Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050454.t1 | XP_013459813.1 | 99 | 207 | 2 | 0 | 1 | 207 | 29 | 235 | 9.20E-120 | 439.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050454.t1 | A0A072UVJ3 | 99.0 | 207 | 2 | 0 | 1 | 207 | 29 | 235 | 6.6e-120 | 439.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050454.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050454.t1 | MTR_3g052770 | 99.095 | 221 | 2 | 0 | 1 | 221 | 29 | 249 | 1.22e-167 | 462 |
| MS.gene050454.t1 | MTR_4g104230 | 61.468 | 218 | 84 | 0 | 4 | 221 | 36 | 253 | 6.78e-105 | 304 |
| MS.gene050454.t1 | MTR_4g104230 | 61.468 | 218 | 84 | 0 | 4 | 221 | 37 | 254 | 9.12e-105 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050454.t1 | AT5G63280 | 60.987 | 223 | 85 | 1 | 1 | 221 | 26 | 248 | 1.59e-99 | 290 |
| MS.gene050454.t1 | AT5G40710 | 60.386 | 207 | 81 | 1 | 15 | 221 | 44 | 249 | 5.03e-98 | 286 |
| MS.gene050454.t1 | AT5G40710 | 64.706 | 153 | 54 | 0 | 15 | 167 | 44 | 196 | 1.31e-75 | 228 |
Find 40 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTCCAATTTACTTAATT+TGG | 0.122652 | 3.3:+34958256 | MS.gene050454:CDS |
| AATGTTATTGTTCAGAATTC+TGG | 0.162180 | 3.3:+34957838 | MS.gene050454:intron |
| TAATACCAAATTAAGTAAAT+TGG | 0.257196 | 3.3:-34958261 | None:intergenic |
| TGTGACCATGAAATTAATTC+TGG | 0.266563 | 3.3:+34959261 | MS.gene050454:CDS |
| CCTGCAGCGAGCCGGCTTCA+TGG | 0.327309 | 3.3:+34959452 | MS.gene050454:CDS |
| GCTGCAGGACCCTCGTTAAC+TGG | 0.349350 | 3.3:-34959437 | None:intergenic |
| TTGACCCAGAATTAATTTCA+TGG | 0.350995 | 3.3:-34959266 | None:intergenic |
| TCAAATTACCCTGCGCCCTC+TGG | 0.382051 | 3.3:-34959622 | None:intergenic |
| TTATTTCTTGCTGCAGCAGC+AGG | 0.412858 | 3.3:-34959306 | None:intergenic |
| TCTCTATATATATCATTGTC+AGG | 0.427562 | 3.3:-34958128 | None:intergenic |
| ATTGTTCAGAATTCTGGATC+AGG | 0.460914 | 3.3:+34957844 | MS.gene050454:intron |
| CCATGAAGCCGGCTCGCTGC+AGG | 0.478890 | 3.3:-34959452 | None:intergenic |
| GCAGTATTTGACGACATTTG+TGG | 0.483411 | 3.3:+34958064 | MS.gene050454:intron |
| GAGAAAGAAGTAGAATAGCT+TGG | 0.485109 | 3.3:+34957900 | MS.gene050454:CDS |
| TGTGATGCTCACACCTGCAC+TGG | 0.492800 | 3.3:+34959582 | MS.gene050454:CDS |
| GTGACCATGAAATTAATTCT+GGG | 0.499220 | 3.3:+34959262 | MS.gene050454:CDS |
| GCTCACACCTGCACTGGACG+TGG | 0.502873 | 3.3:+34959588 | MS.gene050454:CDS |
| AGGCTTTCCACGTCCAGTGC+AGG | 0.511555 | 3.3:-34959595 | None:intergenic |
| CTCATATAGATATAAATGAA+TGG | 0.514723 | 3.3:+34958168 | MS.gene050454:CDS |
| CAATGATATATATAGAGATC+AGG | 0.516644 | 3.3:+34958133 | MS.gene050454:CDS |
