AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05200.t1 MTR_7g005280 80.309 259 26 7 1 237 1 256 2.18e-135 381
MS.gene05200.t1 MTR_8g099750 56.250 176 66 3 1 166 1 175 1.19e-67 208
MS.gene05200.t1 MTR_3g098810 50.222 225 86 5 1 211 1 213 2.72e-65 202
MS.gene05200.t1 MTR_3g098810 60.927 151 56 2 1 148 1 151 5.66e-58 182
MS.gene05200.t1 MTR_4g089135 53.143 175 53 3 13 158 14 188 5.89e-55 179
MS.gene05200.t1 MTR_2g080010 53.704 162 58 3 14 158 15 176 1.05e-53 176
MS.gene05200.t1 MTR_7g070140 55.307 179 24 3 59 237 12 134 3.27e-53 168
MS.gene05200.t1 MTR_7g085220 48.824 170 68 5 11 162 5 173 1.60e-52 173
MS.gene05200.t1 MTR_5g041940 53.165 158 62 3 12 159 1 156 3.03e-52 170
MS.gene05200.t1 MTR_4g081870 54.088 159 61 4 14 162 9 165 3.83e-52 170
MS.gene05200.t1 MTR_7g100990 51.592 157 66 3 9 155 6 162 1.17e-51 171
MS.gene05200.t1 MTR_4g108760 46.875 192 87 6 1 179 1 190 1.63e-51 171
MS.gene05200.t1 MTR_2g093810 52.632 152 62 2 14 155 14 165 2.89e-51 169
MS.gene05200.t1 MTR_3g088110 55.063 158 59 4 11 159 4 158 7.46e-51 167
MS.gene05200.t1 MTR_3g109340 42.381 210 106 4 11 205 19 228 3.42e-50 167
MS.gene05200.t1 MTR_2157s0010 50.932 161 63 4 14 158 8 168 3.46e-50 165
MS.gene05200.t1 MTR_3g109340 42.180 211 106 4 11 205 19 229 6.24e-50 167
MS.gene05200.t1 MTR_2g064090 51.266 158 62 4 12 158 4 157 6.71e-49 164
MS.gene05200.t1 MTR_3g064580 55.063 158 56 5 12 158 4 157 8.87e-49 170
MS.gene05200.t1 MTR_1g008740 50.625 160 72 4 11 164 10 168 1.46e-48 163
MS.gene05200.t1 MTR_4g036030 50.980 153 66 4 14 159 7 157 1.50e-48 163
MS.gene05200.t1 MTR_1g008740 48.851 174 77 5 11 178 24 191 1.64e-48 163
MS.gene05200.t1 MTR_4g035590 47.253 182 83 6 14 185 8 186 2.13e-48 163
MS.gene05200.t1 MTR_1g069805 40.000 220 122 3 14 224 10 228 3.06e-48 160
MS.gene05200.t1 MTR_2g078700 47.500 160 76 2 11 162 20 179 3.90e-48 163
MS.gene05200.t1 MTR_3g435150 47.024 168 79 3 11 170 13 178 4.03e-48 160
MS.gene05200.t1 MTR_5g076850 47.027 185 76 7 12 186 4 176 4.35e-47 165
MS.gene05200.t1 MTR_2g079990 51.497 167 70 4 10 167 12 176 5.45e-47 159
MS.gene05200.t1 MTR_6g084430 48.101 158 76 3 11 164 2 157 5.84e-47 158
MS.gene05200.t1 MTR_1g096430 46.667 165 79 3 11 168 4 166 7.05e-47 158
MS.gene05200.t1 MTR_8g094580 51.235 162 64 4 9 159 2 159 7.85e-47 157
MS.gene05200.t1 MTR_4g101680 50.000 154 68 3 13 159 6 157 7.87e-47 159
MS.gene05200.t1 MTR_2g062730 47.134 157 75 3 10 159 6 161 1.17e-46 158
MS.gene05200.t1 MTR_5g021710 48.428 159 73 4 14 165 8 164 1.40e-46 158
MS.gene05200.t1 MTR_5g012080 47.436 156 73 3 14 161 7 161 2.01e-46 157
MS.gene05200.t1 MTR_6g012670 45.783 166 80 4 13 170 19 182 8.02e-46 155
MS.gene05200.t1 MTR_7g070150 70.270 111 14 2 102 212 1 92 1.60e-45 147
MS.gene05200.t1 MTR_8g059170 52.410 166 61 6 11 164 11 170 2.17e-45 154
MS.gene05200.t1 MTR_8g076110 49.673 153 68 4 14 159 6 156 2.78e-45 154
MS.gene05200.t1 MTR_3g070030 46.471 170 80 5 7 167 12 179 7.47e-45 154
MS.gene05200.t1 MTR_8g467490 36.508 252 134 4 1 231 1 247 7.81e-45 154
MS.gene05200.t1 MTR_8g024480 42.188 192 86 4 2 175 3 187 1.05e-44 155
MS.gene05200.t1 MTR_3g096920 50.000 160 68 4 9 159 2 158 1.41e-44 151
MS.gene05200.t1 MTR_7g097090 49.315 146 70 2 14 156 10 154 2.35e-44 150
MS.gene05200.t1 MTR_6g477900 47.742 155 71 3 12 158 4 156 3.95e-44 148
MS.gene05200.t1 MTR_5g014300 41.500 200 100 4 10 194 2 199 1.14e-43 150
MS.gene05200.t1 MTR_6g032770 44.099 161 82 2 12 164 16 176 2.73e-43 150
MS.gene05200.t1 MTR_5g040420 41.989 181 91 2 1 167 1 181 3.64e-43 150
MS.gene05200.t1 MTR_7g085260 47.368 171 77 5 1 158 1 171 3.78e-43 150
MS.gene05200.t1 MTR_2g064470 40.415 193 99 5 11 196 8 191 4.65e-43 147
MS.gene05200.t1 MTR_5g090970 44.554 202 90 7 8 194 13 207 7.59e-43 147
