Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050610.t1 | XP_027349768.1 | 58.3 | 259 | 45 | 5 | 12 | 219 | 41 | 287 | 8.40E-65 | 256.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050610.t1 | Q9FPW6 | 52.9 | 263 | 57 | 5 | 12 | 219 | 42 | 292 | 1.2e-59 | 231.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050610.t1 | A0A151TXW0 | 57.7 | 260 | 46 | 5 | 12 | 219 | 42 | 289 | 7.9e-65 | 256.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050610.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050610.t1 | MTR_8g028190 | 53.668 | 259 | 57 | 5 | 12 | 219 | 40 | 286 | 1.28e-79 | 248 |
| MS.gene050610.t1 | MTR_8g028190 | 52.060 | 267 | 57 | 5 | 12 | 219 | 40 | 294 | 1.98e-78 | 245 |
| MS.gene050610.t1 | MTR_8g028190 | 65.027 | 183 | 39 | 5 | 50 | 219 | 156 | 326 | 1.52e-67 | 218 |
| MS.gene050610.t1 | MTR_4g088460 | 53.846 | 182 | 62 | 5 | 31 | 202 | 13 | 182 | 5.66e-49 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050610.t1 | AT3G61600 | 52.852 | 263 | 57 | 5 | 12 | 219 | 42 | 292 | 1.95e-80 | 251 |
| MS.gene050610.t1 | AT3G61600 | 52.852 | 263 | 57 | 5 | 12 | 219 | 42 | 292 | 1.97e-80 | 251 |
| MS.gene050610.t1 | AT2G46260 | 51.908 | 262 | 60 | 5 | 12 | 219 | 41 | 290 | 4.95e-79 | 247 |
| MS.gene050610.t1 | AT4G01160 | 46.862 | 239 | 81 | 8 | 7 | 218 | 16 | 235 | 6.19e-46 | 159 |
| MS.gene050610.t1 | AT4G01160 | 41.634 | 257 | 82 | 7 | 7 | 214 | 16 | 253 | 8.24e-42 | 148 |
Find 47 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTGCATCATCAATTAT+TGG | 0.191147 | 7.3:-1335783 | None:intergenic |
| CACATCGCCACCTGCATTGC+TGG | 0.336903 | 7.3:+1335614 | MS.gene050610:CDS |
| ATCTGAGGATAGATTGATAT+TGG | 0.342714 | 7.3:-1333158 | None:intergenic |
| GAGGACATCAAGAATGAAAA+TGG | 0.348170 | 7.3:+1333286 | MS.gene050610:CDS |
| GCATTAGAATGAGTTTCAAT+TGG | 0.412135 | 7.3:-1333211 | None:intergenic |
| GCTGAACTGCATCAGCCATT+AGG | 0.419691 | 7.3:-1335761 | None:intergenic |
| GCACATCAGCTCTCCCATCC+TGG | 0.437289 | 7.3:+1335322 | MS.gene050610:CDS |
| GCTTCCATCAAGTGTCCTAA+TGG | 0.441056 | 7.3:+1335746 | MS.gene050610:CDS |
| TGCATTGCTGGACGTGTTGA+TGG | 0.443955 | 7.3:+1335626 | MS.gene050610:CDS |
| TTCATTAATGACTAGGTATG+AGG | 0.444435 | 7.3:+1335898 | MS.gene050610:intron |
| ACTCTCAGAATTACTGCATC+TGG | 0.449046 | 7.3:+1335446 | MS.gene050610:CDS |
| GCAAACAAAATTATAGAAGA+AGG | 0.455531 | 7.3:-1335357 | None:intergenic |
| CTTGCTTGAGATACTGCATC+CGG | 0.464957 | 7.3:+1335673 | MS.gene050610:CDS |
| GGATGGGAGAGCTGATGTGC+AGG | 0.465803 | 7.3:-1335319 | None:intergenic |
| TCAGCCATTAGGACACTTGA+TGG | 0.476442 | 7.3:-1335750 | None:intergenic |
| GACTAGGTATGAGGAGGAGC+TGG | 0.478031 | 7.3:+1335907 | MS.gene050610:intron |
| CAGTGCAGACTCGGGTGTCA+TGG | 0.478958 | 7.3:-1335712 | None:intergenic |
| TAGGTAGAGCAGTGCAGACT+CGG | 0.479061 | 7.3:-1335721 | None:intergenic |
| ATCAACACGTCCAGCAATGC+AGG | 0.487605 | 7.3:-1335624 | None:intergenic |