| ACCCTGCGCCCTCTGGAGAA+AGG | 0.523388 | 3.3:-34959615 | None:intergenic |
| AGCCTTTCTCCAGAGGGCGC+AGG | 0.526816 | 3.3:+34959613 | MS.gene050454:CDS |
| ACGAGGGTCCTGCAGCGAGC+CGG | 0.531828 | 3.3:+34959444 | MS.gene050454:CDS |
| ATAATATCTCAAGAAGGTGC+AGG | 0.547108 | 3.3:+34958099 | MS.gene050454:CDS |
| TCTACATGTATTTATATCAA+AGG | 0.559173 | 3.3:+34960592 | MS.gene050454:CDS |
| GCCTTTCTCCAGAGGGCGCA+GGG | 0.563120 | 3.3:+34959614 | MS.gene050454:CDS |
| TGGAAAACAACTATCAGCTA+TGG | 0.566317 | 3.3:-34959417 | None:intergenic |
| CACATACATCTGCTAAGCAC+CGG | 0.569311 | 3.3:-34959227 | None:intergenic |
| CTCTATATATATCATTGTCA+GGG | 0.590660 | 3.3:-34958127 | None:intergenic |
| ATATTGAAATACCATGAAGC+CGG | 0.593494 | 3.3:-34959463 | None:intergenic |
| TTGCAGCATCTGAATCTACA+TGG | 0.597085 | 3.3:-34957411 | None:intergenic |
| CGGTGCTTAGCAGATGTATG+TGG | 0.600256 | 3.3:+34959228 | MS.gene050454:CDS |
| ATGTAGATTCAGATGCTGCA+AGG | 0.607887 | 3.3:+34957413 | MS.gene050454:CDS |
| CGTGGAAAGCCTTTCTCCAG+AGG | 0.614403 | 3.3:+34959606 | MS.gene050454:CDS |
| AGCTTGGAAGATCGTTCAAG+AGG | 0.626181 | 3.3:+34957916 | MS.gene050454:CDS |
| AAGAAATAAGCATATATGTG+AGG | 0.634147 | 3.3:+34959320 | MS.gene050454:CDS |
| GTGGAAAGCCTTTCTCCAGA+GGG | 0.645090 | 3.3:+34959607 | MS.gene050454:CDS |
| GCTGAATCCAGAAAGAAAGC+CGG | 0.646951 | 3.3:+34959208 | MS.gene050454:intron |
| GATATAAATGAATGGCAGTG+TGG | 0.647971 | 3.3:+34958176 | MS.gene050454:CDS |
| ATTCTGGATCAGGAGCAGAG+TGG | 0.757422 | 3.3:+34957854 | MS.gene050454:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTCTTTTAAAATTTCT+AGG | - | chr3.3:34959028-34959047 | None:intergenic | 10.0% |
| !!! | AGAAATTAGAATATAATTTT+AGG | - | chr3.3:34959382-34959401 | None:intergenic | 10.0% |
| !!! | ATAATAATTTTAGAAAATAG+AGG | - | chr3.3:34958596-34958615 | None:intergenic | 10.0% |
| !!! | ATTTTTTGGAAATATTAATA+TGG | + | chr3.3:34958437-34958456 | MS.gene050454:intron | 10.0% |
| !!! | CTATTTTCTAAAATTATTAT+TGG | + | chr3.3:34958596-34958615 | MS.gene050454:intron | 10.0% |
| !!! | GAAATTTTAAAAGAATTTTA+AGG | + | chr3.3:34959029-34959048 | MS.gene050454:intron | 10.0% |
| !! | AAAAATATAATATCTCAAGA+AGG | + | chr3.3:34958093-34958112 | MS.gene050454:CDS | 15.0% |
| !! | TAAATATCATTGTTTAAACT+AGG | + | chr3.3:34958934-34958953 | MS.gene050454:intron | 15.0% |
| !! | TAATACCAAATTAAGTAAAT+TGG | - | chr3.3:34958264-34958283 | None:intergenic | 15.0% |
| !!! | AAAATATTTTTACCTTTTCT+TGG | + | chr3.3:34957764-34957783 | MS.gene050454:intron | 15.0% |
| !!! | ATTAATATGGTTATTTTATG+AGG | + | chr3.3:34958450-34958469 | MS.gene050454:intron | 15.0% |
