Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051549.t1 | XP_024631067.1 | 99.6 | 264 | 1 | 0 | 1 | 264 | 1 | 264 | 5.90E-113 | 417.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051549.t1 | Q5XEM9 | 83.8 | 259 | 38 | 1 | 6 | 264 | 6 | 260 | 6.6e-97 | 355.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051549.t1 | A0A072VES1 | 99.2 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 8.0e-112 | 412.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene051549.t1 | TF | Alfin-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051549.t1 | MTR_1g015185 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
MS.gene051549.t1 | MTR_8g019520 | 76.923 | 260 | 48 | 3 | 8 | 264 | 7 | 257 | 1.18e-130 | 370 |
MS.gene051549.t1 | MTR_8g019520 | 78.378 | 259 | 45 | 3 | 8 | 264 | 7 | 256 | 2.40e-130 | 369 |
MS.gene051549.t1 | MTR_2g040990 | 74.809 | 262 | 49 | 3 | 5 | 264 | 7 | 253 | 5.05e-125 | 356 |
MS.gene051549.t1 | MTR_1g015185 | 98.788 | 165 | 1 | 1 | 1 | 165 | 1 | 164 | 5.01e-118 | 336 |
MS.gene051549.t1 | MTR_4g134510 | 70.588 | 255 | 64 | 3 | 10 | 263 | 10 | 254 | 3.74e-113 | 326 |
MS.gene051549.t1 | MTR_2g099500 | 72.441 | 254 | 60 | 3 | 11 | 263 | 6 | 250 | 7.29e-111 | 320 |
MS.gene051549.t1 | MTR_4g015830 | 62.500 | 256 | 75 | 5 | 9 | 264 | 6 | 240 | 8.71e-95 | 279 |
MS.gene051549.t1 | MTR_7g068590 | 62.500 | 256 | 77 | 6 | 9 | 264 | 6 | 242 | 2.12e-92 | 273 |
MS.gene051549.t1 | MTR_8g066480 | 51.034 | 145 | 43 | 4 | 121 | 264 | 29 | 146 | 1.14e-28 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051549.t1 | AT5G20510 | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 5.83e-124 | 353 |
MS.gene051549.t1 | AT3G42790 | 72.348 | 264 | 57 | 3 | 1 | 263 | 1 | 249 | 1.04e-122 | 350 |
MS.gene051549.t1 | AT2G02470 | 70.196 | 255 | 69 | 3 | 10 | 264 | 9 | 256 | 8.88e-111 | 320 |
MS.gene051549.t1 | AT2G02470 | 67.578 | 256 | 65 | 3 | 10 | 264 | 9 | 247 | 2.23e-109 | 316 |
MS.gene051549.t1 | AT5G26210 | 78.077 | 260 | 49 | 1 | 4 | 263 | 3 | 254 | 2.05e-108 | 314 |
MS.gene051549.t1 | AT1G14510 | 67.063 | 252 | 71 | 2 | 10 | 261 | 9 | 248 | 6.13e-107 | 310 |
MS.gene051549.t1 | AT5G20510 | 71.364 | 220 | 59 | 2 | 45 | 264 | 4 | 219 | 4.11e-98 | 286 |
MS.gene051549.t1 | AT5G05610 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.33e-97 | 286 |
MS.gene051549.t1 | AT5G05610 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.33e-97 | 286 |
MS.gene051549.t1 | AT3G11200 | 61.977 | 263 | 82 | 3 | 1 | 263 | 1 | 245 | 1.27e-96 | 283 |
MS.gene051549.t1 | AT5G20510 | 77.914 | 163 | 36 | 0 | 6 | 168 | 6 | 168 | 1.42e-82 | 246 |
MS.gene051549.t1 | AT3G11200 | 62.100 | 219 | 65 | 3 | 45 | 263 | 32 | 232 | 3.19e-80 | 241 |
MS.gene051549.t1 | AT2G02470 | 79.333 | 150 | 30 | 1 | 10 | 159 | 9 | 157 | 3.00e-72 | 222 |
Find 64 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGAAAATCTTTGCCTTTA+TGG | 0.094878 | 1.3:+6985978 | MS.gene051549:CDS |
AGAAAAGGATTGGCTATCTT+TGG | 0.280443 | 1.3:+6986103 | MS.gene051549:CDS |
GGTGGTGAGGGCTTTAATTA+AGG | 0.291324 | 1.3:-6983780 | None:intergenic |
ACAATCTTTGAAGTTGTTAC+AGG | 0.306235 | 1.3:+6986697 | MS.gene051549:CDS |
CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 1.3:-6986773 | None:intergenic |
GCTATGCAGCTGATGAGTTC+TGG | 0.348702 | 1.3:+6987487 | MS.gene051549:CDS |
TTTGAAGTTGTTACAGGGTC+TGG | 0.380524 | 1.3:+6986703 | MS.gene051549:CDS |
GCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1.3:-6986779 | None:intergenic |
GTAACAACTTCAAAGATTGT+TGG | 0.390377 | 1.3:-6986694 | None:intergenic |
TTGATATGCTCAGCTCTTGC+CGG | 0.393211 | 1.3:-6987564 | None:intergenic |
CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 1.3:+6986774 | MS.gene051549:CDS |
