AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051472

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051472.t1 MTR_1g063870 93.720 207 10 3 1 206 1 205 1.85e-102 294
MS.gene051472.t1 MTR_7g028160 61.538 104 35 2 15 118 20 118 1.45e-36 129
MS.gene051472.t1 MTR_2g006150 60.000 100 29 1 14 113 105 193 2.98e-35 129
MS.gene051472.t1 MTR_2g006150 60.000 100 29 1 14 113 105 193 3.16e-35 129
MS.gene051472.t1 MTR_5g039600 58.559 111 42 1 14 124 35 141 3.37e-35 128
MS.gene051472.t1 MTR_8g033070 78.378 74 16 0 49 122 79 152 3.93e-35 126
MS.gene051472.t1 MTR_4g108370 73.171 82 19 1 31 112 81 159 6.14e-35 128
MS.gene051472.t1 MTR_1g114380 72.500 80 17 2 34 112 20 95 1.83e-34 123
MS.gene051472.t1 MTR_1g038650 68.235 85 21 2 39 121 25 105 4.70e-34 121
MS.gene051472.t1 MTR_1g101810 73.077 78 21 0 45 122 59 136 1.55e-33 122
MS.gene051472.t1 MTR_1g101810 73.077 78 21 0 45 122 89 166 3.05e-33 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051472.t1 AT2G37000 55.556 144 46 4 50 192 43 169 5.89e-40 135
MS.gene051472.t1 AT1G58100 55.932 118 41 1 48 154 58 175 5.91e-36 130
MS.gene051472.t1 AT1G69690 67.816 87 25 2 28 113 31 115 1.19e-35 128
MS.gene051472.t1 AT1G72010 72.973 74 20 0 39 112 52 125 6.93e-35 127
MS.gene051472.t1 AT5G08330 76.316 76 14 1 50 121 31 106 7.41e-35 124
MS.gene051472.t1 AT3G47620 76.000 75 17 1 39 112 105 179 1.00e-34 128
MS.gene051472.t1 AT3G27010 63.636 99 29 3 19 111 42 139 1.16e-34 125
MS.gene051472.t1 AT3G27010 63.636 99 29 3 19 111 42 139 1.16e-34 125
MS.gene051472.t1 AT2G45680 77.027 74 17 0 49 122 74 147 5.91e-34 124
MS.gene051472.t1 AT5G23280 65.556 90 30 1 51 140 40 128 1.38e-33 120
MS.gene051472.t1 AT5G51910 70.370 81 23 1 43 122 49 129 4.23e-32 118
MS.gene051472.t1 AT5G51910 70.370 81 23 1 43 122 49 129 4.23e-32 118
MS.gene051472.t1 AT1G35560 78.462 65 14 0 48 112 53 117 8.14e-32 118
MS.gene051472.t1 AT5G41030 59.302 86 32 1 47 132 65 147 8.17e-31 113
MS.gene051472.t1 AT3G45150 45.455 99 50 2 48 142 15 113 3.05e-22 89.0
MS.gene051472.t1 AT1G58100 88.571 35 4 0 48 82 58 92 2.65e-15 73.9

Find 87 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAGGTTTGGTTTCTGAT+TGG 0.356554 1.1:-48258213 None:intergenic
CGACTGTTGGTCCCGGCGGT+GGG 0.370781 1.1:+48258581 MS.gene051472:CDS
CCTGTCTCAGCCGGCGGGGA+TGG 0.373484 1.1:+48258657 MS.gene051472:CDS
