AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051195

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051195.t1 MTR_2g040990 99.605 253 1 0 1 253 1 253 0.0 521
MS.gene051195.t1 MTR_8g019520 74.016 254 56 5 8 253 5 256 7.38e-117 335
MS.gene051195.t1 MTR_8g019520 72.157 255 60 4 8 253 5 257 2.51e-115 331
MS.gene051195.t1 MTR_1g015185 73.282 262 52 3 7 253 5 263 4.80e-114 328
MS.gene051195.t1 MTR_2g099500 72.177 248 58 5 13 252 6 250 1.38e-106 308
MS.gene051195.t1 MTR_4g134510 68.548 248 68 6 12 252 10 254 1.97e-105 306
MS.gene051195.t1 MTR_4g015830 59.615 260 78 7 1 253 1 240 5.19e-90 266
MS.gene051195.t1 MTR_7g068590 57.647 255 93 6 1 253 1 242 3.22e-84 251
MS.gene051195.t1 MTR_1g015185 86.897 145 19 0 7 151 5 149 3.93e-79 237
MS.gene051195.t1 MTR_8g066480 81.818 132 9 2 123 253 29 146 2.42e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051195.t1 AT5G20510 68.702 262 69 3 3 253 1 260 5.13e-119 340
MS.gene051195.t1 AT3G42790 68.775 253 72 4 3 252 1 249 2.86e-110 318
MS.gene051195.t1 AT2G02470 69.444 252 63 6 12 253 9 256 5.17e-107 310
MS.gene051195.t1 AT2G02470 69.758 248 60 6 12 253 9 247 5.88e-105 304
MS.gene051195.t1 AT1G14510 70.082 244 64 5 12 250 9 248 1.26e-101 296
MS.gene051195.t1 AT5G26210 71.542 253 63 2 7 252 4 254 3.11e-100 293
MS.gene051195.t1 AT5G20510 67.890 218 57 3 47 253 4 219 5.44e-92 270
MS.gene051195.t1 AT5G05610 62.140 243 82 6 11 252 7 240 2.25e-88 262
MS.gene051195.t1 AT5G05610 62.140 243 82 6 11 252 7 240 2.25e-88 262
MS.gene051195.t1 AT3G11200 61.508 252 88 5 3 252 1 245 4.25e-86 256
MS.gene051195.t1 AT5G20510 75.758 165 40 0 3 167 1 165 5.55e-84 249
MS.gene051195.t1 AT3G11200 61.111 216 75 5 39 252 24 232 6.55e-71 217
MS.gene051195.t1 AT2G02470 75.796 157 36 2 12 168 9 163 1.33e-69 215

Find 63 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATATCCCGGTGAATTA+TGG 0.229806 2.3:+48889643 MS.gene051195:CDS
CCGGACTCTCTTATTGTTGC+AGG 0.298666 2.3:-48891461 None:intergenic
TTCTACTTCGGCGCAAGATT+TGG 0.307978 2.3:+48889810 MS.gene051195:CDS
TTGATGCCCAATGCAGGTTC+TGG 0.338942 2.3:-48889705 None:intergenic
TATCTGCATCAGATGAGTTC+TGG 0.365648 2.3:+48891344 MS.gene051195:CDS
TGGATATCCCGGTGAATTAT+GGG 0.422923 2.3:+48889644 MS.gene051195:CDS
AAGGAGAATCTTTCTCTGTA+TGG 0.424220 2.3:+48889624 MS.gene051195:CDS
GACTTCAAGGGCCGTAGAGC+TGG 0.434123 2.3:+48888045 MS.gene051195:CDS
AGCTGTCTTCCGTGACTTCA+AGG 0.434860 2.3:+48888032 MS.gene051195:CDS
TGATCTGCCAACAATATTTG+AGG 0.435492 2.3:+48890866 MS.gene051195:CDS
CTCTCTGTGGCTTTCTACTT+CGG 0.439785 2.3:+48889798 MS.gene051195:CDS
AAAAGGGTCATGGAACTTGC+TGG 0.449501 2.3:+48887976 None:intergenic
CATGCAGCGTGGATCTGAAC+TGG 0.451670 2.3:+48891225 MS.gene051195:intron
AATGCAGGTTCTGGAAGTTC+AGG 0.475540 2.3:-48889696 None:intergenic
TTGATTAAAGCTCTCACCAC+TGG 0.479655 2.3:+48888069 MS.gene051195:CDS
CTGTTGTGACTTGAGACAGA+TGG 0.481520 2.3:-48890927 None:intergenic
TTGATGTGCTCAGCCCGGGC+AGG 0.484353 2.3:-48891421 None:intergenic
TGAACTTCCAGAACCTGCAT+TGG 0.488308 2.3:+48889698 MS.gene051195:CDS
CTGCTTGATGTGCTCAGCCC+GGG 0.490873 2.3:-48891425 None:intergenic
