Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051607.t1 | TMW94883.1 | 59.7 | 62 | 22 | 1 | 30 | 88 | 21 | 82 | 3.20E-10 | 74.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051607.t1 | Q6YW48 | 81.8 | 33 | 6 | 0 | 29 | 61 | 177 | 209 | 5.5e-11 | 68.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051607.t1 | A0A0V0HCG4 | 59.7 | 62 | 22 | 1 | 30 | 88 | 21 | 82 | 3.9e-10 | 73.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene051607.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051607.t1 | MTR_1g016170 | 70.000 | 50 | 12 | 1 | 26 | 72 | 185 | 234 | 1.05e-18 | 78.2 |
MS.gene051607.t1 | MTR_1g016200 | 58.065 | 62 | 23 | 1 | 11 | 72 | 46 | 104 | 9.63e-18 | 71.6 |
MS.gene051607.t1 | MTR_7g112330 | 48.276 | 58 | 30 | 0 | 29 | 86 | 23 | 80 | 3.37e-16 | 68.6 |
MS.gene051607.t1 | MTR_4g121110 | 60.784 | 51 | 15 | 2 | 30 | 80 | 32 | 77 | 8.27e-14 | 62.8 |
MS.gene051607.t1 | MTR_2g038720 | 81.250 | 32 | 6 | 0 | 26 | 57 | 162 | 193 | 1.55e-13 | 64.3 |
MS.gene051607.t1 | MTR_4g126350 | 81.818 | 33 | 6 | 0 | 25 | 57 | 183 | 215 | 8.05e-13 | 62.4 |
MS.gene051607.t1 | MTR_5g020230 | 63.636 | 33 | 12 | 0 | 30 | 62 | 124 | 156 | 2.37e-11 | 57.8 |
MS.gene051607.t1 | MTR_1g094930 | 67.742 | 31 | 10 | 0 | 30 | 60 | 149 | 179 | 7.01e-11 | 56.2 |
MS.gene051607.t1 | MTR_8g077510 | 60.606 | 33 | 13 | 0 | 30 | 62 | 127 | 159 | 9.37e-11 | 56.2 |
MS.gene051607.t1 | MTR_1g094930 | 67.742 | 31 | 10 | 0 | 30 | 60 | 244 | 274 | 9.47e-11 | 56.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051607.t1 | AT5G56860 | 81.818 | 33 | 6 | 0 | 29 | 61 | 231 | 263 | 5.26e-15 | 68.6 |
MS.gene051607.t1 | AT3G16870 | 51.613 | 62 | 29 | 1 | 26 | 87 | 40 | 100 | 1.00e-14 | 65.9 |
MS.gene051607.t1 | AT5G49300 | 48.333 | 60 | 26 | 1 | 8 | 62 | 11 | 70 | 1.41e-14 | 64.7 |
MS.gene051607.t1 | AT5G26930 | 69.697 | 33 | 10 | 0 | 30 | 62 | 28 | 60 | 2.29e-13 | 60.8 |
MS.gene051607.t1 | AT4G26150 | 80.645 | 31 | 6 | 0 | 29 | 59 | 200 | 230 | 2.61e-13 | 63.9 |
MS.gene051607.t1 | AT4G16141 | 65.854 | 41 | 13 | 1 | 30 | 70 | 39 | 78 | 7.35e-13 | 61.2 |
MS.gene051607.t1 | AT3G06740 | 69.697 | 33 | 10 | 0 | 30 | 62 | 43 | 75 | 2.07e-12 | 59.3 |
MS.gene051607.t1 | AT4G36620 | 57.895 | 38 | 16 | 0 | 30 | 67 | 77 | 114 | 4.50e-12 | 59.3 |
MS.gene051607.t1 | AT2G18380 | 59.459 | 37 | 15 | 0 | 30 | 66 | 94 | 130 | 6.72e-12 | 58.9 |
MS.gene051607.t1 | AT3G50870 | 63.636 | 33 | 12 | 0 | 30 | 62 | 154 | 186 | 2.90e-11 | 57.8 |
MS.gene051607.t1 | AT1G08010 | 70.968 | 31 | 9 | 0 | 30 | 60 | 222 | 252 | 8.71e-11 | 56.6 |
