Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051729.t1 | AES79083.2 | 86.1 | 732 | 88 | 4 | 1 | 718 | 1 | 732 | 0.00E+00 | 1182.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051729.t1 | Q9ZSM8 | 38.8 | 833 | 362 | 16 | 24 | 718 | 32 | 854 | 6.1e-145 | 516.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051729.t1 | G7L054 | 86.1 | 732 | 88 | 4 | 1 | 718 | 1 | 732 | 0.0e+00 | 1182.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene051729.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051729.t1 | MTR_7g055660 | 90.574 | 732 | 55 | 4 | 1 | 718 | 1 | 732 | 0.0 | 1355 |
MS.gene051729.t1 | MTR_7g109560 | 50.970 | 722 | 308 | 13 | 14 | 716 | 66 | 760 | 0.0 | 664 |
MS.gene051729.t1 | MTR_1g086980 | 56.174 | 413 | 166 | 6 | 316 | 718 | 222 | 629 | 4.89e-154 | 461 |
MS.gene051729.t1 | MTR_1g086980 | 48.734 | 158 | 75 | 2 | 182 | 333 | 1 | 158 | 3.98e-40 | 157 |
MS.gene051729.t1 | MTR_1g086980 | 56.174 | 413 | 166 | 6 | 316 | 718 | 371 | 778 | 1.06e-152 | 462 |
MS.gene051729.t1 | MTR_1g086980 | 43.506 | 308 | 156 | 6 | 42 | 333 | 2 | 307 | 1.21e-70 | 246 |
MS.gene051729.t1 | MTR_1g086980 | 56.174 | 413 | 166 | 6 | 316 | 718 | 350 | 757 | 1.25e-152 | 462 |
MS.gene051729.t1 | MTR_1g086980 | 44.361 | 266 | 139 | 4 | 76 | 333 | 22 | 286 | 9.41e-64 | 226 |
MS.gene051729.t1 | MTR_1g086980 | 56.174 | 413 | 166 | 6 | 316 | 718 | 422 | 829 | 1.65e-152 | 464 |
MS.gene051729.t1 | MTR_1g086980 | 42.529 | 348 | 182 | 6 | 2 | 333 | 13 | 358 | 8.53e-78 | 266 |
MS.gene051729.t1 | MTR_1g086980 | 56.174 | 413 | 166 | 6 | 316 | 718 | 402 | 809 | 2.27e-152 | 462 |
MS.gene051729.t1 | MTR_1g086980 | 42.985 | 335 | 173 | 6 | 15 | 333 | 6 | 338 | 5.83e-77 | 264 |
MS.gene051729.t1 | MTR_1g086980 | 56.174 | 413 | 166 | 6 | 316 | 718 | 412 | 819 | 2.45e-152 | 463 |
MS.gene051729.t1 | MTR_1g086980 | 42.985 | 335 | 173 | 6 | 15 | 333 | 16 | 348 | 7.77e-77 | 264 |
MS.gene051729.t1 | MTR_5g016870 | 50.346 | 433 | 198 | 9 | 292 | 717 | 440 | 862 | 2.81e-131 | 409 |
MS.gene051729.t1 | MTR_5g016870 | 30.476 | 315 | 188 | 6 | 10 | 293 | 24 | 338 | 9.03e-38 | 151 |
MS.gene051729.t1 | MTR_1g086980 | 57.349 | 347 | 136 | 4 | 316 | 652 | 412 | 756 | 7.57e-131 | 405 |
MS.gene051729.t1 | MTR_1g086980 | 42.985 | 335 | 173 | 6 | 15 | 333 | 16 | 348 | 2.35e-77 | 264 |
MS.gene051729.t1 | MTR_1g086980 | 52.113 | 284 | 124 | 4 | 316 | 589 | 350 | 631 | 5.51e-89 | 292 |
MS.gene051729.t1 | MTR_1g086980 | 44.361 | 266 | 139 | 4 | 76 | 333 | 22 | 286 | 9.45e-65 | 227 |
MS.gene051729.t1 | MTR_1g086980 | 52.113 | 284 | 124 | 4 | 316 | 589 | 412 | 693 | 8.38e-89 | 293 |
MS.gene051729.t1 | MTR_1g086980 | 42.985 | 335 | 173 | 6 | 15 | 333 | 16 | 348 | 6.33e-78 | 264 |
MS.gene051729.t1 | MTR_1g086980 | 42.985 | 335 | 173 | 6 | 15 | 333 | 16 | 348 | 3.83e-78 | 263 |