| ATGAGGAGGAGCTGGAGTAA+AGG | 0.503563 | 7.3:+1335915 | MS.gene050610:CDS |
| AGTGCAGACTCGGGTGTCAT+GGG | 0.534326 | 7.3:-1335711 | None:intergenic |
| CCTCTCTTATCCTCTTGTTG+TGG | 0.537451 | 7.3:-1333267 | None:intergenic |
| CAAACAAAATTATAGAAGAA+GGG | 0.544330 | 7.3:-1335356 | None:intergenic |
| AATTTGAAGTATTCTATCTG+AGG | 0.574059 | 7.3:-1333173 | None:intergenic |
| TGGGTATATTCCGCAATACC+CGG | 0.581402 | 7.3:-1335692 | None:intergenic |
| TATTATTTATATAGGTGATG+AGG | 0.585422 | 7.3:+1335262 | MS.gene050610:intron |
| AAATTCAAGAGCTCCGCAAG+AGG | 0.590289 | 7.3:-1335564 | None:intergenic |
| ACTTCGTTACATCTTTGTAA+CGG | 0.594668 | 7.3:-1335818 | None:intergenic |
| TGAAACTCATTCTAATGCCG+AGG | 0.596747 | 7.3:+1333216 | MS.gene050610:CDS |
| GGACACTTGATGGAAGCTCT+AGG | 0.603702 | 7.3:-1335740 | None:intergenic |
| AGGTAGAGCAGTGCAGACTC+GGG | 0.606407 | 7.3:-1335720 | None:intergenic |
| GGCAGCGGACAAATATGAAG+TGG | 0.609138 | 7.3:+1335647 | MS.gene050610:CDS |
| GATACTGCATCCGGGTATTG+CGG | 0.612514 | 7.3:+1335682 | MS.gene050610:CDS |
| GCTAGCCCAATCTGCACTTG+AGG | 0.619398 | 7.3:-1333245 | None:intergenic |
| ATTGGGCTAGCCACAACAAG+AGG | 0.620408 | 7.3:+1333257 | MS.gene050610:CDS |
| ATTAATGACTAGGTATGAGG+AGG | 0.621774 | 7.3:+1335901 | MS.gene050610:intron |
| TTGCTTGAGATACTGCATCC+GGG | 0.628101 | 7.3:+1335674 | MS.gene050610:CDS |
| GATGCAAAGCAATACCTCGT+TGG | 0.628235 | 7.3:+1335795 | MS.gene050610:CDS |
| TATTTATATAGGTGATGAGG+CGG | 0.631066 | 7.3:+1335265 | MS.gene050610:intron |
| GCTGGACGTGTTGATGGCAG+CGG | 0.635739 | 7.3:+1335632 | MS.gene050610:CDS |
| GATGGGAGAGCTGATGTGCA+GGG | 0.638934 | 7.3:-1335318 | None:intergenic |
| GGATGAGGGAGTCAGAGCAG+AGG | 0.654606 | 7.3:+1335417 | MS.gene050610:CDS |
| AACACGTCCAGCAATGCAGG+TGG | 0.664085 | 7.3:-1335621 | None:intergenic |
| CATCTTTGTAACGGCCAACG+AGG | 0.669584 | 7.3:-1335809 | None:intergenic |
| CCACAACAAGAGGATAAGAG+AGG | 0.671509 | 7.3:+1333267 | MS.gene050610:CDS |
| TACAGAGGAAGCTCCTCTTG+CGG | 0.671883 | 7.3:+1335551 | MS.gene050610:intron |
| TGAGGCGGCTAATTGCTCTG+CGG | 0.792540 | 7.3:+1335280 | MS.gene050610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTTATATTTAATGAAA+CGG | - | chr7.3:1334340-1334359 | None:intergenic | 10.0% |
| !!! | AATACTTTTTTTTTTTTATG+GGG | + | chr7.3:1335098-1335117 | MS.gene050610:intron | 10.0% |
| !!! | CAATACTTTTTTTTTTTTAT+GGG | + | chr7.3:1335097-1335116 | MS.gene050610:intron | 10.0% |
| !!! | GGTATATTAATTTTTTTAAA+TGG | + | chr7.3:1333931-1333950 | MS.gene050610:intron | 10.0% |
| !!! | TCAATACTTTTTTTTTTTTA+TGG | + | chr7.3:1335096-1335115 | MS.gene050610:intron | 10.0% |
| !!! | TTTTATTTCTTTTTTATGTT+TGG | + | chr7.3:1334450-1334469 | MS.gene050610:intron | 10.0% |
| !! | TAAAAATGTTCTTAAATTTG+TGG | - | chr7.3:1333696-1333715 | None:intergenic | 15.0% |
| !! | TAGCCAAAAAATAAATTAAT+GGG | - | chr7.3:1334131-1334150 | None:intergenic | 15.0% |