ACGACTGTTGGTCCCGGCGG+TGG 0.375769 1.1:+48258580 MS.gene051472:CDS
ACTGTTGGTCCCGGCGGTGG+GGG 0.398278 1.1:+48258583 MS.gene051472:CDS
CGGTCCGGCGGGGACAGTTC+CGG 0.401737 1.1:-48258491 None:intergenic
GGTAGGTTTGGTTTCTGATT+GGG 0.407068 1.1:-48258212 None:intergenic
TGTTACGGCGGTGGTAGGTT+TGG 0.414434 1.1:-48258224 None:intergenic
TCGGACGGTGAGTTTGGTGT+TGG 0.415353 1.1:-48258275 None:intergenic
CGGACGGTGAGTTTGGTGTT+GGG 0.422384 1.1:-48258274 None:intergenic
AGGTCTTCGGACGGTGAGTT+TGG 0.426516 1.1:-48258281 None:intergenic
CAGCCGGCGGGGATGGATTA+CGG 0.432604 1.1:+48258664 MS.gene051472:CDS
CTTGGTGTGACGGTCTTTAG+TGG 0.437844 1.1:-48258317 None:intergenic
GGTGGCGACGGTGGTTGTTA+CGG 0.437898 1.1:-48258239 None:intergenic
GACTGTTGGTCCCGGCGGTG+GGG 0.441550 1.1:+48258582 MS.gene051472:CDS
TTTGGTGTTGGGATCGGAAG+AGG 0.447134 1.1:-48258263 None:intergenic
GCATACGGACACGGCGGCCA+CGG 0.450952 1.1:-48258348 None:intergenic
GGCCTAGCTCACGTGTGAGC+TGG 0.455067 1.1:-48258396 None:intergenic
GTTGGGATCGGAAGAGGTGG+TGG 0.463601 1.1:-48258257 None:intergenic
CGGCAGCTCGGCTGTTGCAT+CGG 0.466946 1.1:-48258628 None:intergenic
CCATCCCCGCCGGCTGAGAC+AGG 0.467844 1.1:-48258657 None:intergenic
CCGTCGATCATCGCCGCTAC+AGG 0.469019 1.1:+48258466 MS.gene051472:CDS
ATCGAGAGGTGGAAGGTCTT+CGG 0.469473 1.1:-48258294 None:intergenic
CTTGACCTGTCTCAGCCGGC+GGG 0.470366 1.1:+48258652 MS.gene051472:CDS
TTCTCCGTTTAAGTCTTCCT+CGG 0.470391 1.1:+48258525 MS.gene051472:CDS
CGGAACTGTCCCCGCCGGAC+CGG 0.473172 1.1:+48258492 MS.gene051472:CDS
GGCCGTTGACCTTGGTGTGA+CGG 0.473677 1.1:-48258327 None:intergenic
AACGGAGAAGAGGTGGAAAC+CGG 0.477385 1.1:-48258511 None:intergenic
GAGGTGGAAACCGGTCCGGC+GGG 0.478968 1.1:-48258502 None:intergenic
CGGCGCAGAGTGGCGGCATA+CGG 0.487397 1.1:-48258363 None:intergenic
ATCGGAAGAGGTGGTGGCGA+CGG 0.493308 1.1:-48258251 None:intergenic
GCGGCCACGGCCGTTGACCT+TGG 0.496284 1.1:-48258335 None:intergenic
GGTGAGTTTGGTGTTGGGAT+CGG 0.500790 1.1:-48258269 None:intergenic
CAGCTCGGCTGTTGCATCGG+CGG 0.511331 1.1:-48258625 None:intergenic
CCTGTGACGACTGTTGGTCC+CGG 0.512876 1.1:+48258574 MS.gene051472:CDS
GGTGTTGGGATCGGAAGAGG+TGG 0.520667 1.1:-48258260 None:intergenic
CTGTTGGTCCCGGCGGTGGG+GGG 0.522672 1.1:+48258584 MS.gene051472:CDS
AGAAGAGGTGGAAACCGGTC+CGG 0.523967 1.1:-48258506 None:intergenic
CACACCAAGGTCAACGGCCG+TGG 0.526935 1.1:+48258331 MS.gene051472:CDS