MS.gene051729.t1 | MTR_1g086980 | 50.427 | 234 | 105 | 3 | 316 | 539 | 412 | 644 | 3.49e-67 | 234 |
MS.gene051729.t1 | MTR_2g036060 | 36.364 | 132 | 81 | 2 | 563 | 691 | 1027 | 1158 | 3.27e-20 | 96.7 |
MS.gene051729.t1 | MTR_2g036060 | 36.364 | 132 | 81 | 2 | 563 | 691 | 1052 | 1183 | 3.42e-20 | 96.7 |
MS.gene051729.t1 | MTR_1g098370 | 35.625 | 160 | 83 | 4 | 527 | 684 | 75 | 216 | 3.22e-19 | 92.0 |
MS.gene051729.t1 | MTR_1g098000 | 34.524 | 168 | 90 | 4 | 519 | 684 | 64 | 213 | 5.41e-19 | 91.3 |
MS.gene051729.t1 | MTR_1g008230 | 33.582 | 134 | 87 | 2 | 557 | 688 | 603 | 736 | 2.28e-17 | 87.0 |
MS.gene051729.t1 | MTR_1g008230 | 33.582 | 134 | 87 | 2 | 557 | 688 | 881 | 1014 | 5.23e-17 | 86.3 |
MS.gene051729.t1 | MTR_0071s0100 | 32.331 | 133 | 86 | 2 | 557 | 686 | 199 | 330 | 3.02e-16 | 81.6 |
MS.gene051729.t1 | MTR_3g091310 | 34.426 | 122 | 78 | 2 | 569 | 688 | 922 | 1043 | 5.07e-16 | 82.8 |
MS.gene051729.t1 | MTR_3g091310 | 34.426 | 122 | 78 | 2 | 569 | 688 | 828 | 949 | 5.28e-16 | 82.8 |
MS.gene051729.t1 | MTR_7g117355 | 34.146 | 123 | 79 | 2 | 569 | 689 | 823 | 945 | 2.01e-15 | 80.9 |
MS.gene051729.t1 | MTR_7g021365 | 34.711 | 121 | 76 | 1 | 567 | 684 | 904 | 1024 | 2.09e-15 | 80.9 |
MS.gene051729.t1 | MTR_1g012910 | 32.540 | 126 | 79 | 1 | 565 | 684 | 360 | 485 | 2.42e-15 | 79.7 |
MS.gene051729.t1 | MTR_8g064240 | 52.459 | 61 | 29 | 0 | 631 | 691 | 1 | 61 | 2.52e-15 | 72.4 |
MS.gene051729.t1 | MTR_1g012910 | 32.540 | 126 | 79 | 1 | 565 | 684 | 523 | 648 | 3.06e-15 | 80.1 |
MS.gene051729.t1 | MTR_1g012890 | 30.709 | 127 | 82 | 1 | 565 | 685 | 220 | 346 | 1.48e-14 | 76.3 |
MS.gene051729.t1 | MTR_8g027725 | 31.967 | 122 | 81 | 2 | 569 | 688 | 793 | 914 | 2.56e-14 | 77.4 |
MS.gene051729.t1 | MTR_8g027725 | 31.967 | 122 | 81 | 2 | 569 | 688 | 808 | 929 | 2.58e-14 | 77.4 |
MS.gene051729.t1 | MTR_8g064250 | 54.098 | 61 | 28 | 0 | 656 | 716 | 8 | 68 | 3.63e-13 | 66.6 |
MS.gene051729.t1 | MTR_6g059310 | 32.231 | 121 | 80 | 2 | 568 | 686 | 112 | 232 | 1.00e-12 | 70.5 |
MS.gene051729.t1 | MTR_6g059310 | 32.231 | 121 | 80 | 2 | 568 | 686 | 112 | 232 | 1.04e-12 | 70.5 |
MS.gene051729.t1 | MTR_8g064320 | 50.820 | 61 | 30 | 0 | 656 | 716 | 10 | 70 | 7.29e-12 | 63.2 |
MS.gene051729.t1 | MTR_4g010830 | 30.814 | 172 | 80 | 5 | 547 | 685 | 787 | 952 | 1.23e-11 | 68.9 |
MS.gene051729.t1 | MTR_5g013420 | 33.533 | 167 | 70 | 6 | 556 | 688 | 905 | 1064 | 1.32e-11 | 68.6 |
MS.gene051729.t1 | MTR_5g013420 | 33.533 | 167 | 70 | 6 | 556 | 688 | 905 | 1064 | 1.34e-11 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051729.t1 | AT4G02020 | 59.459 | 370 | 135 | 6 | 358 | 718 | 491 | 854 | 1.14e-144 | 444 |
MS.gene051729.t1 | AT4G02020 | 41.754 | 285 | 151 | 6 | 26 | 299 | 34 | 314 | 6.93e-57 | 208 |