MS.gene05200.t1 MTR_2g079990 44.103 195 70 4 10 167 12 204 1.10e-42 149
MS.gene05200.t1 MTR_2g068880 42.553 188 86 5 6 172 13 199 2.84e-42 145
MS.gene05200.t1 MTR_5g090970 44.335 203 90 7 8 194 13 208 2.95e-42 145
MS.gene05200.t1 MTR_3g096140 45.238 168 76 5 16 172 9 171 5.95e-42 144
MS.gene05200.t1 MTR_7g011130 40.976 205 94 6 7 189 12 211 1.24e-41 145
MS.gene05200.t1 MTR_7g011120 44.693 179 79 6 7 168 1 176 3.05e-41 143
MS.gene05200.t1 MTR_3g096140 45.509 167 77 5 16 172 9 171 3.74e-41 144
MS.gene05200.t1 MTR_3g116070 48.611 144 70 3 8 147 17 160 5.53e-41 143
MS.gene05200.t1 MTR_4g098630 48.077 156 68 4 14 158 6 159 2.65e-40 140
MS.gene05200.t1 MTR_2g068920 42.408 191 88 6 1 171 9 197 4.15e-40 139
MS.gene05200.t1 MTR_3g096920 46.626 163 65 3 9 168 2 145 5.42e-40 140
MS.gene05200.t1 MTR_3g093040 44.516 155 76 3 12 158 106 258 7.15e-40 139
MS.gene05200.t1 MTR_3g070040 43.452 168 80 3 7 164 1 163 1.41e-39 139
MS.gene05200.t1 MTR_1g090720 46.471 170 73 4 14 168 42 208 3.35e-39 141
MS.gene05200.t1 MTR_0036s0150 46.707 167 75 5 16 172 7 169 7.32e-39 141
MS.gene05200.t1 MTR_6g011860 44.375 160 73 4 14 158 15 173 8.04e-39 139
MS.gene05200.t1 MTR_5g069030 47.097 155 72 3 13 159 24 176 9.34e-39 142
MS.gene05200.t1 MTR_3g093050 41.209 182 87 4 14 187 22 191 1.01e-38 141
MS.gene05200.t1 MTR_1g090723 45.833 168 76 5 16 172 10 173 1.22e-38 141
MS.gene05200.t1 MTR_3g093050 41.209 182 87 4 14 187 22 191 1.24e-38 141
MS.gene05200.t1 MTR_1g090723 45.509 167 77 5 16 172 10 172 2.86e-38 140
MS.gene05200.t1 MTR_1g090723 45.509 167 77 5 16 172 10 172 3.47e-38 140
MS.gene05200.t1 MTR_8g063550 41.765 170 85 4 13 172 5 170 8.85e-38 135
MS.gene05200.t1 MTR_1g097300 46.296 162 71 5 16 166 21 177 1.27e-37 138
MS.gene05200.t1 MTR_4g134460 45.455 154 77 4 16 165 56 206 1.91e-37 136
MS.gene05200.t1 MTR_8g063550 41.765 170 85 4 13 172 5 170 2.00e-37 136
MS.gene05200.t1 MTR_8g063550 41.765 170 85 4 13 172 5 170 3.73e-37 135
MS.gene05200.t1 MTR_2g086880 44.444 144 70 3 16 155 20 157 5.64e-36 133
MS.gene05200.t1 MTR_8g093580 37.500 192 106 4 13 194 5 192 7.33e-36 132
MS.gene05200.t1 MTR_2g086880 44.444 144 70 3 16 155 20 157 8.78e-36 133
MS.gene05200.t1 MTR_4g075980 44.218 147 76 3 16 158 17 161 1.61e-35 128
MS.gene05200.t1 MTR_8g023840 43.919 148 74 4 14 155 11 155 4.00e-35 129
MS.gene05200.t1 MTR_4g094302 39.610 154 75 3 14 156 11 157 4.07e-33 119
MS.gene05200.t1 MTR_4g094302 43.307 127 63 2 14 138 11 130 5.51e-32 115
MS.gene05200.t1 MTR_3g096140 42.105 152 74 5 31 172 3 150 2.98e-31 117
MS.gene05200.t1 MTR_8g023860 37.333 150 85 4 13 156 11 157 5.03e-29 113
MS.gene05200.t1 MTR_8g093790 40.881 159 72 7 12 167 8 147 1.11e-28 107
MS.gene05200.t1 MTR_8g023900 38.411 151 86 3 14 158 12 161 1.00e-27 110
MS.gene05200.t1 MTR_8g023900 38.514 148 82 4 17 158 196 340 4.50e-26 105
MS.gene05200.t1 MTR_4g052620 39.873 158 80 6 14 157 5 161 1.36e-27 106
MS.gene05200.t1 MTR_2g086690 39.623 159 78 6 15 157 5 161 4.14e-27 104
MS.gene05200.t1 MTR_8g023930 38.411 151 84 4 14 158 24 171 6.96e-27 107
MS.gene05200.t1 MTR_8g023880 34.392 189 95 7 14 181 7 187 2.45e-25 100
MS.gene05200.t1 MTR_8g094580 48.544 103 43 3 64 159 6 105 1.58e-23 95.1
MS.gene05200.t1 MTR_7g105170 32.544 169 88 7 14 161 4 167 4.98e-23 94.4
MS.gene05200.t1 MTR_3g096400 33.908 174 90 7 12 167 5 171 3.87e-20 85.5
MS.gene05200.t1 MTR_7g083360 33.582 134 82 4 7 136 3 133 4.29e-18 78.6
MS.gene05200.t1 MTR_7g083370 31.690 142 88 5 7 143 3 140 1.19e-17 77.0
MS.gene05200.t1 MTR_5g061450 66.667 84 12 4 157 237 14 84 2.65e-17 74.3
MS.gene05200.t1 MTR_7g083330 32.727 165 101 6 6 164 10 170 1.28e-16 75.9
MS.gene05200.t1 MTR_5g061420 66.667 84 12 4 157 237 14 84 1.18e-15 70.1