TTAATACCCAATGCTGGCTC+TGG | 0.427895 | 1.3:-6986059 | None:intergenic |
TTGGATTTGACAAGGCTGAT+AGG | 0.428891 | 1.3:+6986183 | MS.gene051549:CDS |
GGTATTAACTTTGCTAGAGA+TGG | 0.438852 | 1.3:+6986074 | MS.gene051549:CDS |
TCAGGCGGCACTTCCTCAGC+TGG | 0.444344 | 1.3:-6986032 | None:intergenic |
GCTCACTCGGAAATCCATAA+AGG | 0.453258 | 1.3:-6985992 | None:intergenic |
AATGCTGGCTCTGGAAGCTC+AGG | 0.453734 | 1.3:-6986050 | None:intergenic |
GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1.3:-6987600 | None:intergenic |
ATTTGCATTGCCATTGCCAT+TGG | 0.474776 | 1.3:-6987366 | None:intergenic |
TTCACCTCCCACTGCTCACT+CGG | 0.492311 | 1.3:-6986005 | None:intergenic |
TCGACAGTACGAGGGTTGTA+CGG | 0.497527 | 1.3:-6983722 | None:intergenic |
GCTGCGACATATGTGAGAAA+TGG | 0.501712 | 1.3:+6987514 | MS.gene051549:CDS |
TGATGCTTGGTTGCTTTCTG+TGG | 0.503077 | 1.3:+6986139 | MS.gene051549:CDS |
TTCTACCAGCAGTGTGATCC+CGG | 0.504757 | 1.3:+6983918 | MS.gene051549:CDS |
ACAACAACCATGGACGTTGT+AGG | 0.512436 | 1.3:+6983695 | None:intergenic |
ATGGAATGCAAGAAAAGGAT+TGG | 0.512817 | 1.3:+6986093 | MS.gene051549:CDS |
AAGTTGTTACAGGGTCTGGC+AGG | 0.518216 | 1.3:+6986707 | MS.gene051549:CDS |
AGAAGACCGACCGGTGGTGA+GGG | 0.523124 | 1.3:-6983792 | None:intergenic |
TAGAGATGGAATGCAAGAAA+AGG | 0.524287 | 1.3:+6986088 | MS.gene051549:CDS |
GAGCTTCCAGAGCCAGCATT+GGG | 0.524583 | 1.3:+6986053 | MS.gene051549:CDS |
TTGCAGTACACAGTGATGCT+TGG | 0.538841 | 1.3:+6986126 | MS.gene051549:CDS |
GCAGTCAAAGGACGAGGTTG+AGG | 0.543343 | 1.3:+6987389 | MS.gene051549:CDS |
ACAGGGTCTGGCAGGAAACA+AGG | 0.548267 | 1.3:+6986715 | MS.gene051549:CDS |
AGGTGTGGACGAGGAAGATG+AGG | 0.549480 | 1.3:+6987425 | MS.gene051549:CDS |
TGCTAGGTTTGGATTTGACA+AGG | 0.554851 | 1.3:+6986175 | MS.gene051549:CDS |
GACGAGGTTGAGGATGAAGA+TGG | 0.555563 | 1.3:+6987399 | MS.gene051549:CDS |
CAATCTTTGAAGTTGTTACA+GGG | 0.559430 | 1.3:+6986698 | MS.gene051549:CDS |
TTAATTAAAGCCCTCACCAC+CGG | 0.561302 | 1.3:+6983782 | MS.gene051549:CDS |
CGGAGCACCTACAACGTCCA+TGG | 0.562602 | 1.3:-6983702 | None:intergenic |
GCAAAGTTAATACCCAATGC+TGG | 0.563035 | 1.3:-6986065 | None:intergenic |
ATATGTGAGAAATGGTTTCA+CGG | 0.569510 | 1.3:+6987522 | MS.gene051549:CDS |
GGCAATGCAAATGCAGTCAA+AGG | 0.570005 | 1.3:+6987377 | MS.gene051549:CDS |
TGAGCTTCCAGAGCCAGCAT+TGG | 0.570153 | 1.3:+6986052 | MS.gene051549:CDS |
GAAGTCTTTAGAGATTTCAA+AGG | 0.577122 | 1.3:+6983746 | MS.gene051549:CDS |
GCTGGCTCTGGAAGCTCAGG+CGG | 0.581111 | 1.3:-6986047 | None:intergenic |
TGGATTTCCGAGTGAGCAGT+GGG | 0.586497 | 1.3:+6985998 | MS.gene051549:CDS |
AAGACTTCTTCGACAGTACG+AGG | 0.590790 | 1.3:-6983731 | None:intergenic |
GAGAAGACCGACCGGTGGTG+AGG | 0.592144 | 1.3:-6983793 | None:intergenic |
ATGGATTTCCGAGTGAGCAG+TGG | 0.594038 | 1.3:+6985997 | MS.gene051549:CDS |
TATTACCGGGATCACACTGC+TGG | 0.607631 | 1.3:-6983923 | None:intergenic |
GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1.3:+6987459 | MS.gene051549:CDS |
GCAAATGCAGTCAAAGGACG+AGG | 0.619066 | 1.3:+6987383 | MS.gene051549:CDS |
AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1.3:+6987451 | MS.gene051549:CDS |
GGATGAAGATGGTGTAGGTG+TGG | 0.626967 | 1.3:+6987410 | MS.gene051549:CDS |
AGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1.3:+6987416 | MS.gene051549:CDS |
GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1.3:+6987450 | MS.gene051549:CDS |
GGAGGTGAATCTGCCAGCTG+AGG | 0.634327 | 1.3:+6986019 | MS.gene051549:CDS |
GAGGAAGATGAGGAAGAACA+CGG | 0.666720 | 1.3:+6987435 | MS.gene051549:CDS |
GTTGAGGATGAAGATGGTGT+AGG | 0.671969 | 1.3:+6987405 | MS.gene051549:CDS |
AGACTTCTTCGACAGTACGA+GGG | 0.672863 | 1.3:-6983730 | None:intergenic |
GTCTGGCAGGAAACAAGGAA+AGG | 0.676618 | 1.3:+6986720 | MS.gene051549:CDS |
ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1.3:+6987452 | MS.gene051549:CDS |
ATTTCCGAGTGAGCAGTGGG+AGG | 0.722189 | 1.3:+6986001 | MS.gene051549:CDS |
AAAATGCGTGAAGATTACTC+CGG | 0.732353 | 1.3:+6987545 | MS.gene051549:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGTTAATTTTAATTATTTC+AGG | + | chr1.3:6985731-6985750 | MS.gene051549:intron | 10.0% |
!! | CTAATAGAAATAAATTATCT+AGG | + | chr1.3:6985458-6985477 | MS.gene051549:intron | 15.0% |
!!! | ATTTATTATTTGTTGTATGT+TGG | + | chr1.3:6985021-6985040 | MS.gene051549:intron | 15.0% |
!!! | CTAGATAATTTATTTCTATT+AGG | - | chr1.3:6985460-6985479 | None:intergenic | 15.0% |
!!! | GACATTTTTTATTTGAATTT+TGG | + | chr1.3:6986268-6986287 | MS.gene051549:intron | 15.0% |
!!! | TTTTTTATTTGAATTTTGGT+TGG | + | chr1.3:6986272-6986291 | MS.gene051549:intron | 15.0% |
!! | AAAATTGAAATGTTCGTTTA+TGG | + | chr1.3:6985496-6985515 | MS.gene051549:intron | 20.0% |
!! | ACATAATTCAGTGTAATTAT+AGG | + | chr1.3:6985143-6985162 | MS.gene051549:intron | 20.0% |
!! | ATGAAGTAAAATATAGTATG+TGG | + | chr1.3:6984703-6984722 | MS.gene051549:intron | 20.0% |
!! | ATTTGCATATGAATTACATT+TGG | + | chr1.3:6984575-6984594 | MS.gene051549:intron | 20.0% |
!! | GTAAAAGAATCTATAATAGT+TGG | + | chr1.3:6984517-6984536 | MS.gene051549:intron | 20.0% |
!! | TAAATAGAAGAAGACTATTT+AGG | + | chr1.3:6984852-6984871 | MS.gene051549:intron | 20.0% |
!! | TTTACGAAATAGAATATTAC+CGG | - | chr1.3:6983940-6983959 | None:intergenic | 20.0% |
!!! | GTATTTTCTCAAATTATTAG+CGG | - | chr1.3:6985125-6985144 | None:intergenic | 20.0% |
!!! | TGAAATTGAGTTACTTATTT+TGG | + | chr1.3:6985546-6985565 | MS.gene051549:intron | 20.0% |
!!! | TTGATTGTATTTTGCATTTT+TGG | + | chr1.3:6985923-6985942 | MS.gene051549:intron | 20.0% |
! | AAAATTATTGTCATAAGGTG+GGG | - | chr1.3:6985284-6985303 | None:intergenic | 25.0% |
! | AATCAAAATGCTACCATTTA+TGG | + | chr1.3:6984352-6984371 | MS.gene051549:intron | 25.0% |
! | ACTCTATATTACACTTCTTA+GGG | - | chr1.3:6984675-6984694 | None:intergenic | 25.0% |
! | ACTGTATGAAGAATTTAACT+TGG | + | chr1.3:6985594-6985613 | MS.gene051549:intron | 25.0% |
! | AGAAAATTATTGTCATAAGG+TGG | - | chr1.3:6985286-6985305 | None:intergenic | 25.0% |
! | ATCAAAATGCTACCATTTAT+GGG | + | chr1.3:6984353-6984372 | MS.gene051549:intron | 25.0% |
! | CAATTTCAACTATGAAACTT+AGG | - | chr1.3:6985903-6985922 | None:intergenic | 25.0% |
! | CATACATGTACAATGTATTA+AGG | + | chr1.3:6984762-6984781 | MS.gene051549:intron | 25.0% |
! | CTGGAAAGAAAAAAAAAACA+CGG | - | chr1.3:6983887-6983906 | None:intergenic | 25.0% |
! | CTTACTTTAGTGTATGATAT+TGG | + | chr1.3:6986394-6986413 | MS.gene051549:intron | 25.0% |
! | GAAAATTATTGTCATAAGGT+GGG | - | chr1.3:6985285-6985304 | None:intergenic | 25.0% |
! | GCAAGAAAATTATTGTCATA+AGG | - | chr1.3:6985289-6985308 | None:intergenic | 25.0% |
! | GTATGGTATTTAATCAGTTA+AGG | + | chr1.3:6987281-6987300 | MS.gene051549:intron | 25.0% |
! | GTCATTTAATCTTGATTGAA+AGG | - | chr1.3:6986971-6986990 | None:intergenic | 25.0% |
! | GTGTCTATTATTTACATACA+TGG | + | chr1.3:6984252-6984271 | MS.gene051549:intron | 25.0% |
! | TAAACATATATCCCTGTTTA+TGG | + | chr1.3:6987212-6987231 | MS.gene051549:intron | 25.0% |
! | TACTCTATATTACACTTCTT+AGG | - | chr1.3:6984676-6984695 | None:intergenic | 25.0% |
! | TGTAACTATAAGGGAAAATT+GGG | + | chr1.3:6984230-6984249 | MS.gene051549:intron | 25.0% |
! | TGTTGAATCAAAAGTGAAAA+AGG | + | chr1.3:6986878-6986897 | MS.gene051549:intron | 25.0% |
! | TTACGAAATAGAATATTACC+GGG | - | chr1.3:6983939-6983958 | None:intergenic | 25.0% |
! | TTCAATCACATTCAAAATTG+TGG | - | chr1.3:6984165-6984184 | None:intergenic | 25.0% |
! | TTTATAATTCGAGAACGTAT+CGG | + | chr1.3:6987174-6987193 | MS.gene051549:intron | 25.0% |