ATCATCGCCGCTACAGGTAC+CGG 0.527492 1.1:+48258472 MS.gene051472:CDS
GTGGTTGTTACGGCGGTGGT+AGG 0.528977 1.1:-48258229 None:intergenic
TTCCAGCTCACACGTGAGCT+AGG 0.539335 1.1:+48258394 MS.gene051472:CDS
TAAGTCTTCCTCGGTGCCGT+CGG 0.539714 1.1:+48258534 MS.gene051472:CDS
CCGTCTTGACCTGTCTCAGC+CGG 0.539844 1.1:+48258648 MS.gene051472:CDS
AGAGGTGGAAACCGGTCCGG+CGG 0.541236 1.1:-48258503 None:intergenic
GACGGTGGTTGTTACGGCGG+TGG 0.541696 1.1:-48258233 None:intergenic
GGCACCGAGGAAGACTTAAA+CGG 0.544702 1.1:-48258529 None:intergenic
ATTCTAGCGGCGCAGAGTGG+CGG 0.558629 1.1:-48258370 None:intergenic
CCGGGACCAACAGTCGTCAC+AGG 0.561674 1.1:-48258574 None:intergenic
TCTTGACCTGTCTCAGCCGG+CGG 0.565908 1.1:+48258651 MS.gene051472:CDS
GGAAGAGGTGGTGGCGACGG+TGG 0.571531 1.1:-48258248 None:intergenic
GACAGTTCCGGTACCTGTAG+CGG 0.580616 1.1:-48258479 None:intergenic
CCTGTAGCGGCGATGATCGA+CGG 0.581417 1.1:-48258466 None:intergenic
GACCGTCACACCAAGGTCAA+CGG 0.592588 1.1:+48258325 MS.gene051472:CDS
GTCTTTAGTGGATCGAGAGG+TGG 0.595562 1.1:-48258305 None:intergenic
TGCAAAAGCAGCGACGTGAA+CGG 0.596315 1.1:-48258712 None:intergenic
AGACTTAAACGGAGAAGAGG+TGG 0.603538 1.1:-48258518 None:intergenic
CGATCGTTTCACCGTCGGAA+CGG 0.605281 1.1:-48258420 None:intergenic
GTGCCGTAATCCATCCCCGC+CGG 0.610684 1.1:-48258667 None:intergenic
GACAGGTCAAGACGGCAGCT+CGG 0.611079 1.1:-48258640 None:intergenic
TACAACAATGTCTTCATCAG+AGG 0.612302 1.1:+48258165 None:intergenic
TGGATTACGGCACGGCGAGT+AGG 0.614506 1.1:+48258677 MS.gene051472:CDS
GGAAGACTTAAACGGAGAAG+AGG 0.618830 1.1:-48258521 None:intergenic
GTTCAGCCTGTGACGACTGT+TGG 0.621754 1.1:+48258568 MS.gene051472:CDS
GAGCTAGGCCACCGTTCCGA+CGG 0.628511 1.1:+48258409 MS.gene051472:CDS
CCGGCTGAGACAGGTCAAGA+CGG 0.630042 1.1:-48258648 None:intergenic
AGAGTGGCGGCATACGGACA+CGG 0.630769 1.1:-48258357 None:intergenic
ATTGGGTTTGAGAGAATGTG+TGG 0.635459 1.1:-48258195 None:intergenic
TCGTTTCACCGTCGGAACGG+TGG 0.636702 1.1:-48258417 None:intergenic
AGGTGGAAACCGGTCCGGCG+GGG 0.639096 1.1:-48258501 None:intergenic
GGTACCGGAACTGTCCCCGC+CGG 0.641499 1.1:+48258487 MS.gene051472:CDS
GGCGACGGTGGTTGTTACGG+CGG 0.645530 1.1:-48258236 None:intergenic
CCACTCGATCGTTTCACCGT+CGG 0.646740 1.1:-48258425 None:intergenic
ACGGTCTTTAGTGGATCGAG+AGG 0.661410 1.1:-48258308 None:intergenic
GGCGGGGATGGATTACGGCA+CGG 0.663996 1.1:+48258669 MS.gene051472:CDS