MS.gene05200.t1 MTR_1g045470 35.417 144 80 5 22 154 13 154 1.63e-15 74.7
MS.gene05200.t1 MTR_7g116460 31.507 146 87 5 20 154 11 154 2.74e-14 69.7
MS.gene05200.t1 MTR_1g087190 58.696 46 18 1 16 60 7 52 4.61e-11 57.0
MS.gene05200.t1 MTR_4g078875 27.004 237 133 13 14 218 48 276 8.49e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05200.t1 AT5G13180 70.659 167 47 1 1 165 1 167 1.55e-87 259
MS.gene05200.t1 AT2G33480 69.091 165 47 3 1 163 1 163 1.11e-79 240
MS.gene05200.t1 AT2G33480 68.263 167 47 3 1 163 1 165 2.12e-79 239
MS.gene05200.t1 AT1G61110 55.090 167 56 4 10 158 12 177 2.61e-54 177
MS.gene05200.t1 AT3G04070 52.353 170 65 4 8 161 4 173 2.50e-53 175
MS.gene05200.t1 AT1G77450 50.847 177 67 5 10 170 6 178 5.72e-53 172
MS.gene05200.t1 AT3G04070 48.387 186 64 4 8 161 4 189 4.15e-51 170
MS.gene05200.t1 AT2G24430 50.617 162 75 2 8 164 10 171 4.66e-51 169
MS.gene05200.t1 AT2G24430 50.617 162 75 2 8 164 10 171 4.66e-51 169
MS.gene05200.t1 AT1G69490 53.797 158 61 3 14 161 9 164 5.09e-51 167
MS.gene05200.t1 AT5G39610 43.350 203 97 5 12 198 18 218 8.57e-51 167
MS.gene05200.t1 AT3G15510 52.795 161 59 3 18 161 21 181 1.00e-50 169
MS.gene05200.t1 AT1G12260 51.899 158 67 4 14 164 7 162 3.05e-50 167
MS.gene05200.t1 AT5G07680 50.000 162 71 4 11 164 14 173 3.36e-50 167
MS.gene05200.t1 AT5G07680 50.943 159 68 4 14 164 3 159 4.02e-50 166
MS.gene05200.t1 AT3G03200 39.076 238 128 4 12 234 4 239 5.53e-50 170
MS.gene05200.t1 AT5G61430 50.617 162 70 5 11 164 13 172 1.34e-49 166
MS.gene05200.t1 AT1G12260 51.899 158 67 4 14 164 7 162 1.39e-49 167
MS.gene05200.t1 AT1G33280 49.682 157 61 3 14 159 8 157 2.78e-49 164
MS.gene05200.t1 AT3G18400 44.550 211 105 6 11 216 2 205 3.98e-49 164
MS.gene05200.t1 AT4G27410 49.102 167 77 3 11 171 11 175 8.83e-49 162
MS.gene05200.t1 AT4G10350 50.323 155 66 4 14 159 9 161 1.17e-48 163
MS.gene05200.t1 AT5G66300 50.303 165 70 5 4 159 2 163 1.64e-48 161
MS.gene05200.t1 AT5G17260 49.383 162 71 3 12 164 4 163 3.44e-48 165
MS.gene05200.t1 AT1G01720 51.515 165 67 4 12 166 5 166 4.70e-48 160
MS.gene05200.t1 AT5G53950 47.531 162 77 2 14 167 17 178 6.02e-48 162
MS.gene05200.t1 AT1G65910 43.915 189 90 5 12 190 4 186 6.46e-48 167
MS.gene05200.t1 AT1G76420 50.000 152 69 3 11 156 19 169 6.93e-48 161
MS.gene05200.t1 AT1G62700 50.633 158 69 4 13 163 6 161 1.46e-47 162
MS.gene05200.t1 AT1G62700 50.633 158 69 4 13 163 6 161 1.46e-47 162
MS.gene05200.t1 AT3G15170 48.718 156 72 3 11 158 17 172 1.52e-47 159
MS.gene05200.t1 AT1G54330 53.896 154 60 3 12 158 4 153 1.78e-47 159
MS.gene05200.t1 AT3G04060 51.613 155 66 4 12 158 18 171 2.50e-47 159
MS.gene05200.t1 AT2G18060 39.827 231 118 7 14 231 9 231 2.76e-47 160
MS.gene05200.t1 AT2G18060 39.827 231 118 7 14 231 9 231 2.76e-47 160
MS.gene05200.t1 AT5G18270 50.323 155 68 3 12 158 19 172 9.75e-47 158
MS.gene05200.t1 AT5G18270 50.323 155 68 3 12 158 19 172 1.72e-46 157
MS.gene05200.t1 AT1G52890 47.159 176 81 4 11 176 11 184 3.20e-46 156
MS.gene05200.t1 AT4G27410 44.565 184 77 3 11 171 11 192 4.57e-46 155
MS.gene05200.t1 AT5G62380 49.359 156 68 4 12 159 5 157 5.36e-46 156
MS.gene05200.t1 AT5G62380 49.359 156 68 4 12 159 5 157 5.36e-46 156
MS.gene05200.t1 AT4G36160 45.361 194 77 7 14 200 10 181 6.93e-46 157
MS.gene05200.t1 AT4G36160 45.361 194 77 7 14 200 10 181 6.93e-46 157
MS.gene05200.t1 AT4G36160 45.361 194 77 7 14 200 14 185 7.40e-46 157
MS.gene05200.t1 AT1G71930 50.000 152 67 4 14 158 9 158 1.34e-45 155
MS.gene05200.t1 AT1G71930 50.000 152 67 4 14 158 9 158 1.34e-45 155
MS.gene05200.t1 AT5G46590 45.930 172 79 4 10 170 2 170 1.75e-45 154
MS.gene05200.t1 AT5G63790 44.898 196 89 4 10 194 46 233 3.98e-45 153
MS.gene05200.t1 AT1G79580 48.408 157 72 4 10 159 13 167 4.78e-45 154