| !! | TATAACAAAGATAAATTAAG+TGG | - | chr7.3:1335854-1335873 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGACAAGAATTTT+AGG | - | chr7.3:1333545-1333564 | None:intergenic | 15.0% |
| !!! | ATTTGGGTTATTATTTATAT+AGG | + | chr7.3:1335254-1335273 | MS.gene050610:intron | 15.0% |
| !!! | ATTTTACTTTATTTTTGACA+AGG | + | chr7.3:1334375-1334394 | MS.gene050610:intron | 15.0% |
| !!! | TTAAGTTTTTTGTTTCTTTT+GGG | - | chr7.3:1334078-1334097 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTTGTTTCTTT+TGG | - | chr7.3:1334079-1334098 | None:intergenic | 15.0% |
| !!! | TTTTGTGTTTTTTTATTTTC+CGG | + | chr7.3:1333342-1333361 | MS.gene050610:intron | 15.0% |
| !! | AACTTAAATATGTCTTTCAA+AGG | + | chr7.3:1333738-1333757 | MS.gene050610:intron | 20.0% |
| !! | AATAAGTTTCATTAATGACT+AGG | + | chr7.3:1335891-1335910 | MS.gene050610:intron | 20.0% |
| !! | AGCCAAAAAATAAATTAATG+GGG | - | chr7.3:1334130-1334149 | None:intergenic | 20.0% |
| !! | ATATCAAATGAACCATATTA+GGG | + | chr7.3:1333667-1333686 | MS.gene050610:intron | 20.0% |
| !! | ATTATCTGTCAAATATTCAT+TGG | + | chr7.3:1334596-1334615 | MS.gene050610:intron | 20.0% |
| !! | CAAACAAAATTATAGAAGAA+GGG | - | chr7.3:1335359-1335378 | None:intergenic | 20.0% |
| !! | GATCTTTACAATAAATGTAA+AGG | - | chr7.3:1334637-1334656 | None:intergenic | 20.0% |
| !! | GTAGCCAAAAAATAAATTAA+TGG | - | chr7.3:1334132-1334151 | None:intergenic | 20.0% |
| !! | TATTATTTATATAGGTGATG+AGG | + | chr7.3:1335262-1335281 | MS.gene050610:intron | 20.0% |
| !!! | TAAGTTTTTTGTTTCTTTTG+GGG | - | chr7.3:1334077-1334096 | None:intergenic | 20.0% |
| !!! | TACCCCATTAATTTATTTTT+TGG | + | chr7.3:1334125-1334144 | MS.gene050610:intron | 20.0% |
| !!! | TATATTCAAGACATTTTCTA+AGG | + | chr7.3:1333500-1333519 | MS.gene050610:intron | 20.0% |
| !!! | TTTAAAACAACAAAAGTGTT+TGG | - | chr7.3:1334156-1334175 | None:intergenic | 20.0% |
| !!! | TTTACTCAATGATTTGATTT+GGG | + | chr7.3:1335238-1335257 | MS.gene050610:intron | 20.0% |
| !!! | TTTATACTTTCTCTAGAAAT+TGG | + | chr7.3:1333612-1333631 | MS.gene050610:intron | 20.0% |
| ! | AACACAAAATGTAAGAGTTT+AGG | - | chr7.3:1333331-1333350 | None:intergenic | 25.0% |
| ! | AATCAAATCATTGAGTAAAG+CGG | - | chr7.3:1335237-1335256 | None:intergenic | 25.0% |
| ! | CATATCAAATGAACCATATT+AGG | + | chr7.3:1333666-1333685 | MS.gene050610:intron | 25.0% |
| ! | CTTTACTCAATGATTTGATT+TGG | + | chr7.3:1335237-1335256 | MS.gene050610:intron | 25.0% |
| ! | GAAACTTATTAGCATTCAAA+AGG | - | chr7.3:1335881-1335900 | None:intergenic | 25.0% |
| ! | GAAGTCAAATTTATGCATAA+TGG | - | chr7.3:1334225-1334244 | None:intergenic | 25.0% |
| ! | GCAAACAAAATTATAGAAGA+AGG | - | chr7.3:1335360-1335379 | None:intergenic | 25.0% |
| ! | TGTGTTTATGAAACTATTCA+AGG | + | chr7.3:1333454-1333473 | MS.gene050610:intron | 25.0% |
| ! | TTGACAGATAATCAATTATC+CGG | - | chr7.3:1334588-1334607 | None:intergenic | 25.0% |
| !! | AATTTGAAGTATTCTATCTG+AGG | - | chr7.3:1333176-1333195 | None:intergenic | 25.0% |