ACAATATTTGAGGTTGTGAC+CGG 0.491460 2.3:+48890876 MS.gene051195:CDS
TTGCTGTTCACAGTGATACA+TGG 0.492333 2.3:+48889772 MS.gene051195:CDS
ACTGCTTGATGTGCTCAGCC+CGG 0.493704 2.3:-48891426 None:intergenic
GAACTTCCAGAACCTGCATT+GGG 0.499838 2.3:+48889699 MS.gene051195:CDS
TCAGGAGGAACTTCTTCAGC+AGG 0.502111 2.3:-48889678 None:intergenic
GTGTGAAGATCACTCCTGCC+CGG 0.508233 2.3:+48891407 MS.gene051195:CDS
ATCTGCTAAGAAGCAGACTA+AGG 0.509595 2.3:+48890899 MS.gene051195:CDS
AGTCTGCTTCTTAGCAGATC+CGG 0.514682 2.3:-48890895 None:intergenic
TTCCCTATGGTATTCAAGGC+CGG 0.515731 2.3:-48891480 None:intergenic
AACAGCAACAAGTCAAAGTC+AGG 0.516207 2.3:+48890945 MS.gene051195:CDS
GCAAAATTGATGCCCAATGC+AGG 0.517201 2.3:-48889711 None:intergenic
ATATGCGAGAAGTGGTATCA+TGG 0.517493 2.3:+48891379 MS.gene051195:CDS
CTTTCTCTGTATGGATATCC+CGG 0.520026 2.3:+48889633 MS.gene051195:CDS
CCTAACCAGGGTCACACTGC+TGG 0.524327 2.3:-48888216 None:intergenic
GACGACGAAGAGGAGGATCA+AGG 0.529279 2.3:+48891292 MS.gene051195:CDS
CTCTACGGCCCTTGAAGTCA+CGG 0.531441 2.3:-48888041 None:intergenic
ATGGGATGCAAGAAAAGGAT+TGG 0.537031 2.3:+48889739 MS.gene051195:CDS
GTCATGGAACTTGCTGGTGA+TGG 0.537299 2.3:+48887982 None:intergenic
GATCATTAATCAGAGTGAAA+AGG 0.538004 2.3:-48890848 None:intergenic
GTCACAACCTCAAATATTGT+TGG 0.541746 2.3:-48890873 None:intergenic
ACGACGAAGAGGAGGATCAA+GGG 0.543159 2.3:+48891293 MS.gene051195:CDS
TCAACAGTACGAGGGTCAAA+CGG 0.546490 2.3:-48888009 None:intergenic
AAAAGAAGATGACGAGGGAG+TGG 0.555346 2.3:+48891270 MS.gene051195:CDS
TAGGGATGGGATGCAAGAAA+AGG 0.555698 2.3:+48889734 MS.gene051195:CDS
AGTGACTTCCCATAATTCAC+CGG 0.557164 2.3:-48889652 None:intergenic
TGTGAAGATCACTCCTGCCC+GGG 0.562262 2.3:+48891408 MS.gene051195:CDS
CCTGCAACAATAAGAGAGTC+CGG 0.564359 2.3:+48891461 MS.gene051195:CDS
GCTGTCTTCCGTGACTTCAA+GGG 0.569487 2.3:+48888033 MS.gene051195:CDS
ACTCTCTTATTGTTGCAGGC+AGG 0.572502 2.3:-48891457 None:intergenic
CTTTAATCAAGCCAGCTCTA+CGG 0.578337 2.3:-48888056 None:intergenic
TTGGCTTTGATAAAGCCGAC+AGG 0.579784 2.3:+48889829 MS.gene051195:CDS
GCCAGCAAAAGAAGATGACG+AGG 0.593624 2.3:+48891264 MS.gene051195:CDS
CAAGGGGAATGCGCTGCATG+CGG 0.601102 2.3:+48891310 MS.gene051195:CDS
TGATACATGGCTTCTCTCTG+TGG 0.605581 2.3:+48889785 MS.gene051195:CDS
CGACGAAGAGGAGGATCAAG+GGG 0.610579 2.3:+48891294 MS.gene051195:CDS
GCAGGTTCTGGAAGTTCAGG+AGG 0.623597 2.3:-48889693 None:intergenic
CGAGGGAGTGGACGACGAAG+AGG 0.626370 2.3:+48891282 MS.gene051195:CDS
GGGAGTGGACGACGAAGAGG+AGG 0.630295 2.3:+48891285 MS.gene051195:CDS
GTGACTTCCCATAATTCACC+GGG 0.639519 2.3:-48889651 None:intergenic
GTCAAAGTCAGGCTCAAAAG+CGG 0.660535 2.3:+48890956 MS.gene051195:CDS
AAGACAGCTTCAACAGTACG+AGG 0.662619 2.3:-48888018 None:intergenic
GCTGTGACATATGCGAGAAG+TGG 0.668882 2.3:+48891371 MS.gene051195:CDS
AGACAGCTTCAACAGTACGA+GGG 0.736429 2.3:-48888017 None:intergenic
CCAGCAAAAGAAGATGACGA+GGG 0.742179 2.3:+48891265 MS.gene051195:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATGAAAATATACA+AGG - chr2.3:48891008-48891027 None:intergenic 10.0%
!!! TTTAATTTTAAAAAATGAAC+TGG + chr2.3:48888663-48888682 MS.gene051195:intron 10.0%