TTAGTGGATCGAGAGGTGGA+AGG 0.665756 1.1:-48258301 None:intergenic
CACTAAAGACCGTCACACCA+AGG 0.674968 1.1:+48258318 MS.gene051472:CDS
ACAAGAAACCGACGGCACCG+AGG 0.684600 1.1:-48258542 None:intergenic
AGAGGTGGAAGGTCTTCGGA+CGG 0.686301 1.1:-48258290 None:intergenic
TTGACCTGTCTCAGCCGGCG+GGG 0.687922 1.1:+48258653 MS.gene051472:CDS
TGAACATGACAAGAAACCGA+CGG 0.690502 1.1:-48258550 None:intergenic
AAGATTCTAGCGGCGCAGAG+TGG 0.698200 1.1:-48258373 None:intergenic
CCGACGGTGAAACGATCGAG+TGG 0.701087 1.1:+48258425 MS.gene051472:CDS
TGTGAGCTGGAAGATTCTAG+CGG 0.731020 1.1:-48258383 None:intergenic
TTTGCAACCGTCGACCACGG+GGG 0.740183 1.1:+48258729 MS.gene051472:CDS
GTGACGACTGTTGGTCCCGG+CGG 0.740863 1.1:+48258577 MS.gene051472:CDS
GTGGCGGCATACGGACACGG+CGG 0.797562 1.1:-48258354 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATTGGGTTTGAGAGAATGTG+TGG - chr1.1:48258198-48258217 None:intergenic 40.0%
TGAACATGACAAGAAACCGA+CGG - chr1.1:48258553-48258572 None:intergenic 40.0%
TTCTCCGTTTAAGTCTTCCT+CGG + chr1.1:48258525-48258544 MS.gene051472:CDS 40.0%
! GGTAGGTTTGGTTTCTGATT+GGG - chr1.1:48258215-48258234 None:intergenic 40.0%
! TGGTAGGTTTGGTTTCTGAT+TGG - chr1.1:48258216-48258235 None:intergenic 40.0%
AGACTTAAACGGAGAAGAGG+TGG - chr1.1:48258521-48258540 None:intergenic 45.0%
GGAAGACTTAAACGGAGAAG+AGG - chr1.1:48258524-48258543 None:intergenic 45.0%
TGTGAGCTGGAAGATTCTAG+CGG - chr1.1:48258386-48258405 None:intergenic 45.0%
AACGGAGAAGAGGTGGAAAC+CGG - chr1.1:48258514-48258533 None:intergenic 50.0%
ATCGAGAGGTGGAAGGTCTT+CGG - chr1.1:48258297-48258316 None:intergenic 50.0%
CACTAAAGACCGTCACACCA+AGG + chr1.1:48258318-48258337 MS.gene051472:CDS 50.0%
TGCAAAAGCAGCGACGTGAA+CGG - chr1.1:48258715-48258734 None:intergenic 50.0%
! ACGGTCTTTAGTGGATCGAG+AGG - chr1.1:48258311-48258330 None:intergenic 50.0%
! CTTGGTGTGACGGTCTTTAG+TGG - chr1.1:48258320-48258339 None:intergenic 50.0%
! GGCACCGAGGAAGACTTAAA+CGG - chr1.1:48258532-48258551 None:intergenic 50.0%
! GTCTTTAGTGGATCGAGAGG+TGG - chr1.1:48258308-48258327 None:intergenic 50.0%
! TTAGTGGATCGAGAGGTGGA+AGG - chr1.1:48258304-48258323 None:intergenic 50.0%
!! GGTGAGTTTGGTGTTGGGAT+CGG - chr1.1:48258272-48258291 None:intergenic 50.0%
!! TTTGGTGTTGGGATCGGAAG+AGG - chr1.1:48258266-48258285 None:intergenic 50.0%
AAGATTCTAGCGGCGCAGAG+TGG - chr1.1:48258376-48258395 None:intergenic 55.0%
