenic | 30.0% |
| ! | TCTTTTAATGTCTGAACTGT+TGG | + | chr3.4:65988005-65988024 | MS.gene05041:intron | 30.0% |
| ! | TTTGAACTAATTTTTGTGGG+AGG | - | chr3.4:65987064-65987083 | None:intergenic | 30.0% |
| ! | TTTTCATTCAAAATCCGTCA+AGG | + | chr3.4:65987571-65987590 | MS.gene05041:CDS | 30.0% |
| !! | GGAATCGAAACATTTTAAGA+AGG | + | chr3.4:65988123-65988142 | MS.gene05041:CDS | 30.0% |
| !! | TACTTTTTAGCAAAACCAGA+AGG | - | chr3.4:65987711-65987730 | None:intergenic | 30.0% |
| !!! | TTAGTACTTGGAGTTTTGAA+TGG | - | chr3.4:65987467-65987486 | None:intergenic | 30.0% |
| AAAAGTCACAATGTTTCGTG+CGG | + | chr3.4:65989209-65989228 | MS.gene05041:CDS | 35.0% | |
| AATTGCTAAGCGAAATCTTG+TGG | + | chr3.4:65988877-65988896 | MS.gene05041:CDS | 35.0% | |
| ACTATCTCTTTGTCTCGAAT+GGG | - | chr3.4:65988163-65988182 | None:intergenic | 35.0% | |
| ATGCAAAAAACTTCGAGTCA+GGG | + | chr3.4:65986956-65986975 | MS.gene05041:intron | 35.0% | |
| CAATGACTGAAAACGAAGTA+AGG | + | chr3.4:65988101-65988120 | MS.gene05041:CDS | 35.0% | |
| CTAGACACCTAAATGTGATT+TGG | - | chr3.4:65988301-65988320 | None:intergenic | 35.0% | |
| CTCAAAACTCTAAGTACCAA+TGG | + | chr3.4:65988695-65988714 | MS.gene05041:CDS | 35.0% | |
| CTCATCAGTTATGCTACTAT+AGG | - | chr3.4:65987178-65987197 | None:intergenic | 35.0% | |
| CTTTGATCTCCATTAGTACT+TGG | - | chr3.4:65987479-65987498 | None:intergenic | 35.0% | |
| GACAGTAAGTCAAAACAGAA+AGG | - | chr3.4:65988193-65988212 | None:intergenic | 35.0% | |
| GGGATTTCCGAAATTTGTAA+AGG | + | chr3.4:65989122-65989141 | MS.gene05041:CDS | 35.0% | |
| GTGGATTCAGTAAATTTGCA+AGG | + | chr3.4:65987835-65987854 | MS.gene05041:CDS | 35.0% | |
| TACTATCTCTTTGTCTCGAA+TGG | - | chr3.4:65988164-65988183 | None:intergenic | 35.0% | |
| TACTCCTATGAAAAGTTCCA+GGG | + | chr3.4:65988739-65988758 | MS.gene05041:CDS | 35.0% | |
| TTGAGCCTACAAATCATGTT+TGG | + | chr3.4:65986933-65986952 | MS.gene05041:intron | 35.0% | |
| ! | ATTGTGACTTTTAGCACAAC+CGG | - | chr3.4:65989201-65989220 | None:intergenic | 35.0% |
| ! | GATTGATTGAGCATGTGTTT+TGG | + | chr3.4:65986742-65986761 | MS.gene05041:intron | 35.0% |
| ! | TGCATCCAAACATGATTTGT+AGG | - | chr3.4:65986941-65986960 | None:intergenic | 35.0% |
| ! | TTGTGTGTTTGTTTCTCCAT+TGG | - | chr3.4:65988714-65988733 | None:intergenic | 35.0% |
| !! | GAGCATGTGTTTTGGATTAA+TGG | + | chr3.4:65986750-65986769 | MS.gene05041:intron | 35.0% |
| !! | TTCGTTTTCAGTCATTGACT+GGG | - | chr3.4:65988098-65988117 | None:intergenic | 35.0% |
| !! | TTGTGTGTTTGAGTTGATCA+AGG | + | chr3.4:65989170-65989189 | MS.gene05041:CDS | 35.0% |
| !!! | GTTTTTTGGGTTGAATTCAC+TGG | - | chr3.4:65987546-65987565 | None:intergenic | 35.0% |