!!! ATTGTATATGTTTTCAAAAA+TGG + chr2.3:48889036-48889055 MS.gene051195:intron 15.0%
!!! GTTAATTCAATTTTTTTTTC+TGG - chr2.3:48889394-48889413 None:intergenic 15.0%
!!! TTTATGAAATAATAGGATTT+TGG - chr2.3:48889091-48889110 None:intergenic 15.0%
!! AACATTCCATAACATAATAA+AGG - chr2.3:48889878-48889897 None:intergenic 20.0%
!! ACAAGAAATATAACGATTAA+CGG - chr2.3:48889914-48889933 None:intergenic 20.0%
!! AGTATATGTTTGTATATATG+TGG - chr2.3:48890018-48890037 None:intergenic 20.0%
!! TAGAATATAGCAAAAATTGT+AGG - chr2.3:48888856-48888875 None:intergenic 20.0%
!! TTATTATGTTATGGAATGTT+TGG + chr2.3:48889878-48889897 MS.gene051195:intron 20.0%
!!! ATTTTAAAAAATGAACTGGT+TGG + chr2.3:48888667-48888686 MS.gene051195:intron 20.0%
!!! TCAATTTTTTTTTCTGGATT+CGG - chr2.3:48889388-48889407 None:intergenic 20.0%
! AAAAGAATTATCATACCTGT+CGG - chr2.3:48889847-48889866 None:intergenic 25.0%
! AATTGTCAAAAGAAATAGTG+TGG + chr2.3:48890202-48890221 MS.gene051195:intron 25.0%
! ATAACATAATAAAGGATTGG+AGG - chr2.3:48889870-48889889 None:intergenic 25.0%
! ATCCAAAATCAAATACACAT+AGG - chr2.3:48889115-48889134 None:intergenic 25.0%
! CAAAACTAAATGCAAACTAT+AGG - chr2.3:48890358-48890377 None:intergenic 25.0%
! CATAGGGTTTATGAAATAAT+AGG - chr2.3:48889098-48889117 None:intergenic 25.0%
! CTTATATACTGTATTGTTTG+TGG + chr2.3:48888331-48888350 MS.gene051195:intron 25.0%
! TACATTGTAATTCTTCATGT+AGG + chr2.3:48890820-48890839 MS.gene051195:intron 25.0%
! TCATAGAATCATACATATCA+TGG - chr2.3:48889193-48889212 None:intergenic 25.0%
! TCCAAAATCAAATACACATA+GGG - chr2.3:48889114-48889133 None:intergenic 25.0%
! TCCAATCCTTTATTATGTTA+TGG + chr2.3:48889869-48889888 MS.gene051195:intron 25.0%
! TCCATAACATAATAAAGGAT+TGG - chr2.3:48889873-48889892 None:intergenic 25.0%
! TGGATTGACATTGTTTAAAA+AGG + chr2.3:48889130-48889149 MS.gene051195:intron 25.0%
! TGTCTTATAATAATGCTGAA+TGG + chr2.3:48891150-48891169 MS.gene051195:intron 25.0%
! TGTGTTATGCAATATCAAAA+TGG + chr2.3:48890376-48890395 MS.gene051195:intron 25.0%
! TTTCTCTCTTTATGCAAAAT+AGG + chr2.3:48890538-48890557 MS.gene051195:intron 25.0%
!! ATGGATATTTCTACTAGATT+TGG - chr2.3:48889295-48889314 None:intergenic 25.0%
!! TATTTTGCTTGAATAGATGT+AGG + chr2.3:48891124-48891143 MS.gene051195:intron 25.0%
!! TGGATATTTCTACTAGATTT+GGG - chr2.3:48889294-48889313 None:intergenic 25.0%
!! TTCTTTTGACAATTTAAGCA+AGG - chr2.3:48890196-48890215 None:intergenic 25.0%
!!! AATTTTTTTTTCTGGATTCG+GGG - chr2.3:48889386-48889405 None:intergenic 25.0%
!!! AGTCATGTAATTTTTAACTG+TGG - chr2.3:48888627-48888646 None:intergenic 25.0%
!!! CAATTTTTTTTTCTGGATTC+GGG - chr2.3:48889387-48889406 None:intergenic 25.0%
!!! TAAGATTGTTTTGTGTTTGT+CGG + chr2.3:48888255-48888274 MS.gene051195:intron 25.0%
AAATATACAAGGAAGAGAGA+AGG - chr2.3:48890997-48891016 None:intergenic 30.0%
AACATGTTCTACATCAGAAA+AGG + chr2.3:48889605-48889624 MS.gene051195:intron 30.0%
AATATCCATGTAGATTTCGT+AGG + chr2.3:48889306-48889325 MS.gene051195:intron 30.0%
ACTGTATTGTTTGTGGATTT+GGG + chr2.3:48888338-48888357 MS.gene051195:intron 30.0%
ACTTATATAGATCAACAACG+AGG - chr2.3:48888769-48888788 None:intergenic 30.0%