| !!! | TAAAATTGTATTGATTCTAT+TGG | - | chr3.3:34958297-34958316 | None:intergenic | 15.0% |
| !! | ATTAACTATATCATGAATGA+TGG | - | chr3.3:34958408-34958427 | None:intergenic | 20.0% |
| !! | CTACATGTATTTATATCAAA+GGG | + | chr3.3:34960593-34960612 | MS.gene050454:CDS | 20.0% |
| !! | CTCATATAGATATAAATGAA+TGG | + | chr3.3:34958168-34958187 | MS.gene050454:CDS | 20.0% |
| !! | TATTAAATGATGTCAAATAG+TGG | + | chr3.3:34959760-34959779 | MS.gene050454:intron | 20.0% |
| !! | TCTACATGTATTTATATCAA+AGG | + | chr3.3:34960592-34960611 | MS.gene050454:CDS | 20.0% |
| !! | TTGCAGAATTTGTATATTTA+TGG | + | chr3.3:34959499-34959518 | MS.gene050454:intron | 20.0% |
| !!! | ACTGTTTTTATAAGCTATAT+TGG | - | chr3.3:34960186-34960205 | None:intergenic | 20.0% |
| !!! | TTTCCAGAAATCTTTATTTT+TGG | + | chr3.3:34959921-34959940 | MS.gene050454:intron | 20.0% |
| ! | AAGAAATAAGCATATATGTG+AGG | + | chr3.3:34959320-34959339 | MS.gene050454:CDS | 25.0% |
| ! | AATGTTATTGTTCAGAATTC+TGG | + | chr3.3:34957838-34957857 | MS.gene050454:intron | 25.0% |
| ! | ACACTCCAATTTACTTAATT+TGG | + | chr3.3:34958256-34958275 | MS.gene050454:CDS | 25.0% |
| ! | ACTAAAGTAAACAAACACAT+TGG | + | chr3.3:34957612-34957631 | MS.gene050454:intron | 25.0% |
| ! | ACTAGTTATTTGATCAACAA+TGG | - | chr3.3:34958329-34958348 | None:intergenic | 25.0% |
| ! | AGAATTCTGTCAAATTGTTA+AGG | - | chr3.3:34959548-34959567 | None:intergenic | 25.0% |
| ! | AGGATAAACTTGTAAAACAA+TGG | + | chr3.3:34960032-34960051 | MS.gene050454:intron | 25.0% |
| ! | ATGTTCTTAAATATTAGGCT+TGG | - | chr3.3:34958758-34958777 | None:intergenic | 25.0% |
| ! | CAAGCATGTTCTTAAATATT+AGG | - | chr3.3:34958763-34958782 | None:intergenic | 25.0% |
| ! | CAATGATATATATAGAGATC+AGG | + | chr3.3:34958133-34958152 | MS.gene050454:CDS | 25.0% |
| ! | CTCTATATATATCATTGTCA+GGG | - | chr3.3:34958130-34958149 | None:intergenic | 25.0% |
| ! | GATGATTCTATTATCATCAA+TGG | + | chr3.3:34957526-34957545 | MS.gene050454:intron | 25.0% |
| ! | GTTATTGAATGTAGCTATAT+AGG | + | chr3.3:34957682-34957701 | MS.gene050454:intron | 25.0% |
| ! | TATCCAATATTGATGTATGT+CGG | - | chr3.3:34958005-34958024 | None:intergenic | 25.0% |
| ! | TCAATTTCTTTACTTCTTAG+TGG | - | chr3.3:34957660-34957679 | None:intergenic | 25.0% |
| ! | TCACCAAAAATAAAGATTTC+TGG | - | chr3.3:34959927-34959946 | None:intergenic | 25.0% |
| ! | TCTCTATATATATCATTGTC+AGG | - | chr3.3:34958131-34958150 | None:intergenic | 25.0% |
| ! | TGAAATCAAGAGTCATTAAT+TGG | + | chr3.3:34960485-34960504 | MS.gene050454:intron | 25.0% |
| ! | TGTAAAACAATGGACATATT+TGG | + | chr3.3:34960042-34960061 | MS.gene050454:intron | 25.0% |