MS.gene051607.t1 | AT1G08010 | 70.968 | 31 | 9 | 0 | 30 | 60 | 222 | 252 | 8.71e-11 | 56.6 |
MS.gene051607.t1 | AT1G08010 | 70.968 | 31 | 9 | 0 | 30 | 60 | 222 | 252 | 8.71e-11 | 56.6 |
MS.gene051607.t1 | AT3G54810 | 67.742 | 31 | 10 | 0 | 30 | 60 | 231 | 261 | 8.93e-11 | 56.6 |
MS.gene051607.t1 | AT3G54810 | 67.742 | 31 | 10 | 0 | 30 | 60 | 231 | 261 | 8.93e-11 | 56.6 |
Find 28 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTCTAGCCTTTGGATATC+TGG | 0.254611 | 1.3:-6054217 | None:intergenic |
GTGTTAAATACTCTAGCCTT+TGG | 0.384107 | 1.3:-6054225 | None:intergenic |
GGCAAAAGCTGCTAAAGGTT+TGG | 0.385602 | 1.3:+6055899 | MS.gene051607:CDS |
CCTTTGGAGGAGTGGACCTA+TGG | 0.393594 | 1.3:+6054305 | MS.gene051607:CDS |
CCTTAAACGGAGAAGGAAAA+TGG | 0.403851 | 1.3:+6055878 | MS.gene051607:CDS |
GCAACGCATGTGGCCTTAAA+CGG | 0.433689 | 1.3:+6055865 | MS.gene051607:CDS |
TTTGGATACTCACAAGGAAA+AGG | 0.463252 | 1.3:+6055917 | MS.gene051607:CDS |
ACTCCTCCAAAGGGGAGTCT+TGG | 0.473678 | 1.3:-6054295 | None:intergenic |
ACAATCTGAGCAAACTATAG+TGG | 0.494689 | 1.3:-6054265 | None:intergenic |
CTTTGGAGGAGTGGACCTAT+GGG | 0.500407 | 1.3:+6054306 | MS.gene051607:CDS |
AGTGGTTGTAGCAGCTAGAA+TGG | 0.504787 | 1.3:-6054247 | None:intergenic |
CAACCAAGACTCCCCTTTGG+AGG | 0.510410 | 1.3:+6054292 | MS.gene051607:CDS |
AGACAACCAAGACTCCCCTT+TGG | 0.517499 | 1.3:+6054289 | MS.gene051607:CDS |
TTGGATACTCACAAGGAAAA+GGG | 0.521424 | 1.3:+6055918 | MS.gene051607:CDS |
CATAGGTCCACTCCTCCAAA+GGG | 0.525622 | 1.3:-6054304 | None:intergenic |
GAGTGGACCTATGGGTCCTA+AGG | 0.528357 | 1.3:+6054314 | MS.gene051607:CDS |
CCATAGGTCCACTCCTCCAA+AGG | 0.542869 | 1.3:-6054305 | None:intergenic |
AAGACTCCCCTTTGGAGGAG+TGG | 0.565345 | 1.3:+6054297 | MS.gene051607:CDS |
CTAATTACCTTAGGACCCAT+AGG | 0.580046 | 1.3:-6054321 | None:intergenic |
AAAATGGCAAAAGCTGCTAA+AGG | 0.591042 | 1.3:+6055894 | MS.gene051607:CDS |
CATGTGGCCTTAAACGGAGA+AGG | 0.606403 | 1.3:+6055871 | MS.gene051607:CDS |
TGGCGAAAGCTCATCATCTG+AGG | 0.622295 | 1.3:+6055944 | MS.gene051607:CDS |
ACTCACAAGGAAAAGGGCAA+TGG | 0.626006 | 1.3:+6055924 | MS.gene051607:CDS |
TAAAGGTTTGGATACTCACA+AGG | 0.633174 | 1.3:+6055911 | MS.gene051607:CDS |
CAGTCGTTGTGCAACGCATG+TGG | 0.634101 | 1.3:+6055855 | MS.gene051607:intron |
TCTAGCCTTTGGATATCTGG+TGG | 0.655060 | 1.3:-6054214 | None:intergenic |
TGTCACCACCAGATATCCAA+AGG | 0.673775 | 1.3:+6054209 | MS.gene051607:CDS |
ATAGGTCCACTCCTCCAAAG+GGG | 0.735481 | 1.3:-6054303 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAACAAAAATTAAAACA+TGG | - | chr1.3:6054594-6054613 | None:intergenic | 10.0% |