AGAAGAGGTGGAAACCGGTC+CGG - chr1.1:48258509-48258528 None:intergenic 55.0%
AGAGGTGGAAGGTCTTCGGA+CGG - chr1.1:48258293-48258312 None:intergenic 55.0%
AGGTCTTCGGACGGTGAGTT+TGG - chr1.1:48258284-48258303 None:intergenic 55.0%
ATCATCGCCGCTACAGGTAC+CGG + chr1.1:48258472-48258491 MS.gene051472:CDS 55.0%
CCACTCGATCGTTTCACCGT+CGG - chr1.1:48258428-48258447 None:intergenic 55.0%
CGATCGTTTCACCGTCGGAA+CGG - chr1.1:48258423-48258442 None:intergenic 55.0%
GACAGTTCCGGTACCTGTAG+CGG - chr1.1:48258482-48258501 None:intergenic 55.0%
GACCGTCACACCAAGGTCAA+CGG + chr1.1:48258325-48258344 MS.gene051472:CDS 55.0%
GTTCAGCCTGTGACGACTGT+TGG + chr1.1:48258568-48258587 MS.gene051472:CDS 55.0%
TGTTACGGCGGTGGTAGGTT+TGG - chr1.1:48258227-48258246 None:intergenic 55.0%
TTCCAGCTCACACGTGAGCT+AGG + chr1.1:48258394-48258413 MS.gene051472:CDS 55.0%
! CTTTTGCAACCGTCGACCAC+GGG + chr1.1:48258727-48258746 MS.gene051472:CDS 55.0%
! GCTTTTGCAACCGTCGACCA+CGG + chr1.1:48258726-48258745 MS.gene051472:CDS 55.0%
! TTTTGCAACCGTCGACCACG+GGG + chr1.1:48258728-48258747 MS.gene051472:CDS 55.0%
!! CGGACGGTGAGTTTGGTGTT+GGG - chr1.1:48258277-48258296 None:intergenic 55.0%
!! TAAGTCTTCCTCGGTGCCGT+CGG + chr1.1:48258534-48258553 MS.gene051472:CDS 55.0%
!! TCGGACGGTGAGTTTGGTGT+TGG - chr1.1:48258278-48258297 None:intergenic 55.0%
!! TTGTTGATTCTCCTCCCCCG+TGG - chr1.1:48258746-48258765 None:intergenic 55.0%
ACAAGAAACCGACGGCACCG+AGG - chr1.1:48258545-48258564 None:intergenic 60.0%
AGAGTGGCGGCATACGGACA+CGG - chr1.1:48258360-48258379 None:intergenic 60.0%
ATTCTAGCGGCGCAGAGTGG+CGG - chr1.1:48258373-48258392 None:intergenic 60.0%
CCGACGGTGAAACGATCGAG+TGG + chr1.1:48258425-48258444 MS.gene051472:CDS 60.0%
CCGGCTGAGACAGGTCAAGA+CGG - chr1.1:48258651-48258670 None:intergenic 60.0%
CCGTCTTGACCTGTCTCAGC+CGG + chr1.1:48258648-48258667 MS.gene051472:CDS 60.0%
CCTGTAGCGGCGATGATCGA+CGG - chr1.1:48258469-48258488 None:intergenic 60.0%
CCTGTGACGACTGTTGGTCC+CGG + chr1.1:48258574-48258593 MS.gene051472:CDS 60.0%
GACAGGTCAAGACGGCAGCT+CGG - chr1.1:48258643-48258662 None:intergenic 60.0%
GGTGGCGACGGTGGTTGTTA+CGG - chr1.1:48258242-48258261 None:intergenic 60.0%
GTGGTTGTTACGGCGGTGGT+AGG - chr1.1:48258232-48258251 None:intergenic 60.0%
GTTGGGATCGGAAGAGGTGG+TGG - chr1.1:48258260-48258279 None:intergenic 60.0%
TCGTTTCACCGTCGGAACGG+TGG - chr1.1:48258420-48258439 None:intergenic 60.0%