| !!! | AGACAAGAATTTTAGGTTTA+TGG | - | chr7.3:1333538-1333557 | None:intergenic | 25.0% |
| !!! | AGACATTTTCTAAGGATATA+AGG | + | chr7.3:1333508-1333527 | MS.gene050610:intron | 25.0% |
| AATTTGTGGAAACCCTAATA+TGG | - | chr7.3:1333682-1333701 | None:intergenic | 30.0% | |
| ACTAATAGATCTCCCAAAAA+TGG | - | chr7.3:1335030-1335049 | None:intergenic | 30.0% | |
| ACTTCGTTACATCTTTGTAA+CGG | - | chr7.3:1335821-1335840 | None:intergenic | 30.0% | |
| ATCAAATCATTGAGTAAAGC+GGG | - | chr7.3:1335236-1335255 | None:intergenic | 30.0% | |
| ATCTGAGGATAGATTGATAT+TGG | - | chr7.3:1333161-1333180 | None:intergenic | 30.0% | |
| CCTCTTAAATAGCAGAAATT+GGG | - | chr7.3:1334688-1334707 | None:intergenic | 30.0% | |
| CTTACATAATGTCTCACTTT+CGG | - | chr7.3:1333407-1333426 | None:intergenic | 30.0% | |
| GAAAGTTATTGTGATTCATC+TGG | + | chr7.3:1333571-1333590 | MS.gene050610:intron | 30.0% | |
| GCATTAGAATGAGTTTCAAT+TGG | - | chr7.3:1333214-1333233 | None:intergenic | 30.0% | |
| TATGATTTCCGTGGAAAAAA+GGG | - | chr7.3:1333792-1333811 | None:intergenic | 30.0% | |
| TATTTATATAGGTGATGAGG+CGG | + | chr7.3:1335265-1335284 | MS.gene050610:intron | 30.0% | |
| TCCTCTTAAATAGCAGAAAT+TGG | - | chr7.3:1334689-1334708 | None:intergenic | 30.0% | |
| TGCTTTGCATCATCAATTAT+TGG | - | chr7.3:1335786-1335805 | None:intergenic | 30.0% | |
| TTAACTAGAATCACAACACA+AGG | - | chr7.3:1335154-1335173 | None:intergenic | 30.0% | |
| TTCATTAATGACTAGGTATG+AGG | + | chr7.3:1335898-1335917 | MS.gene050610:intron | 30.0% | |
| TTTGTAAGACATTACCAAAC+TGG | - | chr7.3:1333856-1333875 | None:intergenic | 30.0% | |
| TTTGTAAGACATTACGAAAC+TGG | + | chr7.3:1333987-1334006 | MS.gene050610:intron | 30.0% | |
| ! | AAGCTACTACAATTTTTACG+AGG | - | chr7.3:1334479-1334498 | None:intergenic | 30.0% |
| ! | AGCTACTACAATTTTTACGA+GGG | - | chr7.3:1334478-1334497 | None:intergenic | 30.0% |
| ! | ATGATTTGTCAACCATTGAT+TGG | - | chr7.3:1334665-1334684 | None:intergenic | 30.0% |
| ! | CTTAAAACCTTTGTTTACTC+TGG | + | chr7.3:1334746-1334765 | MS.gene050610:intron | 30.0% |
| ! | TTGCAGCTTTTCTCAAAAAA+CGG | + | chr7.3:1335395-1335414 | MS.gene050610:CDS | 30.0% |
| !! | ATTTTTGGGAGATCTATTAG+TGG | + | chr7.3:1335029-1335048 | MS.gene050610:intron | 30.0% |
| !! | GAGACATTATGTAAGTTGAT+TGG | + | chr7.3:1333412-1333431 | MS.gene050610:intron | 30.0% |
| !! | TGAAGTGTTTTGGATTACTT+AGG | + | chr7.3:1333764-1333783 | MS.gene050610:intron | 30.0% |
| !!! | TTACCAAACTGGTTTTTCAA+CGG | - | chr7.3:1333845-1333864 | None:intergenic | 30.0% |
| !!! | TTACGAAACTGGTTTTTCAA+CGG | + | chr7.3:1333998-1334017 | MS.gene050610:intron | 30.0% |
| AAAGATCTACCACCAATCAA+TGG | + | chr7.3:1334650-1334669 | MS.gene050610:intron | 35.0% | |
| ATTAATGACTAGGTATGAGG+AGG | + | chr7.3:1335901-1335920 | MS.gene050610:intron | 35.0% | |
| CAGATAATCAATTATCCGGA+AGG | - | chr7.3:1334584-1334603 | None:intergenic | 35.0% | |
| CTAAGCATAGCAAACAAATC+AGG | - | chr7.3:1335508-1335527 | None:intergenic | 35.0% | |