!! | CAGAAAAATAAAAGTTCTGA+AGG | - | chr1.3:6985857-6985876 | None:intergenic | 25.0% |
!! | CTGTATGAAGAATTTAACTT+GGG | + | chr1.3:6985595-6985614 | MS.gene051549:intron | 25.0% |
!! | TATCAACCAATCAAACATTT+TGG | - | chr1.3:6984472-6984491 | None:intergenic | 25.0% |
!!! | AAAATAAAAGTTCTGAAGGT+TGG | - | chr1.3:6985853-6985872 | None:intergenic | 25.0% |
!!! | AATTGAGTTACTTATTTTGG+TGG | + | chr1.3:6985549-6985568 | MS.gene051549:intron | 25.0% |
!!! | ATTGAGTTACTTATTTTGGT+GGG | + | chr1.3:6985550-6985569 | MS.gene051549:intron | 25.0% |
!!! | GCAAAACTTTATTTTTGTTC+AGG | + | chr1.3:6984898-6984917 | MS.gene051549:intron | 25.0% |
!!! | TAGTAGATTGTCTGTTATTT+TGG | + | chr1.3:6985763-6985782 | MS.gene051549:intron | 25.0% |
!!! | TGAAATTTTTGAGCAAATCA+AGG | - | chr1.3:6984987-6985006 | None:intergenic | 25.0% |
!!! | TGTATGAAGAATTTAACTTG+GGG | + | chr1.3:6985596-6985615 | MS.gene051549:intron | 25.0% |
!!! | TTTTTTTTGCCATTCATTGA+TGG | + | chr1.3:6986568-6986587 | MS.gene051549:intron | 25.0% |
AAAAGTGAAAAAGGACTTTG+AGG | + | chr1.3:6986887-6986906 | MS.gene051549:intron | 30.0% | |
AAAGTGAAAAAGGACTTTGA+GGG | + | chr1.3:6986888-6986907 | MS.gene051549:intron | 30.0% | |
AAGAAAAACAGTTACAGAAG+TGG | + | chr1.3:6984013-6984032 | MS.gene051549:intron | 30.0% | |
AAGACTAAATCCAGTATCAA+GGG | - | chr1.3:6985631-6985650 | None:intergenic | 30.0% | |
AAGGAAAATCTTTGCCTTTA+TGG | + | chr1.3:6985978-6985997 | MS.gene051549:CDS | 30.0% | |
AATGTATTAAGGTGAAACTC+GGG | + | chr1.3:6984773-6984792 | MS.gene051549:intron | 30.0% | |
AGAAAAACAGTTACAGAAGT+GGG | + | chr1.3:6984014-6984033 | MS.gene051549:intron | 30.0% | |
AGTATATTTCATAGCTCCAT+CGG | + | chr1.3:6985368-6985387 | MS.gene051549:intron | 30.0% | |
ATATGTGAGAAATGGTTTCA+CGG | + | chr1.3:6987522-6987541 | MS.gene051549:CDS | 30.0% | |
CAAATCCAAATCAAACTCTA+AGG | + | chr1.3:6986774-6986793 | MS.gene051549:CDS | 30.0% | |
CAATGTATTAAGGTGAAACT+CGG | + | chr1.3:6984772-6984791 | MS.gene051549:intron | 30.0% | |
CATATAAAGTCTATTGAGCA+GGG | - | chr1.3:6986249-6986268 | None:intergenic | 30.0% | |
CATATCGGAATATAAACTTG+AGG | - | chr1.3:6985397-6985416 | None:intergenic | 30.0% | |
CATTGTACATGTATGTAATG+CGG | - | chr1.3:6984757-6984776 | None:intergenic | 30.0% | |
CTATGAAACTTAGGCATATT+AGG | - | chr1.3:6985894-6985913 | None:intergenic | 30.0% | |
GATTAAATACCATACCAATC+AGG | - | chr1.3:6987276-6987295 | None:intergenic | 30.0% | |
GCATATGAATTACATTTGGT+GGG | + | chr1.3:6984579-6984598 | MS.gene051549:intron | 30.0% | |
GCTTGTACTATTGTTCATTT+AGG | + | chr1.3:6984285-6984304 | MS.gene051549:intron | 30.0% | |
GTAACAACTTCAAAGATTGT+TGG | - | chr1.3:6986697-6986716 | None:intergenic | 30.0% | |
GTGTAACTATAAGGGAAAAT+TGG | + | chr1.3:6984229-6984248 | MS.gene051549:intron | 30.0% | |
TAACAGACAATCTACTATCA+TGG | - | chr1.3:6985760-6985779 | None:intergenic | 30.0% | |
TCAATTCTAAGTCAAAGTTG+TGG | + | chr1.3:6984118-6984137 | MS.gene051549:intron | 30.0% | |
TCATATAAAGTCTATTGAGC+AGG | - | chr1.3:6986250-6986269 | None:intergenic | 30.0% | |
TGCATATGAATTACATTTGG+TGG | + | chr1.3:6984578-6984597 | MS.gene051549:intron | 30.0% | |
TGTTGCATGTGTAACTATAA+GGG | + | chr1.3:6984221-6984240 | MS.gene051549:intron | 30.0% | |
TTCAGTGTAATTATAGGTGT+CGG | + | chr1.3:6985149-6985168 | MS.gene051549:intron | 30.0% | |
! | CTTGAGGTTATCTATTTTCT+TGG | + | chr1.3:6985648-6985667 | MS.gene051549:intron | 30.0% |
! | GAAGTCTTTAGAGATTTCAA+AGG | + | chr1.3:6983746-6983765 | MS.gene051549:CDS | 30.0% |
! | TTTTGCTTGTCAAATAAGCA+TGG | - | chr1.3:6984884-6984903 | None:intergenic | 30.0% |
!! | AAAATTTCCACTGTTTCTGT+TGG | + | chr1.3:6984393-6984412 | MS.gene051549:intron | 30.0% |
!! | ACAATCTTTGAAGTTGTTAC+AGG | + | chr1.3:6986697-6986716 | MS.gene051549:CDS | 30.0% |