MS.gene051729.t1 | AT2G23380 | 51.781 | 421 | 172 | 9 | 321 | 717 | 261 | 674 | 1.94e-131 | 404 |
MS.gene051729.t1 | AT2G23380 | 45.556 | 90 | 46 | 3 | 208 | 296 | 7 | 94 | 4.78e-14 | 76.3 |
MS.gene051729.t1 | AT2G23380 | 51.781 | 421 | 172 | 9 | 321 | 717 | 488 | 901 | 8.66e-130 | 407 |
MS.gene051729.t1 | AT2G23380 | 35.032 | 314 | 167 | 9 | 8 | 296 | 20 | 321 | 1.32e-39 | 157 |
MS.gene051729.t1 | AT4G02020 | 59.873 | 314 | 114 | 4 | 358 | 662 | 491 | 801 | 4.75e-123 | 386 |
MS.gene051729.t1 | AT4G02020 | 41.754 | 285 | 151 | 6 | 26 | 299 | 34 | 314 | 3.70e-57 | 209 |
MS.gene051729.t1 | AT1G02580 | 38.898 | 599 | 303 | 16 | 98 | 684 | 113 | 660 | 8.89e-122 | 380 |
MS.gene051729.t1 | AT4G02020 | 60.000 | 280 | 100 | 4 | 358 | 628 | 491 | 767 | 6.82e-107 | 344 |
MS.gene051729.t1 | AT4G02020 | 41.754 | 285 | 151 | 6 | 26 | 299 | 34 | 314 | 3.24e-57 | 209 |
MS.gene051729.t1 | AT4G02020 | 60.000 | 280 | 100 | 4 | 358 | 628 | 491 | 767 | 6.82e-107 | 344 |
MS.gene051729.t1 | AT4G02020 | 41.754 | 285 | 151 | 6 | 26 | 299 | 34 | 314 | 3.24e-57 | 209 |
MS.gene051729.t1 | AT1G02580 | 35.503 | 507 | 260 | 17 | 98 | 589 | 113 | 567 | 2.59e-79 | 265 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT5G42400 | 30.928 | 194 | 121 | 4 | 501 | 691 | 1192 | 1375 | 3.43e-19 | 93.6 |
MS.gene051729.t1 | AT1G76710 | 32.979 | 188 | 102 | 6 | 499 | 684 | 42 | 207 | 3.21e-18 | 89.0 |
MS.gene051729.t1 | AT1G76710 | 34.286 | 175 | 94 | 5 | 512 | 684 | 52 | 207 | 3.30e-18 | 89.0 |
MS.gene051729.t1 | AT1G76710 | 32.979 | 188 | 102 | 6 | 499 | 684 | 42 | 207 | 3.61e-18 | 88.6 |
MS.gene051729.t1 | AT1G76710 | 32.979 | 188 | 102 | 6 | 499 | 684 | 42 | 207 | 3.61e-18 | 88.6 |
MS.gene051729.t1 | AT4G30860 | 34.127 | 126 | 77 | 2 | 565 | 686 | 323 | 446 | 5.51e-18 | 88.2 |
MS.gene051729.t1 | AT2G31650 | 37.190 | 121 | 73 | 1 | 567 | 684 | 897 | 1017 | 8.83e-17 | 85.5 |
MS.gene051729.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 567 | 684 | 918 | 1038 | 4.96e-16 | 83.2 |
MS.gene051729.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 567 | 684 | 918 | 1038 | 4.96e-16 | 83.2 |
MS.gene051729.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 567 | 684 | 918 | 1038 | 4.96e-16 | 83.2 |
MS.gene051729.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 567 | 684 | 918 | 1038 | 4.96e-16 | 83.2 |
MS.gene051729.t1 | AT5G53430 | 32.836 | 134 | 88 | 2 | 557 | 688 | 890 | 1023 | 5.00e-16 | 83.2 |
MS.gene051729.t1 | AT4G27910 | 32.090 | 134 | 89 | 2 | 557 | 688 | 874 | 1007 | 1.57e-15 | 81.3 |
MS.gene051729.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 568 | 686 | 111 | 231 | 9.81e-15 | 75.9 |
MS.gene051729.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 568 | 686 | 111 | 231 | 9.81e-15 | 75.9 |