MS.gene05200.t1 AT1G79580 48.408 157 72 4 10 159 13 167 4.78e-45 154
MS.gene05200.t1 AT1G79580 48.408 157 72 4 10 159 13 167 4.78e-45 154
MS.gene05200.t1 AT1G79580 48.408 157 72 4 10 159 13 167 4.78e-45 154
MS.gene05200.t1 AT1G79580 48.408 157 72 4 10 159 13 167 4.78e-45 154
MS.gene05200.t1 AT3G12977 49.689 161 70 6 11 163 15 172 5.39e-45 152
MS.gene05200.t1 AT5G63790 44.898 196 89 4 10 194 56 243 5.77e-45 153
MS.gene05200.t1 AT1G52880 50.000 162 65 3 18 163 21 182 8.26e-45 152
MS.gene05200.t1 AT2G46770 43.820 178 76 4 4 159 6 181 9.00e-45 154
MS.gene05200.t1 AT3G10490 45.714 175 75 4 14 179 27 190 9.71e-45 150
MS.gene05200.t1 AT3G17730 47.097 155 72 3 12 158 4 156 1.47e-44 150
MS.gene05200.t1 AT1G32770 35.827 254 132 7 3 232 5 251 1.62e-44 153
MS.gene05200.t1 AT3G15500 48.447 161 75 3 11 165 11 169 1.71e-44 152
MS.gene05200.t1 AT3G10500 48.521 169 73 4 14 172 9 173 2.17e-44 156
MS.gene05200.t1 AT5G04410 50.920 163 66 4 14 166 9 167 2.43e-44 156
MS.gene05200.t1 AT5G08790 51.553 161 62 5 11 159 4 160 2.63e-44 150
MS.gene05200.t1 AT3G10480 46.286 175 74 4 14 179 27 190 4.16e-44 154
MS.gene05200.t1 AT3G29035 46.914 162 76 3 11 164 21 180 5.39e-44 150
MS.gene05200.t1 AT1G33060 49.673 153 67 3 14 158 24 174 1.05e-43 155
MS.gene05200.t1 AT1G33060 49.673 153 67 3 14 158 24 174 1.19e-43 155
MS.gene05200.t1 AT1G56010 41.799 189 89 5 11 189 16 193 1.68e-43 149
MS.gene05200.t1 AT3G61910 43.503 177 76 5 4 158 1 175 1.84e-43 149
MS.gene05200.t1 AT3G10480 45.977 174 75 4 14 179 27 189 5.43e-43 151
MS.gene05200.t1 AT4G35580 46.032 189 87 5 14 194 9 190 7.81e-43 152
MS.gene05200.t1 AT4G35580 46.032 189 87 5 14 194 9 190 8.08e-43 152
MS.gene05200.t1 AT4G35580 46.032 189 87 5 14 194 9 190 9.26e-43 151
MS.gene05200.t1 AT3G10490 45.714 175 75 4 14 179 27 190 1.44e-42 150
MS.gene05200.t1 AT4G17980 45.283 159 77 2 10 158 2 160 2.61e-42 144
MS.gene05200.t1 AT4G17980 45.283 159 77 2 10 158 2 160 4.31e-42 145
MS.gene05200.t1 AT2G33480 62.037 108 36 2 59 163 3 108 4.93e-42 142
MS.gene05200.t1 AT5G46590 48.299 147 66 3 10 149 2 145 9.77e-42 144
MS.gene05200.t1 AT5G39820 40.642 187 84 3 2 161 8 194 1.97e-40 142
MS.gene05200.t1 AT4G28530 43.931 173 77 4 7 160 3 174 5.59e-40 141
MS.gene05200.t1 AT2G17040 34.764 233 131 5 16 229 8 238 8.40e-40 138
MS.gene05200.t1 AT2G02450 41.304 184 96 5 16 195 53 228 1.26e-39 140
MS.gene05200.t1 AT2G02450 41.304 184 96 5 16 195 53 228 2.18e-39 140
MS.gene05200.t1 AT3G10480 38.942 208 74 4 14 179 27 223 3.67e-39 142
MS.gene05200.t1 AT1G34190 47.205 161 71 5 16 166 18 174 4.97e-39 142
MS.gene05200.t1 AT1G26870 38.916 203 102 5 14 194 16 218 5.18e-39 140
MS.gene05200.t1 AT1G34180 40.500 200 102 5 16 206 18 209 3.03e-38 138
MS.gene05200.t1 AT1G32510 40.097 207 94 7 14 193 6 209 3.45e-38 134
MS.gene05200.t1 AT5G64060 37.727 220 115 6 10 215 2 213 1.08e-37 135
MS.gene05200.t1 AT1G34180 39.151 212 100 6 16 206 18 221 1.24e-37 137
MS.gene05200.t1 AT3G49530 43.791 153 77 3 14 158 13 164 1.60e-37 135
MS.gene05200.t1 AT1G34180 40.500 200 102 5 16 206 18 209 1.68e-37 138
MS.gene05200.t1 AT3G49530 43.791 153 77 3 14 158 13 164 1.88e-37 136
MS.gene05200.t1 AT5G04395 44.138 145 64 2 11 138 25 169 3.26e-37 129
MS.gene05200.t1 AT1G34180 44.186 172 72 5 16 166 18 186 6.23e-37 136
MS.gene05200.t1 AT3G12910 44.720 161 69 5 16 156 23 183 6.58e-37 132
MS.gene05200.t1 AT2G43000 45.223 157 76 5 16 165 20 173 9.00e-37 130
MS.gene05200.t1 AT5G24590 44.937 158 70 4 14 159 13 165 1.29e-36 134
MS.gene05200.t1 AT5G09330 42.197 173 86 4 10 172 2 170 4.12e-36 133
MS.gene05200.t1 AT5G09330 42.197 173 86 4 10 172 2 170 4.12e-36 133
MS.gene05200.t1 AT5G09330 42.197 173 86 4 10 172 2 170 4.12e-36 133