| GAGGACATCAAGAATGAAAA+TGG | + | chr7.3:1333286-1333305 | MS.gene050610:CDS | 35.0% | |
| GTATGATTTCCGTGGAAAAA+AGG | - | chr7.3:1333793-1333812 | None:intergenic | 35.0% | |
| TATCCGTTGAAAAACCAGTT+TGG | + | chr7.3:1333839-1333858 | MS.gene050610:intron | 35.0% | |
| TTTCTCAAAAAACGGGATGA+GGG | + | chr7.3:1335403-1335422 | MS.gene050610:CDS | 35.0% | |
| TTTCTCTTTGCATGTTACAG+AGG | + | chr7.3:1335536-1335555 | MS.gene050610:intron | 35.0% | |
| ! | ACGTCTATTTGCTCCATTTT+TGG | + | chr7.3:1335014-1335033 | MS.gene050610:intron | 35.0% |
| ! | ATTTGTCAACCATTGATTGG+TGG | - | chr7.3:1334662-1334681 | None:intergenic | 35.0% |
| ! | ATTTTTCCTCAAGTGCAGAT+TGG | + | chr7.3:1333239-1333258 | MS.gene050610:CDS | 35.0% |
| ! | CCCAATTTCTGCTATTTAAG+AGG | + | chr7.3:1334685-1334704 | MS.gene050610:intron | 35.0% |
| ! | CTACTACAATTTTTACGAGG+GGG | - | chr7.3:1334476-1334495 | None:intergenic | 35.0% |
| ! | GCTACTACAATTTTTACGAG+GGG | - | chr7.3:1334477-1334496 | None:intergenic | 35.0% |
| ! | TGCAGCTTTTCTCAAAAAAC+GGG | + | chr7.3:1335396-1335415 | MS.gene050610:CDS | 35.0% |
| ! | TTTTCTCAAAAAACGGGATG+AGG | + | chr7.3:1335402-1335421 | MS.gene050610:CDS | 35.0% |
| ! | TTTTTCCTCAAGTGCAGATT+GGG | + | chr7.3:1333240-1333259 | MS.gene050610:CDS | 35.0% |
| !! | CGTCTATTTGCTCCATTTTT+GGG | + | chr7.3:1335015-1335034 | MS.gene050610:intron | 35.0% |
| !! | TTTTTCAACGGATACCATAC+CGG | + | chr7.3:1334010-1334029 | MS.gene050610:intron | 35.0% |
| !! | TTTTTCAACGGATACCATAC+CGG | - | chr7.3:1334029-1334010 | None:intergenic | 35.0% |
| ACAATAACATAACCCCGGTA+TGG | + | chr7.3:1333816-1333835 | MS.gene050610:intron | 40.0% | |
| ACCGAACAATAACATAACCC+CGG | + | chr7.3:1333811-1333830 | MS.gene050610:intron | 40.0% | |
| ACCGGGGTTATGTTATTGTT+CGG | - | chr7.3:1333815-1333834 | None:intergenic | 40.0% | |
| ACTCTCAGAATTACTGCATC+TGG | + | chr7.3:1335446-1335465 | MS.gene050610:CDS | 40.0% | |
| ATCTGTGAAACATTTGCAGG+AGG | - | chr7.3:1334900-1334919 | None:intergenic | 40.0% | |
| ATTGTTCGGTATGATTTCCG+TGG | - | chr7.3:1333801-1333820 | None:intergenic | 40.0% | |
| CATAATGTCTCACTTTCGGA+AGG | - | chr7.3:1333403-1333422 | None:intergenic | 40.0% | |
| CCCTCTAGTATCTCAAAAAC+CGG | - | chr7.3:1333364-1333383 | None:intergenic | 40.0% | |
| GAGCAAATAGACGTAACGAA+AGG | - | chr7.3:1335008-1335027 | None:intergenic | 40.0% | |
| TGAAACTCATTCTAATGCCG+AGG | + | chr7.3:1333216-1333235 | MS.gene050610:CDS | 40.0% | |
| TGCACTTGAGGAAAAATCCT+CGG | - | chr7.3:1333236-1333255 | None:intergenic | 40.0% | |
| TGCATCTGTGAAACATTTGC+AGG | - | chr7.3:1334903-1334922 | None:intergenic | 40.0% | |
| TGTCGATGGAGTCTAGTAAT+AGG | + | chr7.3:1335064-1335083 | MS.gene050610:intron | 40.0% | |
| TTATAGTCATGGGGTAGCAT+TGG | + | chr7.3:1334048-1334067 | MS.gene050610:intron | 40.0% | |
| TTATTGTGATTCATCTGGCG+TGG | + | chr7.3:1333576-1333595 | MS.gene050610:intron | 40.0% | |