ATGAACGTTGTGATTTGAAT+TGG + chr2.3:48888490-48888509 MS.gene051195:intron 30.0%
ATTACAATGTATCACAGATC+AGG - chr2.3:48890811-48890830 None:intergenic 30.0%
ATTGTTCTGATGAACTTATC+TGG + chr2.3:48888893-48888912 MS.gene051195:intron 30.0%
CATATGTTTGATATAACACC+AGG - chr2.3:48889465-48889484 None:intergenic 30.0%
CTGAACTTATGTTTCTTATG+CGG + chr2.3:48890114-48890133 MS.gene051195:intron 30.0%
GATCATTAATCAGAGTGAAA+AGG - chr2.3:48890851-48890870 None:intergenic 30.0%
TACTGTATTGTTTGTGGATT+TGG + chr2.3:48888337-48888356 MS.gene051195:intron 30.0%
TGAACGTTGTGATTTGAATT+GGG + chr2.3:48888491-48888510 MS.gene051195:intron 30.0%
TTGATATAACACCAGGTAAA+AGG - chr2.3:48889458-48889477 None:intergenic 30.0%
TTGTTCTGATGAACTTATCT+GGG + chr2.3:48888894-48888913 MS.gene051195:intron 30.0%
! AAAACACGGCAAAAATGTTT+TGG - chr2.3:48889940-48889959 None:intergenic 30.0%
! AAACACGGCAAAAATGTTTT+GGG - chr2.3:48889939-48889958 None:intergenic 30.0%
! AAACTAGAAAACCTTTTACC+TGG + chr2.3:48889444-48889463 MS.gene051195:intron 30.0%
! TCTCCTTATTTATGATGCAT+GGG + chr2.3:48890280-48890299 MS.gene051195:intron 30.0%
! TTCTCCTTATTTATGATGCA+TGG + chr2.3:48890279-48890298 MS.gene051195:intron 30.0%
!! ACCCTATGTGTATTTGATTT+TGG + chr2.3:48889110-48889129 MS.gene051195:intron 30.0%
!! GTTTTGACAATGTTGTCATT+TGG + chr2.3:48888729-48888748 MS.gene051195:intron 30.0%
AAGAGTAAAAACCCTAACCA+GGG - chr2.3:48888231-48888250 None:intergenic 35.0%
AAGGAGAATCTTTCTCTGTA+TGG + chr2.3:48889624-48889643 MS.gene051195:CDS 35.0%
ACAATCCTACGAAATCTACA+TGG - chr2.3:48889314-48889333 None:intergenic 35.0%
AGCACTTGAGAATAGATGAA+GGG - chr2.3:48889416-48889435 None:intergenic 35.0%
AGGGTTTCACAATTCACATA+GGG - chr2.3:48889003-48889022 None:intergenic 35.0%
ATAGAACCAGTGAGTTCAAT+CGG + chr2.3:48888596-48888615 MS.gene051195:intron 35.0%
ATCATTACACACACAGCAAA+AGG - chr2.3:48888541-48888560 None:intergenic 35.0%
ATGCTTAGCATTGTTTGCAT+GGG + chr2.3:48890643-48890662 MS.gene051195:intron 35.0%
CTTCCCATGCATCATAAATA+AGG - chr2.3:48890286-48890305 None:intergenic 35.0%
GTCACAACCTCAAATATTGT+TGG - chr2.3:48890876-48890895 None:intergenic 35.0%
GTGAGCAACACATATTTGTA+AGG - chr2.3:48891194-48891213 None:intergenic 35.0%
GTTCTGATTGAGATCATATG+TGG + chr2.3:48890068-48890087 MS.gene051195:intron 35.0%
TAGCACTTGAGAATAGATGA+AGG - chr2.3:48889417-48889436 None:intergenic 35.0%
TAGGGTTTCACAATTCACAT+AGG - chr2.3:48889004-48889023 None:intergenic 35.0%
TCAAAAGAAATAGTGTGGAG+AGG + chr2.3:48890207-48890226 MS.gene051195:intron 35.0%
TCATTACACACACAGCAAAA+GGG - chr2.3:48888540-48888559 None:intergenic 35.0%
TGACAATTTAAGCAAGGAAG+TGG - chr2.3:48890190-48890209 None:intergenic 35.0%
TGATCTGCCAACAATATTTG+AGG + chr2.3:48890866-48890885 MS.gene051195:CDS 35.0%
TGTAGCTTCAGGAAAAAACA+CGG - chr2.3:48889954-48889973 None:intergenic 35.0%
! ACAATATTTGAGGTTGTGAC+CGG + chr2.3:48890876-48890895 MS.gene051195:CDS 35.0%
! ATGATGCATGGGAAGATTTT+CGG + chr2.3:48890291-48890310 MS.gene051195:intron 35.0%
! ATTGGGCATCAATTTTGCTA+GGG + chr2.3:48889716-48889735 MS.gene051195:CDS 35.0%
! CTTATGCGGCAATATTGATT+TGG + chr2.3:48890128-48890147 MS.gene051195:intron 35.0%