MS.gene05200.t1 AT5G09330 42.197 173 86 4 10 172 2 170 4.12e-36 133
MS.gene05200.t1 AT5G09330 42.197 173 86 4 10 172 2 170 4.12e-36 133
MS.gene05200.t1 AT5G22290 37.222 180 104 3 16 191 23 197 3.89e-34 125
MS.gene05200.t1 AT2G27300 41.781 146 75 3 14 155 14 153 5.97e-34 124
MS.gene05200.t1 AT3G44290 40.972 144 75 3 16 155 16 153 1.50e-32 118
MS.gene05200.t1 AT5G64530 40.244 164 68 4 12 156 1 153 1.56e-32 117
MS.gene05200.t1 AT5G64530 45.736 129 57 3 12 138 1 118 6.59e-32 114
MS.gene05200.t1 AT3G44290 40.972 144 75 3 16 155 16 153 2.22e-31 118
MS.gene05200.t1 AT4G01550 38.462 182 96 6 17 191 7 179 2.17e-30 117
MS.gene05200.t1 AT4G10350 52.632 95 40 2 68 159 22 114 6.89e-30 113
MS.gene05200.t1 AT1G32870 45.882 170 76 6 7 166 5 168 7.01e-30 116
MS.gene05200.t1 AT1G32870 45.882 170 76 6 7 166 5 168 7.37e-30 116
MS.gene05200.t1 AT1G32870 45.882 170 76 6 7 166 41 204 8.79e-30 116
MS.gene05200.t1 AT5G14000 35.795 176 105 5 5 177 6 176 8.40e-29 108
MS.gene05200.t1 AT5G14000 38.095 147 86 3 7 150 8 152 4.99e-28 104
MS.gene05200.t1 AT1G02230 41.447 152 77 6 15 158 4 151 6.92e-28 109
MS.gene05200.t1 AT5G61430 49.057 106 47 3 64 164 6 109 9.37e-28 107
MS.gene05200.t1 AT3G12977 51.000 100 43 3 68 163 22 119 1.73e-26 102
MS.gene05200.t1 AT4G01520 39.873 158 81 6 15 162 5 158 2.81e-26 103
MS.gene05200.t1 AT1G56010 41.221 131 60 3 65 189 7 126 2.96e-26 102
MS.gene05200.t1 AT4G01540 40.385 156 79 6 17 162 7 158 1.90e-25 103
MS.gene05200.t1 AT4G01540 40.385 156 79 6 17 162 7 158 2.26e-25 103
MS.gene05200.t1 AT4G01540 40.385 156 79 6 17 162 7 158 3.16e-25 103
MS.gene05200.t1 AT4G01540 40.385 156 79 6 17 162 7 158 3.25e-25 102
MS.gene05200.t1 AT1G02250 38.922 167 88 6 15 171 4 166 7.22e-25 101
MS.gene05200.t1 AT5G22380 37.179 156 81 5 17 157 8 161 1.23e-24 98.2
MS.gene05200.t1 AT5G50820 37.762 143 81 4 5 144 7 144 2.97e-24 95.9
MS.gene05200.t1 AT3G04420 37.086 151 84 4 15 158 4 150 6.56e-23 94.7
MS.gene05200.t1 AT3G04420 37.086 151 84 4 15 158 4 150 7.65e-23 95.5
MS.gene05200.t1 AT3G44350 36.774 155 83 5 17 158 8 160 1.67e-22 92.4
MS.gene05200.t1 AT1G02220 37.908 153 75 6 15 157 4 146 1.38e-21 92.4
MS.gene05200.t1 AT3G44350 38.235 136 73 4 17 143 8 141 5.83e-21 86.3
MS.gene05200.t1 AT4G28530 38.519 135 64 3 7 122 3 137 5.86e-21 89.7
MS.gene05200.t1 AT3G10490 44.000 100 41 3 84 179 2 90 5.15e-19 84.7
MS.gene05200.t1 AT3G10490 44.000 100 41 3 84 179 2 90 5.15e-19 84.7
MS.gene05200.t1 AT2G18060 49.367 79 36 3 89 165 2 78 7.88e-19 83.2
MS.gene05200.t1 AT1G01010 33.544 158 82 7 17 158 6 156 7.78e-17 79.3
MS.gene05200.t1 AT3G56530 33.544 158 88 6 11 157 49 200 5.11e-16 76.3
MS.gene05200.t1 AT3G55210 32.571 175 86 8 14 165 11 176 5.14e-16 75.9
MS.gene05200.t1 AT2G43000 42.857 91 45 4 79 165 8 95 7.40e-15 71.2
MS.gene05200.t1 AT5G41090 28.090 178 96 6 14 176 8 168 1.79e-14 70.5
MS.gene05200.t1 AT5G22290 36.275 102 60 2 90 191 2 98 3.55e-13 67.4
MS.gene05200.t1 AT5G14000 52.727 55 26 0 7 61 8 62 2.52e-12 65.1
MS.gene05200.t1 AT4G29230 30.286 175 89 9 12 158 46 215 2.92e-11 63.2
MS.gene05200.t1 AT4G29230 30.286 175 89 9 12 158 45 214 3.05e-11 63.2
MS.gene05200.t1 AT4G29230 29.310 174 92 8 12 158 46 215 3.69e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGTGCTCCCATCCTCTTT+TGG 0.306942 6.3:-71475295 MS.gene05200:CDS
GGGCTACAAACTCTGGTTAC+TGG 0.347454 6.3:-71475824 MS.gene05200:CDS
CTGTTGGATTGGTTCCCATT+TGG 0.351066 6.3:+71475846 None:intergenic
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6.3:-71476114 MS.gene05200:CDS
CCAAAGTTGTTGCCACTGCT+TGG 0.398431 6.3:+71475463 None:intergenic
TTGGTTCCCATTTGGACACT+TGG 0.401973 6.3:+71475854 None:intergenic
ATCTTTGCAAGTCTGATCCT+TGG 0.402483 6.3:-71476115 MS.gene05200:CDS
TTCATGTTCATTTGTGATTG+AGG 0.408967 6.3:+71475342 None:intergenic