MS.gene051729.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 568 | 686 | 111 | 231 | 9.81e-15 | 75.9 |
MS.gene051729.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 568 | 686 | 111 | 231 | 1.33e-14 | 76.3 |
MS.gene051729.t1 | AT3G61740 | 33.613 | 119 | 76 | 2 | 569 | 684 | 840 | 958 | 9.51e-14 | 75.5 |
MS.gene051729.t1 | AT3G61740 | 33.613 | 119 | 76 | 2 | 569 | 684 | 876 | 994 | 1.26e-13 | 75.1 |
MS.gene051729.t1 | AT2G44150 | 32.258 | 124 | 82 | 2 | 565 | 686 | 113 | 236 | 6.05e-13 | 71.6 |
MS.gene051729.t1 | AT1G77300 | 32.877 | 146 | 88 | 5 | 545 | 685 | 1005 | 1145 | 2.13e-12 | 71.6 |
MS.gene051729.t1 | AT1G77300 | 36.364 | 110 | 66 | 2 | 579 | 685 | 1037 | 1145 | 2.58e-12 | 71.2 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACCTTCTGGTTGCCAAAT+TGG | 0.150159 | 7.3:-50008297 | None:intergenic |
GAATGTTCTTGTCTTCTTAA+AGG | 0.159465 | 7.3:+50011560 | MS.gene051729:CDS |
CTCCTTACAGAATATATTAA+TGG | 0.172721 | 7.3:-50008192 | None:intergenic |
TGAAAATATGAATCTTCTTT+TGG | 0.177238 | 7.3:+50012664 | MS.gene051729:CDS |
GGAGAAAGATATATGTTTAA+AGG | 0.212479 | 7.3:+50009182 | MS.gene051729:CDS |
AATGCGTTCCTTGGCAAATA+TGG | 0.236798 | 7.3:-50014296 | None:intergenic |
CTGTTTCCATCCGCTCCTTT+TGG | 0.259909 | 7.3:-50004304 | None:intergenic |
GTATCATTTAAGCATACTTC+TGG | 0.260944 | 7.3:+50004939 | MS.gene051729:CDS |
CATACTTCCCTCTCACCTTC+TGG | 0.281824 | 7.3:-50008309 | None:intergenic |
AGGATGACATTTGAAGAATA+TGG | 0.282881 | 7.3:+50005517 | MS.gene051729:intron |
AATGGATCTATAGATGAAAA+TGG | 0.289635 | 7.3:+50010748 | MS.gene051729:CDS |
AGAGAAAATGCATCTAATTC+TGG | 0.297548 | 7.3:+50006127 | MS.gene051729:CDS |
CAAAGGTTTCCCACAAGGTT+TGG | 0.310070 | 7.3:+50004887 | MS.gene051729:CDS |
TGGATGGGGAGCCTTCTTAA+AGG | 0.310146 | 7.3:+50012817 | MS.gene051729:CDS |
TCATCAGAAGGTTCAACTTC+AGG | 0.314585 | 7.3:+50008997 | MS.gene051729:CDS |
CATCATGGATACACTTGTTT+AGG | 0.321050 | 7.3:+50004994 | MS.gene051729:CDS |
CCTTATCATCCACGTCAAAA+AGG | 0.325525 | 7.3:-50013451 | None:intergenic |
AGGTGTATAGTGAGGCTTAT+AGG | 0.328496 | 7.3:-50011510 | None:intergenic |
AGTGATTTCCTTTGAATTAG+AGG | 0.339236 | 7.3:-50009076 | None:intergenic |
GACAACAGTGTCAAGATATA+AGG | 0.347512 | 7.3:+50004815 | MS.gene051729:CDS |
CTACCTCTCCTGGAGCTTGA+TGG | 0.348538 | 7.3:-50011395 | None:intergenic |
GAGAAAGATATATGTTTAAA+GGG | 0.348869 | 7.3:+50009183 | MS.gene051729:CDS |
AGAGGGAAAAGCAACCAATT+TGG | 0.356361 | 7.3:+50008283 | MS.gene051729:intron |
AATATTGTTCGAAGCTATAT+TGG | 0.363346 | 7.3:+50005559 | MS.gene051729:CDS |
CAACAATCTTTACACACATC+TGG | 0.368941 | 7.3:-50011833 | None:intergenic |
TTAAAGGGAATAGAGATGTT+TGG | 0.368970 | 7.3:+50009198 | MS.gene051729:CDS |
AAAGGTTTCCCACAAGGTTT+GGG | 0.369857 | 7.3:+50004888 | MS.gene051729:CDS |