| !!! | TTGGTACTTAGAGTTTTGAG+TGG | - | chr3.4:65988695-65988714 | None:intergenic | 35.0% |
| AAAACTCTCAAGGAAAGCAG+TGG | + | chr3.4:65987760-65987779 | MS.gene05041:CDS | 40.0% | |
| AAACTCTCAAGGAAAGCAGT+GGG | + | chr3.4:65987761-65987780 | MS.gene05041:CDS | 40.0% | |
| AAGGACAACAATCTGACACA+TGG | + | chr3.4:65989141-65989160 | MS.gene05041:CDS | 40.0% | |
| ACAAGTTGCAGCAATTTGCA+CGG | + | chr3.4:65987926-65987945 | MS.gene05041:CDS | 40.0% | |
| ACTGTTGCCAATTGTTGCTA+AGG | - | chr3.4:65987335-65987354 | None:intergenic | 40.0% | |
| AGGAACGTACTACAGAATGA+AGG | - | chr3.4:65987691-65987710 | None:intergenic | 40.0% | |
| ATCGCACTCCAAAATTCTCA+AGG | + | chr3.4:65989036-65989055 | MS.gene05041:CDS | 40.0% | |
| ATGTGTTTGAGCTGATCAAG+AGG | + | chr3.4:65987886-65987905 | MS.gene05041:CDS | 40.0% | |
| ATTCTGTAGTACGTTCCTTC+TGG | + | chr3.4:65987693-65987712 | MS.gene05041:intron | 40.0% | |
| ATTTCCCATTCATGACCATC+GGG | - | chr3.4:65987282-65987301 | None:intergenic | 40.0% | |
| CATTTCCCATTCATGACCAT+CGG | - | chr3.4:65987283-65987302 | None:intergenic | 40.0% | |
| CTACTCCTATGAAAAGTTCC+AGG | + | chr3.4:65988738-65988757 | MS.gene05041:CDS | 40.0% | |
| GAAATGGGACTGAAGAAATG+TGG | + | chr3.4:65987297-65987316 | MS.gene05041:CDS | 40.0% | |
| GACGTGTCCAAATCACATTT+AGG | + | chr3.4:65988291-65988310 | MS.gene05041:intron | 40.0% | |
| GATGCAAAAAACTTCGAGTC+AGG | + | chr3.4:65986955-65986974 | MS.gene05041:intron | 40.0% | |
| GATGGTCATGAATGGGAAAT+GGG | + | chr3.4:65987282-65987301 | MS.gene05041:CDS | 40.0% | |
| TCATCAATGCGAATAACGAG+TGG | + | chr3.4:65987816-65987835 | MS.gene05041:CDS | 40.0% | |
| TGTATGATCTGGAGGAAGTA+TGG | - | chr3.4:65986420-65986439 | None:intergenic | 40.0% | |
| TTCATGCTCCAAAACTCTCA+AGG | + | chr3.4:65987750-65987769 | MS.gene05041:CDS | 40.0% | |
| ! | ACATGCGTTTAAAAGTGCAG+AGG | + | chr3.4:65988808-65988827 | MS.gene05041:CDS | 40.0% |
| ! | ACTGCTTTCCTTGAGAGTTT+TGG | - | chr3.4:65987761-65987780 | None:intergenic | 40.0% |
| ! | ATTTTCCAATCACGACCATC+AGG | - | chr3.4:65988509-65988528 | None:intergenic | 40.0% |
| ! | CTGGAACTTTTCATAGGAGT+AGG | - | chr3.4:65988740-65988759 | None:intergenic | 40.0% |
| ! | CTTCGTTTTCAGTCATTGAC+TGG | - | chr3.4:65988099-65988118 | None:intergenic | 40.0% |
| ! | GCAGCACAATTCACTCTTTT+GGG | - | chr3.4:65987524-65987543 | None:intergenic | 40.0% |
| ! | TCAACCCTGGAACTTTTCAT+AGG | - | chr3.4:65988746-65988765 | None:intergenic | 40.0% |
| !! | ACTCTAACTCTGAAACTTCG+AGG | + | chr3.4:65986489-65986508 | MS.gene05041:intron | 40.0% |
| !! | AGGACTAGCTACACACATAT+AGG | - | chr3.4:65986599-65986618 | None:intergenic | 40.0% |