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6.3:-71475768 MS.gene05200:CDS
ATTCATGATCCAATCAGTTC+TGG 0.414917 6.3:+71475698 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 6.3:+71476210 None:intergenic
CAAATGGGAACCAATCCAAC+AGG 0.433155 6.3:-71475845 MS.gene05200:CDS
AAAGAAGCCAAGTGTCCAAA+TGG 0.433606 6.3:-71475861 MS.gene05200:CDS
AAGATCAATTTCAGAAATGA+TGG 0.441910 6.3:+71476133 None:intergenic
AGTTTGTAGCCCTGTTGGAT+TGG 0.451662 6.3:+71475835 None:intergenic
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6.3:-71475813 MS.gene05200:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.462280 6.3:-71475808 MS.gene05200:CDS
CCAAGCAGTGGCAACAACTT+TGG 0.462790 6.3:-71475463 MS.gene05200:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 6.3:+71476200 None:intergenic
TCCAACAGGGCTACAAACTC+TGG 0.476642 6.3:-71475831 MS.gene05200:CDS
CTCATAGTTCCAGAACTGAT+TGG 0.479030 6.3:-71475707 MS.gene05200:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 6.3:-71475661 MS.gene05200:intron
TTCAGCTTCAAGTTCAAAAG+TGG 0.491537 6.3:-71475419 MS.gene05200:CDS
ACCAGAGTTTGTAGCCCTGT+TGG 0.493653 6.3:+71475830 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.495223 6.3:+71475348 None:intergenic
AAATGATGGAAGCAGGTAAA+GGG 0.510410 6.3:+71476147 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.511570 6.3:+71475667 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 6.3:+71475286 None:intergenic
AGAAAGACTGACCAAGGGGT+TGG 0.520507 6.3:+71475650 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 6.3:+71475282 None:intergenic
GAAATGATGGAAGCAGGTAA+AGG 0.533367 6.3:+71476146 None:intergenic
ATTTCAGAAATGATGGAAGC+AGG 0.539963 6.3:+71476140 None:intergenic
TAGGTGATATGGAACAAGAT+AGG 0.546204 6.3:-71475899 MS.gene05200:CDS
AGATAGCAGTAACTCATTCA+CGG 0.547852 6.3:-71475314 MS.gene05200:CDS
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 6.3:+71475659 None:intergenic
TGTTCAATACTTGAAGCGTA+AGG 0.550952 6.3:-71476180 MS.gene05200:CDS
AAGAAGCCAAGTGTCCAAAT+GGG 0.550978 6.3:-71475860 MS.gene05200:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563013 6.3:+71475287 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 6.3:-71476104 MS.gene05200:intron
ATATTTCTGAAGAGGAGAGC+TGG 0.573188 6.3:-71475514 MS.gene05200:CDS
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6.3:-71475522 MS.gene05200:CDS
CAATCAGTTCTGGAACTATG+AGG 0.582807 6.3:+71475708 None:intergenic
ATGTTCATTTGTGATTGAGG+AGG 0.585375 6.3:+71475345 None:intergenic
AAAGGAGTGAAGCCAAGCAG+TGG 0.615889 6.3:-71475475 MS.gene05200:CDS
GTTGGATGAAAACGGAAACC+TGG 0.621096 6.3:+71476218 None:intergenic
TACATACCAGGTAAATCCCA+AGG 0.624010 6.3:+71476098 None:intergenic
GGTGAAGTGAGATTGCCACC+AGG 0.631641 6.3:-71476236 MS.gene05200:CDS
TCAGTTCTGGAACTATGAGG+TGG 0.658933 6.3:+71475711 None:intergenic
CAGTGGCAACAACTTTGGTG+AGG 0.677310 6.3:-71475458 MS.gene05200:CDS
AAATGGGAACCAATCCAACA+GGG 0.702925 6.3:-71475844 MS.gene05200:CDS
GGATGAAAACGGAAACCTGG+TGG 0.761895 6.3:+71476221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATATGAATGAATT+GGG - chr6.3:71475979-71475998 MS.gene05200:intron 10.0%
!! TATTATTAATATGAATGAAT+TGG - chr6.3:71475978-71475997 MS.gene05200:intron 10.0%
!! CTTTCTTTGAATATGTATTT+GGG - chr6.3:71475915-71475934 MS.gene05200:intron 20.0%
!! TCTTTCTTTGAATATGTATT+TGG - chr6.3:71475914-71475933 MS.gene05200:intron 20.0%
!!! ATTTGGGTTTTGTAATTTAA+AGG - chr6.3:71475931-71475950 MS.gene05200:intron 20.0%
! AAGATCAATTTCAGAAATGA+TGG + chr6.3:71475418-71475437 None:intergenic 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG + chr6.3:71475477-71475496 None:intergenic 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6.3:71475291-71475310 MS.gene05200:CDS 25.0%