!! | CAATCTTTGAAGTTGTTACA+GGG | + | chr1.3:6986698-6986717 | MS.gene051549:CDS | 30.0% |
!! | CTTAGAGTTTGATTTGGATT+TGG | - | chr1.3:6986776-6986795 | None:intergenic | 30.0% |
!! | CTTTCTGTGGCTTTTTATTT+CGG | + | chr1.3:6986152-6986171 | MS.gene051549:CDS | 30.0% |
AAAAAAAAGAGAAGACCGAC+CGG | - | chr1.3:6983804-6983823 | None:intergenic | 35.0% | |
AAAATGCGTGAAGATTACTC+CGG | + | chr1.3:6987545-6987564 | MS.gene051549:CDS | 35.0% | |
AAAGTTACCAACAGAAACAG+TGG | - | chr1.3:6984403-6984422 | None:intergenic | 35.0% | |
AAATGACTCATGCTATGACT+TGG | + | chr1.3:6986984-6987003 | MS.gene051549:intron | 35.0% | |
ACTTTCTTGCTCCAAAAACA+AGG | - | chr1.3:6987152-6987171 | None:intergenic | 35.0% | |
AGCTTATACTCATCGTTCAA+GGG | - | chr1.3:6985796-6985815 | None:intergenic | 35.0% | |
ATACCATACCAATCAGGAAA+CGG | - | chr1.3:6987270-6987289 | None:intergenic | 35.0% | |
ATATGATGCGACATAACCTT+TGG | - | chr1.3:6985049-6985068 | None:intergenic | 35.0% | |
ATGGAATGCAAGAAAAGGAT+TGG | + | chr1.3:6986093-6986112 | MS.gene051549:CDS | 35.0% | |
ATTGAGATGCTTCCCATAAA+TGG | - | chr1.3:6984368-6984387 | None:intergenic | 35.0% | |
CAAGACTAAATCCAGTATCA+AGG | - | chr1.3:6985632-6985651 | None:intergenic | 35.0% | |
CCAAACACGTGATAAAAACA+AGG | - | chr1.3:6984090-6984109 | None:intergenic | 35.0% | |
CTATTAGTATCAGCGAATAG+TGG | - | chr1.3:6986825-6986844 | None:intergenic | 35.0% | |
GAAAGCAAACCATCAATGAA+TGG | - | chr1.3:6986580-6986599 | None:intergenic | 35.0% | |
GCTTACCTTAGAGTTTGATT+TGG | - | chr1.3:6986782-6986801 | None:intergenic | 35.0% | |
GGTATTAACTTTGCTAGAGA+TGG | + | chr1.3:6986074-6986093 | MS.gene051549:CDS | 35.0% | |
GGTTATGTCGCATCATATTT+AGG | + | chr1.3:6985051-6985070 | MS.gene051549:intron | 35.0% | |
GTGAGTCCAAAATGTTTGAT+TGG | + | chr1.3:6984463-6984482 | MS.gene051549:intron | 35.0% | |
GTGTTGCATGTGTAACTATA+AGG | + | chr1.3:6984220-6984239 | MS.gene051549:intron | 35.0% | |
TAGAGATGGAATGCAAGAAA+AGG | + | chr1.3:6986088-6986107 | MS.gene051549:CDS | 35.0% | |
TATAAACTTGAGGAATCCGA+TGG | - | chr1.3:6985387-6985406 | None:intergenic | 35.0% | |
TCACATGCAATGCAAAATTG+TGG | - | chr1.3:6984192-6984211 | None:intergenic | 35.0% | |
TCTCAAATTATTAGCGGTGT+TGG | - | chr1.3:6985119-6985138 | None:intergenic | 35.0% | |
TGCATTGCATGTGATTAATC+AGG | + | chr1.3:6984198-6984217 | MS.gene051549:intron | 35.0% | |
TGTAATGCGGCAACATATTA+TGG | - | chr1.3:6984744-6984763 | None:intergenic | 35.0% | |
TGTACTTAACATCTCTTTGC+AGG | + | chr1.3:6986641-6986660 | MS.gene051549:intron | 35.0% | |
TGTGTATGATTCTCTCTTTG+TGG | + | chr1.3:6984936-6984955 | MS.gene051549:intron | 35.0% | |
TGTTCAGGAAGTTCATTTCT+TGG | + | chr1.3:6984913-6984932 | MS.gene051549:intron | 35.0% | |
TTGCTCCAAAAACAAGGATT+CGG | - | chr1.3:6987146-6987165 | None:intergenic | 35.0% | |
TTGTTGTATGTTGGATCCAA+AGG | + | chr1.3:6985030-6985049 | MS.gene051549:intron | 35.0% | |
TTTATGGCTTCAGTAGATAG+TGG | + | chr1.3:6985512-6985531 | MS.gene051549:intron | 35.0% | |
! | AAAAAGGACTTTGAGGGATT+TGG | + | chr1.3:6986894-6986913 | MS.gene051549:intron | 35.0% |
! | AAGACACTCCTTTTACGAAA+AGG | - | chr1.3:6986474-6986493 | None:intergenic | 35.0% |
! | ACTCCTTTTACGAAAAGGAA+GGG | - | chr1.3:6986469-6986488 | None:intergenic | 35.0% |
! | GCCAAAGTTTTCAAAACCAA+TGG | + | chr1.3:6987350-6987369 | MS.gene051549:CDS | 35.0% |
! | GTTAAGGCTGTTATCTCTTT+TGG | + | chr1.3:6987297-6987316 | MS.gene051549:intron | 35.0% |
! | GTTTTCAAAACCAATGGCAA+TGG | + | chr1.3:6987356-6987375 | MS.gene051549:CDS | 35.0% |
! | TAATCTAGTTTGCATGACTG+TGG | + | chr1.3:6987090-6987109 | MS.gene051549:intron | 35.0% |
!! | AATTTCTAGCGCCATAAACA+GGG | - | chr1.3:6987226-6987245 | None:intergenic | 35.0% |
!! | AGAAAAGGATTGGCTATCTT+TGG | + | chr1.3:6986103-6986122 | MS.gene051549:CDS | 35.0% |