| ! | TTGGAGAACTTAATGAAAAT+AGG | - | chr3.3:34960167-34960186 | None:intergenic | 25.0% |
| ! | TTGTGTAGATAATACTATGA+TGG | + | chr3.3:34959983-34960002 | MS.gene050454:intron | 25.0% |
| ! | TTGTTAAATAGATGCTATAG+TGG | + | chr3.3:34959680-34959699 | MS.gene050454:intron | 25.0% |
| ! | TTGTTGATCAAATAACTAGT+TGG | + | chr3.3:34958329-34958348 | MS.gene050454:intron | 25.0% |
| ! | TTTAAGGGAAGTAAAATTTC+AGG | - | chr3.3:34958875-34958894 | None:intergenic | 25.0% |
| !! | GTTAAACCTTCTGAAAATTT+CGG | + | chr3.3:34959126-34959145 | MS.gene050454:intron | 25.0% |
| !! | TAATACCAAAGAGCATATTA+CGG | - | chr3.3:34959745-34959764 | None:intergenic | 25.0% |
| !! | TTAAAATTTCTAGGTCAACA+GGG | - | chr3.3:34959019-34959038 | None:intergenic | 25.0% |
| !! | TTAAACTAGGCTAAGTTTTA+AGG | + | chr3.3:34958947-34958966 | MS.gene050454:intron | 25.0% |
| !! | TTGGATTAGATTGAAGTAAT+CGG | + | chr3.3:34958378-34958397 | MS.gene050454:intron | 25.0% |
| !! | TTTAAAATTTCTAGGTCAAC+AGG | - | chr3.3:34959020-34959039 | None:intergenic | 25.0% |
| !!! | AATCCGTTGATAATTGATAT+TGG | - | chr3.3:34960346-34960365 | None:intergenic | 25.0% |
| !!! | ATCCGTTGATAATTGATATT+GGG | - | chr3.3:34960345-34960364 | None:intergenic | 25.0% |
| !!! | CATTTGAGTCATTTTATAGT+TGG | - | chr3.3:34957955-34957974 | None:intergenic | 25.0% |
| !!! | CTTTTTTCAATTAGAAGTGT+CGG | + | chr3.3:34957738-34957757 | MS.gene050454:intron | 25.0% |
| !!! | GAAATCTTTATTTTTGGTGA+AGG | + | chr3.3:34959927-34959946 | MS.gene050454:intron | 25.0% |
| !!! | GGAATTAAAAAAGTTTGTTG+TGG | - | chr3.3:34960374-34960393 | None:intergenic | 25.0% |
| AAACTACAGCAATCAAACAA+AGG | - | chr3.3:34958988-34959007 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCACAC+AGG | + | chr3.3:34960319-34960338 | MS.gene050454:intron | 30.0% | |
| ACAAGATAACATGTAGAGTT+TGG | - | chr3.3:34959894-34959913 | None:intergenic | 30.0% | |
| ACGGAAAAAAAAAACCAGTT+TGG | + | chr3.3:34958359-34958378 | MS.gene050454:intron | 30.0% | |
| ATAAGTTTCCTGAGACTATT+TGG | + | chr3.3:34960093-34960112 | MS.gene050454:intron | 30.0% | |
| ATATTGAAATACCATGAAGC+CGG | - | chr3.3:34959466-34959485 | None:intergenic | 30.0% | |
| ATTAGATTGAAGTAATCGGA+TGG | + | chr3.3:34958382-34958401 | MS.gene050454:intron | 30.0% | |
| CAACAACATCACAAGAAAAA+TGG | - | chr3.3:34960559-34960578 | None:intergenic | 30.0% | |
| CAAGCATATAAACCAAGAAA+AGG | - | chr3.3:34957779-34957798 | None:intergenic | 30.0% | |
| GATGATGCTAAATATGAAAG+TGG | - | chr3.3:34958904-34958923 | None:intergenic | 30.0% | |
| GGAAGTAAAATTTCAGGATT+TGG | - | chr3.3:34958869-34958888 | None:intergenic | 30.0% | |