TCTTGACCTGTCTCAGCCGG+CGG + chr1.1:48258651-48258670 MS.gene051472:CDS 60.0%
TGGATTACGGCACGGCGAGT+AGG + chr1.1:48258677-48258696 MS.gene051472:CDS 60.0%
TTTGCAACCGTCGACCACGG+GGG + chr1.1:48258729-48258748 MS.gene051472:CDS 60.0%
! ATCGGAAGAGGTGGTGGCGA+CGG - chr1.1:48258254-48258273 None:intergenic 60.0%
! CGGTGGGGGGATTTTCGGTA+TGG + chr1.1:48258597-48258616 MS.gene051472:CDS 60.0%
! GGCCGTTGACCTTGGTGTGA+CGG - chr1.1:48258330-48258349 None:intergenic 60.0%
! GGTGTTGGGATCGGAAGAGG+TGG - chr1.1:48258263-48258282 None:intergenic 60.0%
ACCGAAAATCCCCCCACCGC+CGG - chr1.1:48258596-48258615 None:intergenic 65.0%
AGAGGTGGAAACCGGTCCGG+CGG - chr1.1:48258506-48258525 None:intergenic 65.0%
CACACCAAGGTCAACGGCCG+TGG + chr1.1:48258331-48258350 MS.gene051472:CDS 65.0%
CAGCTCGGCTGTTGCATCGG+CGG - chr1.1:48258628-48258647 None:intergenic 65.0%
CCGGGACCAACAGTCGTCAC+AGG - chr1.1:48258577-48258596 None:intergenic 65.0%
CCGTCGATCATCGCCGCTAC+AGG + chr1.1:48258466-48258485 MS.gene051472:CDS 65.0%
CGGCAGCTCGGCTGTTGCAT+CGG - chr1.1:48258631-48258650 None:intergenic 65.0%
CTTGACCTGTCTCAGCCGGC+GGG + chr1.1:48258652-48258671 MS.gene051472:CDS 65.0%
GACGGTGGTTGTTACGGCGG+TGG - chr1.1:48258236-48258255 None:intergenic 65.0%
GAGCTAGGCCACCGTTCCGA+CGG + chr1.1:48258409-48258428 MS.gene051472:CDS 65.0%
GGCCTAGCTCACGTGTGAGC+TGG - chr1.1:48258399-48258418 None:intergenic 65.0%
GGCGACGGTGGTTGTTACGG+CGG - chr1.1:48258239-48258258 None:intergenic 65.0%
GTGACGACTGTTGGTCCCGG+CGG + chr1.1:48258577-48258596 MS.gene051472:CDS 65.0%
GTGCCGTAATCCATCCCCGC+CGG - chr1.1:48258670-48258689 None:intergenic 65.0%
TTCTCCTCCCCCGTGGTCGA+CGG - chr1.1:48258739-48258758 None:intergenic 65.0%
TTGACCTGTCTCAGCCGGCG+GGG + chr1.1:48258653-48258672 MS.gene051472:CDS 65.0%
!! CAGCCGGCGGGGATGGATTA+CGG + chr1.1:48258664-48258683 MS.gene051472:CDS 65.0%
!! GGCGGGGATGGATTACGGCA+CGG + chr1.1:48258669-48258688 MS.gene051472:CDS 65.0%
ACGACTGTTGGTCCCGGCGG+TGG + chr1.1:48258580-48258599 MS.gene051472:CDS 70.0%
ACTGTTGGTCCCGGCGGTGG+GGG + chr1.1:48258583-48258602 MS.gene051472:CDS 70.0%
AGGTGGAAACCGGTCCGGCG+GGG - chr1.1:48258504-48258523 None:intergenic 70.0%
CCGAAAATCCCCCCACCGCC+GGG - chr1.1:48258595-48258614 None:intergenic 70.0%
CGACTGTTGGTCCCGGCGGT+GGG + chr1.1:48258581-48258600 MS.gene051472:CDS 70.0%