!! | AGGTTGGTTTCGAAGAAAAT+AGG | - | chr1.3:6985837-6985856 | None:intergenic | 35.0% |
!! | CAACAAACTTTTGAGAGGAA+GGG | - | chr1.3:6986531-6986550 | None:intergenic | 35.0% |
!! | GCTGATACTAATAGTTTGCT+AGG | + | chr1.3:6986831-6986850 | MS.gene051549:intron | 35.0% |
!! | TAATAGTTTGCTAGGTTCAG+CGG | + | chr1.3:6986839-6986858 | MS.gene051549:intron | 35.0% |
!! | TGATACTGGATTTAGTCTTG+AGG | + | chr1.3:6985632-6985651 | MS.gene051549:intron | 35.0% |
!! | TTTATGGGAAGCATCTCAAT+TGG | + | chr1.3:6984368-6984387 | MS.gene051549:intron | 35.0% |
!!! | AATTTTGGCTACGATACTTC+AGG | + | chr1.3:6985702-6985721 | MS.gene051549:intron | 35.0% |
!!! | CCTTGTTTTTATCACGTGTT+TGG | + | chr1.3:6984087-6984106 | MS.gene051549:intron | 35.0% |
!!! | GCCATTGGTTTTGAAAACTT+TGG | - | chr1.3:6987354-6987373 | None:intergenic | 35.0% |
!!! | TTTTATTTCGGTGCTAGGTT+TGG | + | chr1.3:6986164-6986183 | MS.gene051549:CDS | 35.0% |
AGCAGCAACAACAACAAGTA+CGG | - | chr1.3:6985247-6985266 | None:intergenic | 40.0% | |
ATTTGCATTGCCATTGCCAT+TGG | - | chr1.3:6987369-6987388 | None:intergenic | 40.0% | |
CAGCTTATACTCATCGTTCA+AGG | - | chr1.3:6985797-6985816 | None:intergenic | 40.0% | |
CCTTCCTCTCAAAAGTTTGT+TGG | + | chr1.3:6986529-6986548 | MS.gene051549:intron | 40.0% | |
CGAAAAGGAAGGGAACAATA+AGG | - | chr1.3:6986459-6986478 | None:intergenic | 40.0% | |
CTTATACTCATCGTTCAAGG+GGG | - | chr1.3:6985794-6985813 | None:intergenic | 40.0% | |
GAGAATTTCACCCTTGATAC+TGG | + | chr1.3:6985618-6985637 | MS.gene051549:intron | 40.0% | |
GCAAAGTTAATACCCAATGC+TGG | - | chr1.3:6986068-6986087 | None:intergenic | 40.0% | |
GCTTATACTCATCGTTCAAG+GGG | - | chr1.3:6985795-6985814 | None:intergenic | 40.0% | |
GTCAGTATACGTGCTTCATA+GGG | - | chr1.3:6985082-6985101 | None:intergenic | 40.0% | |
TCAATCTTATGCAACAGCTC+TGG | - | chr1.3:6985431-6985450 | None:intergenic | 40.0% | |
TGCTAGGTTTGGATTTGACA+AGG | + | chr1.3:6986175-6986194 | MS.gene051549:CDS | 40.0% | |
TGGTAGAATACATCGACATC+TGG | - | chr1.3:6983906-6983925 | None:intergenic | 40.0% | |
TGTCAGTATACGTGCTTCAT+AGG | - | chr1.3:6985083-6985102 | None:intergenic | 40.0% | |
TTAATTAAAGCCCTCACCAC+CGG | + | chr1.3:6983782-6983801 | MS.gene051549:CDS | 40.0% | |
TTGGATTTGACAAGGCTGAT+AGG | + | chr1.3:6986183-6986202 | MS.gene051549:CDS | 40.0% | |
! | ACTGCCAACAAACTTTTGAG+AGG | - | chr1.3:6986536-6986555 | None:intergenic | 40.0% |
! | CACTCCTTTTACGAAAAGGA+AGG | - | chr1.3:6986470-6986489 | None:intergenic | 40.0% |
! | CTGGAAGTATGCAAGCATAT+CGG | - | chr1.3:6985412-6985431 | None:intergenic | 40.0% |
! | GTTCCCTTCCTTTTCGTAAA+AGG | + | chr1.3:6986463-6986482 | MS.gene051549:intron | 40.0% |
! | TATGAAGCACGGACACTTTT+TGG | - | chr1.3:6985216-6985235 | None:intergenic | 40.0% |
! | TTTGAAGTTGTTACAGGGTC+TGG | + | chr1.3:6986703-6986722 | MS.gene051549:CDS | 40.0% |
!! | AAAAAGTGTCCGTGCTTCAT+AGG | + | chr1.3:6985215-6985234 | MS.gene051549:intron | 40.0% |
!! | AAAGTTTGTTGGCAGTGCTT+CGG | + | chr1.3:6986540-6986559 | MS.gene051549:intron | 40.0% |
!! | CCAACAAACTTTTGAGAGGA+AGG | - | chr1.3:6986532-6986551 | None:intergenic | 40.0% |
!! | GAATTTCTAGCGCCATAAAC+AGG | - | chr1.3:6987227-6987246 | None:intergenic | 40.0% |
!! | GATGGTTTGCTTTCTCAAGA+TGG | + | chr1.3:6986586-6986605 | MS.gene051549:intron | 40.0% |
!! | GTAATTATAGGTGTCGGTGT+CGG | + | chr1.3:6985155-6985174 | MS.gene051549:intron | 40.0% |
!!! | GAGATCCGAATCCTTGTTTT+TGG | + | chr1.3:6987138-6987157 | MS.gene051549:intron | 40.0% |
!!! | GGTTTTGAAAACTTTGGCTG+AGG | - | chr1.3:6987348-6987367 | None:intergenic | 40.0% |
!!! | TGGCTTTTTATTTCGGTGCT+AGG | + | chr1.3:6986159-6986178 | MS.gene051549:CDS | 40.0% |
AACACGGAGAGACTTTGTGT+GGG | + | chr1.3:6987451-6987470 | MS.gene051549:CDS | 45.0% | |