| GTGACCATGAAATTAATTCT+GGG | + | chr3.3:34959262-34959281 | MS.gene050454:CDS | 30.0% | |
| TAAGTTTCCTGAGACTATTT+GGG | + | chr3.3:34960094-34960113 | MS.gene050454:intron | 30.0% | |
| TACTTCAATCTAATCCAAAC+TGG | - | chr3.3:34958376-34958395 | None:intergenic | 30.0% | |
| TCGATAGGATGTTATACTTA+GGG | + | chr3.3:34960404-34960423 | MS.gene050454:intron | 30.0% | |
| TGTGACCATGAAATTAATTC+TGG | + | chr3.3:34959261-34959280 | MS.gene050454:CDS | 30.0% | |
| TTAATTACAAGTGTCAGTGT+CGG | - | chr3.3:34958564-34958583 | None:intergenic | 30.0% | |
| TTGACCCAGAATTAATTTCA+TGG | - | chr3.3:34959269-34959288 | None:intergenic | 30.0% | |
| TTGATCAAATAACTAGTTGG+TGG | + | chr3.3:34958332-34958351 | MS.gene050454:intron | 30.0% | |
| ! | ATTGTTTTCATGTTTTGTCC+AGG | - | chr3.3:34958794-34958813 | None:intergenic | 30.0% |
| ! | CATTTTTCTTGTGATGTTGT+TGG | + | chr3.3:34960557-34960576 | MS.gene050454:CDS | 30.0% |
| ! | GTTTTACAAGTTTATCCTTC+AGG | - | chr3.3:34960030-34960049 | None:intergenic | 30.0% |
| ! | TAAAATTTCTAGGTCAACAG+GGG | - | chr3.3:34959018-34959037 | None:intergenic | 30.0% |
| ! | TACTAACTCACAACTTGTTT+CGG | - | chr3.3:34958821-34958840 | None:intergenic | 30.0% |
| !! | AGTCAGTTTTAATGTCTGAT+TGG | + | chr3.3:34957438-34957457 | MS.gene050454:intron | 30.0% |
| !! | ATAACTAGTTGGTGGAAAAA+CGG | + | chr3.3:34958340-34958359 | MS.gene050454:intron | 30.0% |
| !! | TGGTTATTTTATGAGGAACT+TGG | + | chr3.3:34958457-34958476 | MS.gene050454:intron | 30.0% |
| !! | TTTTAAGGATAAACACCTGT+TGG | + | chr3.3:34959044-34959063 | MS.gene050454:intron | 30.0% |
| !!! | ATGTCTGATTGGAAGTATTT+TGG | + | chr3.3:34957449-34957468 | MS.gene050454:intron | 30.0% |
| AACCTAATTATCTCTCCTGA+AGG | + | chr3.3:34960012-34960031 | MS.gene050454:intron | 35.0% | |
| AATGTAGCTATATAGGTCAG+TGG | + | chr3.3:34957689-34957708 | MS.gene050454:intron | 35.0% | |
| ATCCTTCAGGAGAGATAATT+AGG | - | chr3.3:34960017-34960036 | None:intergenic | 35.0% | |
| ATTCCAGTGATTTAGTCGAT+AGG | + | chr3.3:34960389-34960408 | MS.gene050454:intron | 35.0% | |
| ATTGTTCAGAATTCTGGATC+AGG | + | chr3.3:34957844-34957863 | MS.gene050454:intron | 35.0% | |
| CAACATCACAAGAAAAATGG+AGG | - | chr3.3:34960556-34960575 | None:intergenic | 35.0% | |
| CTCTGCTCAATTTATCGTAA+TGG | + | chr3.3:34959156-34959175 | MS.gene050454:intron | 35.0% | |
| GAGAAAGAAGTAGAATAGCT+TGG | + | chr3.3:34957900-34957919 | MS.gene050454:CDS | 35.0% | |
| GATATAAATGAATGGCAGTG+TGG | + | chr3.3:34958176-34958195 | MS.gene050454:CDS | 35.0% | |
| GGATACAATTCCTGTGAAAT+TGG | + | chr3.3:34960425-34960444 | MS.gene050454:intron | 35.0% | |