| TTTGTGACGAATTGCCGAAT+CGG | + | chr7.3:1334557-1334576 | MS.gene050610:intron | 40.0% | |
| ! | CTGCTATTTAAGAGGAGAAC+CGG | + | chr7.3:1334693-1334712 | MS.gene050610:intron | 40.0% |
| ! | GGATTTTCGAAACTTGTCGA+TGG | + | chr7.3:1335050-1335069 | MS.gene050610:intron | 40.0% |
| ! | TGCTATTTAAGAGGAGAACC+GGG | + | chr7.3:1334694-1334713 | MS.gene050610:intron | 40.0% |
| ! | TGTCTACAATGGACTCACAA+TGG | + | chr7.3:1334927-1334946 | MS.gene050610:intron | 40.0% |
| ! | TTTTCAACGGATACCATACC+GGG | - | chr7.3:1334030-1334011 | None:intergenic | 40.0% |
| !! | AATGTCACGAGTTCAAGTTG+TGG | + | chr7.3:1334868-1334887 | MS.gene050610:intron | 40.0% |
| !! | TCAAATTTGAAAGCACCGCT+GGG | - | chr7.3:1334772-1334791 | None:intergenic | 40.0% |
| !! | TGTGTTATTTGATCCTGCCA+TGG | + | chr7.3:1334813-1334832 | MS.gene050610:intron | 40.0% |
| !! | TTCAAATTTGAAAGCACCGC+TGG | - | chr7.3:1334773-1334792 | None:intergenic | 40.0% |
| !!! | CCGGTTTTTGAGATACTAGA+GGG | + | chr7.3:1333361-1333380 | MS.gene050610:intron | 40.0% |
| !!! | TCAAAGGTGCTGAAGTGTTT+TGG | + | chr7.3:1333754-1333773 | MS.gene050610:intron | 40.0% |
| !!! | TCCGGTTTTTGAGATACTAG+AGG | + | chr7.3:1333360-1333379 | MS.gene050610:intron | 40.0% |
| AAATTCAAGAGCTCCGCAAG+AGG | - | chr7.3:1335567-1335586 | None:intergenic | 45.0% | |
| ACGTAACGAAAGGAACAACC+TGG | - | chr7.3:1334998-1335017 | None:intergenic | 45.0% | |
| AGATGCAGAGCTGTCTACAA+TGG | + | chr7.3:1334916-1334935 | MS.gene050610:intron | 45.0% | |
| ATTATCCGGAAGGTCCGATT+CGG | - | chr7.3:1334574-1334593 | None:intergenic | 45.0% | |
| CCACAACAAGAGGATAAGAG+AGG | + | chr7.3:1333267-1333286 | MS.gene050610:CDS | 45.0% | |
| CCTCTCTTATCCTCTTGTTG+TGG | - | chr7.3:1333270-1333289 | None:intergenic | 45.0% | |
| CTTGCTTGAGATACTGCATC+CGG | + | chr7.3:1335673-1335692 | MS.gene050610:CDS | 45.0% | |
| GATGCAAAGCAATACCTCGT+TGG | + | chr7.3:1335795-1335814 | MS.gene050610:CDS | 45.0% | |
| GCTATTTAAGAGGAGAACCG+GGG | + | chr7.3:1334695-1334714 | MS.gene050610:intron | 45.0% | |
| GCTTCCATCAAGTGTCCTAA+TGG | + | chr7.3:1335746-1335765 | MS.gene050610:CDS | 45.0% | |
| TCAGCCATTAGGACACTTGA+TGG | - | chr7.3:1335753-1335772 | None:intergenic | 45.0% | |
| TGGGTATATTCCGCAATACC+CGG | - | chr7.3:1335695-1335714 | None:intergenic | 45.0% | |
| TTGCTTGAGATACTGCATCC+GGG | + | chr7.3:1335674-1335693 | MS.gene050610:CDS | 45.0% | |
| TTTCAACGGATACCATACCG+GGG | - | chr7.3:1334031-1334012 | None:intergenic | 45.0% | |
| ! | CGAAGGGCTTTATAGTCATG+GGG | + | chr7.3:1334039-1334058 | MS.gene050610:intron | 45.0% |
| ! | GCGAAGGGCTTTATAGTCAT+GGG | + | chr7.3:1334038-1334057 | MS.gene050610:intron | 45.0% |
| !! | TGTGTGTTACTTTGATGCCC+CGG | - | chr7.3:1334715-1334734 | None:intergenic | 45.0% |
| !!! | CATTTTAAAAAAATTTAAAA+TGG | - | chr7.3:1333912-1333931 | None:intergenic | 5.0% |
| !!! | CATTTTAAATTTTTTTAAAA+TGG | + | chr7.3:1333910-1333929 | MS.gene050610:intron | 5.0% |
| !!! | TATTTTCTTTATTTTTTTTA+AGG | + | chr7.3:1334293-1334312 | MS.gene050610:intron | 5.0% |