! GACACTTAGCATTGTTTTCA+TGG + chr2.3:48890567-48890586 MS.gene051195:intron 35.0%
!! TAAGTGCTGAACACATGTTT+AGG - chr2.3:48889991-48890010 None:intergenic 35.0%
!! TGTTACTGGATTTGGTGTAT+CGG - chr2.3:48889357-48889376 None:intergenic 35.0%
AACAGCAACAAGTCAAAGTC+AGG + chr2.3:48890945-48890964 MS.gene051195:CDS 40.0%
AGTGACTTCCCATAATTCAC+CGG - chr2.3:48889655-48889674 None:intergenic 40.0%
ATAATGCTGAATGGAGTCGT+CGG + chr2.3:48891159-48891178 MS.gene051195:intron 40.0%
ATACAATCCGAGCTGTTCTT+AGG - chr2.3:48889023-48889042 None:intergenic 40.0%
ATATGCGAGAAGTGGTATCA+TGG + chr2.3:48891379-48891398 MS.gene051195:CDS 40.0%
ATCAAACATAGAGATGCGCA+TGG - chr2.3:48890625-48890644 None:intergenic 40.0%
ATCTGCTAAGAAGCAGACTA+AGG + chr2.3:48890899-48890918 MS.gene051195:CDS 40.0%
ATGCTACAACTTGTAGCTTC+AGG - chr2.3:48889965-48889984 None:intergenic 40.0%
ATGGATATCCCGGTGAATTA+TGG + chr2.3:48889643-48889662 MS.gene051195:CDS 40.0%
ATGGGATGCAAGAAAAGGAT+TGG + chr2.3:48889739-48889758 MS.gene051195:CDS 40.0%
ATTTGTGTGTGCAAGTGCAT+TGG + chr2.3:48890693-48890712 MS.gene051195:intron 40.0%
CAAGAGTAAAAACCCTAACC+AGG - chr2.3:48888232-48888251 None:intergenic 40.0%
CAATGTTGTTAGATCCAGAC+CGG + chr2.3:48888571-48888590 MS.gene051195:intron 40.0%
CTTTAATCAAGCCAGCTCTA+CGG - chr2.3:48888059-48888078 None:intergenic 40.0%
CTTTCTCTGTATGGATATCC+CGG + chr2.3:48889633-48889652 MS.gene051195:CDS 40.0%
GATGCTTAGCATTGTTTGCA+TGG + chr2.3:48890642-48890661 MS.gene051195:intron 40.0%
GTTAAACCGATTGAACTCAC+TGG - chr2.3:48888605-48888624 None:intergenic 40.0%
TACAATCCGAGCTGTTCTTA+GGG - chr2.3:48889022-48889041 None:intergenic 40.0%
TATAACGATTAACGGAGACG+CGG - chr2.3:48889906-48889925 None:intergenic 40.0%
TATCTGCATCAGATGAGTTC+TGG + chr2.3:48891344-48891363 MS.gene051195:CDS 40.0%
TGCAAACTATAGGCAGTAGA+TGG - chr2.3:48890348-48890367 None:intergenic 40.0%
TGGATATCCCGGTGAATTAT+GGG + chr2.3:48889644-48889663 MS.gene051195:CDS 40.0%
TTGATTAAAGCTCTCACCAC+TGG + chr2.3:48888069-48888088 MS.gene051195:CDS 40.0%
TTGTCAAAACCAGATCGAAC+TGG - chr2.3:48888719-48888738 None:intergenic 40.0%
! CATTGGGCATCAATTTTGCT+AGG + chr2.3:48889715-48889734 MS.gene051195:CDS 40.0%
! GCATCAATTTTGCTAGGGAT+GGG + chr2.3:48889721-48889740 MS.gene051195:CDS 40.0%
! GCTGCATATGTGTCTGTTTT+GGG + chr2.3:48888935-48888954 MS.gene051195:intron 40.0%
! TAGATTTGGGATCATTGCAG+TGG - chr2.3:48889281-48889300 None:intergenic 40.0%
! TGCTGCATATGTGTCTGTTT+TGG + chr2.3:48888934-48888953 MS.gene051195:intron 40.0%
! TTGCTGTTCACAGTGATACA+TGG + chr2.3:48889772-48889791 MS.gene051195:CDS 40.0%
!! ATGAACTGGTTGGTTTGATC+TGG + chr2.3:48888677-48888696 MS.gene051195:intron 40.0%
!!! TTTTTTCTGGATTCGGGGTT+GGG - chr2.3:48889381-48889400 None:intergenic 40.0%
!!! TTTTTTTCTGGATTCGGGGT+TGG - chr2.3:48889382-48889401 None:intergenic 40.0%
AAAAGAAGATGACGAGGGAG+TGG + chr2.3:48891270-48891289 MS.gene051195:CDS 45.0%
AAGACAGCTTCAACAGTACG+AGG - chr2.3:48888021-48888040 None:intergenic 45.0%
ACTCTCTTATTGTTGCAGGC+AGG - chr2.3:48891460-48891479 None:intergenic 45.0%
AGACAGCTTCAACAGTACGA+GGG - chr2.3:48888020-48888039 None:intergenic 45.0%
AGTCTGCTTCTTAGCAGATC+CGG - chr2.3:48890898-48890917 None:intergenic 45.0%