| !!! | ACTCTTTTGGGATCAGAGTT+AGG | - | chr3.4:65987512-65987531 | None:intergenic | 40.0% |
| !!! | GTTACCCTCCTTTTGAAGTT+TGG | + | chr3.4:65988381-65988400 | MS.gene05041:intron | 40.0% |
| !!! | TGAGAATTTTGGAGTGCGAT+TGG | - | chr3.4:65989036-65989055 | None:intergenic | 40.0% |
| !!! | TGAGAGTTTTGGAGCATGAA+CGG | - | chr3.4:65987750-65987769 | None:intergenic | 40.0% |
| AGTTCCAGGGTTGAAACAAG+TGG | + | chr3.4:65988752-65988771 | MS.gene05041:CDS | 45.0% | |
| ATGACCATCGGGAACAGTAA+TGG | - | chr3.4:65987271-65987290 | None:intergenic | 45.0% | |
| ATGTTTCGTGCGGTTGACTA+CGG | + | chr3.4:65989219-65989238 | MS.gene05041:CDS | 45.0% | |
| CGATGGTCATGAATGGGAAA+TGG | + | chr3.4:65987281-65987300 | MS.gene05041:CDS | 45.0% | |
| CGTACTACAGAATGAAGGAG+AGG | - | chr3.4:65987686-65987705 | None:intergenic | 45.0% | |
| CTGCAGTGATAACAGCCTAT+TGG | - | chr3.4:65988420-65988439 | None:intergenic | 45.0% | |
| GCAACTTGTAGCACAACAAC+AGG | - | chr3.4:65987915-65987934 | None:intergenic | 45.0% | |
| GCTACAGTTACTGTTCCTGA+TGG | + | chr3.4:65988491-65988510 | MS.gene05041:CDS | 45.0% | |
| TGGAGTGCGATTGGAACATT+TGG | - | chr3.4:65989027-65989046 | None:intergenic | 45.0% | |
| TGTTCCCGATGGTCATGAAT+GGG | + | chr3.4:65987275-65987294 | MS.gene05041:CDS | 45.0% | |
| TTGGAATCTTTCTCTGGTGC+CGG | - | chr3.4:65986383-65986402 | None:intergenic | 45.0% | |
| ! | GGCAGCACAATTCACTCTTT+TGG | - | chr3.4:65987525-65987544 | None:intergenic | 45.0% |
| !! | TGAGTTGATCAAGGAGAAGC+CGG | + | chr3.4:65989179-65989198 | MS.gene05041:CDS | 45.0% |
| !!! | ATCCGTCAAGGGCATTTTTG+CGG | + | chr3.4:65987583-65987602 | MS.gene05041:CDS | 45.0% |
| !!! | GTGGGAGGCAACATTGATTT+TGG | - | chr3.4:65987049-65987068 | None:intergenic | 45.0% |
| ATTGCAATGCAGCCTCCATG+CGG | + | chr3.4:65988064-65988083 | MS.gene05041:intron | 50.0% | |
| CACCGCAAAAATGCCCTTGA+CGG | - | chr3.4:65987588-65987607 | None:intergenic | 50.0% | |
| CGAGTCAGGGCTACAAGTTT+AGG | + | chr3.4:65986969-65986988 | MS.gene05041:intron | 50.0% | |
| CTGTTCCCGATGGTCATGAA+TGG | + | chr3.4:65987274-65987293 | MS.gene05041:CDS | 50.0% | |
| CTGTTCCTGATGGTCGTGAT+TGG | + | chr3.4:65988501-65988520 | MS.gene05041:CDS | 50.0% | |
| GCTACCATTACTGTTCCCGA+TGG | + | chr3.4:65987264-65987283 | MS.gene05041:CDS | 50.0% | |
| TACAAAGTGGAGCCTCTCAG+CGG | + | chr3.4:65986824-65986843 | MS.gene05041:intron | 50.0% | |
| TCTTTGTCTCGAATGGGCGA+GGG | - | chr3.4:65988157-65988176 | None:intergenic | 50.0% | |
| ! | ACTGCCACTTGTTTCAACCC+TGG | - | chr3.4:65988759-65988778 | None:intergenic | 50.0% |
| !!! | TCAAGGGCATTTTTGCGGTG+AGG | + | chr3.4:65987588-65987607 | MS.gene05041:intron | 50.0% |