GGAGAATGTAGAAGAGATAT+TGG | 0.383859 | 7.3:+50009050 | MS.gene051729:CDS |
TGGAGATCATTGTTACCTTA+AGG | 0.384564 | 7.3:+50008332 | MS.gene051729:CDS |
ATATGTCGGAACTTACTTGC+TGG | 0.385879 | 7.3:+50010676 | MS.gene051729:CDS |
GTATAGGGTATGTTTGTTGC+TGG | 0.388339 | 7.3:+50014259 | MS.gene051729:intron |
ATTGTTTGAATTTCATTATC+CGG | 0.389689 | 7.3:-50009027 | None:intergenic |
AAACCTTTGTATGTCTCTAA+TGG | 0.393901 | 7.3:-50004873 | None:intergenic |
TTCAAGACGTGCATGGAAAT+AGG | 0.396142 | 7.3:+50010700 | MS.gene051729:CDS |
TTAGCAAGGTCTGATGTTGC+TGG | 0.397541 | 7.3:+50012797 | MS.gene051729:CDS |
ATCTAATTCTGGCCTATGTT+TGG | 0.405339 | 7.3:+50006138 | MS.gene051729:CDS |
TCCAGGAGAGGTAGGAGAAA+AGG | 0.416552 | 7.3:+50011404 | MS.gene051729:CDS |
ACCAGCTTCAATGCGTTCCT+TGG | 0.430206 | 7.3:-50014305 | None:intergenic |
ATCTTGTTCATCAAGATTTG+AGG | 0.430475 | 7.3:-50004260 | None:intergenic |
CATCAGAAGGTTCAACTTCA+GGG | 0.434183 | 7.3:+50008998 | MS.gene051729:CDS |
AGTCTCGAGGCATCCGATCT+TGG | 0.440108 | 7.3:+50011456 | MS.gene051729:CDS |
ATGGTGAAGACGAACTTCTA+TGG | 0.443474 | 7.3:+50005252 | MS.gene051729:CDS |
GGTGTATAGTGAGGCTTATA+GGG | 0.443925 | 7.3:-50011509 | None:intergenic |
TTCTTTGTTCTCTTCTTCAT+CGG | 0.444133 | 7.3:-50005210 | None:intergenic |
TATCACAGAATGGAAACCTT+TGG | 0.447819 | 7.3:+50009161 | MS.gene051729:CDS |
ATCTTGCCCTTCCATTGAGT+TGG | 0.448245 | 7.3:-50009124 | None:intergenic |
AACAATATTCAACACTTCAT+CGG | 0.465426 | 7.3:-50005545 | None:intergenic |
CAGATGTGTGTAAAGATTGT+TGG | 0.468719 | 7.3:+50011834 | MS.gene051729:CDS |
CCAGGAGAGGTAGGAGAAAA+GGG | 0.475984 | 7.3:+50011405 | MS.gene051729:CDS |
GCCAAGGAACGCATTGAAGC+TGG | 0.482792 | 7.3:+50014304 | MS.gene051729:CDS |
GATGCGTTTATCCAACTCAA+TGG | 0.488340 | 7.3:+50009113 | MS.gene051729:CDS |
GGGCCAGTCCCTCGTGGAGA+TGG | 0.493848 | 7.3:+50012635 | MS.gene051729:CDS |
TGACCATCTCCACGAGGGAC+TGG | 0.495922 | 7.3:-50012638 | None:intergenic |
ATTTATTACCCAAACCTTGT+GGG | 0.499075 | 7.3:-50004896 | None:intergenic |
AAACATCTTAACCTTTAAGA+AGG | 0.506218 | 7.3:-50012828 | None:intergenic |
GTGATTTCCTTTGAATTAGA+GGG | 0.513594 | 7.3:-50009075 | None:intergenic |
AAACATATATCTTTCTCCAA+AGG | 0.515068 | 7.3:-50009177 | None:intergenic |
TGGAGCTTGATGGCACCTCA+TGG | 0.515829 | 7.3:-50011385 | None:intergenic |
AGATACCTCATTATACATCA+TGG | 0.526029 | 7.3:+50004979 | MS.gene051729:CDS |
AAGGTCTGATGTTGCTGGAT+GGG | 0.527692 | 7.3:+50012802 | MS.gene051729:CDS |
TGTGGTGATGATACGTTTGA+AGG | 0.529298 | 7.3:+50012614 | MS.gene051729:CDS |
ATGCATGAAGAGATTCCAAA+TGG | 0.529683 | 7.3:+50010730 | MS.gene051729:CDS |
ATGAGGTGCCATCAAGCTCC+AGG | 0.530104 | 7.3:+50011387 | MS.gene051729:CDS |
GACTACCTGTGGATAACAGT+TGG | 0.530993 | 7.3:-50013736 | None:intergenic |