CACATCACTCATGCTCATCA+GGG + chr2.3:48890471-48890490 MS.gene051195:intron 45.0%
CCAGCAAAAGAAGATGACGA+GGG + chr2.3:48891265-48891284 MS.gene051195:CDS 45.0%
CCTGCAACAATAAGAGAGTC+CGG + chr2.3:48891461-48891480 MS.gene051195:CDS 45.0%
CTCTCTGTGGCTTTCTACTT+CGG + chr2.3:48889798-48889817 MS.gene051195:CDS 45.0%
CTGTTGTGACTTGAGACAGA+TGG - chr2.3:48890930-48890949 None:intergenic 45.0%
GAACTTCCAGAACCTGCATT+GGG + chr2.3:48889699-48889718 MS.gene051195:CDS 45.0%
GCAAAATTGATGCCCAATGC+AGG - chr2.3:48889714-48889733 None:intergenic 45.0%
GTCAAAGTCAGGCTCAAAAG+CGG + chr2.3:48890956-48890975 MS.gene051195:CDS 45.0%
GTGAAACCCTAAGAACAGCT+CGG + chr2.3:48889013-48889032 MS.gene051195:intron 45.0%
GTGACTTCCCATAATTCACC+GGG - chr2.3:48889654-48889673 None:intergenic 45.0%
TAGGGATGGGATGCAAGAAA+AGG + chr2.3:48889734-48889753 MS.gene051195:CDS 45.0%
TCAACAGTACGAGGGTCAAA+CGG - chr2.3:48888012-48888031 None:intergenic 45.0%
TCACATCACTCATGCTCATC+AGG + chr2.3:48890470-48890489 MS.gene051195:intron 45.0%
TGAACTTCCAGAACCTGCAT+TGG + chr2.3:48889698-48889717 MS.gene051195:CDS 45.0%
TGATACATGGCTTCTCTCTG+TGG + chr2.3:48889785-48889804 MS.gene051195:CDS 45.0%
TTCTACTTCGGCGCAAGATT+TGG + chr2.3:48889810-48889829 MS.gene051195:CDS 45.0%
! GGCATCAATTTTGCTAGGGA+TGG + chr2.3:48889720-48889739 MS.gene051195:CDS 45.0%
! GGTTGGGTTGTTACTGGATT+TGG - chr2.3:48889365-48889384 None:intergenic 45.0%
! TCGTCATCTTCTTTTGCTGG+CGG - chr2.3:48891265-48891284 None:intergenic 45.0%
!! AATGCAGGTTCTGGAAGTTC+AGG - chr2.3:48889699-48889718 None:intergenic 45.0%
!! GAACTCACTGGTTCTATCTC+CGG - chr2.3:48888593-48888612 None:intergenic 45.0%
!! TTGGCTTTGATAAAGCCGAC+AGG + chr2.3:48889829-48889848 MS.gene051195:CDS 45.0%
ACGACGAAGAGGAGGATCAA+GGG + chr2.3:48891293-48891312 MS.gene051195:CDS 50.0%
AGCTGTCTTCCGTGACTTCA+AGG + chr2.3:48888032-48888051 MS.gene051195:CDS 50.0%
ATCACTCATGCTCATCAGGG+AGG + chr2.3:48890474-48890493 MS.gene051195:intron 50.0%
CAAAACCAGATCGAACTGGC+TGG - chr2.3:48888715-48888734 None:intergenic 50.0%
CCGGACTCTCTTATTGTTGC+AGG - chr2.3:48891464-48891483 None:intergenic 50.0%
GAGAGAGAGAGAGAAACCAG+TGG - chr2.3:48888088-48888107 None:intergenic 50.0%
GATTGTTTCCTCATGCAGCG+TGG + chr2.3:48891214-48891233 MS.gene051195:intron 50.0%
GCCAGCAAAAGAAGATGACG+AGG + chr2.3:48891264-48891283 MS.gene051195:CDS 50.0%
GCTGTCTTCCGTGACTTCAA+GGG + chr2.3:48888033-48888052 MS.gene051195:CDS 50.0%
GCTGTGACATATGCGAGAAG+TGG + chr2.3:48891371-48891390 MS.gene051195:CDS 50.0%
TCAGGAGGAACTTCTTCAGC+AGG - chr2.3:48889681-48889700 None:intergenic 50.0%
TTGAACCAGCCAGTTCGATC+TGG + chr2.3:48888707-48888726 MS.gene051195:intron 50.0%
TTGATGCCCAATGCAGGTTC+TGG - chr2.3:48889708-48889727 None:intergenic 50.0%
! ATTCGGGGTTGGGTTGTTAC+TGG - chr2.3:48889371-48889390 None:intergenic 50.0%
! CCCTCGTCATCTTCTTTTGC+TGG - chr2.3:48891268-48891287 None:intergenic 50.0%
! TTTTACCAGCAGTGTGACCC+TGG + chr2.3:48888211-48888230 MS.gene051195:CDS 50.0%
ACTGCTTGATGTGCTCAGCC+CGG - chr2.3:48891429-48891448 None:intergenic 55.0%
CAGCAGTGTGACCCTGGTTA+GGG + chr2.3:48888217-48888236 MS.gene051195:intron 55.0%