| GGCCCAATATCAATTATCAA+CGG | + | chr3.3:34960340-34960359 | MS.gene050454:intron | 35.0% | |
| GTCGATAGGATGTTATACTT+AGG | + | chr3.3:34960403-34960422 | MS.gene050454:intron | 35.0% | |
| TGACCGACATACATCAATAT+TGG | + | chr3.3:34957999-34958018 | MS.gene050454:intron | 35.0% | |
| TGCTAACTATTTCCTTGAGA+AGG | + | chr3.3:34958700-34958719 | MS.gene050454:intron | 35.0% | |
| TGGAAAACAACTATCAGCTA+TGG | - | chr3.3:34959420-34959439 | None:intergenic | 35.0% | |
| TTGTTCCGTAATATGCTCTT+TGG | + | chr3.3:34959737-34959756 | MS.gene050454:intron | 35.0% | |
| ! | AAGCTACCGAAATTTTCAGA+AGG | - | chr3.3:34959135-34959154 | None:intergenic | 35.0% |
| ! | ATAATATCTCAAGAAGGTGC+AGG | + | chr3.3:34958099-34958118 | MS.gene050454:CDS | 35.0% |
| ! | CTAATTGAAAAAAGCGTGTC+AGG | - | chr3.3:34957732-34957751 | None:intergenic | 35.0% |
| ! | TCTAAGCTGATAGTGTATGA+AGG | + | chr3.3:34958497-34958516 | MS.gene050454:intron | 35.0% |
| !! | AGTTGTTTTCCAGTTAACGA+GGG | + | chr3.3:34959428-34959447 | MS.gene050454:CDS | 35.0% |
| !! | ATGAAAGTGGTGTTGCTTTA+AGG | - | chr3.3:34958891-34958910 | None:intergenic | 35.0% |
| !! | TAGTTGTTTTCCAGTTAACG+AGG | + | chr3.3:34959427-34959446 | MS.gene050454:CDS | 35.0% |
| !! | TCAACAATGAAGCATTGACA+CGG | - | chr3.3:34958656-34958675 | None:intergenic | 35.0% |
| !! | TGAAAGTGGTGTTGCTTTAA+GGG | - | chr3.3:34958890-34958909 | None:intergenic | 35.0% |
| ACAACTGCAACCAATTTCAC+AGG | - | chr3.3:34960438-34960457 | None:intergenic | 40.0% | |
| ATGTAGATTCAGATGCTGCA+AGG | + | chr3.3:34957413-34957432 | MS.gene050454:CDS | 40.0% | |
| ATGTCAAATAGTGGCTAACG+TGG | + | chr3.3:34959769-34959788 | MS.gene050454:intron | 40.0% | |
| GCAGTATTTGACGACATTTG+TGG | + | chr3.3:34958064-34958083 | MS.gene050454:intron | 40.0% | |
| TAACCACAAATCACTCCAAC+AGG | - | chr3.3:34959062-34959081 | None:intergenic | 40.0% | |
| TAATTGATATTGGGCCTGTG+TGG | - | chr3.3:34960336-34960355 | None:intergenic | 40.0% | |
| TCAAATTCCGCTACACAACA+GGG | - | chr3.3:34959803-34959822 | None:intergenic | 40.0% | |
| TTCAAATTCCGCTACACAAC+AGG | - | chr3.3:34959804-34959823 | None:intergenic | 40.0% | |
| TTGCAGCATCTGAATCTACA+TGG | - | chr3.3:34957414-34957433 | None:intergenic | 40.0% | |
| TTTGCAGCTTATAGCACAAG+TGG | - | chr3.3:34960301-34960320 | None:intergenic | 40.0% | |
| ! | ATGCCTTCAATCTGAGGTAT+CGG | - | chr3.3:34958524-34958543 | None:intergenic | 40.0% |
| ! | CATCCTATCGACTAAATCAC+TGG | - | chr3.3:34960395-34960414 | None:intergenic | 40.0% |
| ! | CTTGTGCTTTTCTTGCTTGT+CGG | + | chr3.3:34957795-34957814 | MS.gene050454:intron | 40.0% |
| ! | CTTTTCTTGCTTGTCGGAAT+TGG | + | chr3.3:34957801-34957820 | MS.gene050454:intron | 40.0% |