CATTTATTACCCAAACCTTG+TGG | 0.534449 | 7.3:-50004897 | None:intergenic |
AACAGTTGGGTTCTGAAGAG+TGG | 0.535930 | 7.3:-50013722 | None:intergenic |
AGATGTGTGTAAAGATTGTT+GGG | 0.536713 | 7.3:+50011835 | MS.gene051729:CDS |
TTTGGATAAAAGTTTGAGTG+AGG | 0.537637 | 7.3:+50006156 | MS.gene051729:CDS |
GAAGGTGAGAGGGAAGTATG+TGG | 0.544057 | 7.3:+50008312 | MS.gene051729:CDS |
GTTGAAAGAAAAGATCCAAA+AGG | 0.544144 | 7.3:+50004289 | MS.gene051729:CDS |
TGACACTGTTGTCATGACCT+TGG | 0.545294 | 7.3:-50004805 | None:intergenic |
ACTACCTGTGGATAACAGTT+GGG | 0.550257 | 7.3:-50013735 | None:intergenic |
AGGTCTGATGTTGCTGGATG+GGG | 0.550995 | 7.3:+50012803 | MS.gene051729:CDS |
TTGTATTGATGCTTATCGCA+AGG | 0.552057 | 7.3:+50013677 | MS.gene051729:CDS |
AGGTACCACTGCAGAAATTG+AGG | 0.552212 | 7.3:+50005582 | MS.gene051729:CDS |
AACAATCTTTACACACATCT+GGG | 0.552907 | 7.3:-50011832 | None:intergenic |
ATCTTTGATTGTCCTCTGCA+CGG | 0.553369 | 7.3:+50008159 | MS.gene051729:CDS |
CATCAAGCTCCAGGAGAGGT+AGG | 0.553728 | 7.3:+50011396 | MS.gene051729:CDS |
CGTTTATCCAACTCAATGGA+AGG | 0.558111 | 7.3:+50009117 | MS.gene051729:CDS |
AAAGAATCTACAAATTCTCA+TGG | 0.561243 | 7.3:+50014415 | MS.gene051729:CDS |
TGCTGGCTTCAAGACGTGCA+TGG | 0.563883 | 7.3:+50010693 | MS.gene051729:CDS |
CAAGGTCTGATGTTGCTGGA+TGG | 0.567604 | 7.3:+50012801 | MS.gene051729:CDS |
GGATAATGAAATTCAAACAA+TGG | 0.569073 | 7.3:+50009029 | MS.gene051729:CDS |
AAAGATCCAAAAGGAGCGGA+TGG | 0.569833 | 7.3:+50004298 | MS.gene051729:CDS |
ATTGGCACCCTCTAATTCAA+AGG | 0.571932 | 7.3:+50009068 | MS.gene051729:CDS |
TCTCCAATGTGAACTTTCCA+AGG | 0.573777 | 7.3:+50004788 | MS.gene051729:CDS |
TGATGTATAATATCACAGAA+TGG | 0.574561 | 7.3:+50009151 | MS.gene051729:CDS |
ATTGTTCGAAGCTATATTGG+AGG | 0.577334 | 7.3:+50005562 | MS.gene051729:CDS |
TGTATCCATGATGTATAATG+AGG | 0.582754 | 7.3:-50004984 | None:intergenic |
TCTACAAATTCTCATGGCAA+AGG | 0.584690 | 7.3:+50014421 | MS.gene051729:CDS |
TGTATTGATGCTTATCGCAA+GGG | 0.585357 | 7.3:+50013678 | MS.gene051729:CDS |
TATGCAGTTGTCTTATATGT+CGG | 0.585978 | 7.3:+50010662 | MS.gene051729:intron |
GATGTCAATATCTCATCAGA+AGG | 0.588941 | 7.3:+50008985 | MS.gene051729:CDS |
CAATGCAGATATCGATTCAG+AGG | 0.596181 | 7.3:+50011740 | MS.gene051729:CDS |
ATATATTACGATCAACATGC+AGG | 0.606040 | 7.3:+50005164 | MS.gene051729:CDS |
AAAATCAAAGAGCACCCTCA+TGG | 0.608079 | 7.3:+50014359 | MS.gene051729:CDS |
TGTGTAAAGATTGTTGGGCC+AGG | 0.608263 | 7.3:+50011840 | MS.gene051729:CDS |
ACATACAAAGGTTTCCCACA+AGG | 0.608598 | 7.3:+50004882 | MS.gene051729:CDS |
TTTGGCAACCAGAAGGTGAG+AGG | 0.613167 | 7.3:+50008301 | MS.gene051729:CDS |
CAACCAATTTGGCAACCAGA+AGG | 0.613641 | 7.3:+50008294 | MS.gene051729:CDS |
CACATTGACCATCTCCACGA+GGG | 0.615789 | 7.3:-50012643 | None:intergenic |