CGGCGCAGAGTGGCGGCATA+CGG - chr1.1:48258366-48258385 None:intergenic 70.0%
GACTGTTGGTCCCGGCGGTG+GGG + chr1.1:48258582-48258601 MS.gene051472:CDS 70.0%
GAGGTGGAAACCGGTCCGGC+GGG - chr1.1:48258505-48258524 None:intergenic 70.0%
GCATACGGACACGGCGGCCA+CGG - chr1.1:48258351-48258370 None:intergenic 70.0%
GTGGCGGCATACGGACACGG+CGG - chr1.1:48258357-48258376 None:intergenic 70.0%
! CCCGGCGGTGGGGGGATTTT+CGG + chr1.1:48258592-48258611 MS.gene051472:CDS 70.0%
! GGAAGAGGTGGTGGCGACGG+TGG - chr1.1:48258251-48258270 None:intergenic 70.0%
! GGTACCGGAACTGTCCCCGC+CGG + chr1.1:48258487-48258506 MS.gene051472:CDS 70.0%
CCTGTCTCAGCCGGCGGGGA+TGG + chr1.1:48258657-48258676 MS.gene051472:CDS 75.0%
CGGAACTGTCCCCGCCGGAC+CGG + chr1.1:48258492-48258511 MS.gene051472:CDS 75.0%
CGGTCCGGCGGGGACAGTTC+CGG - chr1.1:48258494-48258513 None:intergenic 75.0%
CTGTTGGTCCCGGCGGTGGG+GGG + chr1.1:48258584-48258603 MS.gene051472:CDS 75.0%
GCAACCGTCGACCACGGGGG+AGG + chr1.1:48258732-48258751 MS.gene051472:CDS 75.0%
GCGGCCACGGCCGTTGACCT+TGG - chr1.1:48258338-48258357 None:intergenic 75.0%
! CCATCCCCGCCGGCTGAGAC+AGG - chr1.1:48258660-48258679 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 48258172 48258792 48258172 ID=MS.gene051472
chr1.1 mRNA 48258172 48258792 48258172 ID=MS.gene051472.t1;Parent=MS.gene051472
chr1.1 exon 48258172 48258792 48258172 ID=MS.gene051472.t1.exon1;Parent=MS.gene051472.t1
chr1.1 CDS 48258172 48258792 48258172 ID=cds.MS.gene051472.t1;Parent=MS.gene051472.t1
Gene Sequence

>MS.gene051472

ATGTCTTCATCAGAGGTAGTTATCCACACATTCTCTCAAACCCAATCAGAAACCAAACCTACCACCGCCGTAACAACCACCGTCGCCACCACCTCTTCCGATCCCAACACCAAACTCACCGTCCGAAGACCTTCCACCTCTCGATCCACTAAAGACCGTCACACCAAGGTCAACGGCCGTGGCCGCCGTGTCCGTATGCCGCCACTCTGCGCCGCTAGAATCTTCCAGCTCACACGTGAGCTAGGCCACCGTTCCGACGGTGAAACGATCGAGTGGCTTCTTCGTCATGCTGAGCCGTCGATCATCGCCGCTACAGGTACCGGAACTGTCCCCGCCGGACCGGTTTCCACCTCTTCTCCGTTTAAGTCTTCCTCGGTGCCGTCGGTTTCTTGTCATGTTCAGCCTGTGACGACTGTTGGTCCCGGCGGTGGGGGGATTTTCGGTATGGCTTTGCCGCCGATGCAACAGCCGAGCTGCCGTCTTGACCTGTCTCAGCCGGCGGGGATGGATTACGGCACGGCGAGTAGGTATCGTCATATGCCGTTCACGTCGCTGCTTTTGCAACCGTCGACCACGGGGGAGGAGAATCAACAAGAAGAAGAAGCTCTTAACGAACAATGA
Protein sequence

>MS.gene051472.t1

MSSSEVVIHTFSQTQSETKPTTAVTTTVATTSSDPNTKLTVRRPSTSRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPVSTSSPFKSSSVPSVSCHVQPVTTVGPGGGGIFGMALPPMQQPSCRLDLSQPAGMDYGTASRYRHMPFTSLLLQPSTTGEENQQEEEALNEQ