| !! | TTGTCATAAGCCGTTTTCAC+AGG | - | chr3.3:34960124-34960143 | None:intergenic | 40.0% |
| !!! | CTGCTTTTTGCTTAGCTGTA+AGG | + | chr3.3:34960461-34960480 | MS.gene050454:intron | 40.0% |
| AAGGCATGTCTGACATGTGT+CGG | + | chr3.3:34958537-34958556 | MS.gene050454:intron | 45.0% | |
| ACACCTGTTGGAGTGATTTG+TGG | + | chr3.3:34959056-34959075 | MS.gene050454:intron | 45.0% | |
| AGCTTGGAAGATCGTTCAAG+AGG | + | chr3.3:34957916-34957935 | MS.gene050454:CDS | 45.0% | |
| ATCTGTGGTTGACGACACTT+TGG | + | chr3.3:34959843-34959862 | MS.gene050454:intron | 45.0% | |
| CACATACATCTGCTAAGCAC+CGG | - | chr3.3:34959230-34959249 | None:intergenic | 45.0% | |
| CTTGCTTGTCGGAATTGGTA+TGG | + | chr3.3:34957806-34957825 | MS.gene050454:intron | 45.0% | |
| GAGCTCAGAAAAGTCCAAGA+TGG | - | chr3.3:34958728-34958747 | None:intergenic | 45.0% | |
| GCTGAATCCAGAAAGAAAGC+CGG | + | chr3.3:34959208-34959227 | MS.gene050454:intron | 45.0% | |
| GTTATAGCCCTGTTGTGTAG+CGG | + | chr3.3:34959793-34959812 | MS.gene050454:intron | 45.0% | |
| TCAGACATGCCTTCAATCTG+AGG | - | chr3.3:34958530-34958549 | None:intergenic | 45.0% | |
| TCCAAGATGGTACCTTCTCA+AGG | - | chr3.3:34958715-34958734 | None:intergenic | 45.0% | |
| TTTGGGAGAGCCTGTGAAAA+CGG | + | chr3.3:34960111-34960130 | MS.gene050454:intron | 45.0% | |
| ! | TTATTTCTTGCTGCAGCAGC+AGG | - | chr3.3:34959309-34959328 | None:intergenic | 45.0% |
| !! | TCCTTGAGAAGGTACCATCT+TGG | + | chr3.3:34958711-34958730 | MS.gene050454:intron | 45.0% |
| !! | TGAAGCATTGACACGGACAT+TGG | - | chr3.3:34958649-34958668 | None:intergenic | 45.0% |
| !!! | GTGCTATTTTCTGCGATCTG+TGG | + | chr3.3:34959828-34959847 | MS.gene050454:intron | 45.0% |
| !!! | TTAATAAATGTTATATTTTT+TGG | + | chr3.3:34958423-34958442 | MS.gene050454:intron | 5.0% |
| AACATGCTTGAGTCGTGTCC+TGG | + | chr3.3:34958773-34958792 | MS.gene050454:intron | 50.0% | |
| AGGCTCTCCCAAATAGTCTC+AGG | - | chr3.3:34960104-34960123 | None:intergenic | 50.0% | |
| ATTCTGGATCAGGAGCAGAG+TGG | + | chr3.3:34957854-34957873 | MS.gene050454:CDS | 50.0% | |
| CGGTGCTTAGCAGATGTATG+TGG | + | chr3.3:34959228-34959247 | MS.gene050454:CDS | 50.0% | |
| GGACCGATACCTCAGATTGA+AGG | + | chr3.3:34958518-34958537 | MS.gene050454:intron | 50.0% | |
| GTGGAAAGCCTTTCTCCAGA+GGG | + | chr3.3:34959607-34959626 | MS.gene050454:CDS | 50.0% | |
| !! | CTAAGCACCGGCTTTCTTTC+TGG | - | chr3.3:34959218-34959237 | None:intergenic | 50.0% |
| CGTGGAAAGCCTTTCTCCAG+AGG | + | chr3.3:34959606-34959625 | MS.gene050454:CDS | 55.0% | |
| TCAAATTACCCTGCGCCCTC+TGG | - | chr3.3:34959625-34959644 | None:intergenic | 55.0% | |