TAGTAGAAGTTATCATGTTC+CGG + chr6.3:71475570-71475589 None:intergenic 30.0%
TTCATGTTCATTTGTGATTG+AGG + chr6.3:71476209-71476228 None:intergenic 30.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6.3:71476000-71476019 MS.gene05200:intron 30.0%
!! GGTTGTTTTCTATGATTTCT+TGG - chr6.3:71476150-71476169 MS.gene05200:CDS 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6.3:71475638-71475657 MS.gene05200:intron 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6.3:71475810-71475829 MS.gene05200:CDS 30.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6.3:71476264-71476283 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6.3:71475351-71475370 None:intergenic 35.0%
AGATAGCAGTAACTCATTCA+CGG - chr6.3:71476234-71476253 MS.gene05200:CDS 35.0%
ATGTTCATTTGTGATTGAGG+AGG + chr6.3:71476206-71476225 None:intergenic 35.0%
ATTCAAAGAAAGACTGACCA+AGG + chr6.3:71475907-71475926 None:intergenic 35.0%
ATTCATGATCCAATCAGTTC+TGG + chr6.3:71475853-71475872 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6.3:71475341-71475360 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6.3:71475465-71475484 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6.3:71476265-71476284 None:intergenic 35.0%
TAGGTGATATGGAACAAGAT+AGG - chr6.3:71475649-71475668 MS.gene05200:intron 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6.3:71475780-71475799 MS.gene05200:CDS 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6.3:71475368-71475387 MS.gene05200:CDS 35.0%
TTCAAAGAAAGACTGACCAA+GGG + chr6.3:71475906-71475925 None:intergenic 35.0%
! AAATGATGGAAGCAGGTAAA+GGG + chr6.3:71475404-71475423 None:intergenic 35.0%
! ATTTCAGAAATGATGGAAGC+AGG + chr6.3:71475411-71475430 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6.3:71475999-71476018 MS.gene05200:intron 35.0%
! TTCAGCTTCAAGTTCAAAAG+TGG - chr6.3:71476129-71476148 MS.gene05200:CDS 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6.3:71475630-71475649 MS.gene05200:intron 35.0%
AAAGAAGCCAAGTGTCCAAA+TGG - chr6.3:71475687-71475706 MS.gene05200:CDS 40.0%
AAATGGGAACCAATCCAACA+GGG - chr6.3:71475704-71475723 MS.gene05200:CDS 40.0%
AAGAAGCCAAGTGTCCAAAT+GGG - chr6.3:71475688-71475707 MS.gene05200:CDS 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6.3:71475433-71475452 MS.gene05200:CDS 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6.3:71475600-71475619 MS.gene05200:intron 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6.3:71475841-71475860 MS.gene05200:CDS 40.0%
GGTGCTAAAAATGGAGTGAA+AGG - chr6.3:71476055-71476074 MS.gene05200:intron 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6.3:71475453-71475472 None:intergenic 40.0%
TCAAAGAAAGACTGACCAAG+GGG + chr6.3:71475905-71475924 None:intergenic 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6.3:71475434-71475453 MS.gene05200:CDS 40.0%
TGAAGCACAGACACAAACAT+CGG - chr6.3:71475514-71475533 MS.gene05200:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6.3:71475740-71475759 MS.gene05200:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG + chr6.3:71476203-71476222 None:intergenic 40.0%
TTGTTTGCAGTAGTAGTACG+TGG + chr6.3:71475593-71475612 None:intergenic 40.0%
! ATATTTCTGAAGAGGAGAGC+TGG - chr6.3:71476034-71476053 MS.gene05200:intron 40.0%
! GAAATGATGGAAGCAGGTAA+AGG + chr6.3:71475405-71475424 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6.3:71476026-71476045 MS.gene05200:intron 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6.3:71475843-71475862 None:intergenic 40.0%
ACACTGACACATTCAGACAC+CGG - chr6.3:71475548-71475567 MS.gene05200:intron 45.0%
AGTTTGTAGCCCTGTTGGAT+TGG + chr6.3:71475716-71475735 None:intergenic 45.0%
CAAATGGGAACCAATCCAAC+AGG - chr6.3:71475703-71475722 MS.gene05200:CDS 45.0%