AACTGTGTCCGTTTCCTGAT+TGG | + | chr1.3:6987259-6987278 | MS.gene051549:intron | 45.0% | |
AAGACTTCTTCGACAGTACG+AGG | - | chr1.3:6983734-6983753 | None:intergenic | 45.0% | |
ACCATAGATATCCAGACTGC+AGG | - | chr1.3:6986924-6986943 | None:intergenic | 45.0% | |
AGACTTCTTCGACAGTACGA+GGG | - | chr1.3:6983733-6983752 | None:intergenic | 45.0% | |
ATGTGTGAATCCTTTGCTGC+AGG | + | chr1.3:6987116-6987135 | MS.gene051549:intron | 45.0% | |
CCATAGATATCCAGACTGCA+GGG | - | chr1.3:6986923-6986942 | None:intergenic | 45.0% | |
GAAAATAGGTAACGCAGCAC+AGG | - | chr1.3:6985823-6985842 | None:intergenic | 45.0% | |
GAGGAAGATGAGGAAGAACA+CGG | + | chr1.3:6987435-6987454 | MS.gene051549:CDS | 45.0% | |
GCAGCAACAACAACAAGTAC+GGG | - | chr1.3:6985246-6985265 | None:intergenic | 45.0% | |
GCTCACTCGGAAATCCATAA+AGG | - | chr1.3:6985995-6986014 | None:intergenic | 45.0% | |
GCTGCGACATATGTGAGAAA+TGG | + | chr1.3:6987514-6987533 | MS.gene051549:CDS | 45.0% | |
GGCAATGCAAATGCAGTCAA+AGG | + | chr1.3:6987377-6987396 | MS.gene051549:CDS | 45.0% | |
GTTGAGGATGAAGATGGTGT+AGG | + | chr1.3:6987405-6987424 | MS.gene051549:CDS | 45.0% | |
TGCTGTTGTTGCGTTTGTCA+TGG | + | chr1.3:6985306-6985325 | MS.gene051549:intron | 45.0% | |
TGTCCGTTTCCTGATTGGTA+TGG | + | chr1.3:6987264-6987283 | MS.gene051549:intron | 45.0% | |
TTGATATGCTCAGCTCTTGC+CGG | - | chr1.3:6987567-6987586 | None:intergenic | 45.0% | |
TTGCAGTACACAGTGATGCT+TGG | + | chr1.3:6986126-6986145 | MS.gene051549:CDS | 45.0% | |
TTTACCCTTTCACGAAGCTG+CGG | + | chr1.3:6986218-6986237 | MS.gene051549:intron | 45.0% | |
! | AGGCATATTAGGTGCTGCAT+TGG | - | chr1.3:6985883-6985902 | None:intergenic | 45.0% |
! | CGAGCTTTGTGATACAGAGA+AGG | + | chr1.3:6985959-6985978 | MS.gene051549:intron | 45.0% |
! | GGTGGTGAGGGCTTTAATTA+AGG | - | chr1.3:6983783-6983802 | None:intergenic | 45.0% |
! | TGATGCTTGGTTGCTTTCTG+TGG | + | chr1.3:6986139-6986158 | MS.gene051549:CDS | 45.0% |
!! | GCACGGACACTTTTTGGATT+AGG | - | chr1.3:6985210-6985229 | None:intergenic | 45.0% |
!! | TTAATACCCAATGCTGGCTC+TGG | - | chr1.3:6986062-6986081 | None:intergenic | 45.0% |
!! | TTTTTGGATTAGGCGTGTCC+CGG | - | chr1.3:6985200-6985219 | None:intergenic | 45.0% |
!! | AAAATTAAAATTAATTGAAA+AGG | - | chr1.3:6985688-6985707 | None:intergenic | 5.0% |
!!! | AATTTTTTTTACAAAAAAAT+AGG | - | chr1.3:6983848-6983867 | None:intergenic | 5.0% |
!!! | TTTTCAATTAATTTTAATTT+TGG | + | chr1.3:6985687-6985706 | MS.gene051549:intron | 5.0% |
!!! | TTTTTATATTTAATAATTGT+AGG | + | chr1.3:6984441-6984460 | MS.gene051549:intron | 5.0% |
AAAAAGAGAAGACCGACCGG+TGG | - | chr1.3:6983801-6983820 | None:intergenic | 50.0% | |
AAAGCCGCAGCTTCGTGAAA+GGG | - | chr1.3:6986225-6986244 | None:intergenic | 50.0% | |
AAGTTGTTACAGGGTCTGGC+AGG | + | chr1.3:6986707-6986726 | MS.gene051549:CDS | 50.0% | |
ACACGATACGTGTCTGACAC+CGG | + | chr1.3:6985178-6985197 | MS.gene051549:intron | 50.0% | |
ACACGGAGAGACTTTGTGTG+GGG | + | chr1.3:6987452-6987471 | MS.gene051549:CDS | 50.0% | |
ATGGATTTCCGAGTGAGCAG+TGG | + | chr1.3:6985997-6986016 | MS.gene051549:CDS | 50.0% | |
ATTCGGATCTCCTGCAGCAA+AGG | - | chr1.3:6987129-6987148 | None:intergenic | 50.0% | |
CCCTGCAGTCTGGATATCTA+TGG | + | chr1.3:6986920-6986939 | MS.gene051549:intron | 50.0% | |
GAACACGGAGAGACTTTGTG+TGG | + | chr1.3:6987450-6987469 | MS.gene051549:CDS | 50.0% | |
GACGAGGTTGAGGATGAAGA+TGG | + | chr1.3:6987399-6987418 | MS.gene051549:CDS | 50.0% | |
GATTTGGATTCCCTGCAGTC+TGG | + | chr1.3:6986910-6986929 | MS.gene051549:intron | 50.0% | |
GCAAATGCAGTCAAAGGACG+AGG | + | chr1.3:6987383-6987402 | MS.gene051549:CDS | 50.0% | |
GCACGTATACTGACACGACA+CGG | + | chr1.3:6985088-6985107 | MS.gene051549:intron | 50.0% | |
GCAGCTTCGTGAAAGGGTAA+AGG | - | chr1.3:6986219-6986238 | None:intergenic | 50.0% | |