CATGCAGCGTGGATCTGAAC+TGG + chr2.3:48891225-48891244 MS.gene051195:intron 55.0%
CGACGAAGAGGAGGATCAAG+GGG + chr2.3:48891294-48891313 MS.gene051195:CDS 55.0%
CTCTACGGCCCTTGAAGTCA+CGG - chr2.3:48888044-48888063 None:intergenic 55.0%
GACGACGAAGAGGAGGATCA+AGG + chr2.3:48891292-48891311 MS.gene051195:CDS 55.0%
GTGTGAAGATCACTCCTGCC+CGG + chr2.3:48891407-48891426 MS.gene051195:CDS 55.0%
GTTCAGATCCACGCTGCATG+AGG - chr2.3:48891225-48891244 None:intergenic 55.0%
TGTGAAGATCACTCCTGCCC+GGG + chr2.3:48891408-48891427 MS.gene051195:CDS 55.0%
!! CACTGGTTCTATCTCCGGTC+TGG - chr2.3:48888588-48888607 None:intergenic 55.0%
!! GCAGGTTCTGGAAGTTCAGG+AGG - chr2.3:48889696-48889715 None:intergenic 55.0%
CAAGGGGAATGCGCTGCATG+CGG + chr2.3:48891310-48891329 MS.gene051195:CDS 60.0%
CCAGCAGTGTGACCCTGGTT+AGG + chr2.3:48888216-48888235 MS.gene051195:intron 60.0%
CCTAACCAGGGTCACACTGC+TGG - chr2.3:48888219-48888238 None:intergenic 60.0%
CTGCTTGATGTGCTCAGCCC+GGG - chr2.3:48891428-48891447 None:intergenic 60.0%
GACTTCAAGGGCCGTAGAGC+TGG + chr2.3:48888045-48888064 MS.gene051195:CDS 60.0%
CGAGGGAGTGGACGACGAAG+AGG + chr2.3:48891282-48891301 MS.gene051195:CDS 65.0%
GGGAGTGGACGACGAAGAGG+AGG + chr2.3:48891285-48891304 MS.gene051195:CDS 65.0%
TTGATGTGCTCAGCCCGGGC+AGG - chr2.3:48891424-48891443 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 48887985 48891489 48887985 ID=MS.gene051195
chr2.3 mRNA 48887985 48891489 48887985 ID=MS.gene051195.t1;Parent=MS.gene051195
chr2.3 exon 48887985 48888090 48887985 ID=MS.gene051195.t1.exon1;Parent=MS.gene051195.t1
chr2.3 CDS 48887985 48888090 48887985 ID=cds.MS.gene051195.t1;Parent=MS.gene051195.t1
chr2.3 exon 48888200 48888232 48888200 ID=MS.gene051195.t1.exon2;Parent=MS.gene051195.t1
chr2.3 CDS 48888200 48888232 48888200 ID=cds.MS.gene051195.t1;Parent=MS.gene051195.t1
chr2.3 exon 48889622 48889850 48889622 ID=MS.gene051195.t1.exon3;Parent=MS.gene051195.t1
chr2.3 CDS 48889622 48889850 48889622 ID=cds.MS.gene051195.t1;Parent=MS.gene051195.t1
chr2.3 exon 48890842 48890977 48890842 ID=MS.gene051195.t1.exon4;Parent=MS.gene051195.t1
chr2.3 CDS 48890842 48890977 48890842 ID=cds.MS.gene051195.t1;Parent=MS.gene051195.t1
chr2.3 exon 48891232 48891489 48891232 ID=MS.gene051195.t1.exon5;Parent=MS.gene051195.t1
chr2.3 CDS 48891232 48891489 48891232 ID=cds.MS.gene051195.t1;Parent=MS.gene051195.t1
Gene Sequence

>MS.gene051195

ATGGAACTTGCTGGTGATGGAACTCCGTTTGACCCTCGTACTGTTGAAGCTGTCTTCCGTGACTTCAAGGGCCGTAGAGCTGGCTTGATTAAAGCTCTCACCACTGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGCTTAATTCTCTCTCTTTTTTTTTTAATTTTGATTTTTGTTTTTTTAATTGTTTTTTTTTTTTGTTGTTATTGCAGATGTTGAAGATTTTTACCAGCAGTGTGACCCTGGTTAGGGTTTTTACTCTTGTTTTAAGATTGTTTTGTGTTTGTCGGTCTCAATTTATGTGTTTTTCATTTTATTTTTAAGATTGATGTTAATTTGTATACTTATATACTGTATTGTTTGTGGATTTGGGTTTGAATGATGAAAAAGTTTTTTTTTTTTTTTGAGAAAGATGAAATTTAATAGAGTGAGTTCAATTTTACTATTTTTTATTTTTTTATTTTTATTTTTATTTTTATAATTTTGCTGATTATGTGAACTTATGAACGTTGTGATTTGAATTGGGAAATTGAGATATTTTGAAAACAGCCCTTTTGCTGTGTGTGTAATGATGTTTCACTGTCAATGTTGTTAGATCCAGACCGGAGATAGAACCAGTGAGTTCAATCGGTTTAACCACAGTTAAAAATTACATGACTATTAAATTTAAAATATTTTAATTTTAAAAAATGAACTGGTTGGTTTGATCTGGTTCACAGTTGAACCAGCCAGTTCGATCTGGTTTTGACAATGTTGTCATTTGGACAAACTTGTTTTTCCTCGTTGTTGATCTATATAAGTAGTTTTCTCACAGACTTTGAAATCAGTCTGAATTGAAAAATGTTATGCTTCTTCTGAGTTCTGACCTACAATTTTTGCTATATTCTATATTCTGTTTGTATTGAATTGTTCTGATGAACTTATCTGGGCTTATTGTCTGCACTAATGCTGCATATGTGTCTGTTTTGGGTTTATTTTTCGTTTGCAATAAGTTGAATCTAATGAAAATTTGCCCTATGTGAATTGTGAAACCCTAAGAACAGCTCGGATTGTATATGTTTTCAAAAATGGTTTTTGACTGAATTAATGTTAATGAATATCCAAAATCCTATTATTTCATAAACCCTATGTGTATTTGATTTTGGATTGACATTGTTTAAAAAGGAATGAGTATGCTTGTGAATATCGTATTTTATTGAATGCCATGATATGTATGATTCTATGATTTTATTTCAATGCTGTATAAATCATGATTTAACACGTATAATTGTATGATTCTGTGTTTTTGAACCACTGCAATGATCCCAAATCTAGTAGAAATATCCATGTAGATTTCGTAGGATTGTGAGATCTTATCTATCTCAAACCGATACACCAAATCCAGTAACAACCCAACCCCGAATCCAGAAAAAAAAATTGAATTAACCCTTCATCTATTCTCAAGTGCTATGAAACTAAACTAGAAAACCTTTTACCTGGTGTTATATCAAACATATGTGCTTATTTCTTTTCTCTTTTTCTCATATGTTTGATTTATTTAATTATGTAATTTACAAGTAGTGCAGAAAAATGAATCGATGTATACTACATTATGAAATTTGTTGATGTGTTTTGTTTAACATGTTCTACATCAGAAAAGGAGAATCTTTCTCTGTATGGATATCCCGGTGAATTATGGGAAGTCACTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCAGAACCTGCATTGGGCATCAATTTTGCTAGGGATGGGATGCAAGAAAAGGATTGGCTATCTTTAGTTGCTGTTCACAGTGATACATGGCTTCTCTCTGTGGCTTTCTACTTCGGCGCAAGATTTGGCTTTGATAAAGCCGACAGGTATGATAATTCTTTTCCTCCAATCCTTTATTATGTTATGGAATGTTTGGAACCGCGTCTCCGTTAATCGTTATATTTCTTGTGTCCCAAAACATTTTTGCCGTGTTTTTTCCTGAAGCTACAAGTTGTAGCATGAGCCTAAACATGTGTTCAGCACTTACACACCACATATATACAAACATATACTTATTCTTTCACTTTTCAGTGTTCATTTTCTGTTCTGATTGAGATCATATGTGGATGCATCTCATTTTCTTTTACTGCTGAACTTATGTTTCTTATGCGGCAATATTGATTTGGTTTACTTTGTCAGTTAAAATCAGCATAAAATATAAACCACTTCCTTGCTTAAATTGTCAAAAGAAATAGTGTGGAGAGGAAGACTGAGATTGTTCTCAGCTATGTGTATCTATGCAATATTTAACATATTCTCCTTATTTATGATGCATGGGAAGATTTTCGGTCATGACAAACTTTTATGATGTTGACAAGATCCATCTACTGCCTATAGTTTGCATTTAGTTTTGTGTTATGCAATATCAAAATGGAAAAATAGTTTGAAAATGTTTTTTGCAGTTGAACAATTCTTTTAACAGTTCAATGACTGCTTTCTTGTCAGTCACATCACTCATGCTCATCAGGGAGGAATGATCTCTTATCAAGAATTTTCATTTGAGATTCTAAGCTTTTCTCTCTTTATGCAAAATAGGTTGTTTGACACTTAGCATTGTTTTCATGGATCTACATGACAGTCTGTTAGCAATAAAATTTCCATGCGCATCTCTATGTTTGATGCTTAGCATTGTTTGCATGGGTCTACATGACATGTTATTAGCAATACAATTTGTGTGTGCAAGTGCATTGGTCTGAACTTGTGTGTTTATGAATGTCAAGAAGATTACAAAAATGAAAAACAAAAATTAGTTCATTTGAATCAAGTATACGTGCTATTTATATCCTGATCTGTGATACATTGTAATTCTTCATGTAGGAAACGCCTTTTCACTCTGATTAATGATCTGCCAACAATATTTGAGGTTGTGACCGGATCTGCTAAGAAGCAGACTAAGGAAAAGCCATCTGTCTCAAGTCACAACAGCAACAAGTCAAAGTCAGGCTCAAAAGCGGTAAATAATTCTTCAACCTTCTCTCTTCCTTGTATATTTTCATTTTTATTTCTTCTTCTAGCTTTTTAGTAACATAATTGCATTATTCATTGTTTTGTACTCGAGTGATGCATCAACACTAGCTCTGTCACTATTGTAGATTCATATATTTTGCTTGAATAGATGTAGGAAATGTCTTATAATAATGCTGAATGGAGTCGTCGGTAGTTATTTCCTTACAAATATGTGTTGCTCACGATTGTTTCCTCATGCAGCGTGGATCTGAACTGGCAAAGTATTCAAAGCCGCCAGCAAAAGAAGATGACGAGGGAGTGGACGACGAAGAGGAGGATCAAGGGGAATGCGCTGCATGCGGTGAAAGCTATGTATCTGCATCAGATGAGTTCTGGATCTGCTGTGACATATGCGAGAAGTGGTATCATGGAAAATGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAGCAGTACAAGTGTCCTGCCTGCAACAATAAGAGAGTCCGGCCTTGA
Protein sequence

>MS.gene051195.t1

MELAGDGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKRLFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEGVDDEEEDQGECAACGESYVSASDEFWICCDICEKWYHGKCVKITPARAEHIKQYKCPACNNKRVRP