!! | AAAATATTTATAAACAATGT+AGG | + | chr1.3:6055272-6055291 | MS.gene051607:intron | 10.0% |
!! | ATAATCAAAATTAAATTAGA+TGG | + | chr1.3:6055397-6055416 | MS.gene051607:intron | 10.0% |
!! | GAAAAAATATATGAAAAAAA+TGG | - | chr1.3:6054656-6054675 | None:intergenic | 10.0% |
!! | TTTGTGTTCTATTTATAAAA+TGG | + | chr1.3:6054622-6054641 | MS.gene051607:intron | 15.0% |
!!! | ATAAATGTAATAGATGTTTT+AGG | - | chr1.3:6054832-6054851 | None:intergenic | 15.0% |
!!! | GTAACAATAATTTTGAATTA+GGG | - | chr1.3:6054401-6054420 | None:intergenic | 15.0% |
!!! | TAACAATAATTTTGAATTAG+GGG | - | chr1.3:6054400-6054419 | None:intergenic | 15.0% |
!!! | TGTAACAATAATTTTGAATT+AGG | - | chr1.3:6054402-6054421 | None:intergenic | 15.0% |
!!! | TGTTTTTTTAAATTCAAGAA+AGG | - | chr1.3:6054745-6054764 | None:intergenic | 15.0% |
!!! | TTAATTTTGATTATGAAAGA+AGG | - | chr1.3:6055391-6055410 | None:intergenic | 15.0% |
!!! | TTAGATGGATTTTTTTTTTA+CGG | + | chr1.3:6055412-6055431 | MS.gene051607:intron | 15.0% |
!! | CAGAGAAAATTGAAAAAAAA+TGG | - | chr1.3:6054461-6054480 | None:intergenic | 20.0% |
!!! | AAATATTTTTTTCCTGTTCT+TGG | + | chr1.3:6054550-6054569 | MS.gene051607:intron | 20.0% |
!!! | AACAATAATTTTGAATTAGG+GGG | - | chr1.3:6054399-6054418 | None:intergenic | 20.0% |
!!! | AATGGTATCAATAATTTTGA+AGG | + | chr1.3:6055669-6055688 | MS.gene051607:intron | 20.0% |
!!! | ATATCAATTTTTTTGGTGAT+AGG | + | chr1.3:6055702-6055721 | MS.gene051607:intron | 20.0% |
!!! | ATATCAATTTTTTTGGTGAT+AGG | - | chr1.3:6055721-6055702 | None:intergenic | 20.0% |
!!! | ATGTTCCATATTTTTTTTTG+AGG | - | chr1.3:6055493-6055512 | None:intergenic | 20.0% |
!!! | TATCAATTTTTTTGGTGATA+GGG | + | chr1.3:6055703-6055722 | MS.gene051607:intron | 20.0% |
!!! | TATCAATTTTTTTGGTGATA+GGG | - | chr1.3:6055722-6055703 | None:intergenic | 20.0% |
!!! | TGTTCCATATTTTTTTTTGA+GGG | - | chr1.3:6055492-6055511 | None:intergenic | 20.0% |
!!! | TTTCATTGTTTTTTTGATTG+CGG | + | chr1.3:6054672-6054691 | MS.gene051607:intron | 20.0% |
!!! | TTTTTTAAATTCAAGAAAGG+TGG | - | chr1.3:6054742-6054761 | None:intergenic | 20.0% |
! | AAATCCTAACTAATTACCTT+AGG | - | chr1.3:6054333-6054352 | None:intergenic | 25.0% |
! | ATACTTAACATGAAACATGT+TGG | + | chr1.3:6055830-6055849 | MS.gene051607:intron | 25.0% |
! | CCAAATTAAAAAGAGAACAA+GGG | - | chr1.3:6054429-6054448 | None:intergenic | 25.0% |
! | GAAAAATCATCGAGAAAATA+TGG | + | chr1.3:6055088-6055107 | MS.gene051607:intron | 25.0% |
! | GGAATTAGATAGACTTAAAA+TGG | + | chr1.3:6055433-6055452 | MS.gene051607:intron | 25.0% |