| CTCTTTGTCTCGAATGGGCG+AGG | - | chr3.4:65988158-65988177 | None:intergenic | 55.0% | |
| GCGACGGAACACATCTTTGC+CGG | - | chr3.4:65986355-65986374 | None:intergenic | 55.0% | |
| GCTGAGAGGCTCCACTTTGT+AGG | - | chr3.4:65986825-65986844 | None:intergenic | 55.0% | |
| TCGAATGGGCGAGGGAAGTA+TGG | - | chr3.4:65988149-65988168 | None:intergenic | 55.0% | |
| ! | GTGATGATGAGTCCGCTGAG+AGG | - | chr3.4:65986839-65986858 | None:intergenic | 55.0% |
| !! | TCTTTCTCTGGTGCCGGTGA+CGG | - | chr3.4:65986377-65986396 | None:intergenic | 55.0% |
| ATGTGTTCCGTCGCCGTCAC+CGG | + | chr3.4:65986361-65986380 | MS.gene05041:CDS | 60.0% | |
| CAATGCAGCCTCCATGCGGA+AGG | + | chr3.4:65988068-65988087 | MS.gene05041:intron | 60.0% | |
| GACTGGGCACACCTTCCGCA+TGG | - | chr3.4:65988082-65988101 | None:intergenic | 65.0% | |
| TGGGCACACCTTCCGCATGG+AGG | - | chr3.4:65988079-65988098 | None:intergenic | 65.0% | |
| !! | TCTGGTGCCGGTGACGGCGA+CGG | - | chr3.4:65986371-65986390 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65986341 | 65989260 | 65986341 | ID=MS.gene05041 |
| chr3.4 | mRNA | 65986341 | 65989260 | 65986341 | ID=MS.gene05041.t1;Parent=MS.gene05041 |
| chr3.4 | exon | 65986341 | 65986448 | 65986341 | ID=MS.gene05041.t1.exon1;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65986341 | 65986448 | 65986341 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| chr3.4 | exon | 65987213 | 65987381 | 65987213 | ID=MS.gene05041.t1.exon2;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65987213 | 65987381 | 65987213 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| chr3.4 | exon | 65987426 | 65987604 | 65987426 | ID=MS.gene05041.t1.exon3;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65987426 | 65987604 | 65987426 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| chr3.4 | exon | 65987702 | 65987947 | 65987702 | ID=MS.gene05041.t1.exon4;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65987702 | 65987947 | 65987702 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| chr3.4 | exon | 65988076 | 65988180 | 65988076 | ID=MS.gene05041.t1.exon5;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65988076 | 65988180 | 65988076 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| chr3.4 | exon | 65988440 | 65988898 | 65988440 | ID=MS.gene05041.t1.exon6;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65988440 | 65988898 | 65988440 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| chr3.4 | exon | 65988988 | 65989260 | 65988988 | ID=MS.gene05041.t1.exon7;Parent=MS.gene05041.t1 |
| chr3.4 | CDS | 65988988 | 65989260 | 65988988 | ID=cds.MS.gene05041.t1;Parent=MS.gene05041.t1 |
| Gene Sequence |
| Protein sequence |
