AlfalfaGEDB | MS.gene050627

M. sativa cultivar XinJiangDaYe / MS.gene050627

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0140110 GO:1901363
PFAM: PF00072.27 PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050627.t1	RHN49520.1	84.3	293	44	2	1	292	1	292	1.20E-130	476.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050627.t1	B8AEH1	54.0	278	116	5	3	269	18	294	2.6e-70	266.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050627.t1	A0A396H8C6	84.3	293	44	2	1	292	1	292	8.5e-131	476.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene050627.t1	TF	GARP-ARR-B

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050627.t1	MTR_7g117705	67.412	313	77	4	1	291	1	310	3.00e-134	388
MS.gene050627.t1	MTR_1g013170	76.448	259	61	0	1	259	1	259	1.19e-126	370
MS.gene050627.t1	MTR_1g013180	63.077	325	86	3	1	291	152	476	5.74e-120	359
MS.gene050627.t1	MTR_3g106220	55.063	316	112	4	2	288	5	319	3.11e-100	307
MS.gene050627.t1	MTR_2g450070	51.429	280	123	5	3	272	16	292	2.16e-81	258
MS.gene050627.t1	MTR_2g450070	51.429	280	123	5	3	272	16	292	3.46e-81	258
MS.gene050627.t1	MTR_1g032570	48.315	267	121	3	4	260	10	269	8.74e-76	243
MS.gene050627.t1	MTR_4g121020	48.507	268	132	2	2	267	28	291	7.20e-75	242
MS.gene050627.t1	MTR_2g034960	47.203	286	145	3	1	286	25	304	7.48e-75	240
MS.gene050627.t1	MTR_4g121020	48.507	268	132	2	2	267	28	291	9.90e-75	241

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050627.t1	AT4G31920	58.301	259	92	2	3	261	11	253	1.13e-90	280
MS.gene050627.t1	AT2G25180	57.088	261	106	3	3	262	11	266	9.66e-88	273
MS.gene050627.t1	AT3G16857	46.102	295	116	6	5	267	33	316	1.13e-73	238
MS.gene050627.t1	AT3G16857	46.102	295	116	6	5	267	33	316	2.00e-73	238
MS.gene050627.t1	AT5G58080	48.754	281	116	5	3	272	12	275	1.35e-70	229
MS.gene050627.t1	AT2G01760	48.031	254	125	3	1	247	3	256	1.19e-69	221
MS.gene050627.t1	AT1G67710	49.603	252	118	4	7	253	9	256	6.69e-68	220
MS.gene050627.t1	AT2G01760	42.662	293	132	5	1	258	3	294	1.86e-63	205
MS.gene050627.t1	AT3G16857	45.136	257	98	6	43	267	1	246	7.69e-59	198
MS.gene050627.t1	AT5G49240	37.815	238	143	4	5	240	38	272	3.39e-45	155

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

Find 46 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCGAGCTAATATGG+TGG	0.705104	7.3:+1160666	MS.gene050627:CDS
AAACTTGTGGTGTAAGTCAT+TGG	0.441523	7.3:-1160000	None:intergenic
AAATCTTACAAAGGAACATG+TGG	0.625593	7.3:+1160345	MS.gene050627:CDS
AACCCATGTATATTGACACT+AGG	0.674841	7.3:-1160733	None:intergenic
AAGTTGAAAAGTAGTAGTTA+TGG	0.482179	7.3:+1160640	MS.gene050627:CDS
ACACCACAAGTTTCTTGTCG+CGG	0.645407	7.3:+1160010	MS.gene050627:CDS
ACATGTGGCCAGCCATCTCC+AGG	0.523004	7.3:+1160360	MS.gene050627:CDS
AGCTTAAATCCATCCATGTC+TGG	0.471845	7.3:-1159517	None:intergenic
AGTTGAAAAGTAGTAGTTAT+GGG	0.440897	7.3:+1160641	MS.gene050627:CDS
ATAACTTACTTATGACAGGT+AGG	0.629417	7.3:-1159567	None:intergenic