! | TACTGTTTCATTTACTATCA+CGG | + | chr1.3:6055781-6055800 | MS.gene051607:intron | 25.0% |
! | TGTAAACACAACTGATATAA+GGG | - | chr1.3:6054906-6054925 | None:intergenic | 25.0% |
! | TTGTAAACACAACTGATATA+AGG | - | chr1.3:6054907-6054926 | None:intergenic | 25.0% |
!!! | ATCAATTTTTTTGGTGATAG+GGG | + | chr1.3:6055704-6055723 | MS.gene051607:intron | 25.0% |
!!! | ATCAATTTTTTTGGTGATAG+GGG | - | chr1.3:6055723-6055704 | None:intergenic | 25.0% |
!!! | GTATCAATAATTTTGAAGGA+GGG | + | chr1.3:6055673-6055692 | MS.gene051607:intron | 25.0% |
!!! | TATCAATAATTTTGAAGGAG+GGG | + | chr1.3:6055674-6055693 | MS.gene051607:intron | 25.0% |
AACTACTGATGATTTACAGT+TGG | - | chr1.3:6055151-6055170 | None:intergenic | 30.0% | |
GCCAAATTAAAAAGAGAACA+AGG | - | chr1.3:6054430-6054449 | None:intergenic | 30.0% | |
GCTATGTTCCATATTTCAAA+TGG | - | chr1.3:6055467-6055486 | None:intergenic | 30.0% | |
GCTTCCCTCAAAAAAAAATA+TGG | + | chr1.3:6055485-6055504 | MS.gene051607:intron | 30.0% | |
TAGTCCAAAACAAGAGTTAT+TGG | + | chr1.3:6054964-6054983 | MS.gene051607:intron | 30.0% | |
! | GGCTTTTCAAAACTTTTTGT+AGG | + | chr1.3:6054491-6054510 | MS.gene051607:intron | 30.0% |
!! | CCCTTGTTCTCTTTTTAATT+TGG | + | chr1.3:6054426-6054445 | MS.gene051607:intron | 30.0% |
!! | GGTATCAATAATTTTGAAGG+AGG | + | chr1.3:6055672-6055691 | MS.gene051607:intron | 30.0% |
!! | TTTCAATTTTCTCTGAAAGC+TGG | + | chr1.3:6054466-6054485 | MS.gene051607:intron | 30.0% |
!!! | GGCAGACATATCAATTTTTT+TGG | + | chr1.3:6055695-6055714 | MS.gene051607:intron | 30.0% |
!!! | GGCAGACATATCAATTTTTT+TGG | - | chr1.3:6055714-6055695 | None:intergenic | 30.0% |
AAAATGGCAAAAGCTGCTAA+AGG | + | chr1.3:6055894-6055913 | MS.gene051607:CDS | 35.0% | |
AATTGTTCAGAAGTTCAGAG+AGG | + | chr1.3:6055597-6055616 | MS.gene051607:intron | 35.0% | |
ACAATCTGAGCAAACTATAG+TGG | - | chr1.3:6054268-6054287 | None:intergenic | 35.0% | |
ACAATTCATGCGAATATGAC+CGG | - | chr1.3:6055128-6055147 | None:intergenic | 35.0% | |
ACATAGATATGCTCGTCAAT+TGG | + | chr1.3:6055509-6055528 | MS.gene051607:intron | 35.0% | |
ACCATGCGAAGATTAAAGAA+AGG | + | chr1.3:6055022-6055041 | MS.gene051607:intron | 35.0% | |
ACCTTTCTTTAATCTTCGCA+TGG | - | chr1.3:6055026-6055045 | None:intergenic | 35.0% | |
ATGATGAAAACTAGAACACG+CGG | - | chr1.3:6054873-6054892 | None:intergenic | 35.0% | |
CCAATCTAAATGTAGAACAG+GGG | + | chr1.3:6055645-6055664 | MS.gene051607:intron | 35.0% | |
CTTGACTGAAATGAATGTTG+TGG | + | chr1.3:6055066-6055085 | MS.gene051607:intron | 35.0% | |
GAAACAGTAGCGAATAAGTT+GGG | - | chr1.3:6055770-6055789 | None:intergenic | 35.0% | |