| AATTGCCGAATCGGACCTTC+CGG | + | chr7.3:1334566-1334585 | MS.gene050610:intron | 50.0% | |
| ATAAAACTCCCGCCATGGCA+GGG | - | chr7.3:1334971-1334990 | None:intergenic | 50.0% | |
| ATCAACACGTCCAGCAATGC+AGG | - | chr7.3:1335627-1335646 | None:intergenic | 50.0% | |
| CAACTCCGATCATTGAGCCA+TGG | - | chr7.3:1334833-1334852 | None:intergenic | 50.0% | |
| CATCTTTGTAACGGCCAACG+AGG | - | chr7.3:1335812-1335831 | None:intergenic | 50.0% | |
| GATCAACATACCGTTGAGCC+CGG | - | chr7.3:1334514-1334533 | None:intergenic | 50.0% | |
| GCTGAACTGCATCAGCCATT+AGG | - | chr7.3:1335764-1335783 | None:intergenic | 50.0% | |
| GGACACTTGATGGAAGCTCT+AGG | - | chr7.3:1335743-1335762 | None:intergenic | 50.0% | |
| GGCAGCGGACAAATATGAAG+TGG | + | chr7.3:1335647-1335666 | MS.gene050610:CDS | 50.0% | |
| GTAGCTTCGCTGTTGCATAC+CGG | + | chr7.3:1334492-1334511 | MS.gene050610:intron | 50.0% | |
| GTGCTATAAAACTCCCGCCA+TGG | - | chr7.3:1334976-1334995 | None:intergenic | 50.0% | |
| TACAGAGGAAGCTCCTCTTG+CGG | + | chr7.3:1335551-1335570 | MS.gene050610:intron | 50.0% | |
| TAGCTTCGCTGTTGCATACC+GGG | + | chr7.3:1334493-1334512 | MS.gene050610:intron | 50.0% | |
| TAGGTAGAGCAGTGCAGACT+CGG | - | chr7.3:1335724-1335743 | None:intergenic | 50.0% | |
| TATAAAACTCCCGCCATGGC+AGG | - | chr7.3:1334972-1334991 | None:intergenic | 50.0% | |
| TCCTGCCATGGCTCAATGAT+CGG | + | chr7.3:1334825-1334844 | MS.gene050610:intron | 50.0% | |
| TGCATTGCTGGACGTGTTGA+TGG | + | chr7.3:1335626-1335645 | MS.gene050610:CDS | 50.0% | |
| ! | CTTTGTTTACTCTGGCCCAG+CGG | + | chr7.3:1334754-1334773 | MS.gene050610:intron | 50.0% |
| ! | GATACTGCATCCGGGTATTG+CGG | + | chr7.3:1335682-1335701 | MS.gene050610:CDS | 50.0% |
| ! | GGCGAAGGGCTTTATAGTCA+TGG | + | chr7.3:1334037-1334056 | MS.gene050610:intron | 50.0% |
| !! | ATTGGGCTAGCCACAACAAG+AGG | + | chr7.3:1333257-1333276 | MS.gene050610:CDS | 50.0% |
| !!! | CTTAGGCGCCCTTTTTTCCA+CGG | + | chr7.3:1333781-1333800 | MS.gene050610:intron | 50.0% |
| AACACGTCCAGCAATGCAGG+TGG | - | chr7.3:1335624-1335643 | None:intergenic | 55.0% | |
| AACGGATACCATACCGGCAG+GGG | + | chr7.3:1334016-1334035 | MS.gene050610:intron | 55.0% | |
| AGGTAGAGCAGTGCAGACTC+GGG | - | chr7.3:1335723-1335742 | None:intergenic | 55.0% | |
| CAACGGATACCATACCGGCA+GGG | + | chr7.3:1334015-1334034 | MS.gene050610:intron | 55.0% | |
| CGCTGGGCCAGAGTAAACAA+AGG | - | chr7.3:1334756-1334775 | None:intergenic | 55.0% | |
| CTGTTGCATACCGGGCTCAA+CGG | + | chr7.3:1334501-1334520 | MS.gene050610:intron | 55.0% | |
| GACTAGGTATGAGGAGGAGC+TGG | + | chr7.3:1335907-1335926 | MS.gene050610:intron | 55.0% | |
| GATGGGAGAGCTGATGTGCA+GGG | - | chr7.3:1335321-1335340 | None:intergenic | 55.0% | |
| GCTAGCCCAATCTGCACTTG+AGG | - | chr7.3:1333248-1333267 | None:intergenic | 55.0% | |
| GGCAGGGTTCACAGAAGGAT+CGG | - | chr7.3:1334955-1334974 | None:intergenic | 55.0% | |