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCCATCTAGAAAAAGAA+AGG	+	chr7.3:1159887-1159906	MS.gene050627:CDS	30.0%
AAATCTTACAAAGGAACATG+TGG	+	chr7.3:1160345-1160364	MS.gene050627:CDS	30.0%
ATAACTTACTTATGACAGGT+AGG	-	chr7.3:1159570-1159589	None:intergenic	30.0%
ATCGAATGAATCCAACAATT+TGG	-	chr7.3:1159337-1159356	None:intergenic	30.0%
ATGAATGATGAGTTTCGAAT+TGG	+	chr7.3:1158810-1158829	MS.gene050627:CDS	30.0%
GAGTATGATCATGAAAATGA+TGG	+	chr7.3:1159942-1159961	MS.gene050627:CDS	30.0%
GATCAAATTCTCTCAAAGAT+TGG	+	chr7.3:1159218-1159237	MS.gene050627:intron	30.0%
GTTATGAAAGCAATTGATCT+CGG	+	chr7.3:1159696-1159715	MS.gene050627:CDS	30.0%
TAAAGAAAAATACCTGGAGA+TGG	-	chr7.3:1160375-1160394	None:intergenic	30.0%
TAAATCGTAATCATAAGGGA+CGG	+	chr7.3:1158985-1159004	MS.gene050627:intron	30.0%

Showing 1 to 10 of 88 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	1158810	1160786	1158810	ID=MS.gene050627
chr7.3	mRNA	1158810	1160786	1158810	ID=MS.gene050627.t1;Parent=MS.gene050627
chr7.3	exon	1158810	1158912	1158810	ID=MS.gene050627.t1.exon1;Parent=MS.gene050627.t1
chr7.3	CDS	1158810	1158912	1158810	ID=cds.MS.gene050627.t1;Parent=MS.gene050627.t1
chr7.3	exon	1159428	1159580	1159428	ID=MS.gene050627.t1.exon2;Parent=MS.gene050627.t1
chr7.3	CDS	1159428	1159580	1159428	ID=cds.MS.gene050627.t1;Parent=MS.gene050627.t1
chr7.3	exon	1159667	1160053	1159667	ID=MS.gene050627.t1.exon3;Parent=MS.gene050627.t1
chr7.3	CDS	1159667	1160053	1159667	ID=cds.MS.gene050627.t1;Parent=MS.gene050627.t1
chr7.3	exon	1160305	1160381	1160305	ID=MS.gene050627.t1.exon4;Parent=MS.gene050627.t1
chr7.3	CDS	1160305	1160381	1160305	ID=cds.MS.gene050627.t1;Parent=MS.gene050627.t1
chr7.3	exon	1160628	1160786	1160628	ID=MS.gene050627.t1.exon5;Parent=MS.gene050627.t1
chr7.3	CDS	1160628	1160786	1160628	ID=cds.MS.gene050627.t1;Parent=MS.gene050627.t1