GCTATGCAGCTGATGAGTTC+TGG | + | chr1.3:6987487-6987506 | MS.gene051549:CDS | 50.0% | |
GGATGAAGATGGTGTAGGTG+TGG | + | chr1.3:6987410-6987429 | MS.gene051549:CDS | 50.0% | |
GGTGGGTCATAACAAGAAGC+TGG | + | chr1.3:6984596-6984615 | MS.gene051549:intron | 50.0% | |
GTCTGGCAGGAAACAAGGAA+AGG | + | chr1.3:6986720-6986739 | MS.gene051549:CDS | 50.0% | |
TATTACCGGGATCACACTGC+TGG | - | chr1.3:6983926-6983945 | None:intergenic | 50.0% | |
TCGACAGTACGAGGGTTGTA+CGG | - | chr1.3:6983725-6983744 | None:intergenic | 50.0% | |
TGGATTTCCGAGTGAGCAGT+GGG | + | chr1.3:6985998-6986017 | MS.gene051549:CDS | 50.0% | |
TTCTACCAGCAGTGTGATCC+CGG | + | chr1.3:6983918-6983937 | MS.gene051549:CDS | 50.0% | |
! | AGAAAGTGCGTTGTCTCGTC+TGG | + | chr1.3:6987029-6987048 | MS.gene051549:intron | 50.0% |
! | CGGGTTGAACCTATGAAGCA+CGG | - | chr1.3:6985227-6985246 | None:intergenic | 50.0% |
ACAGGGTCTGGCAGGAAACA+AGG | + | chr1.3:6986715-6986734 | MS.gene051549:CDS | 55.0% | |
AGATGGTGTAGGTGTGGACG+AGG | + | chr1.3:6987416-6987435 | MS.gene051549:CDS | 55.0% | |
AGGTGTGGACGAGGAAGATG+AGG | + | chr1.3:6987425-6987444 | MS.gene051549:CDS | 55.0% | |
ATTTCCGAGTGAGCAGTGGG+AGG | + | chr1.3:6986001-6986020 | MS.gene051549:CDS | 55.0% | |
CAAAGCCGCAGCTTCGTGAA+AGG | - | chr1.3:6986226-6986245 | None:intergenic | 55.0% | |
CACGATACGTGTCTGACACC+GGG | + | chr1.3:6985179-6985198 | MS.gene051549:intron | 55.0% | |
GAGACTTTGTGTGGGGCATG+TGG | + | chr1.3:6987459-6987478 | MS.gene051549:CDS | 55.0% | |
GAGCTTCCAGAGCCAGCATT+GGG | + | chr1.3:6986053-6986072 | MS.gene051549:CDS | 55.0% | |
GCAGTCAAAGGACGAGGTTG+AGG | + | chr1.3:6987389-6987408 | MS.gene051549:CDS | 55.0% | |
GCTCTCTTGTTGCTGCAAGC+TGG | - | chr1.3:6987603-6987622 | None:intergenic | 55.0% | |
TGAGCTTCCAGAGCCAGCAT+TGG | + | chr1.3:6986052-6986071 | MS.gene051549:CDS | 55.0% | |
TTAAAGCCCTCACCACCGGT+CGG | + | chr1.3:6983786-6983805 | MS.gene051549:intron | 55.0% | |
TTCACCTCCCACTGCTCACT+CGG | - | chr1.3:6986008-6986027 | None:intergenic | 55.0% | |
!! | AATGCTGGCTCTGGAAGCTC+AGG | - | chr1.3:6986053-6986072 | None:intergenic | 55.0% |
AGAAGACCGACCGGTGGTGA+GGG | - | chr1.3:6983795-6983814 | None:intergenic | 60.0% | |
GGAGGTGAATCTGCCAGCTG+AGG | + | chr1.3:6986019-6986038 | MS.gene051549:CDS | 60.0% | |
GAGAAGACCGACCGGTGGTG+AGG | - | chr1.3:6983796-6983815 | None:intergenic | 65.0% | |
TCAGGCGGCACTTCCTCAGC+TGG | - | chr1.3:6986035-6986054 | None:intergenic | 65.0% | |
!! | GCTGGCTCTGGAAGCTCAGG+CGG | - | chr1.3:6986050-6986069 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 6983704 | 6987632 | 6983704 | ID=MS.gene051549 |
chr1.3 | mRNA | 6983704 | 6987632 | 6983704 | ID=MS.gene051549.t1;Parent=MS.gene051549 |
chr1.3 | exon | 6983704 | 6983803 | 6983704 | ID=MS.gene051549.t1.exon1;Parent=MS.gene051549.t1 |
chr1.3 | CDS | 6983704 | 6983803 | 6983704 | ID=cds.MS.gene051549.t1;Parent=MS.gene051549.t1 |
chr1.3 | exon | 6983907 | 6983939 | 6983907 | ID=MS.gene051549.t1.exon2;Parent=MS.gene051549.t1 |
chr1.3 | CDS | 6983907 | 6983939 | 6983907 | ID=cds.MS.gene051549.t1;Parent=MS.gene051549.t1 |
chr1.3 | exon | 6985976 | 6986204 | 6985976 | ID=MS.gene051549.t1.exon3;Parent=MS.gene051549.t1 |
chr1.3 | CDS | 6985976 | 6986204 | 6985976 | ID=cds.MS.gene051549.t1;Parent=MS.gene051549.t1 |
chr1.3 | exon | 6986663 | 6986795 | 6986663 | ID=MS.gene051549.t1.exon4;Parent=MS.gene051549.t1 |
chr1.3 | CDS | 6986663 | 6986795 | 6986663 | ID=cds.MS.gene051549.t1;Parent=MS.gene051549.t1 |
chr1.3 | exon | 6987333 | 6987632 | 6987333 | ID=MS.gene051549.t1.exon5;Parent=MS.gene051549.t1 |
chr1.3 | CDS | 6987333 | 6987632 | 6987333 | ID=cds.MS.gene051549.t1;Parent=MS.gene051549.t1 |
Gene Sequence |
Protein sequence |