| TCAACGGATACCATACCGGC+AGG | + | chr7.3:1334014-1334033 | MS.gene050610:intron | 55.0% | |
| TCCGATCATTGAGCCATGGC+AGG | - | chr7.3:1334829-1334848 | None:intergenic | 55.0% | |
| TCCTTCTGTGAACCCTGCCA+TGG | + | chr7.3:1334956-1334975 | MS.gene050610:intron | 55.0% | |
| TGAGGCGGCTAATTGCTCTG+CGG | + | chr7.3:1335280-1335299 | MS.gene050610:CDS | 55.0% | |
| TTCTGTGAACCCTGCCATGG+CGG | + | chr7.3:1334959-1334978 | MS.gene050610:intron | 55.0% | |
| ! | AGAAGGGACTTTTCGCAGCC+AGG | - | chr7.3:1335343-1335362 | None:intergenic | 55.0% |
| ! | AGTGCAGACTCGGGTGTCAT+GGG | - | chr7.3:1335714-1335733 | None:intergenic | 55.0% |
| ! | GGACTTTTCGCAGCCAGGAT+GGG | - | chr7.3:1335338-1335357 | None:intergenic | 55.0% |
| !! | GGCGGGAGTTTTATAGCACC+AGG | + | chr7.3:1334977-1334996 | MS.gene050610:intron | 55.0% |
| ATAAAGCCCTTCGCCCCTGC+CGG | - | chr7.3:1334032-1334051 | None:intergenic | 60.0% | |
| CACATCGCCACCTGCATTGC+TGG | + | chr7.3:1335614-1335633 | MS.gene050610:CDS | 60.0% | |
| CAGTGCAGACTCGGGTGTCA+TGG | - | chr7.3:1335715-1335734 | None:intergenic | 60.0% | |
| GCACATCAGCTCTCCCATCC+TGG | + | chr7.3:1335322-1335341 | MS.gene050610:CDS | 60.0% | |
| GCCATGGCAGGGTTCACAGA+AGG | - | chr7.3:1334960-1334979 | None:intergenic | 60.0% | |
| GGATGAGGGAGTCAGAGCAG+AGG | + | chr7.3:1335417-1335436 | MS.gene050610:CDS | 60.0% | |
| GGATGGGAGAGCTGATGTGC+AGG | - | chr7.3:1335322-1335341 | None:intergenic | 60.0% | |
| TCTGTGAACCCTGCCATGGC+GGG | + | chr7.3:1334960-1334979 | MS.gene050610:intron | 60.0% | |
| ! | GGGACTTTTCGCAGCCAGGA+TGG | - | chr7.3:1335339-1335358 | None:intergenic | 60.0% |
| !! | GCTGGACGTGTTGATGGCAG+CGG | + | chr7.3:1335632-1335651 | MS.gene050610:CDS | 60.0% |
| ACCATACCGGCAGGGGCGAA+GGG | + | chr7.3:1334023-1334042 | MS.gene050610:intron | 65.0% | |
| TACCATACCGGCAGGGGCGA+AGG | + | chr7.3:1334022-1334041 | MS.gene050610:intron | 65.0% | |
| GCCCTTCGCCCCTGCCGGTA+TGG | - | chr7.3:1334027-1334046 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1333142 | 1335934 | 1333142 | ID=MS.gene050610 |
| chr7.3 | mRNA | 1333142 | 1335934 | 1333142 | ID=MS.gene050610.t1;Parent=MS.gene050610 |
| chr7.3 | exon | 1333142 | 1333307 | 1333142 | ID=MS.gene050610.t1.exon1;Parent=MS.gene050610.t1 |
| chr7.3 | CDS | 1333142 | 1333307 | 1333142 | ID=cds.MS.gene050610.t1;Parent=MS.gene050610.t1 |
| chr7.3 | exon | 1335276 | 1335467 | 1335276 | ID=MS.gene050610.t1.exon2;Parent=MS.gene050610.t1 |
| chr7.3 | CDS | 1335276 | 1335467 | 1335276 | ID=cds.MS.gene050610.t1;Parent=MS.gene050610.t1 |
| chr7.3 | exon | 1335556 | 1335838 | 1335556 | ID=MS.gene050610.t1.exon3;Parent=MS.gene050610.t1 |
| chr7.3 | CDS | 1335556 | 1335838 | 1335556 | ID=cds.MS.gene050610.t1;Parent=MS.gene050610.t1 |
| chr7.3 | exon | 1335913 | 1335934 | 1335913 | ID=MS.gene050610.t1.exon4;Parent=MS.gene050610.t1 |
| chr7.3 | CDS | 1335913 | 1335934 | 1335913 | ID=cds.MS.gene050610.t1;Parent=MS.gene050610.t1 |
| Gene Sequence |
| Protein sequence |