Gene Sequence

>MS.gene050627

ATGAATGATGAGTTTCGAATTGGAATGAATATTCTTGCTGTTGATGATGACAGAACTTGTCTCAAGATTTTGGAGAGACTTCTCGAAAGGTGTCAATACCATGGTATGCTTCTTTTTCTTTTTTAAATATTAAAAAATTGTTTTTGACTATGAAGCAGTGACACGACATCATTATTAAATCGTAATCATAAGGGACGGTGTGTCGGATAACCTTAGATTAGAAGTGTCGCTGCTACAAAAGTTTTAGATTTGATTCTTTAGATCCTTTTGGCTAAGGCATTGTAATTAGAACGATAATGTTAACGGTTTCTTTTTCTTCTATTTTTTCTACCTGTACGAATCAATTATATTAGTTTAGTCTTACATTTTCTTCGATACTGTTTAGGTTCTACTAAATTATATTTGACCGATCAAATTCTCTCAAAGATTGGACGTTTTTAAAGTTCACAGTTTTAAAAAAAAATCTTGTGTCTAATCTTTTGTGAACTTATGTTATTTTTTGGATTTCAAATATTTAACTGCATCCAAATTGTTGGATTCATTCGATGCAGGACATAATGTATCAATTATTTTTCCTTTCATAATGATATTAATTTTAGTTATAATTATTTGTTGCAGTAACCACTGCTCCAAGTGCACGAATAGCACTGAATTTGTTAAGAGAAAACAAAAACAATTTTGACCTAGTAATGAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAAATGGACCTACCTGTCATAAGTAAGTTATGCAATTCTCCAATCTTTTGTTACTGATACATTTATAACAAATTATCAAGTGTTTTAATTACAAAGTTTTGTTTTCAGTGTTTTCTGAAAATGATGATCCTAAGCTGGTTATGAAAGCAATTGATCTCGGTGCTTGTGATTATCTGCTGAAACCTGTTCAATTGAAAGAGGTGAAGATGATTTGGCAACATGTAATCAGAAAGAAGAAAATTAGCAAAAGAAGCAATCACGATGTGCCTAATTCTGATAGTGGAAATGGAATATATTCAACTGTGACAAAAAATTCTGATAAAATTGAAAAGCCATCTAGAAAAAGAAAGGATAAGAATGAAGATGATGTTGAGGAAGAGAATGAGTATGATCATGAAAATGATGGTCCAACTGCGCCGAAGAAGCCTCGATTTCGTTGGTCCAATGACTTACACCACAAGTTTCTTGTCGCGGTTAACAAATTTGGCGTTGAAAGTATGTTCTTCCCTCTGCTTTCAATGTGCAAAAACAACTATCCTCAAATCTTTTATCTATTGCTATATTCGTCTTTATTTTTATCAAAGATGTTTGAGTAGGTTATAGCAATCCCAATGTTGATATTAATATTATGATATGAAAACGAAAATTATACTTTGTTTTATTTGAAGATTTCCTCAAATACTCTTGCTATGACGTTTTTCAACATTGAACTGTGTTTCTCATTATAGTTGTTATTTTGTTTGCAGAGGCTAGGCCACAAAAGATTCTTAACTTGATGAATGTTGAAAATCTTACAAAGGAACATGTGGCCAGCCATCTCCAGGTATTTTTCTTTATCTCTTATGCTTTAGCTTTTTAAGCTATGAAGACAATCATGACAAAGACACGGATGCAAGACATGACACTGACATAATGACACTGCTATAAATTTATAAATTTTTAGTAATTAAATTAAATGTTAAATTAATTTCATGTATAGTGTCAAACACTAGACACACCTACCTAGTTTACATTTTACAAACACTTTAATTTAGGGAAATTTACTTGGTTTTTGTTTTTAAATCTGCAGAAATATAGACTAAAGTTGAAAAGTAGTAGTTATGGGAAAAACCATCGAGCTAATATGGTGGCTAGTGGTTCTGATACATCATCTCACTCAAGAATTGACACTCCTCCTAGTGTCAATATACATGGGTTGGCTACTCTTGATTTAAACAACTCCTTGTAA

Protein sequence

>MS.gene050627.t1

MNDEFRIGMNILAVDDDRTCLKILERLLERCQYHVTTAPSARIALNLLRENKNNFDLVMSNVHMPDMDGFKLLELVGLEMDLPVIMFSENDDPKLVMKAIDLGACDYLLKPVQLKEVKMIWQHVIRKKKISKRSNHDVPNSDSGNGIYSTVTKNSDKIEKPSRKRKDKNEDDVEEENEYDHENDGPTAPKKPRFRWSNDLHHKFLVAVNKFGVEKARPQKILNLMNVENLTKEHVASHLQKYRLKLKSSSYGKNHRANMVASGSDTSSHSRIDTPPSVNIHGLATLDLNNSL