GAACACGCGGATATAAAATT+AGG | - | chr1.3:6054860-6054879 | None:intergenic | 35.0% | |
GCCAATCTAAATGTAGAACA+GGG | + | chr1.3:6055644-6055663 | MS.gene051607:intron | 35.0% | |
TAAAGGTTTGGATACTCACA+AGG | + | chr1.3:6055911-6055930 | MS.gene051607:CDS | 35.0% | |
TGAAACAGTAGCGAATAAGT+TGG | - | chr1.3:6055771-6055790 | None:intergenic | 35.0% | |
TGAGTGTTCCACAATTAAGT+TGG | - | chr1.3:6055576-6055595 | None:intergenic | 35.0% | |
TGTAGGTTCTGCATATGAAA+TGG | + | chr1.3:6054508-6054527 | MS.gene051607:intron | 35.0% | |
TTCCTGTTCTTGGTTTCAAA+TGG | + | chr1.3:6054560-6054579 | MS.gene051607:intron | 35.0% | |
TTCTTTAATCTTCGCATGGT+TGG | - | chr1.3:6055022-6055041 | None:intergenic | 35.0% | |
TTGGATACTCACAAGGAAAA+GGG | + | chr1.3:6055918-6055937 | MS.gene051607:CDS | 35.0% | |
TTTGGATACTCACAAGGAAA+AGG | + | chr1.3:6055917-6055936 | MS.gene051607:CDS | 35.0% | |
! | CAAGCTTGCCATTTGAAATA+TGG | + | chr1.3:6055456-6055475 | MS.gene051607:intron | 35.0% |
! | GTGTTAAATACTCTAGCCTT+TGG | - | chr1.3:6054228-6054247 | None:intergenic | 35.0% |
CCCCTGTTCTACATTTAGAT+TGG | - | chr1.3:6055648-6055667 | None:intergenic | 40.0% | |
CCTTAAACGGAGAAGGAAAA+TGG | + | chr1.3:6055878-6055897 | MS.gene051607:CDS | 40.0% | |
CGCCAATCTAAATGTAGAAC+AGG | + | chr1.3:6055643-6055662 | MS.gene051607:intron | 40.0% | |
CTAATTACCTTAGGACCCAT+AGG | - | chr1.3:6054324-6054343 | None:intergenic | 40.0% | |
GGGTCCTAAGGTAATTAGTT+AGG | + | chr1.3:6054326-6054345 | MS.gene051607:intron | 40.0% | |
TAAATGTAGAACAGGGGCAA+TGG | + | chr1.3:6055651-6055670 | MS.gene051607:intron | 40.0% | |
! | CCATTTTCCTTCTCCGTTTA+AGG | - | chr1.3:6055881-6055900 | None:intergenic | 40.0% |
! | GTCAAGATGCGAGTATTGTT+TGG | - | chr1.3:6055052-6055071 | None:intergenic | 40.0% |
! | TACTCTAGCCTTTGGATATC+TGG | - | chr1.3:6054220-6054239 | None:intergenic | 40.0% |
! | TATGGACTATGTTCCAAGAC+CGG | + | chr1.3:6055106-6055125 | MS.gene051607:intron | 40.0% |
!! | AAAGCTTTGGATCTTCATGC+GGG | - | chr1.3:6054991-6055010 | None:intergenic | 40.0% |
!! | AATTTTCTCTGAAAGCTGGC+AGG | + | chr1.3:6054470-6054489 | MS.gene051607:intron | 40.0% |
!! | CAAAGCTTTGGATCTTCATG+CGG | - | chr1.3:6054992-6055011 | None:intergenic | 40.0% |
ACTCACAAGGAAAAGGGCAA+TGG | + | chr1.3:6055924-6055943 | MS.gene051607:CDS | 45.0% | |
ACTGCTCGCCAACTTAATTG+TGG | + | chr1.3:6055565-6055584 | MS.gene051607:intron | 45.0% | |
AGTGGTTGTAGCAGCTAGAA+TGG | - | chr1.3:6054250-6054269 | None:intergenic | 45.0% | |
ATCTTCGCATGGTTGGATCA+TGG | - | chr1.3:6055015-6055034 | None:intergenic | 45.0% | |