CTTTGTATGTCTCTAATGGA+TGG | 0.618170 | 7.3:-50004869 | None:intergenic |
ATACATTATGAACAACATGA+AGG | 0.620251 | 7.3:-50004920 | None:intergenic |
AAAACAAACTCTAGGTCTAG+AGG | 0.620684 | 7.3:-50003973 | None:intergenic |
GGAACGCATTGAAGCTGGTG+AGG | 0.621126 | 7.3:+50014309 | MS.gene051729:CDS |
CTTGTTGTGAGAAATACTGC+GGG | 0.625135 | 7.3:+50011585 | MS.gene051729:CDS |
AGATCTTCTTCAAAGTCTCG+AGG | 0.626968 | 7.3:+50011443 | MS.gene051729:CDS |
AGAACCCAACTGTTATCCAC+AGG | 0.631114 | 7.3:+50013731 | MS.gene051729:CDS |
CACATTCCTTGACACTCGCA+AGG | 0.632512 | 7.3:-50011530 | None:intergenic |
TTGGCAACCAGAAGGTGAGA+GGG | 0.633976 | 7.3:+50008302 | MS.gene051729:CDS |
TCGTGTAGCCATATTTGCCA+AGG | 0.642012 | 7.3:+50014288 | MS.gene051729:CDS |
TATACACCTTGCGAGTGTCA+AGG | 0.643572 | 7.3:+50011524 | MS.gene051729:CDS |
TGACCTTGGAAAGTTCACAT+TGG | 0.643642 | 7.3:-50004791 | None:intergenic |
GTGCCATCAAGCTCCAGGAG+AGG | 0.645639 | 7.3:+50011392 | MS.gene051729:CDS |
ATTGGCTTCAAGAAACCATG+AGG | 0.645862 | 7.3:-50014374 | None:intergenic |
GGTTGAGAACATCCGTGCAG+AGG | 0.648329 | 7.3:-50008171 | None:intergenic |
GTTTATCCAACTCAATGGAA+GGG | 0.649922 | 7.3:+50009118 | MS.gene051729:CDS |
CACTCGCAAGGTGTATAGTG+AGG | 0.651527 | 7.3:-50011518 | None:intergenic |
GTGGTGATGATACGTTTGAA+GGG | 0.651606 | 7.3:+50012615 | MS.gene051729:CDS |
AAGAAAAGATCCAAAAGGAG+CGG | 0.652997 | 7.3:+50004294 | MS.gene051729:CDS |
CATCCATTAGAGACATACAA+AGG | 0.663649 | 7.3:+50004870 | MS.gene051729:CDS |
TTTGAAGGGCCAGTCCCTCG+TGG | 0.670035 | 7.3:+50012629 | MS.gene051729:CDS |
TTGGCTTCAAGAAACCATGA+GGG | 0.673115 | 7.3:-50014373 | None:intergenic |
TCTTGTTGTGAGAAATACTG+CGG | 0.680957 | 7.3:+50011584 | MS.gene051729:CDS |
CACAAAGAAGCAGAAAAGCG+TGG | 0.684801 | 7.3:+50013398 | MS.gene051729:CDS |
TCACATTGACCATCTCCACG+AGG | 0.712924 | 7.3:-50012644 | None:intergenic |
GAGTATTTAGGAGAGTACAC+AGG | 0.736960 | 7.3:+50013362 | MS.gene051729:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 50003948 | 50014459 | 50003948 | ID=MS.gene051729 |
chr7.3 | mRNA | 50003948 | 50014459 | 50003948 | ID=MS.gene051729.t1;Parent=MS.gene051729 |
chr7.3 | exon | 50003948 | 50003986 | 50003948 | ID=MS.gene051729.t1.exon1;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50003948 | 50003986 | 50003948 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50004239 | 50004331 | 50004239 | ID=MS.gene051729.t1.exon2;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50004239 | 50004331 | 50004239 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50004762 | 50005015 | 50004762 | ID=MS.gene051729.t1.exon3;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50004762 | 50005015 | 50004762 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50005118 | 50005273 | 50005118 | ID=MS.gene051729.t1.exon4;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50005118 | 50005273 | 50005118 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50005519 | 50005603 | 50005519 | ID=MS.gene051729.t1.exon5;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50005519 | 50005603 | 50005519 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50006079 | 50006219 | 50006079 | ID=MS.gene051729.t1.exon6;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50006079 | 50006219 | 50006079 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50008159 | 50008206 | 50008159 | ID=MS.gene051729.t1.exon7;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50008159 | 50008206 | 50008159 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50008285 | 50008353 | 50008285 | ID=MS.gene051729.t1.exon8;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50008285 | 50008353 | 50008285 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50008979 | 50009229 | 50008979 | ID=MS.gene051729.t1.exon9;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50008979 | 50009229 | 50008979 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50010669 | 50010792 | 50010669 | ID=MS.gene051729.t1.exon10;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50010669 | 50010792 | 50010669 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50011383 | 50011606 | 50011383 | ID=MS.gene051729.t1.exon11;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50011383 | 50011606 | 50011383 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50011730 | 50011861 | 50011730 | ID=MS.gene051729.t1.exon12;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50011730 | 50011861 | 50011730 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50012613 | 50012703 | 50012613 | ID=MS.gene051729.t1.exon13;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50012613 | 50012703 | 50012613 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50012791 | 50012838 | 50012791 | ID=MS.gene051729.t1.exon14;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50012791 | 50012838 | 50012791 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50013344 | 50013472 | 50013344 | ID=MS.gene051729.t1.exon15;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50013344 | 50013472 | 50013344 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50013675 | 50013752 | 50013675 | ID=MS.gene051729.t1.exon16;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50013675 | 50013752 | 50013675 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
chr7.3 | exon | 50014265 | 50014459 | 50014265 | ID=MS.gene051729.t1.exon17;Parent=MS.gene051729.t1 |
chr7.3 | CDS | 50014265 | 50014459 | 50014265 | ID=cds.MS.gene051729.t1;Parent=MS.gene051729.t1 |
Gene Sequence |
Protein sequence |