GTTGGATGAAAACGGAAACC+TGG + chr6.3:71475333-71475352 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6.3:71475444-71475463 MS.gene05200:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6.3:71475735-71475754 MS.gene05200:CDS 45.0%
TTGGTTCCCATTTGGACACT+TGG + chr6.3:71475697-71475716 None:intergenic 45.0%
! AGGAGAGCTGGTGCTAAAAA+TGG - chr6.3:71476046-71476065 MS.gene05200:intron 45.0%
!! CTGTTGGATTGGTTCCCATT+TGG + chr6.3:71475705-71475724 None:intergenic 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6.3:71475840-71475859 None:intergenic 45.0%
AAAGGAGTGAAGCCAAGCAG+TGG - chr6.3:71476073-71476092 MS.gene05200:intron 50.0%
ACCAGAGTTTGTAGCCCTGT+TGG + chr6.3:71475721-71475740 None:intergenic 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr6.3:71475901-71475920 None:intergenic 50.0%
CACAAACATCGGACACAACG+TGG - chr6.3:71475525-71475544 MS.gene05200:CDS 50.0%
CAGTGGCAACAACTTTGGTG+AGG - chr6.3:71476090-71476109 MS.gene05200:intron 50.0%
CCAAAGTTGTTGCCACTGCT+TGG + chr6.3:71476088-71476107 None:intergenic 50.0%
CCAAGCAGTGGCAACAACTT+TGG - chr6.3:71476085-71476104 MS.gene05200:intron 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6.3:71475330-71475349 None:intergenic 50.0%
GGGCTACAAACTCTGGTTAC+TGG - chr6.3:71475724-71475743 MS.gene05200:CDS 50.0%
TCCAACAGGGCTACAAACTC+TGG - chr6.3:71475717-71475736 MS.gene05200:CDS 50.0%
GGTGAAGTGAGATTGCCACC+AGG - chr6.3:71475312-71475331 MS.gene05200:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6.3:71475884-71475903 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6.3:71475887-71475906 MS.gene05200:CDS 55.0%
! ACGGTGCTCCCATCCTCTTT+TGG - chr6.3:71476253-71476272 MS.gene05200:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6.3:71475892-71475911 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 71475285 71476285 71475285 ID=MS.gene05200
chr6.3 mRNA 71475285 71476285 71475285 ID=MS.gene05200.t1;Parent=MS.gene05200
chr6.3 exon 71476105 71476285 71476105 ID=MS.gene05200.t1.exon1;Parent=MS.gene05200.t1
chr6.3 CDS 71476105 71476285 71476105 ID=cds.MS.gene05200.t1;Parent=MS.gene05200.t1
chr6.3 exon 71475662 71475918 71475662 ID=MS.gene05200.t1.exon2;Parent=MS.gene05200.t1
chr6.3 CDS 71475662 71475918 71475662 ID=cds.MS.gene05200.t1;Parent=MS.gene05200.t1
chr6.3 exon 71475285 71475560 71475285 ID=MS.gene05200.t1.exon3;Parent=MS.gene05200.t1
chr6.3 CDS 71475285 71475560 71475285 ID=cds.MS.gene05200.t1;Parent=MS.gene05200.t1
Gene Sequence

>MS.gene05200

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTCTCCCTTTACCTGCTTCCATCATTTCTGAAATTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTAACCTTTCTTTTCTTTTTCGTTCATTTATAATCATAACTTAATGAAGCACAGACACAAACATCGGACACAACGTGGACACTGACACATTCAGACACCGGAACATGATAACTTCTACTACCACGTACTACTACTGCAAACAATGTCATGTGGATTGATTTGAGTGTGTGTTGTTCTTTTAGGTGATATGGAACAAGATAGGTACTTTTTCAGTACAAAAGAAGCCAAGTGTCCAAATGGGAACCAATCCAACAGGGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATAGTTCCAGAACTGATTGGATCATGAATGAATATCACCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTGAATATGTATTTGGGTTTTGTAATTTAAAGGTGTTGTCATTAGTGTGACTTGAATTATTATTAATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGCTGGTGCTAAAAATGGAGTGAAAGGAGTGAAGCCAAGCAGTGGCAACAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTGGCAGTGAAGAAGAACAATTCTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGATAGCAGTAACTCATTCACGGTGCTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene05200.t1

MEKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSLPLPASIISEIDLCKSDPWDLPGDMEQDRYFFSTKEAKCPNGNQSNRATNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRGKPPHSSRTDWIMNEYHLTSSHSNPLNENWVLCRIFLKRRAGAKNGVKGVKPSSGNNFGEVKKNSASASSSKVVVFYDFLAVKKNNSDASSSSITNEHENEDSSNSFTVLPSSFGNA