GGCAAAAGCTGCTAAAGGTT+TGG | + | chr1.3:6055899-6055918 | MS.gene051607:CDS | 45.0% | |
GTTGGATCATGGCAAAGCTT+TGG | - | chr1.3:6055004-6055023 | None:intergenic | 45.0% | |
TGTCACCACCAGATATCCAA+AGG | + | chr1.3:6054209-6054228 | MS.gene051607:CDS | 45.0% | |
! | CGCCATTTGAAACCAAGAAC+AGG | - | chr1.3:6054565-6054584 | None:intergenic | 45.0% |
! | TCTAGCCTTTGGATATCTGG+TGG | - | chr1.3:6054217-6054236 | None:intergenic | 45.0% |
!! | AAGCTTTGGATCTTCATGCG+GGG | - | chr1.3:6054990-6055009 | None:intergenic | 45.0% |
!! | GGGGCCAATAACTCTTGTTT+TGG | - | chr1.3:6054971-6054990 | None:intergenic | 45.0% |
!! | TTTAATAAAAAAATTACTTT+AGG | - | chr1.3:6054769-6054788 | None:intergenic | 5.0% |
AGACAACCAAGACTCCCCTT+TGG | + | chr1.3:6054289-6054308 | MS.gene051607:CDS | 50.0% | |
ATAGGTCCACTCCTCCAAAG+GGG | - | chr1.3:6054306-6054325 | None:intergenic | 50.0% | |
CATAGGTCCACTCCTCCAAA+GGG | - | chr1.3:6054307-6054326 | None:intergenic | 50.0% | |
CATGCGAATATGACCGGTCT+TGG | - | chr1.3:6055122-6055141 | None:intergenic | 50.0% | |
TGGCGAAAGCTCATCATCTG+AGG | + | chr1.3:6055944-6055963 | MS.gene051607:CDS | 50.0% | |
! | CATGTGGCCTTAAACGGAGA+AGG | + | chr1.3:6055871-6055890 | MS.gene051607:CDS | 50.0% |
! | CTTTGGAGGAGTGGACCTAT+GGG | + | chr1.3:6054306-6054325 | MS.gene051607:CDS | 50.0% |
! | GCAACGCATGTGGCCTTAAA+CGG | + | chr1.3:6055865-6055884 | MS.gene051607:CDS | 50.0% |
ACTCCTCCAAAGGGGAGTCT+TGG | - | chr1.3:6054298-6054317 | None:intergenic | 55.0% | |
CAACCAAGACTCCCCTTTGG+AGG | + | chr1.3:6054292-6054311 | MS.gene051607:CDS | 55.0% | |
CAGTCGTTGTGCAACGCATG+TGG | + | chr1.3:6055855-6055874 | MS.gene051607:intron | 55.0% | |
CCATAGGTCCACTCCTCCAA+AGG | - | chr1.3:6054308-6054327 | None:intergenic | 55.0% | |
GAGTGGACCTATGGGTCCTA+AGG | + | chr1.3:6054314-6054333 | MS.gene051607:CDS | 55.0% | |
! | AAGACTCCCCTTTGGAGGAG+TGG | + | chr1.3:6054297-6054316 | MS.gene051607:CDS | 55.0% |
! | CCTTTGGAGGAGTGGACCTA+TGG | + | chr1.3:6054305-6054324 | MS.gene051607:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 6054189 | 6055983 | 6054189 | ID=MS.gene051607 |
chr1.3 | mRNA | 6054189 | 6055983 | 6054189 | ID=MS.gene051607.t1;Parent=MS.gene051607 |
chr1.3 | exon | 6054189 | 6054335 | 6054189 | ID=MS.gene051607.t1.exon1;Parent=MS.gene051607.t1 |
chr1.3 | CDS | 6054189 | 6054335 | 6054189 | ID=cds.MS.gene051607.t1;Parent=MS.gene051607.t1 |
chr1.3 | exon | 6055858 | 6055983 | 6055858 | ID=MS.gene051607.t1.exon2;Parent=MS.gene051607.t1 |
chr1.3 | CDS | 6055858 | 6055983 | 6055858 | ID=cds.MS.gene051607.t1;Parent=MS.gene051607.t1 |
Gene Sequence |
Protein sequence |