| TGTGATGCTCACACCTGCAC+TGG | + | chr3.3:34959582-34959601 | MS.gene050454:CDS | 55.0% | |
| AGGCTTTCCACGTCCAGTGC+AGG | - | chr3.3:34959598-34959617 | None:intergenic | 60.0% | |
| GCTGCAGGACCCTCGTTAAC+TGG | - | chr3.3:34959440-34959459 | None:intergenic | 60.0% | |
| GCTCACACCTGCACTGGACG+TGG | + | chr3.3:34959588-34959607 | MS.gene050454:CDS | 65.0% | |
| ! | ACCCTGCGCCCTCTGGAGAA+AGG | - | chr3.3:34959618-34959637 | None:intergenic | 65.0% |
| ! | AGCCTTTCTCCAGAGGGCGC+AGG | + | chr3.3:34959613-34959632 | MS.gene050454:CDS | 65.0% |
| ! | GCCTTTCTCCAGAGGGCGCA+GGG | + | chr3.3:34959614-34959633 | MS.gene050454:CDS | 65.0% |
| ACGAGGGTCCTGCAGCGAGC+CGG | + | chr3.3:34959444-34959463 | MS.gene050454:CDS | 70.0% | |
| ! | CCTGCAGCGAGCCGGCTTCA+TGG | + | chr3.3:34959452-34959471 | MS.gene050454:CDS | 70.0% |
| !! | CCATGAAGCCGGCTCGCTGC+AGG | - | chr3.3:34959455-34959474 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 34957409 | 34960613 | 34957409 | ID=MS.gene050454 |
| chr3.3 | mRNA | 34957409 | 34960613 | 34957409 | ID=MS.gene050454.t1;Parent=MS.gene050454 |
| chr3.3 | exon | 34957409 | 34957434 | 34957409 | ID=MS.gene050454.t1.exon1;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34957409 | 34957434 | 34957409 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| chr3.3 | exon | 34957853 | 34957937 | 34957853 | ID=MS.gene050454.t1.exon2;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34957853 | 34957937 | 34957853 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| chr3.3 | exon | 34958068 | 34958277 | 34958068 | ID=MS.gene050454.t1.exon3;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34958068 | 34958277 | 34958068 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| chr3.3 | exon | 34959219 | 34959341 | 34959219 | ID=MS.gene050454.t1.exon4;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34959219 | 34959341 | 34959219 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| chr3.3 | exon | 34959416 | 34959473 | 34959416 | ID=MS.gene050454.t1.exon5;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34959416 | 34959473 | 34959416 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| chr3.3 | exon | 34959562 | 34959635 | 34959562 | ID=MS.gene050454.t1.exon6;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34959562 | 34959635 | 34959562 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| chr3.3 | exon | 34960525 | 34960613 | 34960525 | ID=MS.gene050454.t1.exon7;Parent=MS.gene050454.t1 |
| chr3.3 | CDS | 34960525 | 34960613 | 34960525 | ID=cds.MS.gene050454.t1;Parent=MS.gene050454.t1 |
| Gene Sequence |
| Protein sequence |
